Done. -parsing GTF file: /tmp/nxf.Wyv1hwOhSd/1173_G2E_T1_RNA_SLD_01_A23T55JLT4_2.gtf * Running CMD: /usr/local/bin/STAR --runThreadN 8 --genomeDir /tmp/nxf.Wyv1hwOhSd/ctat_genome_lib_build_dir/ref_genome.fa.star.idx --outSAMtype BAM SortedByCoordinate --twopassMode None --alignSJDBoverhangMin 10 --genomeSuffixLengthMax 10000 --limitBAMsortRAM 47271261705 --alignInsertionFlush Right --alignMatesGapMax 100000 --alignIntronMax 100000 --outSAMattributes All --readFilesIn /tmp/nxf.Wyv1hwOhSd/1173_G2E_T1_RNA_SLD_01_A23T55JLT4_2_1.fastp.fastq.gz /tmp/nxf.Wyv1hwOhSd/1173_G2E_T1_RNA_SLD_01_A23T55JLT4_2_2.fastp.fastq.gz --genomeFastaFiles /tmp/nxf.Wyv1hwOhSd/fi_workdir/1173_G2E_T1_RNA_SLD_01_A23T55JLT4_2.fa --outSAMfilter KeepAllAddedReferences --sjdbGTFfile /tmp/nxf.Wyv1hwOhSd/fi_workdir/1173_G2E_T1_RNA_SLD_01_A23T55JLT4_2.gtf --alignSJstitchMismatchNmax 5 -1 5 5 --scoreGapNoncan -6 --readFilesCommand 'gunzip -c' * Running CMD: mv Aligned.sortedByCoord.out.bam 1173_G2E_T1_RNA_SLD_01_A23T55JLT4_2.star.sortedByCoord.out.bam * Running CMD: samtools index 1173_G2E_T1_RNA_SLD_01_A23T55JLT4_2.star.sortedByCoord.out.bam 11:28:54 : INFO : Done. -parsing GTF file: /tmp/nxf.Wyv1hwOhSd/fi_workdir/1173_G2E_T1_RNA_SLD_01_A23T55JLT4_2.gtf -parsing /tmp/nxf.Wyv1hwOhSd/fi_workdir/1173_G2E_T1_RNA_SLD_01_A23T55JLT4_2.star.cSorted.dupsMarked.bam [10000] [20000] [30000] [40000] [50000] [60000] [70000] [80000] [90000] [100000] [110000] [120000] [130000] [140000] [150000] [160000] [170000] [180000] [190000] [200000] [210000] [220000] [230000] [240000] [250000] [260000] [270000] [280000] [290000] [300000] [310000] [320000] [330000] [340000] [350000] [360000] [370000] [380000] [390000] [400000] [410000] [420000] [430000] [440000] [450000] [460000] [470000] [480000] [490000] [500000] [510000] [520000] [530000] [540000] [550000] [560000] [570000] [580000] [590000] [600000] [610000] [620000] [630000] [640000] [650000] [660000] [670000] [680000] [690000] [700000] [710000] [720000] [730000] [740000] [750000] [760000] [770000] [780000] [790000] [800000] [810000] [820000] [830000] [840000] [850000] [860000] [870000] [880000] [890000] [900000] [910000] [920000] [930000] [940000] [950000] [960000] [970000] [980000] [990000] [1000000] [1010000] [1020000] [1030000] [1040000] [1050000] [1060000] [1070000] [1080000] [1090000] [1100000] [1110000] [1120000] [1130000] [1140000] [1150000] [1160000] [1170000] [1180000] [1190000] [1200000] [1210000] [1220000] [1230000] [1240000] [1250000] [1260000] [1270000] [1280000] [1290000] [1300000] [1310000] [1320000] [1330000] [1340000] [1350000] [1360000] [1370000] [1380000] [1390000] [1400000] [1410000] [1420000] [1430000] [1440000] [1450000] [1460000] [1470000] [1480000] [1490000] [1500000] [1510000] [1520000] [1530000] [1540000] [1550000] [1560000] [1570000] [1580000] [1590000] [1600000] [1610000] [1620000] [1630000] [1640000] [1650000] [1660000] [1670000] [1680000] [1690000] [1700000] [1710000] [1720000] [1730000] [1740000] [1750000] [1760000] [1770000] [1780000] [1790000] [1800000] [1810000] [1820000] [1830000] [1840000] [1850000] [1860000] [1870000] [1880000] [1890000] [1900000] [1910000] [1920000] [1930000] [1940000] [1950000] [1960000] [1970000] [1980000] [1990000] [2000000] [2010000] [2020000] [2030000] [2040000] [2050000] [2060000] [2070000] [2080000] [2090000] [2100000] [2110000] [2120000] [2130000] [2140000] [2150000] [2160000] [2170000] [2180000] [2190000] [2200000] [2210000] [2220000] [2230000] [2240000] [2250000] [2260000] [2270000] [2280000] [2290000] [2300000] [2310000] [2320000] [2330000] [2340000] [2350000] [2360000] [2370000] [2380000] [2390000] [2400000] [2410000] [2420000] [2430000] [2440000] [2450000] [2460000] [2470000] [2480000] [2490000] [2500000] [2510000] [2520000] [2530000] [2540000] [2550000] [2560000] [2570000] [2580000] [2590000] [2600000] [2610000] [2620000] [2630000] [2640000] [2650000] [2660000] -done parsing /tmp/nxf.Wyv1hwOhSd/fi_workdir/1173_G2E_T1_RNA_SLD_01_A23T55JLT4_2.star.cSorted.dupsMarked.bam. Extracting junction info. junction read elimination tally: $VAR1 = { 'exons hit < 2' => 5, 'num_hits: 2 != num_counted_on_fusion_contigs 1 ' => 27, 'num_hits: 6 != num_counted_on_fusion_contigs 3 ' => 39, 'excessive soft clipping' => 19424, 'per_id < 96' => 13648, 'num_hits: 6 != num_counted_on_fusion_contigs 2 ' => 24, 'num genes matched < 2' => 102, 'num_hits: 6 != num_counted_on_fusion_contigs 4 ' => 48, 'num_hits: 3 != num_counted_on_fusion_contigs 1 ' => 8, ' ** passed ** ' => 2895, 'low complexity anchor region' => 3, 'num_hits: 4 != num_counted_on_fusion_contigs 2 ' => 72, 'small anchor length' => 36 }; -writing fusion junction support info. -outputting the spanning read info: /tmp/nxf.Wyv1hwOhSd/fi_workdir/1173_G2E_T1_RNA_SLD_01_A23T55JLT4_2.star.cSorted.dupsMarked.bam.fusion_spanning_info. - counting read alignments among fusion contigs. [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] [28000] [29000] [30000] [31000] [32000] [33000] [34000] [35000] [36000] [37000] [38000] [39000] [40000] [41000] [42000] [43000] [44000] [45000] [46000] [47000] [48000] [49000] [50000] [51000] [52000] [53000] [54000] [55000] [56000] [57000] [58000] [59000] [60000] [61000] [62000] [63000] [64000] [65000] [66000] [67000] [68000] [69000] [70000] [71000] [72000] [73000] [74000] [75000] [76000] [77000] [78000] [79000] [80000] [81000] [82000] [83000] [84000] [85000] [86000] [87000] [88000] [89000] [90000] [91000] [92000] [93000] [94000] [95000] [96000] [97000] [98000] [99000] [100000] [101000] [102000] [103000] [104000] [105000] [106000] [107000] [108000] [109000] [110000] [111000] [112000] [113000] [114000] [115000] [116000] [117000] [118000] [119000] [120000] [121000] [122000] [123000] [124000] [125000] [126000] [127000] [128000] [129000] [130000] [131000] [132000] [133000] [134000] [135000] [136000] [137000] [138000] [139000] [140000] [141000] [142000] [143000] [144000] [145000] [146000] [147000] [148000] [149000] [150000] [151000] [152000] [153000] [154000] [155000] [156000] [157000] [158000] [159000] [160000] [161000] [162000] [163000] [164000] [165000] [166000] [167000] [168000] [169000] [170000] [171000] [172000] [173000] [174000] [175000] [176000] [177000] [178000] [179000] [180000] [181000] [182000] [183000] [184000] [185000] [186000] [187000] -fusion SPANNING read extraction for scaff: ADAP1--SNX8 [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] [28000] [29000] [30000] [31000] [32000] [33000] [34000] [35000] [36000] [37000] [38000] [39000] [40000] [41000] [42000] [43000] [44000] [45000] [46000] [47000] [48000] [49000] [50000] [51000] [52000] [53000] [54000] [55000] [56000] [57000] [58000] [59000] [60000] [61000] [62000] [63000] [64000] [65000] [66000] [67000] [68000] [69000] [70000] [71000] [72000] [73000] [74000] [75000] [76000] [77000] [78000] [79000] [80000] [81000] [82000] [83000] [84000] [85000] [86000] [87000] [88000] [89000] [90000] [91000] [92000] [93000] [94000] [95000] [96000] [97000] [98000] [99000] [100000] [101000] [102000] [103000] [104000] [105000] [106000] [107000] [108000] [109000] [110000] [111000] [112000] [113000] [114000] [115000] [116000] [117000] [118000] [119000] [120000] [121000] [122000] [123000] [124000] [125000] [126000] [127000] [128000] [129000] [130000] [131000] [132000] [133000] [134000] [135000] [136000] [137000] [138000] [139000] [140000] [141000] [142000] [143000] [144000] [145000] [146000] [147000] [148000] [149000] [150000] [151000] [152000] [153000] [154000] [155000] [156000] [157000] [158000] [159000] [160000] [161000] [162000] [163000] [164000] [165000] [166000] [167000] [168000] [169000] [170000] [171000] [172000] [173000] [174000] [175000] [176000] [177000] [178000] [179000] [180000] -fusion SPANNING read extraction for scaff: COX19--SNX8 [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] [28000] [29000] [30000] [31000] [32000] [33000] [34000] [35000] [36000] [37000] [38000] [39000] [40000] [41000] [42000] [43000] [44000] [45000] [46000] [47000] [48000] [49000] [50000] [51000] [52000] [53000] [54000] [55000] [56000] [57000] [58000] [59000] [60000] [61000] [62000] [63000] [64000] [65000] [66000] [67000] [68000] [69000] [70000] [71000] [72000] [73000] [74000] [75000] [76000] [77000] [78000] [79000] [80000] [81000] -fusion SPANNING read extraction for scaff: DNAAF5--AC009412.1 [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] [28000] [29000] [30000] [31000] [32000] [33000] [34000] [35000] [36000] [37000] [38000] [39000] [40000] [41000] [42000] [43000] [44000] [45000] [46000] [47000] [48000] [49000] [50000] [51000] [52000] [53000] [54000] [55000] [56000] [57000] [58000] [59000] [60000] [61000] [62000] [63000] [64000] [65000] [66000] [67000] [68000] [69000] [70000] [71000] [72000] [73000] [74000] [75000] [76000] [77000] [78000] [79000] [80000] [81000] -fusion SPANNING read extraction for scaff: DNAAF5--FAM220A [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] [28000] [29000] [30000] [31000] [32000] [33000] [34000] [35000] [36000] [37000] [38000] [39000] [40000] [41000] [42000] [43000] [44000] [45000] [46000] [47000] [48000] [49000] [50000] [51000] [52000] [53000] [54000] [55000] [56000] [57000] [58000] [59000] [60000] [61000] [62000] [63000] [64000] [65000] [66000] [67000] [68000] [69000] [70000] [71000] [72000] [73000] [74000] [75000] [76000] [77000] [78000] [79000] [80000] [81000] [82000] [83000] [84000] [85000] [86000] [87000] [88000] [89000] [90000] [91000] [92000] [93000] [94000] [95000] [96000] [97000] [98000] [99000] [100000] [101000] [102000] [103000] [104000] [105000] [106000] [107000] [108000] [109000] [110000] [111000] [112000] [113000] [114000] [115000] [116000] [117000] [118000] [119000] [120000] [121000] [122000] [123000] [124000] [125000] [126000] [127000] [128000] [129000] [130000] [131000] [132000] [133000] [134000] [135000] [136000] [137000] [138000] [139000] [140000] [141000] [142000] [143000] [144000] [145000] [146000] [147000] [148000] [149000] [150000] [151000] [152000] [153000] [154000] [155000] [156000] [157000] [158000] [159000] [160000] [161000] [162000] [163000] [164000] [165000] [166000] [167000] [168000] [169000] [170000] [171000] [172000] [173000] [174000] [175000] [176000] [177000] [178000] [179000] [180000] [181000] [182000] [183000] [184000] [185000] [186000] [187000] [188000] [189000] [190000] [191000] [192000] [193000] [194000] [195000] [196000] [197000] [198000] [199000] [200000] [201000] [202000] [203000] [204000] [205000] [206000] [207000] [208000] [209000] [210000] [211000] [212000] [213000] [214000] [215000] [216000] [217000] [218000] [219000] [220000] [221000] [222000] [223000] [224000] [225000] [226000] [227000] [228000] [229000] [230000] [231000] [232000] [233000] [234000] [235000] [236000] [237000] [238000] [239000] [240000] [241000] [242000] [243000] [244000] [245000] [246000] [247000] [248000] [249000] [250000] [251000] [252000] [253000] [254000] [255000] [256000] [257000] [258000] [259000] [260000] [261000] [262000] [263000] [264000] [265000] [266000] [267000] [268000] [269000] [270000] [271000] [272000] [273000] [274000] [275000] [276000] [277000] [278000] [279000] [280000] [281000] [282000] [283000] [284000] [285000] [286000] [287000] [288000] [289000] [290000] [291000] [292000] [293000] [294000] [295000] [296000] [297000] [298000] [299000] [300000] [301000] [302000] [303000] [304000] [305000] [306000] [307000] [308000] [309000] [310000] [311000] [312000] [313000] [314000] [315000] [316000] [317000] [318000] [319000] [320000] [321000] [322000] [323000] [324000] [325000] [326000] [327000] -fusion SPANNING read extraction for scaff: INTS1--GLCCI1 [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] [28000] [29000] [30000] [31000] [32000] [33000] [34000] [35000] [36000] [37000] [38000] [39000] [40000] [41000] [42000] [43000] [44000] [45000] [46000] [47000] [48000] [49000] [50000] [51000] [52000] [53000] [54000] [55000] [56000] [57000] [58000] [59000] [60000] [61000] [62000] [63000] [64000] [65000] [66000] [67000] [68000] [69000] [70000] -fusion SPANNING read extraction for scaff: MAD1L1--CHST12 [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] [28000] [29000] [30000] [31000] [32000] [33000] [34000] [35000] [36000] [37000] [38000] [39000] [40000] [41000] [42000] [43000] [44000] [45000] -fusion SPANNING read extraction for scaff: MAD1L1--OR7E39P [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] [28000] [29000] [30000] [31000] [32000] [33000] [34000] [35000] [36000] [37000] [38000] [39000] [40000] [41000] [42000] [43000] [44000] [45000] [46000] [47000] [48000] [49000] [50000] [51000] [52000] [53000] [54000] [55000] [56000] [57000] [58000] [59000] [60000] [61000] [62000] [63000] [64000] [65000] [66000] [67000] [68000] [69000] [70000] [71000] [72000] [73000] [74000] [75000] [76000] [77000] [78000] [79000] [80000] [81000] [82000] [83000] [84000] [85000] [86000] [87000] [88000] [89000] [90000] [91000] [92000] [93000] [94000] [95000] [96000] [97000] [98000] [99000] [100000] [101000] [102000] [103000] [104000] [105000] [106000] [107000] [108000] [109000] [110000] [111000] [112000] [113000] [114000] [115000] [116000] [117000] [118000] [119000] [120000] [121000] [122000] [123000] [124000] [125000] [126000] [127000] [128000] [129000] [130000] [131000] [132000] [133000] [134000] [135000] [136000] [137000] [138000] [139000] [140000] [141000] [142000] [143000] [144000] [145000] [146000] [147000] [148000] [149000] [150000] [151000] [152000] [153000] [154000] [155000] [156000] [157000] [158000] [159000] [160000] [161000] [162000] [163000] [164000] [165000] [166000] [167000] [168000] [169000] [170000] [171000] [172000] [173000] [174000] [175000] [176000] [177000] [178000] [179000] [180000] [181000] [182000] [183000] [184000] [185000] [186000] [187000] [188000] [189000] [190000] [191000] [192000] [193000] [194000] [195000] [196000] [197000] [198000] [199000] [200000] [201000] [202000] [203000] [204000] [205000] [206000] [207000] [208000] [209000] [210000] [211000] [212000] [213000] [214000] [215000] [216000] [217000] [218000] [219000] [220000] [221000] [222000] [223000] [224000] [225000] [226000] [227000] [228000] [229000] [230000] [231000] [232000] [233000] [234000] [235000] [236000] [237000] [238000] [239000] [240000] [241000] [242000] [243000] [244000] [245000] [246000] [247000] [248000] [249000] [250000] [251000] [252000] [253000] [254000] [255000] [256000] [257000] [258000] [259000] [260000] [261000] [262000] [263000] [264000] [265000] [266000] [267000] [268000] [269000] [270000] [271000] [272000] [273000] [274000] [275000] [276000] [277000] [278000] [279000] [280000] [281000] [282000] [283000] [284000] [285000] [286000] [287000] [288000] [289000] [290000] [291000] [292000] [293000] [294000] [295000] [296000] [297000] [298000] [299000] [300000] [301000] [302000] [303000] [304000] [305000] [306000] [307000] [308000] [309000] [310000] [311000] [312000] [313000] [314000] [315000] [316000] [317000] [318000] [319000] [320000] [321000] [322000] [323000] [324000] [325000] [326000] [327000] [328000] [329000] [330000] [331000] [332000] [333000] [334000] [335000] [336000] [337000] [338000] [339000] [340000] [341000] [342000] [343000] [344000] [345000] [346000] [347000] [348000] [349000] [350000] [351000] [352000] [353000] [354000] [355000] [356000] [357000] [358000] [359000] [360000] [361000] [362000] [363000] [364000] [365000] [366000] [367000] [368000] [369000] [370000] [371000] [372000] [373000] [374000] [375000] [376000] [377000] [378000] [379000] [380000] [381000] [382000] [383000] [384000] [385000] [386000] [387000] [388000] [389000] [390000] [391000] [392000] [393000] [394000] [395000] [396000] [397000] [398000] [399000] [400000] [401000] [402000] [403000] [404000] [405000] [406000] [407000] [408000] [409000] [410000] [411000] [412000] [413000] [414000] [415000] [416000] [417000] [418000] [419000] [420000] [421000] [422000] [423000] [424000] [425000] [426000] [427000] [428000] [429000] [430000] [431000] [432000] [433000] [434000] [435000] [436000] [437000] [438000] [439000] [440000] [441000] [442000] [443000] [444000] [445000] [446000] [447000] [448000] [449000] [450000] [451000] [452000] [453000] [454000] [455000] [456000] [457000] [458000] [459000] [460000] [461000] [462000] [463000] [464000] [465000] [466000] [467000] [468000] [469000] [470000] [471000] [472000] [473000] [474000] [475000] [476000] [477000] [478000] [479000] [480000] [481000] [482000] [483000] [484000] [485000] [486000] [487000] [488000] [489000] [490000] [491000] [492000] [493000] [494000] [495000] [496000] [497000] [498000] [499000] [500000] [501000] [502000] [503000] [504000] [505000] [506000] [507000] [508000] [509000] [510000] [511000] [512000] [513000] [514000] [515000] [516000] [517000] [518000] [519000] [520000] [521000] [522000] [523000] [524000] [525000] [526000] [527000] [528000] [529000] [530000] [531000] [532000] [533000] [534000] [535000] [536000] [537000] [538000] [539000] [540000] [541000] [542000] [543000] [544000] [545000] [546000] [547000] [548000] [549000] [550000] [551000] [552000] [553000] [554000] [555000] [556000] [557000] [558000] [559000] [560000] [561000] [562000] [563000] [564000] [565000] [566000] [567000] [568000] [569000] [570000] [571000] [572000] [573000] [574000] [575000] [576000] [577000] [578000] [579000] [580000] [581000] [582000] [583000] [584000] [585000] [586000] [587000] [588000] [589000] [590000] [591000] [592000] [593000] [594000] [595000] [596000] [597000] [598000] [599000] [600000] [601000] [602000] [603000] [604000] [605000] [606000] [607000] [608000] [609000] [610000] [611000] [612000] [613000] [614000] [615000] [616000] [617000] [618000] [619000] [620000] [621000] [622000] [623000] [624000] [625000] [626000] [627000] [628000] [629000] [630000] [631000] [632000] [633000] [634000] [635000] [636000] [637000] [638000] [639000] [640000] [641000] [642000] [643000] [644000] [645000] [646000] [647000] [648000] [649000] [650000] [651000] [652000] [653000] [654000] [655000] [656000] [657000] [658000] [659000] [660000] [661000] [662000] [663000] [664000] [665000] [666000] [667000] [668000] [669000] [670000] [671000] [672000] [673000] [674000] [675000] [676000] [677000] [678000] [679000] [680000] [681000] [682000] [683000] [684000] [685000] [686000] [687000] -fusion SPANNING read extraction for scaff: PHF14--TNRC18 [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] [28000] [29000] [30000] [31000] [32000] [33000] [34000] [35000] [36000] [37000] [38000] [39000] [40000] [41000] [42000] [43000] [44000] [45000] [46000] [47000] [48000] [49000] [50000] [51000] [52000] [53000] [54000] [55000] [56000] [57000] [58000] [59000] [60000] [61000] [62000] [63000] [64000] [65000] [66000] [67000] [68000] [69000] [70000] [71000] [72000] [73000] [74000] [75000] [76000] [77000] [78000] [79000] [80000] [81000] [82000] [83000] [84000] [85000] [86000] [87000] [88000] [89000] [90000] [91000] [92000] [93000] [94000] [95000] [96000] [97000] [98000] [99000] [100000] [101000] [102000] [103000] [104000] [105000] [106000] [107000] [108000] [109000] [110000] [111000] [112000] [113000] [114000] [115000] [116000] [117000] [118000] [119000] [120000] [121000] -fusion SPANNING read extraction for scaff: SUN1--GRIFIN [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] [28000] [29000] [30000] [31000] [32000] [33000] [34000] [35000] [36000] [37000] [38000] [39000] [40000] [41000] [42000] [43000] [44000] [45000] [46000] [47000] [48000] [49000] [50000] [51000] [52000] [53000] [54000] [55000] [56000] [57000] [58000] [59000] [60000] [61000] [62000] [63000] [64000] [65000] [66000] [67000] [68000] [69000] [70000] [71000] [72000] [73000] [74000] [75000] [76000] [77000] [78000] [79000] [80000] [81000] [82000] [83000] [84000] [85000] [86000] [87000] [88000] [89000] [90000] [91000] [92000] [93000] [94000] [95000] [96000] [97000] [98000] [99000] [100000] [101000] [102000] [103000] [104000] [105000] [106000] [107000] [108000] [109000] [110000] [111000] [112000] [113000] [114000] [115000] [116000] [117000] [118000] [119000] [120000] [121000] [122000] [123000] [124000] [125000] [126000] [127000] [128000] [129000] [130000] [131000] [132000] [133000] [134000] [135000] [136000] [137000] [138000] [139000] [140000] [141000] [142000] [143000] [144000] [145000] [146000] [147000] [148000] [149000] [150000] [151000] [152000] [153000] [154000] [155000] [156000] [157000] -fusion SPANNING read extraction for scaff: SUN1--LFNG [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] -fusion SPANNING read extraction for scaff: TLK2P1--AC110079.1 [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] [28000] [29000] [30000] [31000] [32000] [33000] [34000] [35000] [36000] [37000] [38000] [39000] [40000] [41000] [42000] [43000] [44000] [45000] [46000] [47000] [48000] [49000] [50000] [51000] [52000] [53000] [54000] [55000] [56000] [57000] [58000] [59000] [60000] [61000] [62000] [63000] [64000] [65000] [66000] [67000] [68000] [69000] [70000] [71000] [72000] [73000] [74000] [75000] [76000] [77000] [78000] [79000] [80000] [81000] [82000] [83000] [84000] [85000] [86000] [87000] [88000] [89000] [90000] [91000] [92000] [93000] [94000] [95000] [96000] [97000] [98000] [99000] [100000] [101000] [102000] [103000] [104000] [105000] [106000] [107000] [108000] [109000] [110000] [111000] [112000] [113000] [114000] [115000] [116000] [117000] [118000] [119000] [120000] [121000] [122000] [123000] [124000] [125000] [126000] [127000] [128000] [129000] [130000] [131000] [132000] [133000] [134000] [135000] [136000] [137000] [138000] [139000] [140000] [141000] [142000] [143000] [144000] [145000] [146000] [147000] [148000] [149000] [150000] [151000] [152000] [153000] [154000] [155000] [156000] [157000] [158000] [159000] [160000] [161000] [162000] [163000] [164000] [165000] [166000] [167000] [168000] [169000] [170000] [171000] [172000] [173000] [174000] [175000] [176000] [177000] [178000] [179000] [180000] [181000] [182000] [183000] [184000] [185000] [186000] [187000] [188000] [189000] [190000] [191000] [192000] [193000] [194000] [195000] [196000] [197000] [198000] [199000] [200000] [201000] [202000] [203000] [204000] [205000] [206000] [207000] [208000] [209000] [210000] [211000] [212000] [213000] [214000] [215000] [216000] [217000] [218000] [219000] [220000] [221000] [222000] [223000] [224000] [225000] [226000] [227000] [228000] [229000] [230000] [231000] [232000] [233000] [234000] [235000] [236000] [237000] [238000] [239000] [240000] [241000] [242000] [243000] [244000] [245000] [246000] [247000] [248000] [249000] [250000] [251000] [252000] [253000] [254000] [255000] [256000] [257000] [258000] [259000] [260000] [261000] [262000] [263000] [264000] [265000] [266000] [267000] [268000] [269000] [270000] [271000] [272000] [273000] [274000] [275000] [276000] [277000] [278000] [279000] [280000] [281000] [282000] [283000] [284000] [285000] [286000] [287000] [288000] [289000] [290000] [291000] [292000] [293000] [294000] [295000] [296000] [297000] [298000] [299000] [300000] [301000] [302000] [303000] [304000] [305000] [306000] [307000] [308000] [309000] [310000] [311000] [312000] [313000] [314000] [315000] [316000] [317000] [318000] [319000] [320000] [321000] [322000] [323000] [324000] [325000] [326000] [327000] [328000] [329000] [330000] [331000] [332000] [333000] [334000] [335000] [336000] [337000] [338000] [339000] [340000] [341000] [342000] [343000] [344000] [345000] [346000] [347000] [348000] [349000] [350000] [351000] [352000] [353000] [354000] [355000] [356000] [357000] [358000] [359000] [360000] [361000] [362000] [363000] [364000] [365000] [366000] [367000] [368000] [369000] [370000] [371000] [372000] [373000] [374000] [375000] [376000] [377000] [378000] [379000] [380000] [381000] [382000] [383000] [384000] [385000] [386000] [387000] [388000] [389000] [390000] [391000] [392000] [393000] [394000] [395000] [396000] [397000] [398000] [399000] [400000] [401000] [402000] [403000] [404000] [405000] [406000] [407000] [408000] [409000] [410000] [411000] [412000] [413000] [414000] [415000] [416000] [417000] [418000] [419000] [420000] [421000] [422000] [423000] [424000] [425000] [426000] [427000] [428000] [429000] [430000] [431000] [432000] [433000] [434000] [435000] [436000] [437000] [438000] [439000] [440000] [441000] [442000] [443000] [444000] [445000] [446000] [447000] [448000] [449000] [450000] [451000] [452000] [453000] [454000] [455000] [456000] [457000] [458000] [459000] [460000] [461000] [462000] [463000] [464000] [465000] [466000] [467000] [468000] [469000] [470000] [471000] [472000] [473000] [474000] [475000] [476000] [477000] [478000] [479000] [480000] [481000] [482000] [483000] [484000] [485000] [486000] [487000] [488000] [489000] [490000] [491000] [492000] [493000] [494000] [495000] [496000] [497000] [498000] [499000] [500000] [501000] [502000] [503000] [504000] [505000] [506000] [507000] [508000] [509000] [510000] [511000] [512000] [513000] [514000] [515000] [516000] [517000] [518000] [519000] [520000] [521000] [522000] [523000] [524000] [525000] [526000] [527000] [528000] [529000] [530000] [531000] [532000] [533000] [534000] [535000] [536000] [537000] [538000] [539000] [540000] [541000] [542000] [543000] [544000] [545000] [546000] [547000] [548000] [549000] [550000] [551000] [552000] [553000] [554000] [555000] [556000] [557000] [558000] [559000] [560000] [561000] [562000] [563000] [564000] [565000] [566000] [567000] [568000] [569000] [570000] [571000] [572000] [573000] [574000] [575000] [576000] [577000] [578000] [579000] [580000] [581000] [582000] [583000] [584000] [585000] [586000] [587000] [588000] [589000] [590000] [591000] [592000] [593000] [594000] [595000] [596000] [597000] [598000] [599000] [600000] [601000] [602000] [603000] [604000] [605000] [606000] [607000] [608000] [609000] [610000] [611000] [612000] [613000] [614000] [615000] [616000] [617000] [618000] [619000] [620000] [621000] [622000] [623000] [624000] [625000] [626000] [627000] [628000] [629000] [630000] [631000] [632000] [633000] [634000] [635000] [636000] [637000] [638000] [639000] [640000] [641000] [642000] [643000] [644000] [645000] [646000] [647000] [648000] [649000] [650000] [651000] [652000] [653000] [654000] [655000] [656000] [657000] [658000] [659000] [660000] [661000] [662000] [663000] [664000] [665000] [666000] [667000] [668000] [669000] [670000] [671000] [672000] [673000] [674000] [675000] [676000] [677000] [678000] [679000] [680000] [681000] [682000] [683000] [684000] [685000] [686000] [687000] [688000] [689000] [690000] [691000] [692000] -fusion SPANNING read extraction for scaff: TNRC18--MAD1L1 [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] -fusion SPANNING read extraction for scaff: TVP23C--CDRT4 -filtered reads reasons: $VAR1 = { 'lacks exon overlap' => 19654, 'seq similar region alignment' => 10799 }; EM: Starting log likelihood: -2175.656447 EM: Round [1] log likelihood: -2175.642364 EM: Round [2] log likelihood: -2175.628479 EM: Round [3] log likelihood: -2175.614789 EM: Round [4] log likelihood: -2175.601289 EM: Round [5] log likelihood: -2175.587975 EM: Round [6] log likelihood: -2175.574843 EM: Round [7] log likelihood: -2175.561891 EM: Round [8] log likelihood: -2175.549113 EM: Round [9] log likelihood: -2175.536508 EM: Round [10] log likelihood: -2175.524071 EM: Round [11] log likelihood: -2175.511799 EM: Round [12] log likelihood: -2175.499689 EM: Round [13] log likelihood: -2175.487739 EM: Round [14] log likelihood: -2175.475944 EM: Round [15] log likelihood: -2175.464302 EM: Round [16] log likelihood: -2175.452810 EM: Round [17] log likelihood: -2175.441465 EM: Round [18] log likelihood: -2175.430265 EM: Round [19] log likelihood: -2175.419207 EM: Round [20] log likelihood: -2175.408289 EM: Round [21] log likelihood: -2175.397507 EM: Round [22] log likelihood: -2175.386860 EM: Round [23] log likelihood: -2175.376345 EM: Round [24] log likelihood: -2175.365960 EM: Round [25] log likelihood: -2175.355702 EM: Round [26] log likelihood: -2175.345570 EM: Round [27] log likelihood: -2175.335561 EM: Round [28] log likelihood: -2175.325673 EM: Round [29] log likelihood: -2175.315903 EM: Round [30] log likelihood: -2175.306251 EM: Round [31] log likelihood: -2175.296714 EM: Round [32] log likelihood: -2175.287290 EM: Round [33] log likelihood: -2175.277978 EM: Round [34] log likelihood: -2175.268774 EM: Round [35] log likelihood: -2175.259679 EM: Round [36] log likelihood: -2175.250689 EM: Round [37] log likelihood: -2175.241804 EM: Round [38] log likelihood: -2175.233021 EM: Round [39] log likelihood: -2175.224339 EM: Round [40] log likelihood: -2175.215757 EM: Round [41] log likelihood: -2175.207272 EM: Round [42] log likelihood: -2175.198884 EM: Round [43] log likelihood: -2175.190590 EM: Round [44] log likelihood: -2175.182390 EM: Round [45] log likelihood: -2175.174281 EM: Round [46] log likelihood: -2175.166264 EM: Round [47] log likelihood: -2175.158335 EM: Round [48] log likelihood: -2175.150494 EM: Round [49] log likelihood: -2175.142740 EM: Round [50] log likelihood: -2175.135070 EM: Round [51] log likelihood: -2175.127485 EM: Round [52] log likelihood: -2175.119983 EM: Round [53] log likelihood: -2175.112562 EM: Round [54] log likelihood: -2175.105221 EM: Round [55] log likelihood: -2175.097960 EM: Round [56] log likelihood: -2175.090776 EM: Round [57] log likelihood: -2175.083670 EM: Round [58] log likelihood: -2175.076639 EM: Round [59] log likelihood: -2175.069683 EM: Round [60] log likelihood: -2175.062801 EM: Round [61] log likelihood: -2175.055991 EM: Round [62] log likelihood: -2175.049254 EM: Round [63] log likelihood: -2175.042586 EM: Round [64] log likelihood: -2175.035989 EM: Round [65] log likelihood: -2175.029460 EM: Round [66] log likelihood: -2175.022999 EM: Round [67] log likelihood: -2175.016606 EM: Round [68] log likelihood: -2175.010278 EM: Round [69] log likelihood: -2175.004015 EM: Round [70] log likelihood: -2174.997816 EM: Round [71] log likelihood: -2174.991681 EM: Round [72] log likelihood: -2174.985608 EM: Round [73] log likelihood: -2174.979597 EM: Round [74] log likelihood: -2174.973647 EM: Round [75] log likelihood: -2174.967757 EM: Round [76] log likelihood: -2174.961926 EM: Round [77] log likelihood: -2174.956154 EM: Round [78] log likelihood: -2174.950440 EM: Round [79] log likelihood: -2174.944783 EM: Round [80] log likelihood: -2174.939182 EM: Round [81] log likelihood: -2174.933637 EM: Round [82] log likelihood: -2174.928146 EM: Round [83] log likelihood: -2174.922710 EM: Round [84] log likelihood: -2174.917328 EM: Round [85] log likelihood: -2174.911998 EM: Round [86] log likelihood: -2174.906721 EM: Round [87] log likelihood: -2174.901495 EM: Round [88] log likelihood: -2174.896320 EM: Round [89] log likelihood: -2174.891195 EM: Round [90] log likelihood: -2174.886120 EM: Round [91] log likelihood: -2174.881094 EM: Round [92] log likelihood: -2174.876117 EM: Round [93] log likelihood: -2174.871188 EM: Round [94] log likelihood: -2174.866305 EM: Round [95] log likelihood: -2174.861470 EM: Round [96] log likelihood: -2174.856681 EM: Round [97] log likelihood: -2174.851937 EM: Round [98] log likelihood: -2174.847239 EM: Round [99] log likelihood: -2174.842585 EM: Round [100] log likelihood: -2174.837975 EM: Round [101] log likelihood: -2174.833409 EM: Round [102] log likelihood: -2174.828886 EM: Round [103] log likelihood: -2174.824405 EM: Round [104] log likelihood: -2174.819966 EM: Round [105] log likelihood: -2174.815569 EM: Round [106] log likelihood: -2174.811213 EM: Round [107] log likelihood: -2174.806898 EM: Round [108] log likelihood: -2174.802622 EM: Round [109] log likelihood: -2174.798387 EM: Round [110] log likelihood: -2174.794190 EM: Round [111] log likelihood: -2174.790032 EM: Round [112] log likelihood: -2174.785913 EM: Round [113] log likelihood: -2174.781832 EM: Round [114] log likelihood: -2174.777788 EM: Round [115] log likelihood: -2174.773781 EM: Round [116] log likelihood: -2174.769810 EM: Round [117] log likelihood: -2174.765876 EM: Round [118] log likelihood: -2174.761978 EM: Round [119] log likelihood: -2174.758115 EM: Round [120] log likelihood: -2174.754288 EM: Round [121] log likelihood: -2174.750495 EM: Round [122] log likelihood: -2174.746736 EM: Round [123] log likelihood: -2174.743011 EM: Round [124] log likelihood: -2174.739320 EM: Round [125] log likelihood: -2174.735662 EM: Round [126] log likelihood: -2174.732037 EM: Round [127] log likelihood: -2174.728444 EM: Round [128] log likelihood: -2174.724883 EM: Round [129] log likelihood: -2174.721355 EM: Round [130] log likelihood: -2174.717857 EM: Round [131] log likelihood: -2174.714391 EM: Round [132] log likelihood: -2174.710955 EM: Round [133] log likelihood: -2174.707550 EM: Round [134] log likelihood: -2174.704175 EM: Round [135] log likelihood: -2174.700830 EM: Round [136] log likelihood: -2174.697515 EM: Round [137] log likelihood: -2174.694228 EM: Round [138] log likelihood: -2174.690971 EM: Round [139] log likelihood: -2174.687742 EM: Round [140] log likelihood: -2174.684541 EM: Round [141] log likelihood: -2174.681369 EM: Round [142] log likelihood: -2174.678224 EM: Round [143] log likelihood: -2174.675106 EM: Round [144] log likelihood: -2174.672016 EM: Round [145] log likelihood: -2174.668953 EM: Round [146] log likelihood: -2174.665916 EM: Round [147] log likelihood: -2174.662905 EM: Round [148] log likelihood: -2174.659921 EM: Round [149] log likelihood: -2174.656962 EM: Round [150] log likelihood: -2174.654029 EM: Round [151] log likelihood: -2174.651121 EM: Round [152] log likelihood: -2174.648238 EM: Round [153] log likelihood: -2174.645380 EM: Round [154] log likelihood: -2174.642546 EM: Round [155] log likelihood: -2174.639737 EM: Round [156] log likelihood: -2174.636952 EM: Round [157] log likelihood: -2174.634190 EM: Round [158] log likelihood: -2174.631453 EM: Round [159] log likelihood: -2174.628738 EM: Round [160] log likelihood: -2174.626047 EM: Round [161] log likelihood: -2174.623378 EM: Round [162] log likelihood: -2174.620732 EM: Round [163] log likelihood: -2174.618109 EM: Round [164] log likelihood: -2174.615507 EM: Round [165] log likelihood: -2174.612928 EM: Round [166] log likelihood: -2174.610370 EM: Round [167] log likelihood: -2174.607834 EM: Round [168] log likelihood: -2174.605320 EM: Round [169] log likelihood: -2174.602826 EM: Round [170] log likelihood: -2174.600354 EM: Round [171] log likelihood: -2174.597902 EM: Round [172] log likelihood: -2174.595471 EM: Round [173] log likelihood: -2174.593060 EM: Round [174] log likelihood: -2174.590669 EM: Round [175] log likelihood: -2174.588298 EM: Round [176] log likelihood: -2174.585947 EM: Round [177] log likelihood: -2174.583616 EM: Round [178] log likelihood: -2174.581304 EM: Round [179] log likelihood: -2174.579011 EM: Round [180] log likelihood: -2174.576737 EM: Round [181] log likelihood: -2174.574482 EM: Round [182] log likelihood: -2174.572246 EM: Round [183] log likelihood: -2174.570028 EM: Round [184] log likelihood: -2174.567829 EM: Round [185] log likelihood: -2174.565648 EM: Round [186] log likelihood: -2174.563485 EM: Round [187] log likelihood: -2174.561339 EM: Round [188] log likelihood: -2174.559211 EM: Round [189] log likelihood: -2174.557101 EM: Round [190] log likelihood: -2174.555008 EM: Round [191] log likelihood: -2174.552932 EM: Round [192] log likelihood: -2174.550873 EM: Round [193] log likelihood: -2174.548831 EM: Round [194] log likelihood: -2174.546806 EM: Round [195] log likelihood: -2174.544798 EM: Round [196] log likelihood: -2174.542805 EM: Round [197] log likelihood: -2174.540829 EM: Round [198] log likelihood: -2174.538869 EM: Round [199] log likelihood: -2174.536925 EM: Round [200] log likelihood: -2174.534997 EM: Round [201] log likelihood: -2174.533084 EM: Round [202] log likelihood: -2174.531187 EM: Round [203] log likelihood: -2174.529306 EM: Round [204] log likelihood: -2174.527439 EM: Round [205] log likelihood: -2174.525588 EM: Round [206] log likelihood: -2174.523752 EM: Round [207] log likelihood: -2174.521930 EM: Round [208] log likelihood: -2174.520123 EM: Round [209] log likelihood: -2174.518331 EM: Round [210] log likelihood: -2174.516553 EM: Round [211] log likelihood: -2174.514790 EM: Round [212] log likelihood: -2174.513040 EM: Round [213] log likelihood: -2174.511305 EM: Round [214] log likelihood: -2174.509584 EM: Round [215] log likelihood: -2174.507876 EM: Round [216] log likelihood: -2174.506182 EM: Round [217] log likelihood: -2174.504502 EM: Round [218] log likelihood: -2174.502835 EM: Round [219] log likelihood: -2174.501181 EM: Round [220] log likelihood: -2174.499541 EM: Round [221] log likelihood: -2174.497914 EM: Round [222] log likelihood: -2174.496299 EM: Round [223] log likelihood: -2174.494698 EM: Round [224] log likelihood: -2174.493109 EM: Round [225] log likelihood: -2174.491533 EM: Round [226] log likelihood: -2174.489970 EM: Round [227] log likelihood: -2174.488419 EM: Round [228] log likelihood: -2174.486880 EM: Round [229] log likelihood: -2174.485353 EM: Round [230] log likelihood: -2174.483839 EM: Round [231] log likelihood: -2174.482336 EM: Round [232] log likelihood: -2174.480846 EM: Round [233] log likelihood: -2174.479367 EM: Round [234] log likelihood: -2174.477900 EM: Round [235] log likelihood: -2174.476444 EM: Round [236] log likelihood: -2174.475000 EM: Round [237] log likelihood: -2174.473567 EM: Round [238] log likelihood: -2174.472146 EM: Round [239] log likelihood: -2174.470736 EM: Round [240] log likelihood: -2174.469336 EM: Round [241] log likelihood: -2174.467948 EM: Round [242] log likelihood: -2174.466571 EM: Round [243] log likelihood: -2174.465205 EM: Round [244] log likelihood: -2174.463849 EM: Round [245] log likelihood: -2174.462504 EM: Round [246] log likelihood: -2174.461169 EM: Round [247] log likelihood: -2174.459845 EM: Round [248] log likelihood: -2174.458531 EM: Round [249] log likelihood: -2174.457228 EM: Round [250] log likelihood: -2174.455935 EM: Round [251] log likelihood: -2174.454651 EM: Round [252] log likelihood: -2174.453378 EM: Round [253] log likelihood: -2174.452115 EM: Round [254] log likelihood: -2174.450862 EM: Round [255] log likelihood: -2174.449618 EM: Round [256] log likelihood: -2174.448384 EM: Round [257] log likelihood: -2174.447160 EM: Round [258] log likelihood: -2174.445945 EM: Round [259] log likelihood: -2174.444739 EM: Round [260] log likelihood: -2174.443543 EM: Round [261] log likelihood: -2174.442356 EM: Round [262] log likelihood: -2174.441179 EM: Round [263] log likelihood: -2174.440010 EM: Round [264] log likelihood: -2174.438851 EM: Round [265] log likelihood: -2174.437701 EM: Round [266] log likelihood: -2174.436559 EM: Round [267] log likelihood: -2174.435426 EM: Round [268] log likelihood: -2174.434302 EM: Round [269] log likelihood: -2174.433187 EM: Round [270] log likelihood: -2174.432081 EM: Round [271] log likelihood: -2174.430982 EM: Round [272] log likelihood: -2174.429893 EM: Round [273] log likelihood: -2174.428812 EM: Round [274] log likelihood: -2174.427739 EM: Round [275] log likelihood: -2174.426674 EM: Round [276] log likelihood: -2174.425618 EM: Round [277] log likelihood: -2174.424569 EM: Round [278] log likelihood: -2174.423529 EM: Round [279] log likelihood: -2174.422497 EM: Round [280] log likelihood: -2174.421472 EM: Round [281] log likelihood: -2174.420456 EM: Round [282] log likelihood: -2174.419447 EM: Round [283] log likelihood: -2174.418446 EM: Round [284] log likelihood: -2174.417453 EM: Round [285] log likelihood: -2174.416467 EM: Round [286] log likelihood: -2174.415489 EM: Round [287] log likelihood: -2174.414518 EM: Round [288] log likelihood: -2174.413555 EM: Round [289] log likelihood: -2174.412599 EM: Round [290] log likelihood: -2174.411651 EM: Round [291] log likelihood: -2174.410709 EM: Round [292] log likelihood: -2174.409775 EM: Round [293] log likelihood: -2174.408848 EM: Round [294] log likelihood: -2174.407928 EM: Round [295] log likelihood: -2174.407015 EM: Round [296] log likelihood: -2174.406109 EM: Round [297] log likelihood: -2174.405210 EM: Round [298] log likelihood: -2174.404318 EM: Round [299] log likelihood: -2174.403433 EM: Round [300] log likelihood: -2174.402554 EM: Round [301] log likelihood: -2174.401682 EM: Round [302] log likelihood: -2174.400817 EM: Round [303] log likelihood: -2174.399958 EM: Round [304] log likelihood: -2174.399106 EM: Round [305] log likelihood: -2174.398260 EM: Round [306] log likelihood: -2174.397420 EM: Round [307] log likelihood: -2174.396587 EM: Round [308] log likelihood: -2174.395760 EM: Round [309] log likelihood: -2174.394940 EM: Round [310] log likelihood: -2174.394126 EM: Round [311] log likelihood: -2174.393318 EM: Round [312] log likelihood: -2174.392516 EM: Round [313] log likelihood: -2174.391720 EM: Round [314] log likelihood: -2174.390930 EM: Round [315] log likelihood: -2174.390146 EM: Round [316] log likelihood: -2174.389368 EM: Round [317] log likelihood: -2174.388596 EM: Round [318] log likelihood: -2174.387830 EM: Round [319] log likelihood: -2174.387069 EM: Round [320] log likelihood: -2174.386314 EM: Round [321] log likelihood: -2174.385565 EM: Round [322] log likelihood: -2174.384822 EM: Round [323] log likelihood: -2174.384084 EM: Round [324] log likelihood: -2174.383352 EM: Round [325] log likelihood: -2174.382625 EM: Round [326] log likelihood: -2174.381904 EM: Round [327] log likelihood: -2174.381188 EM: Round [328] log likelihood: -2174.380477 EM: Round [329] log likelihood: -2174.379772 EM: Round [330] log likelihood: -2174.379072 EM: Round [331] log likelihood: -2174.378378 EM: Round [332] log likelihood: -2174.377689 EM: Round [333] log likelihood: -2174.377004 EM: Round [334] log likelihood: -2174.376325 EM: Round [335] log likelihood: -2174.375651 EM: Round [336] log likelihood: -2174.374983 EM: Round [337] log likelihood: -2174.374319 EM: Round [338] log likelihood: -2174.373660 EM: Round [339] log likelihood: -2174.373006 EM: Round [340] log likelihood: -2174.372357 EM: Round [341] log likelihood: -2174.371713 EM: Round [342] log likelihood: -2174.371073 EM: Round [343] log likelihood: -2174.370439 EM: Round [344] log likelihood: -2174.369809 EM: Round [345] log likelihood: -2174.369184 EM: Round [346] log likelihood: -2174.368563 EM: Round [347] log likelihood: -2174.367947 EM: Round [348] log likelihood: -2174.367336 EM: Round [349] log likelihood: -2174.366730 EM: Round [350] log likelihood: -2174.366127 EM: Round [351] log likelihood: -2174.365530 EM: Round [352] log likelihood: -2174.364937 EM: Round [353] log likelihood: -2174.364348 EM: Round [354] log likelihood: -2174.363764 EM: Round [355] log likelihood: -2174.363184 EM: Round [356] log likelihood: -2174.362608 EM: Round [357] log likelihood: -2174.362037 EM: Round [358] log likelihood: -2174.361470 EM: Round [359] log likelihood: -2174.360907 EM: Round [360] log likelihood: -2174.360348 EM: Round [361] log likelihood: -2174.359793 EM: Round [362] log likelihood: -2174.359243 EM: Round [363] log likelihood: -2174.358697 EM: Round [364] log likelihood: -2174.358154 EM: Round [365] log likelihood: -2174.357616 EM: Round [366] log likelihood: -2174.357082 EM: Round [367] log likelihood: -2174.356552 EM: Round [368] log likelihood: -2174.356025 EM: Round [369] log likelihood: -2174.355503 EM: Round [370] log likelihood: -2174.354985 EM: Round [371] log likelihood: -2174.354470 EM: Round [372] log likelihood: -2174.353959 EM: Round [373] log likelihood: -2174.353452 EM: Round [374] log likelihood: -2174.352949 EM: Round [375] log likelihood: -2174.352449 EM: Round [376] log likelihood: -2174.351953 EM: Round [377] log likelihood: -2174.351461 EM: Round [378] log likelihood: -2174.350973 EM: Round [379] log likelihood: -2174.350488 EM: Round [380] log likelihood: -2174.350006 EM: Round [381] log likelihood: -2174.349529 EM: Round [382] log likelihood: -2174.349054 EM: Round [383] log likelihood: -2174.348584 EM: Round [384] log likelihood: -2174.348116 EM: Round [385] log likelihood: -2174.347653 EM: Round [386] log likelihood: -2174.347192 EM: Round [387] log likelihood: -2174.346735 EM: Round [388] log likelihood: -2174.346282 EM: Round [389] log likelihood: -2174.345832 EM: Round [390] log likelihood: -2174.345385 EM: Round [391] log likelihood: -2174.344941 EM: Round [392] log likelihood: -2174.344501 EM: Round [393] log likelihood: -2174.344064 EM: Round [394] log likelihood: -2174.343630 EM: Round [395] log likelihood: -2174.343200 EM: Round [396] log likelihood: -2174.342772 EM: Round [397] log likelihood: -2174.342348 EM: Round [398] log likelihood: -2174.341927 EM: Round [399] log likelihood: -2174.341509 EM: Round [400] log likelihood: -2174.341094 EM: Round [401] log likelihood: -2174.340682 EM: Round [402] log likelihood: -2174.340273 EM: Round [403] log likelihood: -2174.339867 EM: Round [404] log likelihood: -2174.339464 EM: Round [405] log likelihood: -2174.339064 EM: Round [406] log likelihood: -2174.338667 EM: Round [407] log likelihood: -2174.338273 EM: Round [408] log likelihood: -2174.337882 EM: Round [409] log likelihood: -2174.337494 EM: Round [410] log likelihood: -2174.337109 EM: Round [411] log likelihood: -2174.336726 EM: Round [412] log likelihood: -2174.336346 EM: Round [413] log likelihood: -2174.335969 EM: Round [414] log likelihood: -2174.335595 EM: Round [415] log likelihood: -2174.335224 EM: Round [416] log likelihood: -2174.334855 EM: Round [417] log likelihood: -2174.334489 EM: Round [418] log likelihood: -2174.334126 EM: Round [419] log likelihood: -2174.333765 EM: Round [420] log likelihood: -2174.333407 EM: Round [421] log likelihood: -2174.333052 EM: Round [422] log likelihood: -2174.332699 EM: Round [423] log likelihood: -2174.332349 EM: Round [424] log likelihood: -2174.332002 EM: Round [425] log likelihood: -2174.331657 EM: Round [426] log likelihood: -2174.331314 EM: Round [427] log likelihood: -2174.330974 EM: Round [428] log likelihood: -2174.330637 EM: Round [429] log likelihood: -2174.330302 EM: Round [430] log likelihood: -2174.329969 EM: Round [431] log likelihood: -2174.329639 EM: Round [432] log likelihood: -2174.329311 EM: Round [433] log likelihood: -2174.328986 EM: Round [434] log likelihood: -2174.328663 EM: Round [435] log likelihood: -2174.328343 EM: Round [436] log likelihood: -2174.328025 EM: Round [437] log likelihood: -2174.327709 EM: Round [438] log likelihood: -2174.327395 EM: Round [439] log likelihood: -2174.327084 EM: Round [440] log likelihood: -2174.326775 EM: Round [441] log likelihood: -2174.326468 EM: Round [442] log likelihood: -2174.326164 EM: Round [443] log likelihood: -2174.325862 EM: Round [444] log likelihood: -2174.325562 EM: Round [445] log likelihood: -2174.325264 EM: Round [446] log likelihood: -2174.324968 EM: Round [447] log likelihood: -2174.324675 EM: Round [448] log likelihood: -2174.324383 EM: Round [449] log likelihood: -2174.324094 EM: Round [450] log likelihood: -2174.323807 EM: Round [451] log likelihood: -2174.323522 EM: Round [452] log likelihood: -2174.323239 EM: Round [453] log likelihood: -2174.322958 EM: Round [454] log likelihood: -2174.322680 EM: Round [455] log likelihood: -2174.322403 EM: Round [456] log likelihood: -2174.322128 EM: Round [457] log likelihood: -2174.321855 EM: Round [458] log likelihood: -2174.321585 EM: Round [459] log likelihood: -2174.321316 EM: Round [460] log likelihood: -2174.321049 EM: Round [461] log likelihood: -2174.320784 EM: Round [462] log likelihood: -2174.320521 EM: Round [463] log likelihood: -2174.320260 EM: Round [464] log likelihood: -2174.320001 EM: Round [465] log likelihood: -2174.319744 EM: Round [466] log likelihood: -2174.319489 EM: Round [467] log likelihood: -2174.319235 EM: Round [468] log likelihood: -2174.318984 EM: Round [469] log likelihood: -2174.318734 EM: Round [470] log likelihood: -2174.318486 EM: Round [471] log likelihood: -2174.318240 EM: Round [472] log likelihood: -2174.317995 EM: Round [473] log likelihood: -2174.317753 EM: Round [474] log likelihood: -2174.317512 EM: Round [475] log likelihood: -2174.317273 EM: Round [476] log likelihood: -2174.317036 EM: Round [477] log likelihood: -2174.316800 EM: Round [478] log likelihood: -2174.316566 EM: Round [479] log likelihood: -2174.316334 EM: Round [480] log likelihood: -2174.316104 EM: Round [481] log likelihood: -2174.315875 EM: Round [482] log likelihood: -2174.315648 EM: Round [483] log likelihood: -2174.315422 EM: Round [484] log likelihood: -2174.315199 EM: Round [485] log likelihood: -2174.314976 EM: Round [486] log likelihood: -2174.314756 EM: Round [487] log likelihood: -2174.314537 EM: Round [488] log likelihood: -2174.314319 EM: Round [489] log likelihood: -2174.314104 EM: Round [490] log likelihood: -2174.313889 EM: Round [491] log likelihood: -2174.313677 EM: Round [492] log likelihood: -2174.313466 EM: Round [493] log likelihood: -2174.313256 EM: Round [494] log likelihood: -2174.313048 EM: Round [495] log likelihood: -2174.312841 EM: Round [496] log likelihood: -2174.312636 EM: Round [497] log likelihood: -2174.312433 EM: Round [498] log likelihood: -2174.312231 EM: Round [499] log likelihood: -2174.312030 EM: Round [500] log likelihood: -2174.311831 EM: Round [501] log likelihood: -2174.311633 EM: Round [502] log likelihood: -2174.311437 EM: Round [503] log likelihood: -2174.311242 EM: Round [504] log likelihood: -2174.311049 EM: Round [505] log likelihood: -2174.310857 EM: Round [506] log likelihood: -2174.310666 EM: Round [507] log likelihood: -2174.310477 EM: Round [508] log likelihood: -2174.310289 EM: Round [509] log likelihood: -2174.310103 EM: Round [510] log likelihood: -2174.309917 EM: Round [511] log likelihood: -2174.309734 EM: Round [512] log likelihood: -2174.309551 EM: Round [513] log likelihood: -2174.309370 EM: Round [514] log likelihood: -2174.309190 EM: Round [515] log likelihood: -2174.309012 EM: Round [516] log likelihood: -2174.308834 EM: Round [517] log likelihood: -2174.308658 EM: Round [518] log likelihood: -2174.308484 EM: Round [519] log likelihood: -2174.308310 EM: Round [520] log likelihood: -2174.308138 EM: Round [521] log likelihood: -2174.307967 EM: Round [522] log likelihood: -2174.307798 EM: Round [523] log likelihood: -2174.307629 EM: Round [524] log likelihood: -2174.307462 EM: Round [525] log likelihood: -2174.307296 EM: Round [526] log likelihood: -2174.307131 EM: Round [527] log likelihood: -2174.306968 EM: Round [528] log likelihood: -2174.306805 EM: Round [529] log likelihood: -2174.306644 EM: Round [530] log likelihood: -2174.306484 EM: Round [531] log likelihood: -2174.306325 EM: Round [532] log likelihood: -2174.306167 EM: Round [533] log likelihood: -2174.306011 EM: Round [534] log likelihood: -2174.305855 EM: Round [535] log likelihood: -2174.305701 EM: Round [536] log likelihood: -2174.305548 EM: Round [537] log likelihood: -2174.305396 EM: Round [538] log likelihood: -2174.305245 EM: Round [539] log likelihood: -2174.305095 EM: Round [540] log likelihood: -2174.304946 EM: Round [541] log likelihood: -2174.304798 EM: Round [542] log likelihood: -2174.304651 EM: Round [543] log likelihood: -2174.304506 EM: Round [544] log likelihood: -2174.304361 EM: Round [545] log likelihood: -2174.304218 EM: Round [546] log likelihood: -2174.304075 EM: Round [547] log likelihood: -2174.303934 EM: Round [548] log likelihood: -2174.303793 EM: Round [549] log likelihood: -2174.303654 EM: Round [550] log likelihood: -2174.303515 EM: Round [551] log likelihood: -2174.303378 EM: Round [552] log likelihood: -2174.303242 EM: Round [553] log likelihood: -2174.303106 EM: Round [554] log likelihood: -2174.302972 EM: Round [555] log likelihood: -2174.302838 EM: Round [556] log likelihood: -2174.302706 EM: Round [557] log likelihood: -2174.302574 EM: Round [558] log likelihood: -2174.302444 EM: Round [559] log likelihood: -2174.302314 EM: Round [560] log likelihood: -2174.302185 EM: Round [561] log likelihood: -2174.302058 EM: Round [562] log likelihood: -2174.301931 EM: Round [563] log likelihood: -2174.301805 EM: Round [564] log likelihood: -2174.301680 EM: Round [565] log likelihood: -2174.301556 EM: Round [566] log likelihood: -2174.301432 EM: Round [567] log likelihood: -2174.301310 EM: Round [568] log likelihood: -2174.301189 EM: Round [569] log likelihood: -2174.301068 EM: Round [570] log likelihood: -2174.300948 EM: Round [571] log likelihood: -2174.300830 EM: Round [572] log likelihood: -2174.300712 EM: Round [573] log likelihood: -2174.300594 EM: Round [574] log likelihood: -2174.300478 EM: Round [575] log likelihood: -2174.300363 EM: Round [576] log likelihood: -2174.300248 EM: Round [577] log likelihood: -2174.300134 EM: Round [578] log likelihood: -2174.300021 EM: Round [579] log likelihood: -2174.299909 EM: Round [580] log likelihood: -2174.299798 EM: Round [581] log likelihood: -2174.299687 EM: Round [582] log likelihood: -2174.299578 EM: Round [583] log likelihood: -2174.299469 EM: Round [584] log likelihood: -2174.299361 EM: Round [585] log likelihood: -2174.299253 EM: Round [586] log likelihood: -2174.299147 EM: Round [587] log likelihood: -2174.299041 EM: Round [588] log likelihood: -2174.298936 EM: Round [589] log likelihood: -2174.298831 EM: Round [590] log likelihood: -2174.298728 EM: Round [591] log likelihood: -2174.298625 EM: Round [592] log likelihood: -2174.298523 EM: Round [593] log likelihood: -2174.298422 EM: Round [594] log likelihood: -2174.298321 EM: Round [595] log likelihood: -2174.298221 EM: Stopping iterations at round 595 due to insufficient improvement in likelihood. [bam_sort_core] merging from 0 files and 8 in-memory blocks... -extracting read coordinates from /tmp/nxf.Wyv1hwOhSd/1173_G2E_T1_RNA_SLD_01_A23T55JLT4_2.consolidated.bam into /tmp/nxf.Wyv1hwOhSd/1173_G2E_T1_RNA_SLD_01_A23T55JLT4_2.consolidated.bam.read_coords CMD: touch /tmp/nxf.Wyv1hwOhSd/1173_G2E_T1_RNA_SLD_01_A23T55JLT4_2.consolidated.bam.read_coords.ok CMD: /usr/bin/sort --parallel=1 -S10G -T . -k1,1 -k2,2 -k4,4n /tmp/nxf.Wyv1hwOhSd/1173_G2E_T1_RNA_SLD_01_A23T55JLT4_2.consolidated.bam.read_coords > /tmp/nxf.Wyv1hwOhSd/1173_G2E_T1_RNA_SLD_01_A23T55JLT4_2.consolidated.bam.read_coords.sort_by_readname CMD: /usr/bin/sort --parallel=1 -S10G -T . -k1,1 -k3,3n /tmp/nxf.Wyv1hwOhSd/1173_G2E_T1_RNA_SLD_01_A23T55JLT4_2.consolidated.bam.frag_coords > /tmp/nxf.Wyv1hwOhSd/1173_G2E_T1_RNA_SLD_01_A23T55JLT4_2.consolidated.bam.frag_coords.coord_sorted CMD: /usr/local/src/STAR-Fusion/FusionInspector/FusionFilter/util/blast_filter.pl --fusion_preds /tmp/nxf.Wyv1hwOhSd/fi_workdir/1173_G2E_T1_RNA_SLD_01_A23T55JLT4_2.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo --genome_lib_dir ctat_genome_lib_build_dir CMD: /usr/local/src/STAR-Fusion/FusionInspector/FusionFilter/util/promiscuity_filter.pl --fusion_preds /tmp/nxf.Wyv1hwOhSd/fi_workdir/1173_G2E_T1_RNA_SLD_01_A23T55JLT4_2.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo.post_blast_filter --genome_lib_dir ctat_genome_lib_build_dir --max_promiscuity 10 --min_pct_dom_promiscuity 50 CMD: cp /tmp/nxf.Wyv1hwOhSd/fi_workdir/1173_G2E_T1_RNA_SLD_01_A23T55JLT4_2.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo.post_blast_filter.post_promisc_filter /tmp/nxf.Wyv1hwOhSd/1173_G2E_T1_RNA_SLD_01_A23T55JLT4_2.post_blast_and_promiscuity_filter -done, see /tmp/nxf.Wyv1hwOhSd/1173_G2E_T1_RNA_SLD_01_A23T55JLT4_2.post_blast_and_promiscuity_filter.annot_filter.pass EM: Starting log likelihood: -2062.152484 EM: Round [1] log likelihood: -2062.138401 EM: Round [2] log likelihood: -2062.124516 EM: Round [3] log likelihood: -2062.110826 EM: Round [4] log likelihood: -2062.097325 EM: Round [5] log likelihood: -2062.084011 EM: Round [6] log likelihood: -2062.070880 EM: Round [7] log likelihood: -2062.057927 EM: Round [8] log likelihood: -2062.045150 EM: Round [9] log likelihood: -2062.032545 EM: Round [10] log likelihood: -2062.020108 EM: Round [11] log likelihood: -2062.007836 EM: Round [12] log likelihood: -2061.995726 EM: Round [13] log likelihood: -2061.983775 EM: Round [14] log likelihood: -2061.971981 EM: Round [15] log likelihood: -2061.960339 EM: Round [16] log likelihood: -2061.948847 EM: Round [17] log likelihood: -2061.937502 EM: Round [18] log likelihood: -2061.926302 EM: Round [19] log likelihood: -2061.915244 EM: Round [20] log likelihood: -2061.904326 EM: Round [21] log likelihood: -2061.893544 EM: Round [22] log likelihood: -2061.882897 EM: Round [23] log likelihood: -2061.872382 EM: Round [24] log likelihood: -2061.861997 EM: Round [25] log likelihood: -2061.851739 EM: Round [26] log likelihood: -2061.841607 EM: Round [27] log likelihood: -2061.831598 EM: Round [28] log likelihood: -2061.821709 EM: Round [29] log likelihood: -2061.811940 EM: Round [30] log likelihood: -2061.802288 EM: Round [31] log likelihood: -2061.792751 EM: Round [32] log likelihood: -2061.783327 EM: Round [33] log likelihood: -2061.774014 EM: Round [34] log likelihood: -2061.764811 EM: Round [35] log likelihood: -2061.755716 EM: Round [36] log likelihood: -2061.746726 EM: Round [37] log likelihood: -2061.737841 EM: Round [38] log likelihood: -2061.729058 EM: Round [39] log likelihood: -2061.720376 EM: Round [40] log likelihood: -2061.711794 EM: Round [41] log likelihood: -2061.703309 EM: Round [42] log likelihood: -2061.694920 EM: Round [43] log likelihood: -2061.686627 EM: Round [44] log likelihood: -2061.678427 EM: Round [45] log likelihood: -2061.670318 EM: Round [46] log likelihood: -2061.662300 EM: Round [47] log likelihood: -2061.654372 EM: Round [48] log likelihood: -2061.646531 EM: Round [49] log likelihood: -2061.638776 EM: Round [50] log likelihood: -2061.631107 EM: Round [51] log likelihood: -2061.623522 EM: Round [52] log likelihood: -2061.616019 EM: Round [53] log likelihood: -2061.608598 EM: Round [54] log likelihood: -2061.601258 EM: Round [55] log likelihood: -2061.593996 EM: Round [56] log likelihood: -2061.586813 EM: Round [57] log likelihood: -2061.579706 EM: Round [58] log likelihood: -2061.572676 EM: Round [59] log likelihood: -2061.565720 EM: Round [60] log likelihood: -2061.558838 EM: Round [61] log likelihood: -2061.552028 EM: Round [62] log likelihood: -2061.545290 EM: Round [63] log likelihood: -2061.538623 EM: Round [64] log likelihood: -2061.532026 EM: Round [65] log likelihood: -2061.525497 EM: Round [66] log likelihood: -2061.519036 EM: Round [67] log likelihood: -2061.512642 EM: Round [68] log likelihood: -2061.506314 EM: Round [69] log likelihood: -2061.500051 EM: Round [70] log likelihood: -2061.493853 EM: Round [71] log likelihood: -2061.487718 EM: Round [72] log likelihood: -2061.481645 EM: Round [73] log likelihood: -2061.475634 EM: Round [74] log likelihood: -2061.469684 EM: Round [75] log likelihood: -2061.463794 EM: Round [76] log likelihood: -2061.457963 EM: Round [77] log likelihood: -2061.452191 EM: Round [78] log likelihood: -2061.446477 EM: Round [79] log likelihood: -2061.440820 EM: Round [80] log likelihood: -2061.435219 EM: Round [81] log likelihood: -2061.429674 EM: Round [82] log likelihood: -2061.424183 EM: Round [83] log likelihood: -2061.418747 EM: Round [84] log likelihood: -2061.413365 EM: Round [85] log likelihood: -2061.408035 EM: Round [86] log likelihood: -2061.402757 EM: Round [87] log likelihood: -2061.397532 EM: Round [88] log likelihood: -2061.392357 EM: Round [89] log likelihood: -2061.387232 EM: Round [90] log likelihood: -2061.382157 EM: Round [91] log likelihood: -2061.377131 EM: Round [92] log likelihood: -2061.372154 EM: Round [93] log likelihood: -2061.367224 EM: Round [94] log likelihood: -2061.362342 EM: Round [95] log likelihood: -2061.357507 EM: Round [96] log likelihood: -2061.352718 EM: Round [97] log likelihood: -2061.347974 EM: Round [98] log likelihood: -2061.343276 EM: Round [99] log likelihood: -2061.338622 EM: Round [100] log likelihood: -2061.334012 EM: Round [101] log likelihood: -2061.329446 EM: Round [102] log likelihood: -2061.324923 EM: Round [103] log likelihood: -2061.320442 EM: Round [104] log likelihood: -2061.316003 EM: Round [105] log likelihood: -2061.311606 EM: Round [106] log likelihood: -2061.307250 EM: Round [107] log likelihood: -2061.302934 EM: Round [108] log likelihood: -2061.298659 EM: Round [109] log likelihood: -2061.294423 EM: Round [110] log likelihood: -2061.290227 EM: Round [111] log likelihood: -2061.286069 EM: Round [112] log likelihood: -2061.281950 EM: Round [113] log likelihood: -2061.277868 EM: Round [114] log likelihood: -2061.273824 EM: Round [115] log likelihood: -2061.269818 EM: Round [116] log likelihood: -2061.265847 EM: Round [117] log likelihood: -2061.261913 EM: Round [118] log likelihood: -2061.258015 EM: Round [119] log likelihood: -2061.254152 EM: Round [120] log likelihood: -2061.250325 EM: Round [121] log likelihood: -2061.246532 EM: Round [122] log likelihood: -2061.242773 EM: Round [123] log likelihood: -2061.239048 EM: Round [124] log likelihood: -2061.235357 EM: Round [125] log likelihood: -2061.231699 EM: Round [126] log likelihood: -2061.228074 EM: Round [127] log likelihood: -2061.224481 EM: Round [128] log likelihood: -2061.220920 EM: Round [129] log likelihood: -2061.217391 EM: Round [130] log likelihood: -2061.213894 EM: Round [131] log likelihood: -2061.210428 EM: Round [132] log likelihood: -2061.206992 EM: Round [133] log likelihood: -2061.203587 EM: Round [134] log likelihood: -2061.200212 EM: Round [135] log likelihood: -2061.196867 EM: Round [136] log likelihood: -2061.193552 EM: Round [137] log likelihood: -2061.190265 EM: Round [138] log likelihood: -2061.187008 EM: Round [139] log likelihood: -2061.183779 EM: Round [140] log likelihood: -2061.180578 EM: Round [141] log likelihood: -2061.177406 EM: Round [142] log likelihood: -2061.174261 EM: Round [143] log likelihood: -2061.171143 EM: Round [144] log likelihood: -2061.168053 EM: Round [145] log likelihood: -2061.164989 EM: Round [146] log likelihood: -2061.161953 EM: Round [147] log likelihood: -2061.158942 EM: Round [148] log likelihood: -2061.155957 EM: Round [149] log likelihood: -2061.152999 EM: Round [150] log likelihood: -2061.150066 EM: Round [151] log likelihood: -2061.147158 EM: Round [152] log likelihood: -2061.144275 EM: Round [153] log likelihood: -2061.141417 EM: Round [154] log likelihood: -2061.138583 EM: Round [155] log likelihood: -2061.135774 EM: Round [156] log likelihood: -2061.132989 EM: Round [157] log likelihood: -2061.130227 EM: Round [158] log likelihood: -2061.127489 EM: Round [159] log likelihood: -2061.124775 EM: Round [160] log likelihood: -2061.122083 EM: Round [161] log likelihood: -2061.119415 EM: Round [162] log likelihood: -2061.116769 EM: Round [163] log likelihood: -2061.114145 EM: Round [164] log likelihood: -2061.111544 EM: Round [165] log likelihood: -2061.108965 EM: Round [166] log likelihood: -2061.106407 EM: Round [167] log likelihood: -2061.103871 EM: Round [168] log likelihood: -2061.101357 EM: Round [169] log likelihood: -2061.098863 EM: Round [170] log likelihood: -2061.096391 EM: Round [171] log likelihood: -2061.093939 EM: Round [172] log likelihood: -2061.091508 EM: Round [173] log likelihood: -2061.089097 EM: Round [174] log likelihood: -2061.086706 EM: Round [175] log likelihood: -2061.084335 EM: Round [176] log likelihood: -2061.081984 EM: Round [177] log likelihood: -2061.079653 EM: Round [178] log likelihood: -2061.077341 EM: Round [179] log likelihood: -2061.075048 EM: Round [180] log likelihood: -2061.072774 EM: Round [181] log likelihood: -2061.070519 EM: Round [182] log likelihood: -2061.068283 EM: Round [183] log likelihood: -2061.066065 EM: Round [184] log likelihood: -2061.063866 EM: Round [185] log likelihood: -2061.061685 EM: Round [186] log likelihood: -2061.059521 EM: Round [187] log likelihood: -2061.057376 EM: Round [188] log likelihood: -2061.055248 EM: Round [189] log likelihood: -2061.053138 EM: Round [190] log likelihood: -2061.051045 EM: Round [191] log likelihood: -2061.048969 EM: Round [192] log likelihood: -2061.046910 EM: Round [193] log likelihood: -2061.044868 EM: Round [194] log likelihood: -2061.042843 EM: Round [195] log likelihood: -2061.040834 EM: Round [196] log likelihood: -2061.038842 EM: Round [197] log likelihood: -2061.036866 EM: Round [198] log likelihood: -2061.034906 EM: Round [199] log likelihood: -2061.032962 EM: Round [200] log likelihood: -2061.031034 EM: Round [201] log likelihood: -2061.029121 EM: Round [202] log likelihood: -2061.027224 EM: Round [203] log likelihood: -2061.025343 EM: Round [204] log likelihood: -2061.023476 EM: Round [205] log likelihood: -2061.021625 EM: Round [206] log likelihood: -2061.019788 EM: Round [207] log likelihood: -2061.017967 EM: Round [208] log likelihood: -2061.016160 EM: Round [209] log likelihood: -2061.014368 EM: Round [210] log likelihood: -2061.012590 EM: Round [211] log likelihood: -2061.010826 EM: Round [212] log likelihood: -2061.009077 EM: Round [213] log likelihood: -2061.007342 EM: Round [214] log likelihood: -2061.005620 EM: Round [215] log likelihood: -2061.003913 EM: Round [216] log likelihood: -2061.002219 EM: Round [217] log likelihood: -2061.000539 EM: Round [218] log likelihood: -2060.998872 EM: Round [219] log likelihood: -2060.997218 EM: Round [220] log likelihood: -2060.995578 EM: Round [221] log likelihood: -2060.993951 EM: Round [222] log likelihood: -2060.992336 EM: Round [223] log likelihood: -2060.990735 EM: Round [224] log likelihood: -2060.989146 EM: Round [225] log likelihood: -2060.987570 EM: Round [226] log likelihood: -2060.986007 EM: Round [227] log likelihood: -2060.984456 EM: Round [228] log likelihood: -2060.982917 EM: Round [229] log likelihood: -2060.981390 EM: Round [230] log likelihood: -2060.979876 EM: Round [231] log likelihood: -2060.978373 EM: Round [232] log likelihood: -2060.976882 EM: Round [233] log likelihood: -2060.975404 EM: Round [234] log likelihood: -2060.973936 EM: Round [235] log likelihood: -2060.972481 EM: Round [236] log likelihood: -2060.971037 EM: Round [237] log likelihood: -2060.969604 EM: Round [238] log likelihood: -2060.968183 EM: Round [239] log likelihood: -2060.966772 EM: Round [240] log likelihood: -2060.965373 EM: Round [241] log likelihood: -2060.963985 EM: Round [242] log likelihood: -2060.962608 EM: Round [243] log likelihood: -2060.961241 EM: Round [244] log likelihood: -2060.959886 EM: Round [245] log likelihood: -2060.958541 EM: Round [246] log likelihood: -2060.957206 EM: Round [247] log likelihood: -2060.955882 EM: Round [248] log likelihood: -2060.954568 EM: Round [249] log likelihood: -2060.953265 EM: Round [250] log likelihood: -2060.951971 EM: Round [251] log likelihood: -2060.950688 EM: Round [252] log likelihood: -2060.949415 EM: Round [253] log likelihood: -2060.948152 EM: Round [254] log likelihood: -2060.946898 EM: Round [255] log likelihood: -2060.945655 EM: Round [256] log likelihood: -2060.944421 EM: Round [257] log likelihood: -2060.943196 EM: Round [258] log likelihood: -2060.941982 EM: Round [259] log likelihood: -2060.940776 EM: Round [260] log likelihood: -2060.939580 EM: Round [261] log likelihood: -2060.938393 EM: Round [262] log likelihood: -2060.937216 EM: Round [263] log likelihood: -2060.936047 EM: Round [264] log likelihood: -2060.934888 EM: Round [265] log likelihood: -2060.933737 EM: Round [266] log likelihood: -2060.932596 EM: Round [267] log likelihood: -2060.931463 EM: Round [268] log likelihood: -2060.930339 EM: Round [269] log likelihood: -2060.929224 EM: Round [270] log likelihood: -2060.928117 EM: Round [271] log likelihood: -2060.927019 EM: Round [272] log likelihood: -2060.925930 EM: Round [273] log likelihood: -2060.924848 EM: Round [274] log likelihood: -2060.923776 EM: Round [275] log likelihood: -2060.922711 EM: Round [276] log likelihood: -2060.921654 EM: Round [277] log likelihood: -2060.920606 EM: Round [278] log likelihood: -2060.919566 EM: Round [279] log likelihood: -2060.918534 EM: Round [280] log likelihood: -2060.917509 EM: Round [281] log likelihood: -2060.916493 EM: Round [282] log likelihood: -2060.915484 EM: Round [283] log likelihood: -2060.914483 EM: Round [284] log likelihood: -2060.913490 EM: Round [285] log likelihood: -2060.912504 EM: Round [286] log likelihood: -2060.911526 EM: Round [287] log likelihood: -2060.910555 EM: Round [288] log likelihood: -2060.909592 EM: Round [289] log likelihood: -2060.908636 EM: Round [290] log likelihood: -2060.907688 EM: Round [291] log likelihood: -2060.906746 EM: Round [292] log likelihood: -2060.905812 EM: Round [293] log likelihood: -2060.904885 EM: Round [294] log likelihood: -2060.903965 EM: Round [295] log likelihood: -2060.903052 EM: Round [296] log likelihood: -2060.902146 EM: Round [297] log likelihood: -2060.901247 EM: Round [298] log likelihood: -2060.900355 EM: Round [299] log likelihood: -2060.899470 EM: Round [300] log likelihood: -2060.898591 EM: Round [301] log likelihood: -2060.897719 EM: Round [302] log likelihood: -2060.896853 EM: Round [303] log likelihood: -2060.895995 EM: Round [304] log likelihood: -2060.895142 EM: Round [305] log likelihood: -2060.894297 EM: Round [306] log likelihood: -2060.893457 EM: Round [307] log likelihood: -2060.892624 EM: Round [308] log likelihood: -2060.891797 EM: Round [309] log likelihood: -2060.890977 EM: Round [310] log likelihood: -2060.890163 EM: Round [311] log likelihood: -2060.889355 EM: Round [312] log likelihood: -2060.888553 EM: Round [313] log likelihood: -2060.887757 EM: Round [314] log likelihood: -2060.886967 EM: Round [315] log likelihood: -2060.886183 EM: Round [316] log likelihood: -2060.885405 EM: Round [317] log likelihood: -2060.884633 EM: Round [318] log likelihood: -2060.883866 EM: Round [319] log likelihood: -2060.883106 EM: Round [320] log likelihood: -2060.882351 EM: Round [321] log likelihood: -2060.881602 EM: Round [322] log likelihood: -2060.880859 EM: Round [323] log likelihood: -2060.880121 EM: Round [324] log likelihood: -2060.879389 EM: Round [325] log likelihood: -2060.878662 EM: Round [326] log likelihood: -2060.877941 EM: Round [327] log likelihood: -2060.877225 EM: Round [328] log likelihood: -2060.876514 EM: Round [329] log likelihood: -2060.875809 EM: Round [330] log likelihood: -2060.875109 EM: Round [331] log likelihood: -2060.874415 EM: Round [332] log likelihood: -2060.873725 EM: Round [333] log likelihood: -2060.873041 EM: Round [334] log likelihood: -2060.872362 EM: Round [335] log likelihood: -2060.871688 EM: Round [336] log likelihood: -2060.871019 EM: Round [337] log likelihood: -2060.870356 EM: Round [338] log likelihood: -2060.869697 EM: Round [339] log likelihood: -2060.869043 EM: Round [340] log likelihood: -2060.868394 EM: Round [341] log likelihood: -2060.867749 EM: Round [342] log likelihood: -2060.867110 EM: Round [343] log likelihood: -2060.866476 EM: Round [344] log likelihood: -2060.865846 EM: Round [345] log likelihood: -2060.865221 EM: Round [346] log likelihood: -2060.864600 EM: Round [347] log likelihood: -2060.863984 EM: Round [348] log likelihood: -2060.863373 EM: Round [349] log likelihood: -2060.862766 EM: Round [350] log likelihood: -2060.862164 EM: Round [351] log likelihood: -2060.861567 EM: Round [352] log likelihood: -2060.860974 EM: Round [353] log likelihood: -2060.860385 EM: Round [354] log likelihood: -2060.859800 EM: Round [355] log likelihood: -2060.859220 EM: Round [356] log likelihood: -2060.858645 EM: Round [357] log likelihood: -2060.858073 EM: Round [358] log likelihood: -2060.857506 EM: Round [359] log likelihood: -2060.856943 EM: Round [360] log likelihood: -2060.856385 EM: Round [361] log likelihood: -2060.855830 EM: Round [362] log likelihood: -2060.855280 EM: Round [363] log likelihood: -2060.854734 EM: Round [364] log likelihood: -2060.854191 EM: Round [365] log likelihood: -2060.853653 EM: Round [366] log likelihood: -2060.853119 EM: Round [367] log likelihood: -2060.852589 EM: Round [368] log likelihood: -2060.852062 EM: Round [369] log likelihood: -2060.851540 EM: Round [370] log likelihood: -2060.851021 EM: Round [371] log likelihood: -2060.850507 EM: Round [372] log likelihood: -2060.849996 EM: Round [373] log likelihood: -2060.849489 EM: Round [374] log likelihood: -2060.848986 EM: Round [375] log likelihood: -2060.848486 EM: Round [376] log likelihood: -2060.847990 EM: Round [377] log likelihood: -2060.847498 EM: Round [378] log likelihood: -2060.847009 EM: Round [379] log likelihood: -2060.846525 EM: Round [380] log likelihood: -2060.846043 EM: Round [381] log likelihood: -2060.845565 EM: Round [382] log likelihood: -2060.845091 EM: Round [383] log likelihood: -2060.844621 EM: Round [384] log likelihood: -2060.844153 EM: Round [385] log likelihood: -2060.843690 EM: Round [386] log likelihood: -2060.843229 EM: Round [387] log likelihood: -2060.842772 EM: Round [388] log likelihood: -2060.842319 EM: Round [389] log likelihood: -2060.841869 EM: Round [390] log likelihood: -2060.841422 EM: Round [391] log likelihood: -2060.840978 EM: Round [392] log likelihood: -2060.840538 EM: Round [393] log likelihood: -2060.840101 EM: Round [394] log likelihood: -2060.839667 EM: Round [395] log likelihood: -2060.839236 EM: Round [396] log likelihood: -2060.838809 EM: Round [397] log likelihood: -2060.838385 EM: Round [398] log likelihood: -2060.837964 EM: Round [399] log likelihood: -2060.837545 EM: Round [400] log likelihood: -2060.837131 EM: Round [401] log likelihood: -2060.836719 EM: Round [402] log likelihood: -2060.836310 EM: Round [403] log likelihood: -2060.835904 EM: Round [404] log likelihood: -2060.835501 EM: Round [405] log likelihood: -2060.835101 EM: Round [406] log likelihood: -2060.834704 EM: Round [407] log likelihood: -2060.834310 EM: Round [408] log likelihood: -2060.833919 EM: Round [409] log likelihood: -2060.833531 EM: Round [410] log likelihood: -2060.833146 EM: Round [411] log likelihood: -2060.832763 EM: Round [412] log likelihood: -2060.832383 EM: Round [413] log likelihood: -2060.832006 EM: Round [414] log likelihood: -2060.831632 EM: Round [415] log likelihood: -2060.831261 EM: Round [416] log likelihood: -2060.830892 EM: Round [417] log likelihood: -2060.830526 EM: Round [418] log likelihood: -2060.830163 EM: Round [419] log likelihood: -2060.829802 EM: Round [420] log likelihood: -2060.829444 EM: Round [421] log likelihood: -2060.829089 EM: Round [422] log likelihood: -2060.828736 EM: Round [423] log likelihood: -2060.828386 EM: Round [424] log likelihood: -2060.828038 EM: Round [425] log likelihood: -2060.827693 EM: Round [426] log likelihood: -2060.827351 EM: Round [427] log likelihood: -2060.827011 EM: Round [428] log likelihood: -2060.826674 EM: Round [429] log likelihood: -2060.826339 EM: Round [430] log likelihood: -2060.826006 EM: Round [431] log likelihood: -2060.825676 EM: Round [432] log likelihood: -2060.825348 EM: Round [433] log likelihood: -2060.825023 EM: Round [434] log likelihood: -2060.824700 EM: Round [435] log likelihood: -2060.824380 EM: Round [436] log likelihood: -2060.824061 EM: Round [437] log likelihood: -2060.823746 EM: Round [438] log likelihood: -2060.823432 EM: Round [439] log likelihood: -2060.823121 EM: Round [440] log likelihood: -2060.822812 EM: Round [441] log likelihood: -2060.822505 EM: Round [442] log likelihood: -2060.822201 EM: Round [443] log likelihood: -2060.821898 EM: Round [444] log likelihood: -2060.821598 EM: Round [445] log likelihood: -2060.821301 EM: Round [446] log likelihood: -2060.821005 EM: Round [447] log likelihood: -2060.820711 EM: Round [448] log likelihood: -2060.820420 EM: Round [449] log likelihood: -2060.820131 EM: Round [450] log likelihood: -2060.819844 EM: Round [451] log likelihood: -2060.819559 EM: Round [452] log likelihood: -2060.819276 EM: Round [453] log likelihood: -2060.818995 EM: Round [454] log likelihood: -2060.818716 EM: Round [455] log likelihood: -2060.818440 EM: Round [456] log likelihood: -2060.818165 EM: Round [457] log likelihood: -2060.817892 EM: Round [458] log likelihood: -2060.817621 EM: Round [459] log likelihood: -2060.817353 EM: Round [460] log likelihood: -2060.817086 EM: Round [461] log likelihood: -2060.816821 EM: Round [462] log likelihood: -2060.816558 EM: Round [463] log likelihood: -2060.816297 EM: Round [464] log likelihood: -2060.816038 EM: Round [465] log likelihood: -2060.815781 EM: Round [466] log likelihood: -2060.815526 EM: Round [467] log likelihood: -2060.815272 EM: Round [468] log likelihood: -2060.815021 EM: Round [469] log likelihood: -2060.814771 EM: Round [470] log likelihood: -2060.814523 EM: Round [471] log likelihood: -2060.814277 EM: Round [472] log likelihood: -2060.814032 EM: Round [473] log likelihood: -2060.813790 EM: Round [474] log likelihood: -2060.813549 EM: Round [475] log likelihood: -2060.813310 EM: Round [476] log likelihood: -2060.813073 EM: Round [477] log likelihood: -2060.812837 EM: Round [478] log likelihood: -2060.812603 EM: Round [479] log likelihood: -2060.812371 EM: Round [480] log likelihood: -2060.812141 EM: Round [481] log likelihood: -2060.811912 EM: Round [482] log likelihood: -2060.811685 EM: Round [483] log likelihood: -2060.811459 EM: Round [484] log likelihood: -2060.811235 EM: Round [485] log likelihood: -2060.811013 EM: Round [486] log likelihood: -2060.810793 EM: Round [487] log likelihood: -2060.810574 EM: Round [488] log likelihood: -2060.810356 EM: Round [489] log likelihood: -2060.810140 EM: Round [490] log likelihood: -2060.809926 EM: Round [491] log likelihood: -2060.809714 EM: Round [492] log likelihood: -2060.809502 EM: Round [493] log likelihood: -2060.809293 EM: Round [494] log likelihood: -2060.809085 EM: Round [495] log likelihood: -2060.808878 EM: Round [496] log likelihood: -2060.808673 EM: Round [497] log likelihood: -2060.808470 EM: Round [498] log likelihood: -2060.808268 EM: Round [499] log likelihood: -2060.808067 EM: Round [500] log likelihood: -2060.807868 EM: Round [501] log likelihood: -2060.807670 EM: Round [502] log likelihood: -2060.807474 EM: Round [503] log likelihood: -2060.807279 EM: Round [504] log likelihood: -2060.807086 EM: Round [505] log likelihood: -2060.806894 EM: Round [506] log likelihood: -2060.806703 EM: Round [507] log likelihood: -2060.806514 EM: Round [508] log likelihood: -2060.806326 EM: Round [509] log likelihood: -2060.806139 EM: Round [510] log likelihood: -2060.805954 EM: Round [511] log likelihood: -2060.805770 EM: Round [512] log likelihood: -2060.805588 EM: Round [513] log likelihood: -2060.805407 EM: Round [514] log likelihood: -2060.805227 EM: Round [515] log likelihood: -2060.805048 EM: Round [516] log likelihood: -2060.804871 EM: Round [517] log likelihood: -2060.804695 EM: Round [518] log likelihood: -2060.804521 EM: Round [519] log likelihood: -2060.804347 EM: Round [520] log likelihood: -2060.804175 EM: Round [521] log likelihood: -2060.804004 EM: Round [522] log likelihood: -2060.803835 EM: Round [523] log likelihood: -2060.803666 EM: Round [524] log likelihood: -2060.803499 EM: Round [525] log likelihood: -2060.803333 EM: Round [526] log likelihood: -2060.803168 EM: Round [527] log likelihood: -2060.803005 EM: Round [528] log likelihood: -2060.802842 EM: Round [529] log likelihood: -2060.802681 EM: Round [530] log likelihood: -2060.802521 EM: Round [531] log likelihood: -2060.802362 EM: Round [532] log likelihood: -2060.802204 EM: Round [533] log likelihood: -2060.802048 EM: Round [534] log likelihood: -2060.801892 EM: Round [535] log likelihood: -2060.801738 EM: Round [536] log likelihood: -2060.801585 EM: Round [537] log likelihood: -2060.801432 EM: Round [538] log likelihood: -2060.801281 EM: Round [539] log likelihood: -2060.801131 EM: Round [540] log likelihood: -2060.800983 EM: Round [541] log likelihood: -2060.800835 EM: Round [542] log likelihood: -2060.800688 EM: Round [543] log likelihood: -2060.800543 EM: Round [544] log likelihood: -2060.800398 EM: Round [545] log likelihood: -2060.800255 EM: Round [546] log likelihood: -2060.800112 EM: Round [547] log likelihood: -2060.799971 EM: Round [548] log likelihood: -2060.799830 EM: Round [549] log likelihood: -2060.799691 EM: Round [550] log likelihood: -2060.799552 EM: Round [551] log likelihood: -2060.799415 EM: Round [552] log likelihood: -2060.799279 EM: Round [553] log likelihood: -2060.799143 EM: Round [554] log likelihood: -2060.799009 EM: Round [555] log likelihood: -2060.798875 EM: Round [556] log likelihood: -2060.798743 EM: Round [557] log likelihood: -2060.798611 EM: Round [558] log likelihood: -2060.798481 EM: Round [559] log likelihood: -2060.798351 EM: Round [560] log likelihood: -2060.798222 EM: Round [561] log likelihood: -2060.798094 EM: Round [562] log likelihood: -2060.797968 EM: Round [563] log likelihood: -2060.797842 EM: Round [564] log likelihood: -2060.797717 EM: Round [565] log likelihood: -2060.797592 EM: Round [566] log likelihood: -2060.797469 EM: Round [567] log likelihood: -2060.797347 EM: Round [568] log likelihood: -2060.797225 EM: Round [569] log likelihood: -2060.797105 EM: Round [570] log likelihood: -2060.796985 EM: Round [571] log likelihood: -2060.796866 EM: Round [572] log likelihood: -2060.796748 EM: Round [573] log likelihood: -2060.796631 EM: Round [574] log likelihood: -2060.796515 EM: Round [575] log likelihood: -2060.796400 EM: Round [576] log likelihood: -2060.796285 EM: Round [577] log likelihood: -2060.796171 EM: Round [578] log likelihood: -2060.796058 EM: Round [579] log likelihood: -2060.795946 EM: Round [580] log likelihood: -2060.795835 EM: Round [581] log likelihood: -2060.795724 EM: Round [582] log likelihood: -2060.795615 EM: Round [583] log likelihood: -2060.795506 EM: Round [584] log likelihood: -2060.795397 EM: Round [585] log likelihood: -2060.795290 EM: Round [586] log likelihood: -2060.795183 EM: Round [587] log likelihood: -2060.795078 EM: Round [588] log likelihood: -2060.794973 EM: Round [589] log likelihood: -2060.794868 EM: Round [590] log likelihood: -2060.794765 EM: Round [591] log likelihood: -2060.794662 EM: Round [592] log likelihood: -2060.794560 EM: Round [593] log likelihood: -2060.794459 EM: Round [594] log likelihood: -2060.794358 EM: Round [595] log likelihood: -2060.794258 EM: Stopping iterations at round 595 due to insufficient improvement in likelihood. -total frags in /tmp/nxf.Wyv1hwOhSd/1173_G2E_T1_RNA_SLD_01_A23T55JLT4_2_1.fastp.fastq.gz: 281966738 Warning - not locating file: /tmp/nxf.Wyv1hwOhSd/1173_G2E_T1_RNA_SLD_01_A23T55JLT4_2.gmap_trinity_GG.fusions.gff3.bed WARNING, no entry stored in dbm for [ENSG00000226049.3] WARNING, no entry stored in dbm for [ENSG00000260404.3] WARNING, no entry stored in dbm for [ENSG00000273252.1] ls: cannot access 'IGV_inputs': No such file or directory