Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/67/0d4a3984fb0f6c581828213b6407c7/1173_C31_T1_RNA_SLD_01_A23T55JLT4_2.sample_qc.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/56/4c7fdd252fb79bfc7f0e64db7acfd8/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/56/4c7fdd252fb79bfc7f0e64db7acfd8/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/88/077802c6c0b51e83cb0fb2beb029c0/1173_C31_T1_RNA_SLD_01_A23T55JLT4_2
==> STAGING COMPLETE (4 inputs)

Processing Kallisto file: 1173_C31_T1_RNA_SLD_01_A23T55JLT4_2/abundance.h5
Successfully converted 1173_C31_T1_RNA_SLD_01_A23T55JLT4_2/abundance.h5 to 1173_C31_T1_RNA_SLD_01_A23T55JLT4_2_kallisto_mqc.tsv
  Sample: 1173_C31_T1_RNA_SLD_01_A23T55JLT4_2
  Mean Fragment Length: 113.6 bp
  Median Fragment Length: 107.0 bp
  pct_mito_est_counts: 0.018%
  pct_ribo_est_counts: 1.078%
  pct_hk_est_counts: 0.516%
  pct_male_est_counts: 0.0%
  pct_mito_tpm: 0.036%
  pct_ribo_tpm: 3.166%
  pct_hk_tpm: 0.782%
  pct_male_tpm: 0.0%
  score_log2tpm1_mean_chry_signature: 5.758%