Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-fe242a7f-c5b9-4d3f-88fa-f3e739280d3a/45/503758169673f6b79761b4db9d3b84/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/53/3a2b224432a073d4f29eb60437b644/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ad/d9ac976a334e0536e6b08427a0f8fc/1173_CRL_T1_RNA_SLD_01_A23T55JLT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/53/3a2b224432a073d4f29eb60437b644/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8e/c8b07d113a3ecb27f115c8caa27991/1173_CRL_T1_RNA_SLD_01_A23T55JLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...
RIMKLB--AP000442.1
starfusion
arriba
ZPR1--APOA1
starfusion
arriba
IQGAP1--SEMA4B
starfusion
arriba
LTBP3--GANAB
starfusion
arriba
TLK2P1--AC110079.1
starfusion
STX16--NPEPL1
starfusion
arriba
TLK2--AC240565.1
starfusion
COL1A1--SLC45A4
starfusion
TVP23C--CDRT4
arriba
AC015911.9--SLFN12L
arriba
ZFP64--RPL36P1
arriba
ZFP64--TSHZ2
arriba
KLRC4--KLRK1
arriba
RAPGEF6--KRAS
arriba
RAPGEF6--AC087239.1
arriba
CBL--DACH2
arriba

  0%|          | 0/16 [00:00<?, ?it/s]
Processing RIMKLB--AP000442.1:   0%|          | 0/16 [00:00<?, ?it/s]
Processing RIMKLB--AP000442.1:   6%|▋         | 1/16 [00:00<00:01,  9.24it/s]
Processing ZPR1--APOA1:   6%|▋         | 1/16 [00:00<00:01,  9.24it/s]       
Processing ZPR1--APOA1:  12%|█▎        | 2/16 [00:00<00:01,  9.47it/s]
Processing IQGAP1--SEMA4B:  12%|█▎        | 2/16 [00:00<00:01,  9.47it/s]
Processing IQGAP1--SEMA4B:  19%|█▉        | 3/16 [00:00<00:01,  9.54it/s]
Processing LTBP3--GANAB:  19%|█▉        | 3/16 [00:00<00:01,  9.54it/s]  
Processing LTBP3--GANAB:  25%|██▌       | 4/16 [00:00<00:01,  9.58it/s]
Processing TLK2P1--AC110079.1:  25%|██▌       | 4/16 [00:00<00:01,  9.58it/s]
Processing TLK2P1--AC110079.1:  31%|███▏      | 5/16 [00:00<00:01,  9.60it/s]
Processing STX16--NPEPL1:  31%|███▏      | 5/16 [00:00<00:01,  9.60it/s]     
Processing STX16--NPEPL1:  38%|███▊      | 6/16 [00:00<00:01,  9.62it/s]
Processing TLK2--AC240565.1:  38%|███▊      | 6/16 [00:00<00:01,  9.62it/s]
Processing TLK2--AC240565.1:  44%|████▍     | 7/16 [00:00<00:00,  9.62it/s]
Processing COL1A1--SLC45A4:  44%|████▍     | 7/16 [00:00<00:00,  9.62it/s] 
Processing COL1A1--SLC45A4:  50%|█████     | 8/16 [00:00<00:00,  9.63it/s]
Processing TVP23C--CDRT4:  50%|█████     | 8/16 [00:00<00:00,  9.63it/s]  
Processing TVP23C--CDRT4:  56%|█████▋    | 9/16 [00:00<00:00,  9.63it/s]
Processing AC015911.9--SLFN12L:  56%|█████▋    | 9/16 [00:00<00:00,  9.63it/s]
Processing AC015911.9--SLFN12L:  62%|██████▎   | 10/16 [00:01<00:00,  9.64it/s]
Processing ZFP64--RPL36P1:  62%|██████▎   | 10/16 [00:01<00:00,  9.64it/s]     
Processing ZFP64--RPL36P1:  69%|██████▉   | 11/16 [00:01<00:00,  9.64it/s]
Processing ZFP64--TSHZ2:  69%|██████▉   | 11/16 [00:01<00:00,  9.64it/s]  
Processing ZFP64--TSHZ2:  75%|███████▌  | 12/16 [00:01<00:00,  9.64it/s]
Processing KLRC4--KLRK1:  75%|███████▌  | 12/16 [00:01<00:00,  9.64it/s]
Processing KLRC4--KLRK1:  81%|████████▏ | 13/16 [00:01<00:00,  9.64it/s]
Processing RAPGEF6--KRAS:  81%|████████▏ | 13/16 [00:01<00:00,  9.64it/s]
Processing RAPGEF6--KRAS:  88%|████████▊ | 14/16 [00:01<00:00,  9.64it/s]
Processing RAPGEF6--AC087239.1:  88%|████████▊ | 14/16 [00:01<00:00,  9.64it/s]
Processing RAPGEF6--AC087239.1:  94%|█████████▍| 15/16 [00:01<00:00,  9.64it/s]
Processing CBL--DACH2:  94%|█████████▍| 15/16 [00:01<00:00,  9.64it/s]         
Processing CBL--DACH2: 100%|██████████| 16/16 [00:01<00:00,  9.64it/s]
Processing CBL--DACH2: 100%|██████████| 16/16 [00:01<00:00,  9.61it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory