File Info

Filename
fi_workdir/Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0e/991da98e26e8e618860a61f3e364ab/fi_workdir/Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 07:51:54
                             Started mapping on |	Jun 08 07:58:19
                                    Finished on |	Jun 08 08:02:54
       Mapping speed, Million of reads per hour |	435.32

                          Number of input reads |	33253931
                      Average input read length |	214
                                    UNIQUE READS:
                   Uniquely mapped reads number |	31539745
                        Uniquely mapped reads % |	94.85%
                          Average mapped length |	213.84
                       Number of splices: Total |	23150283
            Number of splices: Annotated (sjdb) |	22811072
                       Number of splices: GT/AG |	22914953
                       Number of splices: GC/AG |	136105
                       Number of splices: AT/AC |	14016
               Number of splices: Non-canonical |	85209
                      Mismatch rate per base, % |	0.21%
                         Deletion rate per base |	0.02%
                        Deletion average length |	1.80
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.58
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	1207273
             % of reads mapped to multiple loci |	3.63%
        Number of reads mapped to too many loci |	83400
             % of reads mapped to too many loci |	0.25%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	0
       % of reads unmapped: too many mismatches |	0.00%
            Number of reads unmapped: too short |	363996
                 % of reads unmapped: too short |	1.09%
                Number of reads unmapped: other |	59517
                     % of reads unmapped: other |	0.18%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%