File Info

Filename
fi_workdir/Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/95/111ba28e1cb87cfef81e9391f6a220/fi_workdir/Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 10:50:53
                             Started mapping on |	Jun 08 10:57:30
                                    Finished on |	Jun 08 12:02:10
       Mapping speed, Million of reads per hour |	269.49

                          Number of input reads |	290453956
                      Average input read length |	228
                                    UNIQUE READS:
                   Uniquely mapped reads number |	272326422
                        Uniquely mapped reads % |	93.76%
                          Average mapped length |	227.41
                       Number of splices: Total |	212101596
            Number of splices: Annotated (sjdb) |	206294027
                       Number of splices: GT/AG |	209112647
                       Number of splices: GC/AG |	1623104
                       Number of splices: AT/AC |	126238
               Number of splices: Non-canonical |	1239607
                      Mismatch rate per base, % |	0.31%
                         Deletion rate per base |	0.02%
                        Deletion average length |	1.86
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.72
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	12475027
             % of reads mapped to multiple loci |	4.30%
        Number of reads mapped to too many loci |	840632
             % of reads mapped to too many loci |	0.29%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	0
       % of reads unmapped: too many mismatches |	0.00%
            Number of reads unmapped: too short |	3932314
                 % of reads unmapped: too short |	1.35%
                Number of reads unmapped: other |	879561
                     % of reads unmapped: other |	0.30%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%