Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/98/8889052486e3553eac57b28f32c760/fi_workdir/1173_FWA_T1_RNA_SLD_01_A23T55JLT4_1.gtf
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a0/42129814aebaac28303dbf04af268c/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a0/42129814aebaac28303dbf04af268c/.command.run
==> STAGING COMPLETE (3 inputs)
Using standard /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/agat_config.yaml file
------------------------------------------------------------------------------
| Another GFF Analysis Toolkit (AGAT) - Version: v1.2.0 |
| https://github.com/NBISweden/AGAT |
| National Bioinformatics Infrastructure Sweden (NBIS) - www.nbis.se |
------------------------------------------------------------------------------
------ Start parsing ------
-------------------------- parse options and metadata --------------------------
=> Accessing the feature_levels YAML file
Using standard /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/feature_levels.yaml file
=> Attribute used to group features when no Parent/ID relationship exists (i.e common tag):
* locus_tag
* gene_id
=> merge_loci option deactivated
=> Machine information:
This script is being run by perl v5.32.1
Bioperl location being used: /usr/local/lib/perl5/site_perl/Bio/
Operating system being used: linux
=> Accessing Ontology
No ontology accessible from the gff file header!
We use the SOFA ontology distributed with AGAT:
/usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/so.obo
Read ontology /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/so.obo:
4 root terms, and 2596 total terms, and 1516 leaf terms
Filtering ontology:
We found 1861 terms that are sequence_feature or is_a child of it.
--------------------------------- parsing file ---------------------------------
=> Number of line in file: 8998
=> Number of comment lines: 0
=> Fasta included: No
=> Number of features lines: 8998
=> Number of feature type (3rd column): 2
* Level1: 0 =>
* level2: 0 =>
* level3: 2 => CDS exon
* unknown: 0 =>
=>Check because only level3 features:
* Number of feature with Parent attribute:0
* Number of feature with a common attribute:8998
=> Some common attributes and some Parent attributes missing.
/!\ For features where both are missing A single Level2 features (e.g. mRNA) and a single level1 (e.g. gene) will be created by AGAT, and all level3 feautres (e,g, CDS,exon) will be attached to them. This is probably not what you want...
see B. 2.2 and 3. at https://agat.readthedocs.io/en/latest/agat_how_does_it_work.html
/!\ For features where the common attribute or the parent attribute is missing, it would be fine as long as you do not expect isoforms in your annotation (Eukaryote). see B. 4. at https://agat.readthedocs.io/en/latest/agat_how_does_it_work.html
!! You might try to fix the issue by choosing a common tag attribute to use in order to group the features correctly (parameter --ct in agat_convert_sp_gxf2gxf.pl).
=> Version of the Bioperl GFF parser selected by AGAT: 2
------ End parsing (done in 2 second) ------
------ Start checks ------
---------------------------- Check1: feature types -----------------------------
----------------------------------- ontology -----------------------------------
All feature types in agreement with the Ontology.
------------------------------------- agat -------------------------------------
AGAT can deal with all the encountered feature types (3rd column)
------------------------------ done in 0 seconds -------------------------------
------------------------------ Check2: duplicates ------------------------------
None found
------------------------------ done in 0 seconds -------------------------------
-------------------------- Check3: sequential bucket ---------------------------
Nothing to check as sequential bucket!
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check4: l2 linked to l3 ----------------------------
L1 and L2 created:
AC015911.9--SLFN12L HAVANA gene 4692 11059 . + . FI_gene_label "SLFN12L^ENSG00000205045.11" ; ID "AC015911.9--SLFN12L^SLFN12L^ENSG00000205045.11" ; exon_id "ENSE00003850559.1" ; exon_number 2 ; gene_id "AC015911.9--SLFN12L^SLFN12L^ENSG00000205045.11" ; gene_name SLFN12L ; gene_type protein_coding ; havana_gene "OTTHUMG00000193506.1" ; havana_transcript "OTTHUMT00000395748.3" ; hgnc_id "HGNC:33920" ; level 2 ; orig_coord_info "chr17,35479117,35480155,-" ; protein_id "ENSP00000437635.2" ; tag not_organism_supported basic appris_alternative_2 ; transcript_id "AC015911.9--SLFN12L^ENST00000260908.12" ; transcript_name "SLFN12L-201" ; transcript_support_level 5 ; transcript_type protein_coding
AC015911.9--SLFN12L HAVANA mRNA 4692 11059 . + . FI_gene_label "SLFN12L^ENSG00000205045.11" ; ID "AC015911.9--SLFN12L^ENST00000260908.12" ; Parent "AC015911.9--SLFN12L^SLFN12L^ENSG00000205045.11" ; exon_id "ENSE00003850559.1" ; exon_number 2 ; gene_id "AC015911.9--SLFN12L^SLFN12L^ENSG00000205045.11" ; gene_name SLFN12L ; gene_type protein_coding ; havana_gene "OTTHUMG00000193506.1" ; havana_transcript "OTTHUMT00000395748.3" ; hgnc_id "HGNC:33920" ; level 2 ; orig_coord_info "chr17,35479117,35480155,-" ; protein_id "ENSP00000437635.2" ; tag not_organism_supported basic appris_alternative_2 ; transcript_id "AC015911.9--SLFN12L^ENST00000260908.12" ; transcript_name "SLFN12L-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
ACADVL--MT-RNR2 HAVANA gene 2695 8116 . + . FI_gene_label "ACADVL^ENSG00000072778.20" ; ID "ACADVL--MT-RNR2^ACADVL^ENSG00000072778.20" ; exon_id "ENSE00002717210.1" ; exon_number 1 ; gene_id "ACADVL--MT-RNR2^ACADVL^ENSG00000072778.20" ; gene_name ACADVL ; gene_type protein_coding ; havana_gene "OTTHUMG00000102157.25" ; havana_transcript "OTTHUMT00000444677.2" ; hgnc_id "HGNC:92" ; level 2 ; orig_coord_info "chr17,7219985,7220101,+" ; protein_id "ENSP00000325395.5" ; transcript_id "ACADVL--MT-RNR2^ENST00000322910.9" ; transcript_name "ACADVL-201" ; transcript_support_level 2 ; transcript_type nonsense_mediated_decay
ACADVL--MT-RNR2 HAVANA mRNA 2695 8116 . + . FI_gene_label "ACADVL^ENSG00000072778.20" ; ID "ACADVL--MT-RNR2^ENST00000322910.9" ; Parent "ACADVL--MT-RNR2^ACADVL^ENSG00000072778.20" ; exon_id "ENSE00002717210.1" ; exon_number 1 ; gene_id "ACADVL--MT-RNR2^ACADVL^ENSG00000072778.20" ; gene_name ACADVL ; gene_type protein_coding ; havana_gene "OTTHUMG00000102157.25" ; havana_transcript "OTTHUMT00000444677.2" ; hgnc_id "HGNC:92" ; level 2 ; orig_coord_info "chr17,7219985,7220101,+" ; protein_id "ENSP00000325395.5" ; transcript_id "ACADVL--MT-RNR2^ENST00000322910.9" ; transcript_name "ACADVL-201" ; transcript_support_level 2 ; transcript_type nonsense_mediated_decay
L1 and L2 created:
AMER1--ARHGEF9 HAVANA gene 17781 54817 . + . FI_gene_label "ARHGEF9^ENSG00000131089.17" ; ID "AMER1--ARHGEF9^ARHGEF9^ENSG00000131089.17" ; ccdsid "CCDS35315.1" ; exon_id "ENSE00001865551.1" ; exon_number 1 ; gene_id "AMER1--ARHGEF9^ARHGEF9^ENSG00000131089.17" ; gene_name ARHGEF9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000021700.17" ; havana_transcript "OTTHUMT00000056937.1" ; hgnc_id "HGNC:14561" ; level 2 ; orig_coord_info "chrX,63754304,63754312,-" ; protein_id "ENSP00000253401.6" ; tag basic appris_principal_4 CCDS ; transcript_id "AMER1--ARHGEF9^ENST00000253401.10" ; transcript_name "ARHGEF9-201" ; transcript_support_level 1 ; transcript_type protein_coding
AMER1--ARHGEF9 HAVANA mRNA 17781 54817 . + . FI_gene_label "ARHGEF9^ENSG00000131089.17" ; ID "AMER1--ARHGEF9^ENST00000253401.10" ; Parent "AMER1--ARHGEF9^ARHGEF9^ENSG00000131089.17" ; ccdsid "CCDS35315.1" ; exon_id "ENSE00001865551.1" ; exon_number 1 ; gene_id "AMER1--ARHGEF9^ARHGEF9^ENSG00000131089.17" ; gene_name ARHGEF9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000021700.17" ; havana_transcript "OTTHUMT00000056937.1" ; hgnc_id "HGNC:14561" ; level 2 ; orig_coord_info "chrX,63754304,63754312,-" ; protein_id "ENSP00000253401.6" ; tag basic appris_principal_4 CCDS ; transcript_id "AMER1--ARHGEF9^ENST00000253401.10" ; transcript_name "ARHGEF9-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AMER1--ARHGEF9 HAVANA gene 1001 10407 . + . FI_gene_label "AMER1^ENSG00000184675.11" ; ID "AMER1--ARHGEF9^AMER1^ENSG00000184675.11" ; ccdsid "CCDS14377.2" ; exon_id "ENSE00001298168.5" ; exon_number 2 ; gene_id "AMER1--ARHGEF9^AMER1^ENSG00000184675.11" ; gene_name AMER1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000021703.3" ; havana_transcript "OTTHUMT00000500810.1" ; hgnc_id "HGNC:26837" ; level 2 ; orig_coord_info "chrX,64189882,64193286,-" ; protein_id "ENSP00000364003.4" ; tag CAGE_supported_TSS basic MANE_Select appris_principal_1 CCDS ; transcript_id "AMER1--ARHGEF9^ENST00000374869.8" ; transcript_name "AMER1-201" ; transcript_support_level 5 ; transcript_type protein_coding
AMER1--ARHGEF9 HAVANA mRNA 1001 10407 . + . FI_gene_label "AMER1^ENSG00000184675.11" ; ID "AMER1--ARHGEF9^ENST00000374869.8" ; Parent "AMER1--ARHGEF9^AMER1^ENSG00000184675.11" ; ccdsid "CCDS14377.2" ; exon_id "ENSE00001298168.5" ; exon_number 2 ; gene_id "AMER1--ARHGEF9^AMER1^ENSG00000184675.11" ; gene_name AMER1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000021703.3" ; havana_transcript "OTTHUMT00000500810.1" ; hgnc_id "HGNC:26837" ; level 2 ; orig_coord_info "chrX,64189882,64193286,-" ; protein_id "ENSP00000364003.4" ; tag CAGE_supported_TSS basic MANE_Select appris_principal_1 CCDS ; transcript_id "AMER1--ARHGEF9^ENST00000374869.8" ; transcript_name "AMER1-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
BRD2--ITPR3 HAVANA gene 16864 55838 . + . FI_gene_label "ITPR3^ENSG00000096433.11" ; ID "BRD2--ITPR3^ITPR3^ENSG00000096433.11" ; ccdsid "CCDS4783.1" ; exon_id "ENSE00001463444.5" ; exon_number 2 ; gene_id "BRD2--ITPR3^ITPR3^ENSG00000096433.11" ; gene_name ITPR3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014532.4" ; havana_transcript "OTTHUMT00000040204.2" ; hgnc_id "HGNC:6182" ; level 2 ; orig_coord_info "chr6,33621603,33621691,+" ; protein_id "ENSP00000363435.4" ; tag basic appris_principal_1 CCDS ; transcript_id "BRD2--ITPR3^ENST00000374316.9" ; transcript_name "ITPR3-201" ; transcript_support_level 5 ; transcript_type protein_coding
BRD2--ITPR3 HAVANA mRNA 16864 55838 . + . FI_gene_label "ITPR3^ENSG00000096433.11" ; ID "BRD2--ITPR3^ENST00000374316.9" ; Parent "BRD2--ITPR3^ITPR3^ENSG00000096433.11" ; ccdsid "CCDS4783.1" ; exon_id "ENSE00001463444.5" ; exon_number 2 ; gene_id "BRD2--ITPR3^ITPR3^ENSG00000096433.11" ; gene_name ITPR3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014532.4" ; havana_transcript "OTTHUMT00000040204.2" ; hgnc_id "HGNC:6182" ; level 2 ; orig_coord_info "chr6,33621603,33621691,+" ; protein_id "ENSP00000363435.4" ; tag basic appris_principal_1 CCDS ; transcript_id "BRD2--ITPR3^ENST00000374316.9" ; transcript_name "ITPR3-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
BRD2--ITPR3 HAVANA gene 1001 13859 . + . FI_gene_label "BRD2^ENSG00000204256.14" ; ID "BRD2--ITPR3^BRD2^ENSG00000204256.14" ; ccdsid "CCDS4762.1" ; exon_id "ENSE00003691002.1" ; exon_number 2 ; gene_id "BRD2--ITPR3^BRD2^ENSG00000204256.14" ; gene_name BRD2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000031241.8" ; havana_transcript "OTTHUMT00000076503.3" ; hgnc_id "HGNC:1103" ; level 2 ; orig_coord_info "chr6,32972899,32972927,+" ; protein_id "ENSP00000363958.4" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "BRD2--ITPR3^ENST00000374825.9" ; transcript_name "BRD2-201" ; transcript_support_level 1 ; transcript_type protein_coding
BRD2--ITPR3 HAVANA mRNA 1001 13859 . + . FI_gene_label "BRD2^ENSG00000204256.14" ; ID "BRD2--ITPR3^ENST00000374825.9" ; Parent "BRD2--ITPR3^BRD2^ENSG00000204256.14" ; ccdsid "CCDS4762.1" ; exon_id "ENSE00003691002.1" ; exon_number 2 ; gene_id "BRD2--ITPR3^BRD2^ENSG00000204256.14" ; gene_name BRD2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000031241.8" ; havana_transcript "OTTHUMT00000076503.3" ; hgnc_id "HGNC:1103" ; level 2 ; orig_coord_info "chr6,32972899,32972927,+" ; protein_id "ENSP00000363958.4" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "BRD2--ITPR3^ENST00000374825.9" ; transcript_name "BRD2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CAPZB--EMC1 HAVANA gene 1001 28676 . + . FI_gene_label "CAPZB^ENSG00000077549.19" ; ID "CAPZB--EMC1^CAPZB^ENSG00000077549.19" ; ccdsid "CCDS41277.1" ; exon_id "ENSE00001546290.4" ; exon_number 1 ; gene_id "CAPZB--EMC1^CAPZB^ENSG00000077549.19" ; gene_name CAPZB ; gene_type protein_coding ; havana_gene "OTTHUMG00000002556.12" ; havana_transcript "OTTHUMT00000476514.3" ; hgnc_id "HGNC:1491" ; level 2 ; orig_coord_info "chr1,19485436,19485438,-" ; protein_id "ENSP00000264202.7" ; tag basic MANE_Select appris_principal_3 CCDS ; transcript_id "CAPZB--EMC1^ENST00000264202.8" ; transcript_name "CAPZB-201" ; transcript_support_level 1 ; transcript_type protein_coding
CAPZB--EMC1 HAVANA mRNA 1001 28676 . + . FI_gene_label "CAPZB^ENSG00000077549.19" ; ID "CAPZB--EMC1^ENST00000264202.8" ; Parent "CAPZB--EMC1^CAPZB^ENSG00000077549.19" ; ccdsid "CCDS41277.1" ; exon_id "ENSE00001546290.4" ; exon_number 1 ; gene_id "CAPZB--EMC1^CAPZB^ENSG00000077549.19" ; gene_name CAPZB ; gene_type protein_coding ; havana_gene "OTTHUMG00000002556.12" ; havana_transcript "OTTHUMT00000476514.3" ; hgnc_id "HGNC:1491" ; level 2 ; orig_coord_info "chr1,19485436,19485438,-" ; protein_id "ENSP00000264202.7" ; tag basic MANE_Select appris_principal_3 CCDS ; transcript_id "CAPZB--EMC1^ENST00000264202.8" ; transcript_name "CAPZB-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CAPZB--EMC1 HAVANA gene 31695 55375 . + . FI_gene_label "EMC1^ENSG00000127463.15" ; ID "CAPZB--EMC1^EMC1^ENSG00000127463.15" ; ccdsid "CCDS59191.1" ; exon_id "ENSE00001952537.1" ; exon_number 1 ; gene_id "CAPZB--EMC1^EMC1^ENSG00000127463.15" ; gene_name EMC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000002497.6" ; havana_transcript "OTTHUMT00000355698.1" ; hgnc_id "HGNC:28957" ; level 2 ; orig_coord_info "chr1,19251415,19251509,-" ; protein_id "ENSP00000364345.3" ; tag basic appris_alternative_1 CCDS ; transcript_id "CAPZB--EMC1^ENST00000375199.7" ; transcript_name "EMC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
CAPZB--EMC1 HAVANA mRNA 31695 55375 . + . FI_gene_label "EMC1^ENSG00000127463.15" ; ID "CAPZB--EMC1^ENST00000375199.7" ; Parent "CAPZB--EMC1^EMC1^ENSG00000127463.15" ; ccdsid "CCDS59191.1" ; exon_id "ENSE00001952537.1" ; exon_number 1 ; gene_id "CAPZB--EMC1^EMC1^ENSG00000127463.15" ; gene_name EMC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000002497.6" ; havana_transcript "OTTHUMT00000355698.1" ; hgnc_id "HGNC:28957" ; level 2 ; orig_coord_info "chr1,19251415,19251509,-" ; protein_id "ENSP00000364345.3" ; tag basic appris_alternative_1 CCDS ; transcript_id "CAPZB--EMC1^ENST00000375199.7" ; transcript_name "EMC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
COX6CP1--COX6C HAVANA gene 4239 10289 . + . FI_gene_label "COX6C^ENSG00000164919.11" ; ID "COX6CP1--COX6C^COX6C^ENSG00000164919.11" ; ccdsid "CCDS6284.1" ; exon_id "ENSE00002129072.1" ; exon_number 2 ; gene_id "COX6CP1--COX6C^COX6C^ENSG00000164919.11" ; gene_name COX6C ; gene_type protein_coding ; havana_gene "OTTHUMG00000164703.6" ; havana_transcript "OTTHUMT00000379835.1" ; hgnc_id "HGNC:2285" ; level 2 ; orig_coord_info "chr8,99891908,99892021,-" ; protein_id "ENSP00000297564.2" ; tag alternative_5_UTR basic appris_principal_1 CCDS ; transcript_id "COX6CP1--COX6C^ENST00000297564.6" ; transcript_name "COX6C-201" ; transcript_support_level 2 ; transcript_type protein_coding
COX6CP1--COX6C HAVANA mRNA 4239 10289 . + . FI_gene_label "COX6C^ENSG00000164919.11" ; ID "COX6CP1--COX6C^ENST00000297564.6" ; Parent "COX6CP1--COX6C^COX6C^ENSG00000164919.11" ; ccdsid "CCDS6284.1" ; exon_id "ENSE00002129072.1" ; exon_number 2 ; gene_id "COX6CP1--COX6C^COX6C^ENSG00000164919.11" ; gene_name COX6C ; gene_type protein_coding ; havana_gene "OTTHUMG00000164703.6" ; havana_transcript "OTTHUMT00000379835.1" ; hgnc_id "HGNC:2285" ; level 2 ; orig_coord_info "chr8,99891908,99892021,-" ; protein_id "ENSP00000297564.2" ; tag alternative_5_UTR basic appris_principal_1 CCDS ; transcript_id "COX6CP1--COX6C^ENST00000297564.6" ; transcript_name "COX6C-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
CRLF3--ADAP2 HAVANA gene 1001 14462 . + . FI_gene_label "CRLF3^ENSG00000176390.12" ; ID "CRLF3--ADAP2^CRLF3^ENSG00000176390.12" ; ccdsid "CCDS32607.1" ; exon_id "ENSE00001309362.7" ; exon_number 1 ; gene_id "CRLF3--ADAP2^CRLF3^ENSG00000176390.12" ; gene_name CRLF3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179005.2" ; havana_transcript "OTTHUMT00000444354.2" ; hgnc_id "HGNC:17177" ; level 2 ; orig_coord_info "chr17,30824523,30824651,-" ; protein_id "ENSP00000318804.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CRLF3--ADAP2^ENST00000324238.7" ; transcript_name "CRLF3-201" ; transcript_support_level 1 ; transcript_type protein_coding
CRLF3--ADAP2 HAVANA mRNA 1001 14462 . + . FI_gene_label "CRLF3^ENSG00000176390.12" ; ID "CRLF3--ADAP2^ENST00000324238.7" ; Parent "CRLF3--ADAP2^CRLF3^ENSG00000176390.12" ; ccdsid "CCDS32607.1" ; exon_id "ENSE00001309362.7" ; exon_number 1 ; gene_id "CRLF3--ADAP2^CRLF3^ENSG00000176390.12" ; gene_name CRLF3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179005.2" ; havana_transcript "OTTHUMT00000444354.2" ; hgnc_id "HGNC:17177" ; level 2 ; orig_coord_info "chr17,30824523,30824651,-" ; protein_id "ENSP00000318804.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CRLF3--ADAP2^ENST00000324238.7" ; transcript_name "CRLF3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CRLF3--ADAP2 HAVANA gene 23082 35985 . + . FI_gene_label "ADAP2^ENSG00000184060.11" ; ID "CRLF3--ADAP2^ADAP2^ENSG00000184060.11" ; ccdsid "CCDS11261.1" ; exon_id "ENSE00003843162.1" ; exon_number 1 ; gene_id "CRLF3--ADAP2^ADAP2^ENSG00000184060.11" ; gene_name ADAP2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132868.5" ; havana_transcript "OTTHUMT00000256346.2" ; hgnc_id "HGNC:16487" ; level 2 ; orig_coord_info "chr17,30922015,30922108,+" ; protein_id "ENSP00000329468.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CRLF3--ADAP2^ENST00000330889.8" ; transcript_name "ADAP2-201" ; transcript_support_level 1 ; transcript_type protein_coding
CRLF3--ADAP2 HAVANA mRNA 23082 35985 . + . FI_gene_label "ADAP2^ENSG00000184060.11" ; ID "CRLF3--ADAP2^ENST00000330889.8" ; Parent "CRLF3--ADAP2^ADAP2^ENSG00000184060.11" ; ccdsid "CCDS11261.1" ; exon_id "ENSE00003843162.1" ; exon_number 1 ; gene_id "CRLF3--ADAP2^ADAP2^ENSG00000184060.11" ; gene_name ADAP2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132868.5" ; havana_transcript "OTTHUMT00000256346.2" ; hgnc_id "HGNC:16487" ; level 2 ; orig_coord_info "chr17,30922015,30922108,+" ; protein_id "ENSP00000329468.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CRLF3--ADAP2^ENST00000330889.8" ; transcript_name "ADAP2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
DNM1L--AC024405.1 HAVANA gene 1104 23928 . + . FI_gene_label "DNM1L^ENSG00000087470.19" ; ID "DNM1L--AC024405.1^DNM1L^ENSG00000087470.19" ; ccdsid "CCDS8728.1" ; exon_id "ENSE00002365308.1" ; exon_number 1 ; gene_id "DNM1L--AC024405.1^DNM1L^ENSG00000087470.19" ; gene_name DNM1L ; gene_type protein_coding ; havana_gene "OTTHUMG00000169451.3" ; havana_transcript "OTTHUMT00000404127.1" ; hgnc_id "HGNC:2973" ; level 2 ; orig_coord_info "chr12,32679364,32679465,+" ; protein_id "ENSP00000266481.6" ; tag basic appris_alternative_1 CCDS ; transcript_id "DNM1L--AC024405.1^ENST00000266481.10" ; transcript_name "DNM1L-201" ; transcript_support_level 1 ; transcript_type protein_coding
DNM1L--AC024405.1 HAVANA mRNA 1104 23928 . + . FI_gene_label "DNM1L^ENSG00000087470.19" ; ID "DNM1L--AC024405.1^ENST00000266481.10" ; Parent "DNM1L--AC024405.1^DNM1L^ENSG00000087470.19" ; ccdsid "CCDS8728.1" ; exon_id "ENSE00002365308.1" ; exon_number 1 ; gene_id "DNM1L--AC024405.1^DNM1L^ENSG00000087470.19" ; gene_name DNM1L ; gene_type protein_coding ; havana_gene "OTTHUMG00000169451.3" ; havana_transcript "OTTHUMT00000404127.1" ; hgnc_id "HGNC:2973" ; level 2 ; orig_coord_info "chr12,32679364,32679465,+" ; protein_id "ENSP00000266481.6" ; tag basic appris_alternative_1 CCDS ; transcript_id "DNM1L--AC024405.1^ENST00000266481.10" ; transcript_name "DNM1L-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
DNM1L--OR4C50P HAVANA gene 1104 23928 . + . FI_gene_label "DNM1L^ENSG00000087470.19" ; ID "DNM1L--OR4C50P^DNM1L^ENSG00000087470.19" ; ccdsid "CCDS8728.1" ; exon_id "ENSE00002365308.1" ; exon_number 1 ; gene_id "DNM1L--OR4C50P^DNM1L^ENSG00000087470.19" ; gene_name DNM1L ; gene_type protein_coding ; havana_gene "OTTHUMG00000169451.3" ; havana_transcript "OTTHUMT00000404127.1" ; hgnc_id "HGNC:2973" ; level 2 ; orig_coord_info "chr12,32679364,32679465,+" ; protein_id "ENSP00000266481.6" ; tag basic appris_alternative_1 CCDS ; transcript_id "DNM1L--OR4C50P^ENST00000266481.10" ; transcript_name "DNM1L-201" ; transcript_support_level 1 ; transcript_type protein_coding
DNM1L--OR4C50P HAVANA mRNA 1104 23928 . + . FI_gene_label "DNM1L^ENSG00000087470.19" ; ID "DNM1L--OR4C50P^ENST00000266481.10" ; Parent "DNM1L--OR4C50P^DNM1L^ENSG00000087470.19" ; ccdsid "CCDS8728.1" ; exon_id "ENSE00002365308.1" ; exon_number 1 ; gene_id "DNM1L--OR4C50P^DNM1L^ENSG00000087470.19" ; gene_name DNM1L ; gene_type protein_coding ; havana_gene "OTTHUMG00000169451.3" ; havana_transcript "OTTHUMT00000404127.1" ; hgnc_id "HGNC:2973" ; level 2 ; orig_coord_info "chr12,32679364,32679465,+" ; protein_id "ENSP00000266481.6" ; tag basic appris_alternative_1 CCDS ; transcript_id "DNM1L--OR4C50P^ENST00000266481.10" ; transcript_name "DNM1L-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
GLG1--ZFHX3 HAVANA gene 1031 37403 . + . FI_gene_label "GLG1^ENSG00000090863.12" ; ID "GLG1--ZFHX3^GLG1^ENSG00000090863.12" ; ccdsid "CCDS32485.1" ; exon_id "ENSE00002603544.1" ; exon_number 1 ; gene_id "GLG1--ZFHX3^GLG1^ENSG00000090863.12" ; gene_name GLG1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177174.6" ; havana_transcript "OTTHUMT00000435732.3" ; hgnc_id "HGNC:4316" ; level 2 ; orig_coord_info "chr16,74606657,74607094,-" ; protein_id "ENSP00000205061.5" ; tag 3_standard_supported_extension basic appris_alternative_2 CCDS ; transcript_id "GLG1--ZFHX3^ENST00000205061.9" ; transcript_name "GLG1-201" ; transcript_support_level 1 ; transcript_type protein_coding
GLG1--ZFHX3 HAVANA mRNA 1031 37403 . + . FI_gene_label "GLG1^ENSG00000090863.12" ; ID "GLG1--ZFHX3^ENST00000205061.9" ; Parent "GLG1--ZFHX3^GLG1^ENSG00000090863.12" ; ccdsid "CCDS32485.1" ; exon_id "ENSE00002603544.1" ; exon_number 1 ; gene_id "GLG1--ZFHX3^GLG1^ENSG00000090863.12" ; gene_name GLG1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177174.6" ; havana_transcript "OTTHUMT00000435732.3" ; hgnc_id "HGNC:4316" ; level 2 ; orig_coord_info "chr16,74606657,74607094,-" ; protein_id "ENSP00000205061.5" ; tag 3_standard_supported_extension basic appris_alternative_2 CCDS ; transcript_id "GLG1--ZFHX3^ENST00000205061.9" ; transcript_name "GLG1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
GLG1--ZFHX3 HAVANA gene 61052 85265 . + . FI_gene_label "ZFHX3^ENSG00000140836.17" ; ID "GLG1--ZFHX3^ZFHX3^ENSG00000140836.17" ; ccdsid "CCDS10908.1" ; exon_id "ENSE00001171638.5" ; exon_number 2 ; gene_id "GLG1--ZFHX3^ZFHX3^ENSG00000140836.17" ; gene_name ZFHX3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000137599.7" ; havana_transcript "OTTHUMT00000269008.2" ; hgnc_id "HGNC:777" ; level 2 ; orig_coord_info "chr16,72957427,72960145,-" ; protein_id "ENSP00000268489.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "GLG1--ZFHX3^ENST00000268489.10" ; transcript_name "ZFHX3-201" ; transcript_support_level 1 ; transcript_type protein_coding
GLG1--ZFHX3 HAVANA mRNA 61052 85265 . + . FI_gene_label "ZFHX3^ENSG00000140836.17" ; ID "GLG1--ZFHX3^ENST00000268489.10" ; Parent "GLG1--ZFHX3^ZFHX3^ENSG00000140836.17" ; ccdsid "CCDS10908.1" ; exon_id "ENSE00001171638.5" ; exon_number 2 ; gene_id "GLG1--ZFHX3^ZFHX3^ENSG00000140836.17" ; gene_name ZFHX3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000137599.7" ; havana_transcript "OTTHUMT00000269008.2" ; hgnc_id "HGNC:777" ; level 2 ; orig_coord_info "chr16,72957427,72960145,-" ; protein_id "ENSP00000268489.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "GLG1--ZFHX3^ENST00000268489.10" ; transcript_name "ZFHX3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
GUCY1B2--NKAIN2 HAVANA gene 24657 32303 . + . FI_gene_label "NKAIN2^ENSG00000188580.15" ; ID "GUCY1B2--NKAIN2^NKAIN2^ENSG00000188580.15" ; exon_id "ENSE00003552753.1" ; exon_number 1 ; gene_id "GUCY1B2--NKAIN2^NKAIN2^ENSG00000188580.15" ; gene_name NKAIN2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000015500.3" ; havana_transcript "OTTHUMT00000042056.1" ; hgnc_id "HGNC:16443" ; level 2 ; orig_coord_info "chr6,123804201,123804254,+" ; protein_id "ENSP00000357401.1" ; tag basic ; transcript_id "GUCY1B2--NKAIN2^ENST00000368416.5" ; transcript_name "NKAIN2-201" ; transcript_support_level 1 ; transcript_type protein_coding
GUCY1B2--NKAIN2 HAVANA mRNA 24657 32303 . + . FI_gene_label "NKAIN2^ENSG00000188580.15" ; ID "GUCY1B2--NKAIN2^ENST00000368416.5" ; Parent "GUCY1B2--NKAIN2^NKAIN2^ENSG00000188580.15" ; exon_id "ENSE00003552753.1" ; exon_number 1 ; gene_id "GUCY1B2--NKAIN2^NKAIN2^ENSG00000188580.15" ; gene_name NKAIN2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000015500.3" ; havana_transcript "OTTHUMT00000042056.1" ; hgnc_id "HGNC:16443" ; level 2 ; orig_coord_info "chr6,123804201,123804254,+" ; protein_id "ENSP00000357401.1" ; tag basic ; transcript_id "GUCY1B2--NKAIN2^ENST00000368416.5" ; transcript_name "NKAIN2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
KCNQ1--AC021749.1 HAVANA gene 1325 22441 . + . FI_gene_label "KCNQ1^ENSG00000053918.18" ; ID "KCNQ1--AC021749.1^KCNQ1^ENSG00000053918.18" ; ccdsid "CCDS7736.1" ; exon_id "ENSE00001339597.3" ; exon_number 1 ; gene_id "KCNQ1--AC021749.1^KCNQ1^ENSG00000053918.18" ; gene_name KCNQ1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000009900.11" ; havana_transcript "OTTHUMT00000027382.5" ; hgnc_id "HGNC:6294" ; level 2 ; orig_coord_info "chr11,2445099,2445484,+" ; protein_id "ENSP00000155840.2" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "KCNQ1--AC021749.1^ENST00000155840.12" ; transcript_name "KCNQ1-201" ; transcript_support_level 1 ; transcript_type protein_coding
KCNQ1--AC021749.1 HAVANA mRNA 1325 22441 . + . FI_gene_label "KCNQ1^ENSG00000053918.18" ; ID "KCNQ1--AC021749.1^ENST00000155840.12" ; Parent "KCNQ1--AC021749.1^KCNQ1^ENSG00000053918.18" ; ccdsid "CCDS7736.1" ; exon_id "ENSE00001339597.3" ; exon_number 1 ; gene_id "KCNQ1--AC021749.1^KCNQ1^ENSG00000053918.18" ; gene_name KCNQ1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000009900.11" ; havana_transcript "OTTHUMT00000027382.5" ; hgnc_id "HGNC:6294" ; level 2 ; orig_coord_info "chr11,2445099,2445484,+" ; protein_id "ENSP00000155840.2" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "KCNQ1--AC021749.1^ENST00000155840.12" ; transcript_name "KCNQ1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
KCNQ1--RNU6-99P HAVANA gene 1325 22441 . + . FI_gene_label "KCNQ1^ENSG00000053918.18" ; ID "KCNQ1--RNU6-99P^KCNQ1^ENSG00000053918.18" ; ccdsid "CCDS7736.1" ; exon_id "ENSE00001339597.3" ; exon_number 1 ; gene_id "KCNQ1--RNU6-99P^KCNQ1^ENSG00000053918.18" ; gene_name KCNQ1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000009900.11" ; havana_transcript "OTTHUMT00000027382.5" ; hgnc_id "HGNC:6294" ; level 2 ; orig_coord_info "chr11,2445099,2445484,+" ; protein_id "ENSP00000155840.2" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "KCNQ1--RNU6-99P^ENST00000155840.12" ; transcript_name "KCNQ1-201" ; transcript_support_level 1 ; transcript_type protein_coding
KCNQ1--RNU6-99P HAVANA mRNA 1325 22441 . + . FI_gene_label "KCNQ1^ENSG00000053918.18" ; ID "KCNQ1--RNU6-99P^ENST00000155840.12" ; Parent "KCNQ1--RNU6-99P^KCNQ1^ENSG00000053918.18" ; ccdsid "CCDS7736.1" ; exon_id "ENSE00001339597.3" ; exon_number 1 ; gene_id "KCNQ1--RNU6-99P^KCNQ1^ENSG00000053918.18" ; gene_name KCNQ1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000009900.11" ; havana_transcript "OTTHUMT00000027382.5" ; hgnc_id "HGNC:6294" ; level 2 ; orig_coord_info "chr11,2445099,2445484,+" ; protein_id "ENSP00000155840.2" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "KCNQ1--RNU6-99P^ENST00000155840.12" ; transcript_name "KCNQ1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
LRP5--AP003071.2 HAVANA gene 1001 30833 . + . FI_gene_label "LRP5^ENSG00000162337.12" ; ID "LRP5--AP003071.2^LRP5^ENSG00000162337.12" ; ccdsid "CCDS8181.1" ; exon_id "ENSE00001413096.5" ; exon_number 1 ; gene_id "LRP5--AP003071.2^LRP5^ENSG00000162337.12" ; gene_name LRP5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167570.2" ; havana_transcript "OTTHUMT00000395088.2" ; hgnc_id "HGNC:6697" ; level 2 ; orig_coord_info "chr11,68312715,68312805,+" ; protein_id "ENSP00000294304.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "LRP5--AP003071.2^ENST00000294304.12" ; transcript_name "LRP5-201" ; transcript_support_level 1 ; transcript_type protein_coding
LRP5--AP003071.2 HAVANA mRNA 1001 30833 . + . FI_gene_label "LRP5^ENSG00000162337.12" ; ID "LRP5--AP003071.2^ENST00000294304.12" ; Parent "LRP5--AP003071.2^LRP5^ENSG00000162337.12" ; ccdsid "CCDS8181.1" ; exon_id "ENSE00001413096.5" ; exon_number 1 ; gene_id "LRP5--AP003071.2^LRP5^ENSG00000162337.12" ; gene_name LRP5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167570.2" ; havana_transcript "OTTHUMT00000395088.2" ; hgnc_id "HGNC:6697" ; level 2 ; orig_coord_info "chr11,68312715,68312805,+" ; protein_id "ENSP00000294304.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "LRP5--AP003071.2^ENST00000294304.12" ; transcript_name "LRP5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
LRP5--MYEOV HAVANA gene 1001 30833 . + . FI_gene_label "LRP5^ENSG00000162337.12" ; ID "LRP5--MYEOV^LRP5^ENSG00000162337.12" ; ccdsid "CCDS8181.1" ; exon_id "ENSE00001413096.5" ; exon_number 1 ; gene_id "LRP5--MYEOV^LRP5^ENSG00000162337.12" ; gene_name LRP5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167570.2" ; havana_transcript "OTTHUMT00000395088.2" ; hgnc_id "HGNC:6697" ; level 2 ; orig_coord_info "chr11,68312715,68312805,+" ; protein_id "ENSP00000294304.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "LRP5--MYEOV^ENST00000294304.12" ; transcript_name "LRP5-201" ; transcript_support_level 1 ; transcript_type protein_coding
LRP5--MYEOV HAVANA mRNA 1001 30833 . + . FI_gene_label "LRP5^ENSG00000162337.12" ; ID "LRP5--MYEOV^ENST00000294304.12" ; Parent "LRP5--MYEOV^LRP5^ENSG00000162337.12" ; ccdsid "CCDS8181.1" ; exon_id "ENSE00001413096.5" ; exon_number 1 ; gene_id "LRP5--MYEOV^LRP5^ENSG00000162337.12" ; gene_name LRP5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167570.2" ; havana_transcript "OTTHUMT00000395088.2" ; hgnc_id "HGNC:6697" ; level 2 ; orig_coord_info "chr11,68312715,68312805,+" ; protein_id "ENSP00000294304.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "LRP5--MYEOV^ENST00000294304.12" ; transcript_name "LRP5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
LRP5--MYEOV HAVANA gene 33838 36970 . + . FI_gene_label "MYEOV^ENSG00000172927.8" ; ID "LRP5--MYEOV^MYEOV^ENSG00000172927.8" ; ccdsid "CCDS8190.1" ; exon_id "ENSE00001238663.5" ; exon_number 2 ; gene_id "LRP5--MYEOV^MYEOV^ENSG00000172927.8" ; gene_name MYEOV ; gene_type protein_coding ; havana_gene "OTTHUMG00000167836.5" ; havana_transcript "OTTHUMT00000396548.1" ; hgnc_id "HGNC:7563" ; level 2 ; orig_coord_info "chr11,69295355,69295495,+" ; protein_id "ENSP00000308330.3" ; tag alternative_5_UTR basic appris_principal_2 CCDS ; transcript_id "LRP5--MYEOV^ENST00000308946.3" ; transcript_name "MYEOV-201" ; transcript_support_level 1 ; transcript_type protein_coding
LRP5--MYEOV HAVANA mRNA 33838 36970 . + . FI_gene_label "MYEOV^ENSG00000172927.8" ; ID "LRP5--MYEOV^ENST00000308946.3" ; Parent "LRP5--MYEOV^MYEOV^ENSG00000172927.8" ; ccdsid "CCDS8190.1" ; exon_id "ENSE00001238663.5" ; exon_number 2 ; gene_id "LRP5--MYEOV^MYEOV^ENSG00000172927.8" ; gene_name MYEOV ; gene_type protein_coding ; havana_gene "OTTHUMG00000167836.5" ; havana_transcript "OTTHUMT00000396548.1" ; hgnc_id "HGNC:7563" ; level 2 ; orig_coord_info "chr11,69295355,69295495,+" ; protein_id "ENSP00000308330.3" ; tag alternative_5_UTR basic appris_principal_2 CCDS ; transcript_id "LRP5--MYEOV^ENST00000308946.3" ; transcript_name "MYEOV-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MAML1--CANX HAVANA gene 17229 40514 . + . FI_gene_label "CANX^ENSG00000127022.16" ; ID "MAML1--CANX^CANX^ENSG00000127022.16" ; ccdsid "CCDS4447.1" ; exon_id "ENSE00003651503.1" ; exon_number 2 ; gene_id "MAML1--CANX^CANX^ENSG00000127022.16" ; gene_name CANX ; gene_type protein_coding ; havana_gene "OTTHUMG00000130910.13" ; havana_transcript "OTTHUMT00000253500.3" ; hgnc_id "HGNC:1473" ; level 2 ; orig_coord_info "chr5,179705682,179705852,+" ; protein_id "ENSP00000247461.4" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "MAML1--CANX^ENST00000247461.9" ; transcript_name "CANX-201" ; transcript_support_level 1 ; transcript_type protein_coding
MAML1--CANX HAVANA mRNA 17229 40514 . + . FI_gene_label "CANX^ENSG00000127022.16" ; ID "MAML1--CANX^ENST00000247461.9" ; Parent "MAML1--CANX^CANX^ENSG00000127022.16" ; ccdsid "CCDS4447.1" ; exon_id "ENSE00003651503.1" ; exon_number 2 ; gene_id "MAML1--CANX^CANX^ENSG00000127022.16" ; gene_name CANX ; gene_type protein_coding ; havana_gene "OTTHUMG00000130910.13" ; havana_transcript "OTTHUMT00000253500.3" ; hgnc_id "HGNC:1473" ; level 2 ; orig_coord_info "chr5,179705682,179705852,+" ; protein_id "ENSP00000247461.4" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "MAML1--CANX^ENST00000247461.9" ; transcript_name "CANX-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MAML1--CANX HAVANA gene 1001 10967 . + . FI_gene_label "MAML1^ENSG00000161021.13" ; ID "MAML1--CANX^MAML1^ENSG00000161021.13" ; ccdsid "CCDS34315.1" ; exon_id "ENSE00001258912.4" ; exon_number 1 ; gene_id "MAML1--CANX^MAML1^ENSG00000161021.13" ; gene_name MAML1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163237.4" ; havana_transcript "OTTHUMT00000372316.3" ; hgnc_id "HGNC:13632" ; level 2 ; orig_coord_info "chr5,179733113,179733427,+" ; protein_id "ENSP00000292599.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MAML1--CANX^ENST00000292599.4" ; transcript_name "MAML1-201" ; transcript_support_level 1 ; transcript_type protein_coding
MAML1--CANX HAVANA mRNA 1001 10967 . + . FI_gene_label "MAML1^ENSG00000161021.13" ; ID "MAML1--CANX^ENST00000292599.4" ; Parent "MAML1--CANX^MAML1^ENSG00000161021.13" ; ccdsid "CCDS34315.1" ; exon_id "ENSE00001258912.4" ; exon_number 1 ; gene_id "MAML1--CANX^MAML1^ENSG00000161021.13" ; gene_name MAML1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163237.4" ; havana_transcript "OTTHUMT00000372316.3" ; hgnc_id "HGNC:13632" ; level 2 ; orig_coord_info "chr5,179733113,179733427,+" ; protein_id "ENSP00000292599.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MAML1--CANX^ENST00000292599.4" ; transcript_name "MAML1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MAP2K1--MAP2K5 HAVANA gene 17151 48817 . + . FI_gene_label "MAP2K5^ENSG00000137764.20" ; ID "MAP2K1--MAP2K5^MAP2K5^ENSG00000137764.20" ; ccdsid "CCDS10224.1" ; exon_id "ENSE00001917690.2" ; exon_number 1 ; gene_id "MAP2K1--MAP2K5^MAP2K5^ENSG00000137764.20" ; gene_name MAP2K5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133264.7" ; havana_transcript "OTTHUMT00000257041.2" ; hgnc_id "HGNC:6845" ; level 2 ; orig_coord_info "chr15,67543336,67543470,+" ; protein_id "ENSP00000178640.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MAP2K1--MAP2K5^ENST00000178640.10" ; transcript_name "MAP2K5-201" ; transcript_support_level 1 ; transcript_type protein_coding
MAP2K1--MAP2K5 HAVANA mRNA 17151 48817 . + . FI_gene_label "MAP2K5^ENSG00000137764.20" ; ID "MAP2K1--MAP2K5^ENST00000178640.10" ; Parent "MAP2K1--MAP2K5^MAP2K5^ENSG00000137764.20" ; ccdsid "CCDS10224.1" ; exon_id "ENSE00001917690.2" ; exon_number 1 ; gene_id "MAP2K1--MAP2K5^MAP2K5^ENSG00000137764.20" ; gene_name MAP2K5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133264.7" ; havana_transcript "OTTHUMT00000257041.2" ; hgnc_id "HGNC:6845" ; level 2 ; orig_coord_info "chr15,67543336,67543470,+" ; protein_id "ENSP00000178640.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MAP2K1--MAP2K5^ENST00000178640.10" ; transcript_name "MAP2K5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MAP2K1--MAP2K5 HAVANA gene 1076 14150 . + . FI_gene_label "MAP2K1^ENSG00000169032.10" ; ID "MAP2K1--MAP2K5^MAP2K1^ENSG00000169032.10" ; ccdsid "CCDS10216.1" ; exon_id "ENSE00001257104.5" ; exon_number 1 ; gene_id "MAP2K1--MAP2K5^MAP2K1^ENSG00000169032.10" ; gene_name MAP2K1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133196.5" ; havana_transcript "OTTHUMT00000256906.4" ; hgnc_id "HGNC:6840" ; level 2 ; orig_coord_info "chr15,66387348,66387427,+" ; protein_id "ENSP00000302486.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MAP2K1--MAP2K5^ENST00000307102.10" ; transcript_name "MAP2K1-201" ; transcript_support_level 1 ; transcript_type protein_coding
MAP2K1--MAP2K5 HAVANA mRNA 1076 14150 . + . FI_gene_label "MAP2K1^ENSG00000169032.10" ; ID "MAP2K1--MAP2K5^ENST00000307102.10" ; Parent "MAP2K1--MAP2K5^MAP2K1^ENSG00000169032.10" ; ccdsid "CCDS10216.1" ; exon_id "ENSE00001257104.5" ; exon_number 1 ; gene_id "MAP2K1--MAP2K5^MAP2K1^ENSG00000169032.10" ; gene_name MAP2K1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133196.5" ; havana_transcript "OTTHUMT00000256906.4" ; hgnc_id "HGNC:6840" ; level 2 ; orig_coord_info "chr15,66387348,66387427,+" ; protein_id "ENSP00000302486.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MAP2K1--MAP2K5^ENST00000307102.10" ; transcript_name "MAP2K1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MFHAS1--AC090993.1 HAVANA gene 1001 12868 . + . FI_gene_label "MFHAS1^ENSG00000147324.11" ; ID "MFHAS1--AC090993.1^MFHAS1^ENSG00000147324.11" ; ccdsid "CCDS34844.1" ; exon_id "ENSE00001019493.7" ; exon_number 1 ; gene_id "MFHAS1--AC090993.1^MFHAS1^ENSG00000147324.11" ; gene_name MFHAS1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163676.3" ; havana_transcript "OTTHUMT00000374724.3" ; hgnc_id "HGNC:16982" ; level 2 ; orig_coord_info "chr8,8890061,8893058,-" ; protein_id "ENSP00000276282.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MFHAS1--AC090993.1^ENST00000276282.7" ; transcript_name "MFHAS1-201" ; transcript_support_level 1 ; transcript_type protein_coding
MFHAS1--AC090993.1 HAVANA mRNA 1001 12868 . + . FI_gene_label "MFHAS1^ENSG00000147324.11" ; ID "MFHAS1--AC090993.1^ENST00000276282.7" ; Parent "MFHAS1--AC090993.1^MFHAS1^ENSG00000147324.11" ; ccdsid "CCDS34844.1" ; exon_id "ENSE00001019493.7" ; exon_number 1 ; gene_id "MFHAS1--AC090993.1^MFHAS1^ENSG00000147324.11" ; gene_name MFHAS1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163676.3" ; havana_transcript "OTTHUMT00000374724.3" ; hgnc_id "HGNC:16982" ; level 2 ; orig_coord_info "chr8,8890061,8893058,-" ; protein_id "ENSP00000276282.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MFHAS1--AC090993.1^ENST00000276282.7" ; transcript_name "MFHAS1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NOSTRIN--UBR3 HAVANA gene 26793 72516 . + . FI_gene_label "UBR3^ENSG00000144357.18" ; ID "NOSTRIN--UBR3^UBR3^ENSG00000144357.18" ; ccdsid "CCDS2238.2" ; exon_id "ENSE00001561306.2" ; exon_number 1 ; gene_id "NOSTRIN--UBR3^UBR3^ENSG00000144357.18" ; gene_name UBR3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132229.4" ; havana_transcript "OTTHUMT00000255290.3" ; hgnc_id "HGNC:30467" ; level 2 ; orig_coord_info "chr2,169827508,169828052,+" ; protein_id "ENSP00000272793.5" ; tag CAGE_supported_TSS non_canonical_conserved basic MANE_Select appris_principal_1 CCDS ; transcript_id "NOSTRIN--UBR3^ENST00000272793.11" ; transcript_name "UBR3-201" ; transcript_support_level 5 ; transcript_type protein_coding
NOSTRIN--UBR3 HAVANA mRNA 26793 72516 . + . FI_gene_label "UBR3^ENSG00000144357.18" ; ID "NOSTRIN--UBR3^ENST00000272793.11" ; Parent "NOSTRIN--UBR3^UBR3^ENSG00000144357.18" ; ccdsid "CCDS2238.2" ; exon_id "ENSE00001561306.2" ; exon_number 1 ; gene_id "NOSTRIN--UBR3^UBR3^ENSG00000144357.18" ; gene_name UBR3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132229.4" ; havana_transcript "OTTHUMT00000255290.3" ; hgnc_id "HGNC:30467" ; level 2 ; orig_coord_info "chr2,169827508,169828052,+" ; protein_id "ENSP00000272793.5" ; tag CAGE_supported_TSS non_canonical_conserved basic MANE_Select appris_principal_1 CCDS ; transcript_id "NOSTRIN--UBR3^ENST00000272793.11" ; transcript_name "UBR3-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
NOSTRIN--UBR3 HAVANA gene 5753 23792 . + . FI_gene_label "NOSTRIN^ENSG00000163072.16" ; ID "NOSTRIN--UBR3^NOSTRIN^ENSG00000163072.16" ; ccdsid "CCDS42771.1" ; exon_id "ENSE00001829457.2" ; exon_number 1 ; gene_id "NOSTRIN--UBR3^NOSTRIN^ENSG00000163072.16" ; gene_name NOSTRIN ; gene_type protein_coding ; havana_gene "OTTHUMG00000153990.20" ; havana_transcript "OTTHUMT00000333356.4" ; hgnc_id "HGNC:20203" ; level 2 ; orig_coord_info "chr2,168802647,168802673,+" ; protein_id "ENSP00000318921.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NOSTRIN--UBR3^ENST00000317647.12" ; transcript_name "NOSTRIN-201" ; transcript_support_level 1 ; transcript_type protein_coding
NOSTRIN--UBR3 HAVANA mRNA 5753 23792 . + . FI_gene_label "NOSTRIN^ENSG00000163072.16" ; ID "NOSTRIN--UBR3^ENST00000317647.12" ; Parent "NOSTRIN--UBR3^NOSTRIN^ENSG00000163072.16" ; ccdsid "CCDS42771.1" ; exon_id "ENSE00001829457.2" ; exon_number 1 ; gene_id "NOSTRIN--UBR3^NOSTRIN^ENSG00000163072.16" ; gene_name NOSTRIN ; gene_type protein_coding ; havana_gene "OTTHUMG00000153990.20" ; havana_transcript "OTTHUMT00000333356.4" ; hgnc_id "HGNC:20203" ; level 2 ; orig_coord_info "chr2,168802647,168802673,+" ; protein_id "ENSP00000318921.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NOSTRIN--UBR3^ENST00000317647.12" ; transcript_name "NOSTRIN-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NUP98--AC021749.1 HAVANA gene 1239 41800 . + . FI_gene_label "NUP98^ENSG00000110713.17" ; ID "NUP98--AC021749.1^NUP98^ENSG00000110713.17" ; ccdsid "CCDS7746.1" ; exon_id "ENSE00001331927.3" ; exon_number 2 ; gene_id "NUP98--AC021749.1^NUP98^ENSG00000110713.17" ; gene_name NUP98 ; gene_type protein_coding ; havana_gene "OTTHUMG00000011846.9" ; havana_transcript "OTTHUMT00000032766.4" ; hgnc_id "HGNC:8068" ; level 2 ; orig_coord_info "chr11,3782042,3782117,-" ; protein_id "ENSP00000316032.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NUP98--AC021749.1^ENST00000324932.12" ; transcript_name "NUP98-201" ; transcript_support_level 1 ; transcript_type protein_coding
NUP98--AC021749.1 HAVANA mRNA 1239 41800 . + . FI_gene_label "NUP98^ENSG00000110713.17" ; ID "NUP98--AC021749.1^ENST00000324932.12" ; Parent "NUP98--AC021749.1^NUP98^ENSG00000110713.17" ; ccdsid "CCDS7746.1" ; exon_id "ENSE00001331927.3" ; exon_number 2 ; gene_id "NUP98--AC021749.1^NUP98^ENSG00000110713.17" ; gene_name NUP98 ; gene_type protein_coding ; havana_gene "OTTHUMG00000011846.9" ; havana_transcript "OTTHUMT00000032766.4" ; hgnc_id "HGNC:8068" ; level 2 ; orig_coord_info "chr11,3782042,3782117,-" ; protein_id "ENSP00000316032.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NUP98--AC021749.1^ENST00000324932.12" ; transcript_name "NUP98-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NUP98--RNU6-99P HAVANA gene 1239 41800 . + . FI_gene_label "NUP98^ENSG00000110713.17" ; ID "NUP98--RNU6-99P^NUP98^ENSG00000110713.17" ; ccdsid "CCDS7746.1" ; exon_id "ENSE00001331927.3" ; exon_number 2 ; gene_id "NUP98--RNU6-99P^NUP98^ENSG00000110713.17" ; gene_name NUP98 ; gene_type protein_coding ; havana_gene "OTTHUMG00000011846.9" ; havana_transcript "OTTHUMT00000032766.4" ; hgnc_id "HGNC:8068" ; level 2 ; orig_coord_info "chr11,3782042,3782117,-" ; protein_id "ENSP00000316032.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NUP98--RNU6-99P^ENST00000324932.12" ; transcript_name "NUP98-201" ; transcript_support_level 1 ; transcript_type protein_coding
NUP98--RNU6-99P HAVANA mRNA 1239 41800 . + . FI_gene_label "NUP98^ENSG00000110713.17" ; ID "NUP98--RNU6-99P^ENST00000324932.12" ; Parent "NUP98--RNU6-99P^NUP98^ENSG00000110713.17" ; ccdsid "CCDS7746.1" ; exon_id "ENSE00001331927.3" ; exon_number 2 ; gene_id "NUP98--RNU6-99P^NUP98^ENSG00000110713.17" ; gene_name NUP98 ; gene_type protein_coding ; havana_gene "OTTHUMG00000011846.9" ; havana_transcript "OTTHUMT00000032766.4" ; hgnc_id "HGNC:8068" ; level 2 ; orig_coord_info "chr11,3782042,3782117,-" ; protein_id "ENSP00000316032.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NUP98--RNU6-99P^ENST00000324932.12" ; transcript_name "NUP98-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PIK3R1--ARRDC3-AS1 HAVANA gene 10321 19581 . + . FI_gene_label "PIK3R1^ENSG00000145675.15" ; ID "PIK3R1--ARRDC3-AS1^PIK3R1^ENSG00000145675.15" ; ccdsid "CCDS3994.1" ; exon_id "ENSE00001554869.2" ; exon_number 1 ; gene_id "PIK3R1--ARRDC3-AS1^PIK3R1^ENSG00000145675.15" ; gene_name PIK3R1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000131251.4" ; havana_transcript "OTTHUMT00000254014.2" ; hgnc_id "HGNC:8979" ; level 2 ; orig_coord_info "chr5,68288736,68288751,+" ; protein_id "ENSP00000323512.8" ; tag basic CCDS ; transcript_id "PIK3R1--ARRDC3-AS1^ENST00000320694.12" ; transcript_name "PIK3R1-201" ; transcript_support_level 1 ; transcript_type protein_coding
PIK3R1--ARRDC3-AS1 HAVANA mRNA 10321 19581 . + . FI_gene_label "PIK3R1^ENSG00000145675.15" ; ID "PIK3R1--ARRDC3-AS1^ENST00000320694.12" ; Parent "PIK3R1--ARRDC3-AS1^PIK3R1^ENSG00000145675.15" ; ccdsid "CCDS3994.1" ; exon_id "ENSE00001554869.2" ; exon_number 1 ; gene_id "PIK3R1--ARRDC3-AS1^PIK3R1^ENSG00000145675.15" ; gene_name PIK3R1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000131251.4" ; havana_transcript "OTTHUMT00000254014.2" ; hgnc_id "HGNC:8979" ; level 2 ; orig_coord_info "chr5,68288736,68288751,+" ; protein_id "ENSP00000323512.8" ; tag basic CCDS ; transcript_id "PIK3R1--ARRDC3-AS1^ENST00000320694.12" ; transcript_name "PIK3R1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PLAAT3--SLC22A10 HAVANA gene 2362 9635 . + . FI_gene_label "PLAAT3^ENSG00000176485.13" ; ID "PLAAT3--SLC22A10^PLAAT3^ENSG00000176485.13" ; ccdsid "CCDS8047.1" ; exon_id "ENSE00001364450.5" ; exon_number 1 ; gene_id "PLAAT3--SLC22A10^PLAAT3^ENSG00000176485.13" ; gene_name PLAAT3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167852.3" ; havana_transcript "OTTHUMT00000396632.1" ; hgnc_id "HGNC:17825" ; level 2 ; orig_coord_info "chr11,63614000,63614014,-" ; protein_id "ENSP00000320337.5" ; tag basic appris_principal_1 CCDS ; transcript_id "PLAAT3--SLC22A10^ENST00000323646.9" ; transcript_name "PLAAT3-201" ; transcript_support_level 1 ; transcript_type protein_coding
PLAAT3--SLC22A10 HAVANA mRNA 2362 9635 . + . FI_gene_label "PLAAT3^ENSG00000176485.13" ; ID "PLAAT3--SLC22A10^ENST00000323646.9" ; Parent "PLAAT3--SLC22A10^PLAAT3^ENSG00000176485.13" ; ccdsid "CCDS8047.1" ; exon_id "ENSE00001364450.5" ; exon_number 1 ; gene_id "PLAAT3--SLC22A10^PLAAT3^ENSG00000176485.13" ; gene_name PLAAT3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167852.3" ; havana_transcript "OTTHUMT00000396632.1" ; hgnc_id "HGNC:17825" ; level 2 ; orig_coord_info "chr11,63614000,63614014,-" ; protein_id "ENSP00000320337.5" ; tag basic appris_principal_1 CCDS ; transcript_id "PLAAT3--SLC22A10^ENST00000323646.9" ; transcript_name "PLAAT3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PLAAT3--SLC22A10 HAVANA gene 18060 27709 . + . FI_gene_label "SLC22A10^ENSG00000184999.12" ; ID "PLAAT3--SLC22A10^SLC22A10^ENSG00000184999.12" ; ccdsid "CCDS41661.1" ; exon_id "ENSE00002149469.2" ; exon_number 1 ; gene_id "PLAAT3--SLC22A10^SLC22A10^ENSG00000184999.12" ; gene_name SLC22A10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000165197.4" ; havana_transcript "OTTHUMT00000382622.4" ; hgnc_id "HGNC:18057" ; level 2 ; orig_coord_info "chr11,63290166,63290567,+" ; protein_id "ENSP00000327569.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PLAAT3--SLC22A10^ENST00000332793.11" ; transcript_name "SLC22A10-201" ; transcript_support_level 1 ; transcript_type protein_coding
PLAAT3--SLC22A10 HAVANA mRNA 18060 27709 . + . FI_gene_label "SLC22A10^ENSG00000184999.12" ; ID "PLAAT3--SLC22A10^ENST00000332793.11" ; Parent "PLAAT3--SLC22A10^SLC22A10^ENSG00000184999.12" ; ccdsid "CCDS41661.1" ; exon_id "ENSE00002149469.2" ; exon_number 1 ; gene_id "PLAAT3--SLC22A10^SLC22A10^ENSG00000184999.12" ; gene_name SLC22A10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000165197.4" ; havana_transcript "OTTHUMT00000382622.4" ; hgnc_id "HGNC:18057" ; level 2 ; orig_coord_info "chr11,63290166,63290567,+" ; protein_id "ENSP00000327569.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PLAAT3--SLC22A10^ENST00000332793.11" ; transcript_name "SLC22A10-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SFXN5--KNTC1 HAVANA gene 2056 36272 . + . FI_gene_label "SFXN5^ENSG00000144040.13" ; ID "SFXN5--KNTC1^SFXN5^ENSG00000144040.13" ; ccdsid "CCDS1922.1" ; exon_id "ENSE00002304141.2" ; exon_number 1 ; gene_id "SFXN5--KNTC1^SFXN5^ENSG00000144040.13" ; gene_name SFXN5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129775.9" ; havana_transcript "OTTHUMT00000251991.2" ; hgnc_id "HGNC:16073" ; level 2 ; orig_coord_info "chr2,73071604,73071705,-" ; protein_id "ENSP00000272433.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SFXN5--KNTC1^ENST00000272433.7" ; transcript_name "SFXN5-201" ; transcript_support_level 1 ; transcript_type protein_coding
SFXN5--KNTC1 HAVANA mRNA 2056 36272 . + . FI_gene_label "SFXN5^ENSG00000144040.13" ; ID "SFXN5--KNTC1^ENST00000272433.7" ; Parent "SFXN5--KNTC1^SFXN5^ENSG00000144040.13" ; ccdsid "CCDS1922.1" ; exon_id "ENSE00002304141.2" ; exon_number 1 ; gene_id "SFXN5--KNTC1^SFXN5^ENSG00000144040.13" ; gene_name SFXN5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129775.9" ; havana_transcript "OTTHUMT00000251991.2" ; hgnc_id "HGNC:16073" ; level 2 ; orig_coord_info "chr2,73071604,73071705,-" ; protein_id "ENSP00000272433.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SFXN5--KNTC1^ENST00000272433.7" ; transcript_name "SFXN5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SFXN5--KNTC1 HAVANA gene 39276 98096 . + . FI_gene_label "KNTC1^ENSG00000184445.12" ; ID "SFXN5--KNTC1^KNTC1^ENSG00000184445.12" ; ccdsid "CCDS45002.1" ; exon_id "ENSE00002214489.1" ; exon_number 2 ; gene_id "SFXN5--KNTC1^KNTC1^ENSG00000184445.12" ; gene_name KNTC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168861.7" ; havana_transcript "OTTHUMT00000396110.3" ; hgnc_id "HGNC:17255" ; level 2 ; orig_coord_info "chr12,122530064,122530192,+" ; protein_id "ENSP00000328236.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SFXN5--KNTC1^ENST00000333479.12" ; transcript_name "KNTC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
SFXN5--KNTC1 HAVANA mRNA 39276 98096 . + . FI_gene_label "KNTC1^ENSG00000184445.12" ; ID "SFXN5--KNTC1^ENST00000333479.12" ; Parent "SFXN5--KNTC1^KNTC1^ENSG00000184445.12" ; ccdsid "CCDS45002.1" ; exon_id "ENSE00002214489.1" ; exon_number 2 ; gene_id "SFXN5--KNTC1^KNTC1^ENSG00000184445.12" ; gene_name KNTC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168861.7" ; havana_transcript "OTTHUMT00000396110.3" ; hgnc_id "HGNC:17255" ; level 2 ; orig_coord_info "chr12,122530064,122530192,+" ; protein_id "ENSP00000328236.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SFXN5--KNTC1^ENST00000333479.12" ; transcript_name "KNTC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SMAD3--PIAS1 HAVANA gene 30257 55413 . + . FI_gene_label "PIAS1^ENSG00000033800.14" ; ID "SMAD3--PIAS1^PIAS1^ENSG00000033800.14" ; ccdsid "CCDS45290.1" ; exon_id "ENSE00001535807.4" ; exon_number 1 ; gene_id "SMAD3--PIAS1^PIAS1^ENSG00000033800.14" ; gene_name PIAS1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000172645.4" ; havana_transcript "OTTHUMT00000419642.3" ; hgnc_id "HGNC:2752" ; level 2 ; orig_coord_info "chr15,68054327,68054350,+" ; protein_id "ENSP00000249636.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SMAD3--PIAS1^ENST00000249636.11" ; transcript_name "PIAS1-201" ; transcript_support_level 1 ; transcript_type protein_coding
SMAD3--PIAS1 HAVANA mRNA 30257 55413 . + . FI_gene_label "PIAS1^ENSG00000033800.14" ; ID "SMAD3--PIAS1^ENST00000249636.11" ; Parent "SMAD3--PIAS1^PIAS1^ENSG00000033800.14" ; ccdsid "CCDS45290.1" ; exon_id "ENSE00001535807.4" ; exon_number 1 ; gene_id "SMAD3--PIAS1^PIAS1^ENSG00000033800.14" ; gene_name PIAS1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000172645.4" ; havana_transcript "OTTHUMT00000419642.3" ; hgnc_id "HGNC:2752" ; level 2 ; orig_coord_info "chr15,68054327,68054350,+" ; protein_id "ENSP00000249636.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SMAD3--PIAS1^ENST00000249636.11" ; transcript_name "PIAS1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SMAD3--PIAS1 HAVANA gene 2183 27246 . + . FI_gene_label "SMAD3^ENSG00000166949.17" ; ID "SMAD3--PIAS1^SMAD3^ENSG00000166949.17" ; ccdsid "CCDS10222.1" ; exon_id "ENSE00001346645.4" ; exon_number 1 ; gene_id "SMAD3--PIAS1^SMAD3^ENSG00000166949.17" ; gene_name SMAD3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133230.6" ; havana_transcript "OTTHUMT00000256967.3" ; hgnc_id "HGNC:6769" ; level 2 ; orig_coord_info "chr15,67066155,67066360,+" ; protein_id "ENSP00000332973.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SMAD3--PIAS1^ENST00000327367.9" ; transcript_name "SMAD3-201" ; transcript_support_level 1 ; transcript_type protein_coding
SMAD3--PIAS1 HAVANA mRNA 2183 27246 . + . FI_gene_label "SMAD3^ENSG00000166949.17" ; ID "SMAD3--PIAS1^ENST00000327367.9" ; Parent "SMAD3--PIAS1^SMAD3^ENSG00000166949.17" ; ccdsid "CCDS10222.1" ; exon_id "ENSE00001346645.4" ; exon_number 1 ; gene_id "SMAD3--PIAS1^SMAD3^ENSG00000166949.17" ; gene_name SMAD3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133230.6" ; havana_transcript "OTTHUMT00000256967.3" ; hgnc_id "HGNC:6769" ; level 2 ; orig_coord_info "chr15,67066155,67066360,+" ; protein_id "ENSP00000332973.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SMAD3--PIAS1^ENST00000327367.9" ; transcript_name "SMAD3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SUZ12P1--ADAP2 HAVANA gene 22212 35115 . + . FI_gene_label "ADAP2^ENSG00000184060.11" ; ID "SUZ12P1--ADAP2^ADAP2^ENSG00000184060.11" ; ccdsid "CCDS11261.1" ; exon_id "ENSE00003843162.1" ; exon_number 1 ; gene_id "SUZ12P1--ADAP2^ADAP2^ENSG00000184060.11" ; gene_name ADAP2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132868.5" ; havana_transcript "OTTHUMT00000256346.2" ; hgnc_id "HGNC:16487" ; level 2 ; orig_coord_info "chr17,30922015,30922108,+" ; protein_id "ENSP00000329468.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SUZ12P1--ADAP2^ENST00000330889.8" ; transcript_name "ADAP2-201" ; transcript_support_level 1 ; transcript_type protein_coding
SUZ12P1--ADAP2 HAVANA mRNA 22212 35115 . + . FI_gene_label "ADAP2^ENSG00000184060.11" ; ID "SUZ12P1--ADAP2^ENST00000330889.8" ; Parent "SUZ12P1--ADAP2^ADAP2^ENSG00000184060.11" ; ccdsid "CCDS11261.1" ; exon_id "ENSE00003843162.1" ; exon_number 1 ; gene_id "SUZ12P1--ADAP2^ADAP2^ENSG00000184060.11" ; gene_name ADAP2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132868.5" ; havana_transcript "OTTHUMT00000256346.2" ; hgnc_id "HGNC:16487" ; level 2 ; orig_coord_info "chr17,30922015,30922108,+" ; protein_id "ENSP00000329468.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SUZ12P1--ADAP2^ENST00000330889.8" ; transcript_name "ADAP2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TLK2--AC240565.1 HAVANA gene 4784 35054 . + . FI_gene_label "TLK2^ENSG00000146872.18" ; ID "TLK2--AC240565.1^TLK2^ENSG00000146872.18" ; ccdsid "CCDS62283.1" ; exon_id "ENSE00003568961.1" ; exon_number 2 ; gene_id "TLK2--AC240565.1^TLK2^ENSG00000146872.18" ; gene_name TLK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179176.3" ; havana_transcript "OTTHUMT00000445140.1" ; hgnc_id "HGNC:11842" ; level 2 ; orig_coord_info "chr17,62481126,62481206,+" ; protein_id "ENSP00000316512.9" ; tag basic CCDS ; transcript_id "TLK2--AC240565.1^ENST00000326270.13" ; transcript_name "TLK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
TLK2--AC240565.1 HAVANA mRNA 4784 35054 . + . FI_gene_label "TLK2^ENSG00000146872.18" ; ID "TLK2--AC240565.1^ENST00000326270.13" ; Parent "TLK2--AC240565.1^TLK2^ENSG00000146872.18" ; ccdsid "CCDS62283.1" ; exon_id "ENSE00003568961.1" ; exon_number 2 ; gene_id "TLK2--AC240565.1^TLK2^ENSG00000146872.18" ; gene_name TLK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179176.3" ; havana_transcript "OTTHUMT00000445140.1" ; hgnc_id "HGNC:11842" ; level 2 ; orig_coord_info "chr17,62481126,62481206,+" ; protein_id "ENSP00000316512.9" ; tag basic CCDS ; transcript_id "TLK2--AC240565.1^ENST00000326270.13" ; transcript_name "TLK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TP53--FXR2 HAVANA gene 19039 30639 . + . FI_gene_label "FXR2^ENSG00000129245.12" ; ID "TP53--FXR2^FXR2^ENSG00000129245.12" ; ccdsid "CCDS45604.1" ; exon_id "ENSE00001147605.5" ; exon_number 1 ; gene_id "TP53--FXR2^FXR2^ENSG00000129245.12" ; gene_name FXR2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000178237.3" ; havana_transcript "OTTHUMT00000441084.2" ; hgnc_id "HGNC:4024" ; level 2 ; orig_coord_info "chr17,7614452,7614532,-" ; protein_id "ENSP00000250113.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TP53--FXR2^ENST00000250113.12" ; transcript_name "FXR2-201" ; transcript_support_level 1 ; transcript_type protein_coding
TP53--FXR2 HAVANA mRNA 19039 30639 . + . FI_gene_label "FXR2^ENSG00000129245.12" ; ID "TP53--FXR2^ENST00000250113.12" ; Parent "TP53--FXR2^FXR2^ENSG00000129245.12" ; ccdsid "CCDS45604.1" ; exon_id "ENSE00001147605.5" ; exon_number 1 ; gene_id "TP53--FXR2^FXR2^ENSG00000129245.12" ; gene_name FXR2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000178237.3" ; havana_transcript "OTTHUMT00000441084.2" ; hgnc_id "HGNC:4024" ; level 2 ; orig_coord_info "chr17,7614452,7614532,-" ; protein_id "ENSP00000250113.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TP53--FXR2^ENST00000250113.12" ; transcript_name "FXR2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TP53--FXR2 HAVANA gene 1049 11797 . + . FI_gene_label "TP53^ENSG00000141510.18" ; ID "TP53--FXR2^TP53^ENSG00000141510.18" ; ccdsid "CCDS11118.1" ; exon_id "ENSE00002667911.1" ; exon_number 2 ; gene_id "TP53--FXR2^TP53^ENSG00000141510.18" ; gene_name TP53 ; gene_type protein_coding ; havana_gene "OTTHUMG00000162125.10" ; havana_transcript "OTTHUMT00000367397.3" ; hgnc_id "HGNC:11998" ; level 2 ; orig_coord_info "chr17,7676521,7676594,-" ; protein_id "ENSP00000269305.4" ; tag CAGE_supported_TSS basic MANE_Select appris_principal_1 CCDS ; transcript_id "TP53--FXR2^ENST00000269305.9" ; transcript_name "TP53-201" ; transcript_support_level 1 ; transcript_type protein_coding
TP53--FXR2 HAVANA mRNA 1049 11797 . + . FI_gene_label "TP53^ENSG00000141510.18" ; ID "TP53--FXR2^ENST00000269305.9" ; Parent "TP53--FXR2^TP53^ENSG00000141510.18" ; ccdsid "CCDS11118.1" ; exon_id "ENSE00002667911.1" ; exon_number 2 ; gene_id "TP53--FXR2^TP53^ENSG00000141510.18" ; gene_name TP53 ; gene_type protein_coding ; havana_gene "OTTHUMG00000162125.10" ; havana_transcript "OTTHUMT00000367397.3" ; hgnc_id "HGNC:11998" ; level 2 ; orig_coord_info "chr17,7676521,7676594,-" ; protein_id "ENSP00000269305.4" ; tag CAGE_supported_TSS basic MANE_Select appris_principal_1 CCDS ; transcript_id "TP53--FXR2^ENST00000269305.9" ; transcript_name "TP53-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TVP23C--CDRT4 HAVANA gene 1052 15760 . + . FI_gene_label "TVP23C^ENSG00000175106.17" ; ID "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; ccdsid "CCDS11170.1" ; exon_id "ENSE00001105678.2" ; exon_number 1 ; gene_id "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; gene_name TVP23C ; gene_type protein_coding ; havana_gene "OTTHUMG00000171461.10" ; havana_transcript "OTTHUMT00000130705.3" ; hgnc_id "HGNC:30453" ; level 2 ; orig_coord_info "chr17,15563437,15563448,-" ; protein_id "ENSP00000225576.3" ; tag basic CCDS ; transcript_id "TVP23C--CDRT4^ENST00000225576.7" ; transcript_name "TVP23C-201" ; transcript_support_level 1 ; transcript_type protein_coding
TVP23C--CDRT4 HAVANA mRNA 1052 15760 . + . FI_gene_label "TVP23C^ENSG00000175106.17" ; ID "TVP23C--CDRT4^ENST00000225576.7" ; Parent "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; ccdsid "CCDS11170.1" ; exon_id "ENSE00001105678.2" ; exon_number 1 ; gene_id "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; gene_name TVP23C ; gene_type protein_coding ; havana_gene "OTTHUMG00000171461.10" ; havana_transcript "OTTHUMT00000130705.3" ; hgnc_id "HGNC:30453" ; level 2 ; orig_coord_info "chr17,15563437,15563448,-" ; protein_id "ENSP00000225576.3" ; tag basic CCDS ; transcript_id "TVP23C--CDRT4^ENST00000225576.7" ; transcript_name "TVP23C-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TVP23C--CDRT4 HAVANA gene 19889 25887 . + . FI_gene_label "CDRT4^ENSG00000239704.11" ; ID "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; ccdsid "CCDS73995.1" ; exon_id "ENSE00003735347.1" ; exon_number 3 ; gene_id "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; gene_name CDRT4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059070.14" ; havana_transcript "OTTHUMT00000130383.9" ; hgnc_id "HGNC:14383" ; level 2 ; orig_coord_info "chr17,15440208,15440238,-" ; protein_id "ENSP00000482523.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TVP23C--CDRT4^ENST00000619038.5" ; transcript_name "CDRT4-204" ; transcript_support_level 1 ; transcript_type protein_coding
TVP23C--CDRT4 HAVANA mRNA 19889 25887 . + . FI_gene_label "CDRT4^ENSG00000239704.11" ; ID "TVP23C--CDRT4^ENST00000619038.5" ; Parent "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; ccdsid "CCDS73995.1" ; exon_id "ENSE00003735347.1" ; exon_number 3 ; gene_id "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; gene_name CDRT4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059070.14" ; havana_transcript "OTTHUMT00000130383.9" ; hgnc_id "HGNC:14383" ; level 2 ; orig_coord_info "chr17,15440208,15440238,-" ; protein_id "ENSP00000482523.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TVP23C--CDRT4^ENST00000619038.5" ; transcript_name "CDRT4-204" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AC015911.9--SLFN12L HAVANA gene 1001 1691 . + . FI_gene_label "AC015911.9^ENSG00000286030.2" ; ID "AC015911.9--SLFN12L^AC015911.9^ENSG00000286030.2" ; exon_id "ENSE00003850003.2" ; exon_number 1 ; gene_id "AC015911.9--SLFN12L^AC015911.9^ENSG00000286030.2" ; gene_name "AC015911.9" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000193507.2" ; havana_transcript "OTTHUMT00000502481.2" ; level 2 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr17,35522279,35522969,-" ; tag basic ; transcript_id "AC015911.9--SLFN12L^ENST00000650652.2" ; transcript_name "AC015911.9-201" ; transcript_type transcribed_unprocessed_pseudogene
AC015911.9--SLFN12L HAVANA RNA 1001 1691 . + . FI_gene_label "AC015911.9^ENSG00000286030.2" ; ID "AC015911.9--SLFN12L^ENST00000650652.2" ; Parent "AC015911.9--SLFN12L^AC015911.9^ENSG00000286030.2" ; exon_id "ENSE00003850003.2" ; exon_number 1 ; gene_id "AC015911.9--SLFN12L^AC015911.9^ENSG00000286030.2" ; gene_name "AC015911.9" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000193507.2" ; havana_transcript "OTTHUMT00000502481.2" ; level 2 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr17,35522279,35522969,-" ; tag basic ; transcript_id "AC015911.9--SLFN12L^ENST00000650652.2" ; transcript_name "AC015911.9-201" ; transcript_type transcribed_unprocessed_pseudogene
L1 and L2 created:
AC015911.9--SLFN12L ENSEMBL gene 5824 9825 . + . FI_gene_label "SLFN12L^ENSG00000286065.2" ; ID "AC015911.9--SLFN12L^SLFN12L^ENSG00000286065.2" ; exon_id "ENSE00003899764.1" ; exon_number 1 ; gene_id "AC015911.9--SLFN12L^SLFN12L^ENSG00000286065.2" ; gene_name SLFN12L ; gene_type lncRNA ; havana_gene "OTTHUMG00000167707.2" ; hgnc_id "HGNC:33920" ; level 3 ; orig_coord_info "chr17,35480502,35480513,-" ; transcript_id "AC015911.9--SLFN12L^ENST00000675965.1" ; transcript_name "SLFN12L-206" ; transcript_type lncRNA
AC015911.9--SLFN12L ENSEMBL RNA 5824 9825 . + . FI_gene_label "SLFN12L^ENSG00000286065.2" ; ID "AC015911.9--SLFN12L^ENST00000675965.1" ; Parent "AC015911.9--SLFN12L^SLFN12L^ENSG00000286065.2" ; exon_id "ENSE00003899764.1" ; exon_number 1 ; gene_id "AC015911.9--SLFN12L^SLFN12L^ENSG00000286065.2" ; gene_name SLFN12L ; gene_type lncRNA ; havana_gene "OTTHUMG00000167707.2" ; hgnc_id "HGNC:33920" ; level 3 ; orig_coord_info "chr17,35480502,35480513,-" ; transcript_id "AC015911.9--SLFN12L^ENST00000675965.1" ; transcript_name "SLFN12L-206" ; transcript_type lncRNA
L1 and L2 created:
ACADVL--MT-RNR2 ENSEMBL gene 11118 12676 . + . FI_gene_label "MT-RNR2^ENSG00000210082.2" ; ID "ACADVL--MT-RNR2^MT-RNR2^ENSG00000210082.2" ; exon_id "ENSE00001544497.2" ; exon_number 1 ; gene_id "ACADVL--MT-RNR2^MT-RNR2^ENSG00000210082.2" ; gene_name "MT-RNR2" ; gene_type Mt_rRNA ; hgnc_id "HGNC:7471" ; level 3 ; orig_coord_info "chrM,1671,3229,+" ; tag basic ; transcript_id "ACADVL--MT-RNR2^ENST00000387347.2" ; transcript_name "MT-RNR2-201" ; transcript_support_level NA ; transcript_type Mt_rRNA
ACADVL--MT-RNR2 ENSEMBL RNA 11118 12676 . + . FI_gene_label "MT-RNR2^ENSG00000210082.2" ; ID "ACADVL--MT-RNR2^ENST00000387347.2" ; Parent "ACADVL--MT-RNR2^MT-RNR2^ENSG00000210082.2" ; exon_id "ENSE00001544497.2" ; exon_number 1 ; gene_id "ACADVL--MT-RNR2^MT-RNR2^ENSG00000210082.2" ; gene_name "MT-RNR2" ; gene_type Mt_rRNA ; hgnc_id "HGNC:7471" ; level 3 ; orig_coord_info "chrM,1671,3229,+" ; tag basic ; transcript_id "ACADVL--MT-RNR2^ENST00000387347.2" ; transcript_name "MT-RNR2-201" ; transcript_support_level NA ; transcript_type Mt_rRNA
L1 and L2 created:
COX6CP1--COX6C HAVANA gene 1001 1215 . + . FI_gene_label "COX6CP1^ENSG00000260318.1" ; ID "COX6CP1--COX6C^COX6CP1^ENSG00000260318.1" ; exon_id "ENSE00002587981.1" ; exon_number 1 ; gene_id "COX6CP1--COX6C^COX6CP1^ENSG00000260318.1" ; gene_name COX6CP1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000172958.1" ; havana_transcript "OTTHUMT00000421521.1" ; hgnc_id "HGNC:2286" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr16,11903923,11904137,-" ; tag pseudo_consens basic ; transcript_id "COX6CP1--COX6C^ENST00000564972.1" ; transcript_name "COX6CP1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
COX6CP1--COX6C HAVANA RNA 1001 1215 . + . FI_gene_label "COX6CP1^ENSG00000260318.1" ; ID "COX6CP1--COX6C^ENST00000564972.1" ; Parent "COX6CP1--COX6C^COX6CP1^ENSG00000260318.1" ; exon_id "ENSE00002587981.1" ; exon_number 1 ; gene_id "COX6CP1--COX6C^COX6CP1^ENSG00000260318.1" ; gene_name COX6CP1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000172958.1" ; havana_transcript "OTTHUMT00000421521.1" ; hgnc_id "HGNC:2286" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr16,11903923,11904137,-" ; tag pseudo_consens basic ; transcript_id "COX6CP1--COX6C^ENST00000564972.1" ; transcript_name "COX6CP1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
DNM1L--AC024405.1 HAVANA gene 28229 34126 . + . FI_gene_label "AC024405.1^ENSG00000214883.4" ; ID "DNM1L--AC024405.1^AC024405.1^ENSG00000214883.4" ; exon_id "ENSE00002189224.2" ; exon_number 1 ; gene_id "DNM1L--AC024405.1^AC024405.1^ENSG00000214883.4" ; gene_name "AC024405.1" ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000166694.3" ; havana_transcript "OTTHUMT00000391123.3" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr11,50409042,50409188,+" ; tag basic ; transcript_id "DNM1L--AC024405.1^ENST00000532521.2" ; transcript_name "AC024405.1-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
DNM1L--AC024405.1 HAVANA RNA 28229 34126 . + . FI_gene_label "AC024405.1^ENSG00000214883.4" ; ID "DNM1L--AC024405.1^ENST00000532521.2" ; Parent "DNM1L--AC024405.1^AC024405.1^ENSG00000214883.4" ; exon_id "ENSE00002189224.2" ; exon_number 1 ; gene_id "DNM1L--AC024405.1^AC024405.1^ENSG00000214883.4" ; gene_name "AC024405.1" ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000166694.3" ; havana_transcript "OTTHUMT00000391123.3" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr11,50409042,50409188,+" ; tag basic ; transcript_id "DNM1L--AC024405.1^ENST00000532521.2" ; transcript_name "AC024405.1-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
L1 and L2 created:
DNM1L--OR4C50P HAVANA gene 28229 29158 . + . FI_gene_label "OR4C50P^ENSG00000237610.1" ; ID "DNM1L--OR4C50P^OR4C50P^ENSG00000237610.1" ; exon_id "ENSE00001684660.1" ; exon_number 1 ; gene_id "DNM1L--OR4C50P^OR4C50P^ENSG00000237610.1" ; gene_name OR4C50P ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000154323.1" ; havana_transcript "OTTHUMT00000334836.1" ; hgnc_id "HGNC:31274" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr11,54591480,54592409,+" ; tag basic ; transcript_id "DNM1L--OR4C50P^ENST00000330155.3" ; transcript_name "OR4C50P-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
DNM1L--OR4C50P HAVANA RNA 28229 29158 . + . FI_gene_label "OR4C50P^ENSG00000237610.1" ; ID "DNM1L--OR4C50P^ENST00000330155.3" ; Parent "DNM1L--OR4C50P^OR4C50P^ENSG00000237610.1" ; exon_id "ENSE00001684660.1" ; exon_number 1 ; gene_id "DNM1L--OR4C50P^OR4C50P^ENSG00000237610.1" ; gene_name OR4C50P ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000154323.1" ; havana_transcript "OTTHUMT00000334836.1" ; hgnc_id "HGNC:31274" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr11,54591480,54592409,+" ; tag basic ; transcript_id "DNM1L--OR4C50P^ENST00000330155.3" ; transcript_name "OR4C50P-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
L1 and L2 created:
GUCY1B2--NKAIN2 HAVANA gene 2157 15439 . + . FI_gene_label "GUCY1B2^ENSG00000123201.14" ; ID "GUCY1B2--NKAIN2^GUCY1B2^ENSG00000123201.14" ; exon_id "ENSE00001531871.1" ; exon_number 1 ; gene_id "GUCY1B2--NKAIN2^GUCY1B2^ENSG00000123201.14" ; gene_name GUCY1B2 ; gene_type transcribed_unitary_pseudogene ; havana_gene "OTTHUMG00000016940.5" ; havana_transcript "OTTHUMT00000045017.2" ; hgnc_id "HGNC:4686" ; level 2 ; orig_coord_info "chr13,51065951,51066207,-" ; transcript_id "GUCY1B2--NKAIN2^ENST00000389600.6" ; transcript_name "GUCY1B2-201" ; transcript_support_level 5 ; transcript_type processed_transcript
GUCY1B2--NKAIN2 HAVANA RNA 2157 15439 . + . FI_gene_label "GUCY1B2^ENSG00000123201.14" ; ID "GUCY1B2--NKAIN2^ENST00000389600.6" ; Parent "GUCY1B2--NKAIN2^GUCY1B2^ENSG00000123201.14" ; exon_id "ENSE00001531871.1" ; exon_number 1 ; gene_id "GUCY1B2--NKAIN2^GUCY1B2^ENSG00000123201.14" ; gene_name GUCY1B2 ; gene_type transcribed_unitary_pseudogene ; havana_gene "OTTHUMG00000016940.5" ; havana_transcript "OTTHUMT00000045017.2" ; hgnc_id "HGNC:4686" ; level 2 ; orig_coord_info "chr13,51065951,51066207,-" ; transcript_id "GUCY1B2--NKAIN2^ENST00000389600.6" ; transcript_name "GUCY1B2-201" ; transcript_support_level 5 ; transcript_type processed_transcript
L1 and L2 created:
KCNQ1--AC021749.1 HAVANA gene 25442 26048 . + . FI_gene_label "AC021749.1^ENSG00000270588.1" ; ID "KCNQ1--AC021749.1^AC021749.1^ENSG00000270588.1" ; exon_id "ENSE00003541718.1" ; exon_number 1 ; gene_id "KCNQ1--AC021749.1^AC021749.1^ENSG00000270588.1" ; gene_name "AC021749.1" ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000184766.1" ; havana_transcript "OTTHUMT00000469164.1" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr11,39873782,39874388,+" ; tag pseudo_consens basic ; transcript_id "KCNQ1--AC021749.1^ENST00000604322.1" ; transcript_name "AC021749.1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
KCNQ1--AC021749.1 HAVANA RNA 25442 26048 . + . FI_gene_label "AC021749.1^ENSG00000270588.1" ; ID "KCNQ1--AC021749.1^ENST00000604322.1" ; Parent "KCNQ1--AC021749.1^AC021749.1^ENSG00000270588.1" ; exon_id "ENSE00003541718.1" ; exon_number 1 ; gene_id "KCNQ1--AC021749.1^AC021749.1^ENSG00000270588.1" ; gene_name "AC021749.1" ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000184766.1" ; havana_transcript "OTTHUMT00000469164.1" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr11,39873782,39874388,+" ; tag pseudo_consens basic ; transcript_id "KCNQ1--AC021749.1^ENST00000604322.1" ; transcript_name "AC021749.1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
KCNQ1--RNU6-99P ENSEMBL gene 25442 25548 . + . FI_gene_label "RNU6-99P^ENSG00000201591.1" ; ID "KCNQ1--RNU6-99P^RNU6-99P^ENSG00000201591.1" ; exon_id "ENSE00001806982.1" ; exon_number 1 ; gene_id "KCNQ1--RNU6-99P^RNU6-99P^ENSG00000201591.1" ; gene_name "RNU6-99P" ; gene_type snRNA ; hgnc_id "HGNC:47062" ; level 3 ; orig_coord_info "chr11,39261107,39261213,+" ; tag basic ; transcript_id "KCNQ1--RNU6-99P^ENST00000364721.1" ; transcript_name "RNU6-99P-201" ; transcript_support_level NA ; transcript_type snRNA
KCNQ1--RNU6-99P ENSEMBL RNA 25442 25548 . + . FI_gene_label "RNU6-99P^ENSG00000201591.1" ; ID "KCNQ1--RNU6-99P^ENST00000364721.1" ; Parent "KCNQ1--RNU6-99P^RNU6-99P^ENSG00000201591.1" ; exon_id "ENSE00001806982.1" ; exon_number 1 ; gene_id "KCNQ1--RNU6-99P^RNU6-99P^ENSG00000201591.1" ; gene_name "RNU6-99P" ; gene_type snRNA ; hgnc_id "HGNC:47062" ; level 3 ; orig_coord_info "chr11,39261107,39261213,+" ; tag basic ; transcript_id "KCNQ1--RNU6-99P^ENST00000364721.1" ; transcript_name "RNU6-99P-201" ; transcript_support_level NA ; transcript_type snRNA
L1 and L2 created:
LRP5--AP003071.2 HAVANA gene 33834 36823 . + . FI_gene_label "AP003071.2^ENSG00000261070.1" ; ID "LRP5--AP003071.2^AP003071.2^ENSG00000261070.1" ; exon_id "ENSE00002579099.1" ; exon_number 1 ; gene_id "LRP5--AP003071.2^AP003071.2^ENSG00000261070.1" ; gene_name "AP003071.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000172973.1" ; havana_transcript "OTTHUMT00000421556.1" ; level 2 ; orig_coord_info "chr11,69171199,69171564,-" ; tag basic ; transcript_id "LRP5--AP003071.2^ENST00000562772.1" ; transcript_name "AP003071.2-201" ; transcript_support_level 1 ; transcript_type lncRNA
LRP5--AP003071.2 HAVANA RNA 33834 36823 . + . FI_gene_label "AP003071.2^ENSG00000261070.1" ; ID "LRP5--AP003071.2^ENST00000562772.1" ; Parent "LRP5--AP003071.2^AP003071.2^ENSG00000261070.1" ; exon_id "ENSE00002579099.1" ; exon_number 1 ; gene_id "LRP5--AP003071.2^AP003071.2^ENSG00000261070.1" ; gene_name "AP003071.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000172973.1" ; havana_transcript "OTTHUMT00000421556.1" ; level 2 ; orig_coord_info "chr11,69171199,69171564,-" ; tag basic ; transcript_id "LRP5--AP003071.2^ENST00000562772.1" ; transcript_name "AP003071.2-201" ; transcript_support_level 1 ; transcript_type lncRNA
L1 and L2 created:
MFHAS1--AC090993.1 HAVANA gene 15869 20358 . + . FI_gene_label "AC090993.1^ENSG00000253108.1" ; ID "MFHAS1--AC090993.1^AC090993.1^ENSG00000253108.1" ; exon_id "ENSE00002091439.1" ; exon_number 1 ; gene_id "MFHAS1--AC090993.1^AC090993.1^ENSG00000253108.1" ; gene_name "AC090993.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000163990.1" ; havana_transcript "OTTHUMT00000376665.1" ; level 2 ; orig_coord_info "chr8,34228439,34228512,+" ; tag basic ; transcript_id "MFHAS1--AC090993.1^ENST00000522460.1" ; transcript_name "AC090993.1-201" ; transcript_support_level 3 ; transcript_type lncRNA
MFHAS1--AC090993.1 HAVANA RNA 15869 20358 . + . FI_gene_label "AC090993.1^ENSG00000253108.1" ; ID "MFHAS1--AC090993.1^ENST00000522460.1" ; Parent "MFHAS1--AC090993.1^AC090993.1^ENSG00000253108.1" ; exon_id "ENSE00002091439.1" ; exon_number 1 ; gene_id "MFHAS1--AC090993.1^AC090993.1^ENSG00000253108.1" ; gene_name "AC090993.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000163990.1" ; havana_transcript "OTTHUMT00000376665.1" ; level 2 ; orig_coord_info "chr8,34228439,34228512,+" ; tag basic ; transcript_id "MFHAS1--AC090993.1^ENST00000522460.1" ; transcript_name "AC090993.1-201" ; transcript_support_level 3 ; transcript_type lncRNA
L1 and L2 created:
NUP98--AC021749.1 HAVANA gene 46143 46749 . + . FI_gene_label "AC021749.1^ENSG00000270588.1" ; ID "NUP98--AC021749.1^AC021749.1^ENSG00000270588.1" ; exon_id "ENSE00003541718.1" ; exon_number 1 ; gene_id "NUP98--AC021749.1^AC021749.1^ENSG00000270588.1" ; gene_name "AC021749.1" ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000184766.1" ; havana_transcript "OTTHUMT00000469164.1" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr11,39873782,39874388,+" ; tag pseudo_consens basic ; transcript_id "NUP98--AC021749.1^ENST00000604322.1" ; transcript_name "AC021749.1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
NUP98--AC021749.1 HAVANA RNA 46143 46749 . + . FI_gene_label "AC021749.1^ENSG00000270588.1" ; ID "NUP98--AC021749.1^ENST00000604322.1" ; Parent "NUP98--AC021749.1^AC021749.1^ENSG00000270588.1" ; exon_id "ENSE00003541718.1" ; exon_number 1 ; gene_id "NUP98--AC021749.1^AC021749.1^ENSG00000270588.1" ; gene_name "AC021749.1" ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000184766.1" ; havana_transcript "OTTHUMT00000469164.1" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr11,39873782,39874388,+" ; tag pseudo_consens basic ; transcript_id "NUP98--AC021749.1^ENST00000604322.1" ; transcript_name "AC021749.1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
NUP98--RNU6-99P ENSEMBL gene 46143 46249 . + . FI_gene_label "RNU6-99P^ENSG00000201591.1" ; ID "NUP98--RNU6-99P^RNU6-99P^ENSG00000201591.1" ; exon_id "ENSE00001806982.1" ; exon_number 1 ; gene_id "NUP98--RNU6-99P^RNU6-99P^ENSG00000201591.1" ; gene_name "RNU6-99P" ; gene_type snRNA ; hgnc_id "HGNC:47062" ; level 3 ; orig_coord_info "chr11,39261107,39261213,+" ; tag basic ; transcript_id "NUP98--RNU6-99P^ENST00000364721.1" ; transcript_name "RNU6-99P-201" ; transcript_support_level NA ; transcript_type snRNA
NUP98--RNU6-99P ENSEMBL RNA 46143 46249 . + . FI_gene_label "RNU6-99P^ENSG00000201591.1" ; ID "NUP98--RNU6-99P^ENST00000364721.1" ; Parent "NUP98--RNU6-99P^RNU6-99P^ENSG00000201591.1" ; exon_id "ENSE00001806982.1" ; exon_number 1 ; gene_id "NUP98--RNU6-99P^RNU6-99P^ENSG00000201591.1" ; gene_name "RNU6-99P" ; gene_type snRNA ; hgnc_id "HGNC:47062" ; level 3 ; orig_coord_info "chr11,39261107,39261213,+" ; tag basic ; transcript_id "NUP98--RNU6-99P^ENST00000364721.1" ; transcript_name "RNU6-99P-201" ; transcript_support_level NA ; transcript_type snRNA
L1 and L2 created:
PIK3R1--ARRDC3-AS1 HAVANA gene 25820 29402 . + . FI_gene_label "ARRDC3-AS1^ENSG00000281357.3" ; ID "PIK3R1--ARRDC3-AS1^ARRDC3-AS1^ENSG00000281357.3" ; exon_id "ENSE00003766580.1" ; exon_number 1 ; gene_id "PIK3R1--ARRDC3-AS1^ARRDC3-AS1^ENSG00000281357.3" ; gene_name "ARRDC3-AS1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000189546.2" ; havana_transcript "OTTHUMT00000479945.1" ; hgnc_id "HGNC:44145" ; level 2 ; orig_coord_info "chr5,91380349,91380924,+" ; tag basic ; transcript_id "PIK3R1--ARRDC3-AS1^ENST00000625713.2" ; transcript_name "ARRDC3-AS1-201" ; transcript_support_level 2 ; transcript_type lncRNA
PIK3R1--ARRDC3-AS1 HAVANA RNA 25820 29402 . + . FI_gene_label "ARRDC3-AS1^ENSG00000281357.3" ; ID "PIK3R1--ARRDC3-AS1^ENST00000625713.2" ; Parent "PIK3R1--ARRDC3-AS1^ARRDC3-AS1^ENSG00000281357.3" ; exon_id "ENSE00003766580.1" ; exon_number 1 ; gene_id "PIK3R1--ARRDC3-AS1^ARRDC3-AS1^ENSG00000281357.3" ; gene_name "ARRDC3-AS1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000189546.2" ; havana_transcript "OTTHUMT00000479945.1" ; hgnc_id "HGNC:44145" ; level 2 ; orig_coord_info "chr5,91380349,91380924,+" ; tag basic ; transcript_id "PIK3R1--ARRDC3-AS1^ENST00000625713.2" ; transcript_name "ARRDC3-AS1-201" ; transcript_support_level 2 ; transcript_type lncRNA
L1 and L2 created:
SUZ12P1--ADAP2 HAVANA gene 2514 7684 . + . FI_gene_label "SUZ12P1^ENSG00000264538.6" ; ID "SUZ12P1--ADAP2^SUZ12P1^ENSG00000264538.6" ; exon_id "ENSE00002690561.1" ; exon_number 1 ; gene_id "SUZ12P1--ADAP2^SUZ12P1^ENSG00000264538.6" ; gene_name SUZ12P1 ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000178989.2" ; havana_transcript "OTTHUMT00000444258.1" ; hgnc_id "HGNC:32421" ; level 2 ; orig_coord_info "chr17,30731706,30732123,+" ; transcript_id "SUZ12P1--ADAP2^ENST00000497969.6" ; transcript_name "SUZ12P1-201" ; transcript_support_level 1 ; transcript_type processed_transcript
SUZ12P1--ADAP2 HAVANA RNA 2514 7684 . + . FI_gene_label "SUZ12P1^ENSG00000264538.6" ; ID "SUZ12P1--ADAP2^ENST00000497969.6" ; Parent "SUZ12P1--ADAP2^SUZ12P1^ENSG00000264538.6" ; exon_id "ENSE00002690561.1" ; exon_number 1 ; gene_id "SUZ12P1--ADAP2^SUZ12P1^ENSG00000264538.6" ; gene_name SUZ12P1 ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000178989.2" ; havana_transcript "OTTHUMT00000444258.1" ; hgnc_id "HGNC:32421" ; level 2 ; orig_coord_info "chr17,30731706,30732123,+" ; transcript_id "SUZ12P1--ADAP2^ENST00000497969.6" ; transcript_name "SUZ12P1-201" ; transcript_support_level 1 ; transcript_type processed_transcript
L1 and L2 created:
TLK2--AC240565.1 HAVANA gene 40046 48301 . + . FI_gene_label "AC240565.1^ENSG00000280136.2" ; ID "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2" ; exon_id "ENSE00003756821.1" ; exon_number 1 ; gene_id "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2" ; gene_name "AC240565.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000189256.2" ; havana_transcript "OTTHUMT00000479189.2" ; level 2 ; orig_coord_info "chr17,118383,118578,-" ; tag not_best_in_genome_evidence basic ; transcript_id "TLK2--AC240565.1^ENST00000624936.2" ; transcript_name "AC240565.1-201" ; transcript_support_level 5 ; transcript_type lncRNA
TLK2--AC240565.1 HAVANA RNA 40046 48301 . + . FI_gene_label "AC240565.1^ENSG00000280136.2" ; ID "TLK2--AC240565.1^ENST00000624936.2" ; Parent "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2" ; exon_id "ENSE00003756821.1" ; exon_number 1 ; gene_id "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2" ; gene_name "AC240565.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000189256.2" ; havana_transcript "OTTHUMT00000479189.2" ; level 2 ; orig_coord_info "chr17,118383,118578,-" ; tag not_best_in_genome_evidence basic ; transcript_id "TLK2--AC240565.1^ENST00000624936.2" ; transcript_name "AC240565.1-201" ; transcript_support_level 5 ; transcript_type lncRNA
L1 and L2 created:
TLK2P1--AC110079.1 HAVANA gene 1001 4192 . + . FI_gene_label "TLK2P1^ENSG00000226049.3" ; ID "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; exon_id "ENSE00002174619.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; gene_name TLK2P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000166422.1" ; havana_transcript "OTTHUMT00000389700.1" ; hgnc_id "HGNC:18048" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr17,34036681,34039872,-" ; tag pseudo_consens basic ; transcript_id "TLK2P1--AC110079.1^ENST00000530992.1" ; transcript_name "TLK2P1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
TLK2P1--AC110079.1 HAVANA RNA 1001 4192 . + . FI_gene_label "TLK2P1^ENSG00000226049.3" ; ID "TLK2P1--AC110079.1^ENST00000530992.1" ; Parent "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; exon_id "ENSE00002174619.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; gene_name TLK2P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000166422.1" ; havana_transcript "OTTHUMT00000389700.1" ; hgnc_id "HGNC:18048" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr17,34036681,34039872,-" ; tag pseudo_consens basic ; transcript_id "TLK2P1--AC110079.1^ENST00000530992.1" ; transcript_name "TLK2P1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
TLK2P1--AC110079.1 HAVANA gene 7193 19707 . + . FI_gene_label "AC110079.1^ENSG00000260404.3" ; ID "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; exon_id "ENSE00002625896.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; gene_name "AC110079.1" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000161164.4" ; havana_transcript "OTTHUMT00000364170.2" ; level 2 ; orig_coord_info "chr4,118591773,118591895,+" ; tag dotter_confirmed basic ; transcript_id "TLK2P1--AC110079.1^ENST00000567913.2" ; transcript_name "AC110079.1-201" ; transcript_support_level 5 ; transcript_type processed_transcript
TLK2P1--AC110079.1 HAVANA RNA 7193 19707 . + . FI_gene_label "AC110079.1^ENSG00000260404.3" ; ID "TLK2P1--AC110079.1^ENST00000567913.2" ; Parent "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; exon_id "ENSE00002625896.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; gene_name "AC110079.1" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000161164.4" ; havana_transcript "OTTHUMT00000364170.2" ; level 2 ; orig_coord_info "chr4,118591773,118591895,+" ; tag dotter_confirmed basic ; transcript_id "TLK2P1--AC110079.1^ENST00000567913.2" ; transcript_name "AC110079.1-201" ; transcript_support_level 5 ; transcript_type processed_transcript
636 cases fixed where L3 features have parent feature(s) missing
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check5: l1 linked to l2 ----------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check6: remove orphan l1 ---------------------------
We remove only those not supposed to be orphan
None found
------------------------------ done in 0 seconds -------------------------------
------------------------- Check7: all level3 locations -------------------------
------------------------------ done in 0 seconds -------------------------------
------------------------------ Check8: check cds -------------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
----------------------------- Check9: check exons ------------------------------
No exons created
No exons locations modified
No supernumerary exons removed
No level2 locations modified
------------------------------ done in 0 seconds -------------------------------
----------------------------- Check10: check utrs ------------------------------
1340 UTRs created that were missing
No UTRs locations modified
No supernumerary UTRs removed
------------------------------ done in 0 seconds -------------------------------
------------------------ Check11: all level2 locations -------------------------
No problem found
------------------------------ done in 1 seconds -------------------------------
------------------------ Check12: all level1 locations -------------------------
We fixed 37 wrong level1 location cases
------------------------------ done in 0 seconds -------------------------------
---------------------- Check13: remove identical isoforms ----------------------
None found
------------------------------ done in 0 seconds -------------------------------
------ End checks (done in 1 second) ------
GFF3 file parsed