Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ff/5d6fc876c16ba284d60eee2cd75675/1173_CRL_T1_RNA_SLD_01_A23T55JLT4_2.Aligned.sortedByCoord.out.bam
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/35/32286154799cc05c864c2f11558257/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/35/32286154799cc05c864c2f11558257/.command.run
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa.fai
==> STAGING COMPLETE (5 inputs)
Using GATK jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar
Running:
java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -Xmx60620M -XX:-UsePerfData -XX:ParallelGCThreads=2 -jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar MarkDuplicates --INPUT 1173_CRL_T1_RNA_SLD_01_A23T55JLT4_2.Aligned.sortedByCoord.out.bam --OUTPUT 1173_CRL_T1_RNA_SLD_01_A23T55JLT4_2.md.bam --METRICS_FILE 1173_CRL_T1_RNA_SLD_01_A23T55JLT4_2.md.bam.metrics --TMP_DIR . --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa -REMOVE_DUPLICATES false -VALIDATION_STRINGENCY LENIENT
08:41:34.651 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar!/com/intel/gkl/native/libgkl_compression.so
[Mon Jun 08 08:41:34 GMT 2026] MarkDuplicates --INPUT 1173_CRL_T1_RNA_SLD_01_A23T55JLT4_2.Aligned.sortedByCoord.out.bam --OUTPUT 1173_CRL_T1_RNA_SLD_01_A23T55JLT4_2.md.bam --METRICS_FILE 1173_CRL_T1_RNA_SLD_01_A23T55JLT4_2.md.bam.metrics --REMOVE_DUPLICATES false --TMP_DIR . --VALIDATION_STRINGENCY LENIENT --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --FLOW_MODE false --FLOW_QUALITY_SUM_STRATEGY false --USE_END_IN_UNPAIRED_READS false --USE_UNPAIRED_CLIPPED_END false --UNPAIRED_END_UNCERTAINTY 0 --FLOW_SKIP_FIRST_N_FLOWS 0 --FLOW_Q_IS_KNOWN_END false --FLOW_EFFECTIVE_QUALITY_THRESHOLD 15 --ADD_PG_TAG_TO_READS true --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX <optimized capture of last three ':' separated fields as numeric values> --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --VERBOSITY INFO --QUIET false --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Mon Jun 08 08:41:34 GMT 2026] Executing as ?@nf-3532286154799cc05c864c2f11558257-2704c-tbstn on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 17.0.3-internal+0-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:4.4.0.0
INFO 2026-06-08 08:41:34 MarkDuplicates Start of doWork freeMemory: 105827856; totalMemory: 134217728; maxMemory: 63585648640
INFO 2026-06-08 08:41:34 MarkDuplicates Reading input file and constructing read end information.
INFO 2026-06-08 08:41:34 MarkDuplicates Will retain up to 230382784 data points before spilling to disk.
INFO 2026-06-08 08:41:38 MarkDuplicates Read 1,000,000 records. Elapsed time: 00:00:02s. Time for last 1,000,000: 2s. Last read position: chr1:1,390,530
INFO 2026-06-08 08:41:38 MarkDuplicates Tracking 3847 as yet unmatched pairs. 130 records in RAM.
INFO 2026-06-08 08:41:41 MarkDuplicates Read 2,000,000 records. Elapsed time: 00:00:04s. Time for last 1,000,000: 2s. Last read position: chr1:6,090,391
INFO 2026-06-08 08:41:41 MarkDuplicates Tracking 7480 as yet unmatched pairs. 115 records in RAM.
INFO 2026-06-08 08:41:44 MarkDuplicates Read 3,000,000 records. Elapsed time: 00:00:07s. Time for last 1,000,000: 2s. Last read position: chr1:8,866,360
INFO 2026-06-08 08:41:44 MarkDuplicates Tracking 11433 as yet unmatched pairs. 692 records in RAM.
INFO 2026-06-08 08:41:46 MarkDuplicates Read 4,000,000 records. Elapsed time: 00:00:09s. Time for last 1,000,000: 2s. Last read position: chr1:11,285,844
INFO 2026-06-08 08:41:46 MarkDuplicates Tracking 14184 as yet unmatched pairs. 98 records in RAM.
INFO 2026-06-08 08:41:48 MarkDuplicates Read 5,000,000 records. Elapsed time: 00:00:12s. Time for last 1,000,000: 2s. Last read position: chr1:15,725,408
INFO 2026-06-08 08:41:48 MarkDuplicates Tracking 17773 as yet unmatched pairs. 215 records in RAM.
INFO 2026-06-08 08:41:51 MarkDuplicates Read 6,000,000 records. Elapsed time: 00:00:14s. Time for last 1,000,000: 2s. Last read position: chr1:19,156,410
INFO 2026-06-08 08:41:51 MarkDuplicates Tracking 20706 as yet unmatched pairs. 187 records in RAM.
INFO 2026-06-08 08:41:53 MarkDuplicates Read 7,000,000 records. Elapsed time: 00:00:17s. Time for last 1,000,000: 2s. Last read position: chr1:21,823,657
INFO 2026-06-08 08:41:53 MarkDuplicates Tracking 24117 as yet unmatched pairs. 324 records in RAM.
INFO 2026-06-08 08:41:55 MarkDuplicates Read 8,000,000 records. Elapsed time: 00:00:19s. Time for last 1,000,000: 2s. Last read position: chr1:22,638,969
INFO 2026-06-08 08:41:55 MarkDuplicates Tracking 30144 as yet unmatched pairs. 2636 records in RAM.
INFO 2026-06-08 08:41:57 MarkDuplicates Read 9,000,000 records. Elapsed time: 00:00:21s. Time for last 1,000,000: 1s. Last read position: chr1:22,660,955
INFO 2026-06-08 08:41:57 MarkDuplicates Tracking 32097 as yet unmatched pairs. 1265 records in RAM.
INFO 2026-06-08 08:42:00 MarkDuplicates Read 10,000,000 records. Elapsed time: 00:00:23s. Time for last 1,000,000: 2s. Last read position: chr1:24,902,172
INFO 2026-06-08 08:42:00 MarkDuplicates Tracking 33913 as yet unmatched pairs. 106 records in RAM.
INFO 2026-06-08 08:42:02 MarkDuplicates Read 11,000,000 records. Elapsed time: 00:00:25s. Time for last 1,000,000: 1s. Last read position: chr1:26,945,650
INFO 2026-06-08 08:42:02 MarkDuplicates Tracking 37366 as yet unmatched pairs. 193 records in RAM.
INFO 2026-06-08 08:42:04 MarkDuplicates Read 12,000,000 records. Elapsed time: 00:00:27s. Time for last 1,000,000: 1s. Last read position: chr1:28,743,335
INFO 2026-06-08 08:42:04 MarkDuplicates Tracking 40784 as yet unmatched pairs. 253 records in RAM.
INFO 2026-06-08 08:42:06 MarkDuplicates Read 13,000,000 records. Elapsed time: 00:00:29s. Time for last 1,000,000: 2s. Last read position: chr1:32,214,798
INFO 2026-06-08 08:42:06 MarkDuplicates Tracking 44002 as yet unmatched pairs. 144 records in RAM.
INFO 2026-06-08 08:42:08 MarkDuplicates Read 14,000,000 records. Elapsed time: 00:00:31s. Time for last 1,000,000: 1s. Last read position: chr1:35,460,329
INFO 2026-06-08 08:42:08 MarkDuplicates Tracking 47471 as yet unmatched pairs. 290 records in RAM.
INFO 2026-06-08 08:42:10 MarkDuplicates Read 15,000,000 records. Elapsed time: 00:00:33s. Time for last 1,000,000: 2s. Last read position: chr1:39,318,515
INFO 2026-06-08 08:42:10 MarkDuplicates Tracking 50778 as yet unmatched pairs. 319 records in RAM.
INFO 2026-06-08 08:42:12 MarkDuplicates Read 16,000,000 records. Elapsed time: 00:00:35s. Time for last 1,000,000: 2s. Last read position: chr1:41,028,700
INFO 2026-06-08 08:42:12 MarkDuplicates Tracking 53722 as yet unmatched pairs. 228 records in RAM.
INFO 2026-06-08 08:42:14 MarkDuplicates Read 17,000,000 records. Elapsed time: 00:00:38s. Time for last 1,000,000: 2s. Last read position: chr1:43,621,205
INFO 2026-06-08 08:42:14 MarkDuplicates Tracking 57555 as yet unmatched pairs. 561 records in RAM.
INFO 2026-06-08 08:42:16 MarkDuplicates Read 18,000,000 records. Elapsed time: 00:00:40s. Time for last 1,000,000: 2s. Last read position: chr1:46,285,750
INFO 2026-06-08 08:42:16 MarkDuplicates Tracking 61164 as yet unmatched pairs. 890 records in RAM.
INFO 2026-06-08 08:42:18 MarkDuplicates Read 19,000,000 records. Elapsed time: 00:00:42s. Time for last 1,000,000: 1s. Last read position: chr1:53,260,600
INFO 2026-06-08 08:42:18 MarkDuplicates Tracking 63685 as yet unmatched pairs. 190 records in RAM.
INFO 2026-06-08 08:42:20 MarkDuplicates Read 20,000,000 records. Elapsed time: 00:00:44s. Time for last 1,000,000: 1s. Last read position: chr1:64,777,746
INFO 2026-06-08 08:42:20 MarkDuplicates Tracking 66809 as yet unmatched pairs. 173 records in RAM.
INFO 2026-06-08 08:42:22 MarkDuplicates Read 21,000,000 records. Elapsed time: 00:00:45s. Time for last 1,000,000: 1s. Last read position: chr1:81,966,057
INFO 2026-06-08 08:42:22 MarkDuplicates Tracking 69815 as yet unmatched pairs. 228 records in RAM.
INFO 2026-06-08 08:42:24 MarkDuplicates Read 22,000,000 records. Elapsed time: 00:00:47s. Time for last 1,000,000: 2s. Last read position: chr1:92,768,554
INFO 2026-06-08 08:42:24 MarkDuplicates Tracking 72765 as yet unmatched pairs. 166 records in RAM.
INFO 2026-06-08 08:42:25 MarkDuplicates Read 23,000,000 records. Elapsed time: 00:00:49s. Time for last 1,000,000: 1s. Last read position: chr1:108,924,114
INFO 2026-06-08 08:42:25 MarkDuplicates Tracking 75557 as yet unmatched pairs. 227 records in RAM.
INFO 2026-06-08 08:42:27 MarkDuplicates Read 24,000,000 records. Elapsed time: 00:00:51s. Time for last 1,000,000: 1s. Last read position: chr1:111,499,997
INFO 2026-06-08 08:42:27 MarkDuplicates Tracking 78650 as yet unmatched pairs. 194 records in RAM.
INFO 2026-06-08 08:42:29 MarkDuplicates Read 25,000,000 records. Elapsed time: 00:00:52s. Time for last 1,000,000: 1s. Last read position: chr1:114,737,994
INFO 2026-06-08 08:42:29 MarkDuplicates Tracking 82541 as yet unmatched pairs. 1208 records in RAM.
INFO 2026-06-08 08:42:31 MarkDuplicates Read 26,000,000 records. Elapsed time: 00:00:55s. Time for last 1,000,000: 2s. Last read position: chr1:119,920,367
INFO 2026-06-08 08:42:31 MarkDuplicates Tracking 85588 as yet unmatched pairs. 1046 records in RAM.
INFO 2026-06-08 08:42:33 MarkDuplicates Read 27,000,000 records. Elapsed time: 00:00:57s. Time for last 1,000,000: 1s. Last read position: chr1:144,423,182
INFO 2026-06-08 08:42:33 MarkDuplicates Tracking 86761 as yet unmatched pairs. 177 records in RAM.
INFO 2026-06-08 08:42:34 MarkDuplicates Read 28,000,000 records. Elapsed time: 00:00:58s. Time for last 1,000,000: 1s. Last read position: chr1:146,376,878
INFO 2026-06-08 08:42:34 MarkDuplicates Tracking 88377 as yet unmatched pairs. 164 records in RAM.
INFO 2026-06-08 08:42:35 MarkDuplicates Read 29,000,000 records. Elapsed time: 00:00:59s. Time for last 1,000,000: 1s. Last read position: chr1:149,008,444
INFO 2026-06-08 08:42:35 MarkDuplicates Tracking 90075 as yet unmatched pairs. 201 records in RAM.
INFO 2026-06-08 08:42:37 MarkDuplicates Read 30,000,000 records. Elapsed time: 00:01:00s. Time for last 1,000,000: 1s. Last read position: chr1:149,886,263
INFO 2026-06-08 08:42:37 MarkDuplicates Tracking 92015 as yet unmatched pairs. 398 records in RAM.
INFO 2026-06-08 08:42:38 MarkDuplicates Read 31,000,000 records. Elapsed time: 00:01:02s. Time for last 1,000,000: 1s. Last read position: chr1:150,627,540
INFO 2026-06-08 08:42:38 MarkDuplicates Tracking 95534 as yet unmatched pairs. 771 records in RAM.
INFO 2026-06-08 08:42:40 MarkDuplicates Read 32,000,000 records. Elapsed time: 00:01:04s. Time for last 1,000,000: 1s. Last read position: chr1:151,581,001
INFO 2026-06-08 08:42:40 MarkDuplicates Tracking 98053 as yet unmatched pairs. 214 records in RAM.
INFO 2026-06-08 08:42:42 MarkDuplicates Read 33,000,000 records. Elapsed time: 00:01:06s. Time for last 1,000,000: 2s. Last read position: chr1:154,157,578
INFO 2026-06-08 08:42:42 MarkDuplicates Tracking 102738 as yet unmatched pairs. 1812 records in RAM.
INFO 2026-06-08 08:42:45 MarkDuplicates Read 34,000,000 records. Elapsed time: 00:01:09s. Time for last 1,000,000: 2s. Last read position: chr1:154,465,132
INFO 2026-06-08 08:42:45 MarkDuplicates Tracking 103937 as yet unmatched pairs. 231 records in RAM.
INFO 2026-06-08 08:42:47 MarkDuplicates Read 35,000,000 records. Elapsed time: 00:01:10s. Time for last 1,000,000: 1s. Last read position: chr1:155,187,356
INFO 2026-06-08 08:42:47 MarkDuplicates Tracking 109477 as yet unmatched pairs. 2520 records in RAM.
INFO 2026-06-08 08:42:48 MarkDuplicates Read 36,000,000 records. Elapsed time: 00:01:12s. Time for last 1,000,000: 1s. Last read position: chr1:155,378,331
INFO 2026-06-08 08:42:48 MarkDuplicates Tracking 109938 as yet unmatched pairs. 365 records in RAM.
INFO 2026-06-08 08:42:50 MarkDuplicates Read 37,000,000 records. Elapsed time: 00:01:13s. Time for last 1,000,000: 1s. Last read position: chr1:156,130,697
INFO 2026-06-08 08:42:50 MarkDuplicates Tracking 114316 as yet unmatched pairs. 1599 records in RAM.
INFO 2026-06-08 08:42:52 MarkDuplicates Read 38,000,000 records. Elapsed time: 00:01:15s. Time for last 1,000,000: 1s. Last read position: chr1:156,743,675
INFO 2026-06-08 08:42:52 MarkDuplicates Tracking 116522 as yet unmatched pairs. 436 records in RAM.
INFO 2026-06-08 08:42:53 MarkDuplicates Read 39,000,000 records. Elapsed time: 00:01:17s. Time for last 1,000,000: 1s. Last read position: chr1:160,352,052
INFO 2026-06-08 08:42:53 MarkDuplicates Tracking 119477 as yet unmatched pairs. 236 records in RAM.
INFO 2026-06-08 08:42:55 MarkDuplicates Read 40,000,000 records. Elapsed time: 00:01:19s. Time for last 1,000,000: 1s. Last read position: chr1:161,542,377
INFO 2026-06-08 08:42:55 MarkDuplicates Tracking 122899 as yet unmatched pairs. 719 records in RAM.
INFO 2026-06-08 08:42:56 MarkDuplicates Read 41,000,000 records. Elapsed time: 00:01:20s. Time for last 1,000,000: 1s. Last read position: chr1:167,918,245
INFO 2026-06-08 08:42:56 MarkDuplicates Tracking 125140 as yet unmatched pairs. 284 records in RAM.
INFO 2026-06-08 08:42:58 MarkDuplicates Read 42,000,000 records. Elapsed time: 00:01:22s. Time for last 1,000,000: 1s. Last read position: chr1:171,557,753
INFO 2026-06-08 08:42:58 MarkDuplicates Tracking 128413 as yet unmatched pairs. 587 records in RAM.
INFO 2026-06-08 08:43:02 MarkDuplicates Read 43,000,000 records. Elapsed time: 00:01:25s. Time for last 1,000,000: 3s. Last read position: chr1:179,850,963
INFO 2026-06-08 08:43:02 MarkDuplicates Tracking 131065 as yet unmatched pairs. 227 records in RAM.
INFO 2026-06-08 08:43:04 MarkDuplicates Read 44,000,000 records. Elapsed time: 00:01:27s. Time for last 1,000,000: 2s. Last read position: chr1:182,876,081
INFO 2026-06-08 08:43:04 MarkDuplicates Tracking 134542 as yet unmatched pairs. 342 records in RAM.
INFO 2026-06-08 08:43:05 MarkDuplicates Read 45,000,000 records. Elapsed time: 00:01:29s. Time for last 1,000,000: 1s. Last read position: chr1:184,795,153
INFO 2026-06-08 08:43:05 MarkDuplicates Tracking 137543 as yet unmatched pairs. 167 records in RAM.
INFO 2026-06-08 08:43:07 MarkDuplicates Read 46,000,000 records. Elapsed time: 00:01:31s. Time for last 1,000,000: 1s. Last read position: chr1:186,391,772
INFO 2026-06-08 08:43:07 MarkDuplicates Tracking 140116 as yet unmatched pairs. 141 records in RAM.
INFO 2026-06-08 08:43:09 MarkDuplicates Read 47,000,000 records. Elapsed time: 00:01:33s. Time for last 1,000,000: 2s. Last read position: chr1:201,468,636
INFO 2026-06-08 08:43:09 MarkDuplicates Tracking 143078 as yet unmatched pairs. 120 records in RAM.
INFO 2026-06-08 08:43:11 MarkDuplicates Read 48,000,000 records. Elapsed time: 00:01:34s. Time for last 1,000,000: 1s. Last read position: chr1:203,850,590
INFO 2026-06-08 08:43:11 MarkDuplicates Tracking 146820 as yet unmatched pairs. 814 records in RAM.
INFO 2026-06-08 08:43:12 MarkDuplicates Read 49,000,000 records. Elapsed time: 00:01:36s. Time for last 1,000,000: 1s. Last read position: chr1:206,098,081
INFO 2026-06-08 08:43:12 MarkDuplicates Tracking 149084 as yet unmatched pairs. 142 records in RAM.
INFO 2026-06-08 08:43:14 MarkDuplicates Read 50,000,000 records. Elapsed time: 00:01:38s. Time for last 1,000,000: 1s. Last read position: chr1:211,295,702
INFO 2026-06-08 08:43:14 MarkDuplicates Tracking 151751 as yet unmatched pairs. 170 records in RAM.
INFO 2026-06-08 08:43:16 MarkDuplicates Read 51,000,000 records. Elapsed time: 00:01:39s. Time for last 1,000,000: 1s. Last read position: chr1:222,628,140
INFO 2026-06-08 08:43:16 MarkDuplicates Tracking 154646 as yet unmatched pairs. 154 records in RAM.
INFO 2026-06-08 08:43:17 MarkDuplicates Read 52,000,000 records. Elapsed time: 00:01:41s. Time for last 1,000,000: 1s. Last read position: chr1:226,064,421
INFO 2026-06-08 08:43:17 MarkDuplicates Tracking 158228 as yet unmatched pairs. 878 records in RAM.
INFO 2026-06-08 08:43:19 MarkDuplicates Read 53,000,000 records. Elapsed time: 00:01:42s. Time for last 1,000,000: 1s. Last read position: chr1:228,457,437
INFO 2026-06-08 08:43:19 MarkDuplicates Tracking 161065 as yet unmatched pairs. 73 records in RAM.
INFO 2026-06-08 08:43:20 MarkDuplicates Read 54,000,000 records. Elapsed time: 00:01:44s. Time for last 1,000,000: 1s. Last read position: chr1:235,787,260
INFO 2026-06-08 08:43:20 MarkDuplicates Tracking 164622 as yet unmatched pairs. 132 records in RAM.
INFO 2026-06-08 08:43:22 MarkDuplicates Read 55,000,000 records. Elapsed time: 00:01:46s. Time for last 1,000,000: 1s. Last read position: chr1:245,698,206
INFO 2026-06-08 08:43:22 MarkDuplicates Tracking 167535 as yet unmatched pairs. 13 records in RAM.
INFO 2026-06-08 08:43:25 MarkDuplicates Read 56,000,000 records. Elapsed time: 00:01:49s. Time for last 1,000,000: 3s. Last read position: chr2:10,058,817
INFO 2026-06-08 08:43:25 MarkDuplicates Tracking 170712 as yet unmatched pairs. 165366 records in RAM.
INFO 2026-06-08 08:43:27 MarkDuplicates Read 57,000,000 records. Elapsed time: 00:01:51s. Time for last 1,000,000: 1s. Last read position: chr2:20,447,508
INFO 2026-06-08 08:43:27 MarkDuplicates Tracking 176549 as yet unmatched pairs. 171118 records in RAM.
INFO 2026-06-08 08:43:29 MarkDuplicates Read 58,000,000 records. Elapsed time: 00:01:53s. Time for last 1,000,000: 2s. Last read position: chr2:26,764,313
INFO 2026-06-08 08:43:29 MarkDuplicates Tracking 177079 as yet unmatched pairs. 171541 records in RAM.
INFO 2026-06-08 08:43:32 MarkDuplicates Read 59,000,000 records. Elapsed time: 00:01:55s. Time for last 1,000,000: 2s. Last read position: chr2:28,783,970
INFO 2026-06-08 08:43:32 MarkDuplicates Tracking 182352 as yet unmatched pairs. 176710 records in RAM.
INFO 2026-06-08 08:43:34 MarkDuplicates Read 60,000,000 records. Elapsed time: 00:01:58s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,255
INFO 2026-06-08 08:43:34 MarkDuplicates Tracking 279229 as yet unmatched pairs. 172172 records in RAM.
INFO 2026-06-08 08:43:35 MarkDuplicates Read 61,000,000 records. Elapsed time: 00:01:59s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,263
INFO 2026-06-08 08:43:35 MarkDuplicates Tracking 300170 as yet unmatched pairs. 171253 records in RAM.
INFO 2026-06-08 08:43:38 MarkDuplicates Read 62,000,000 records. Elapsed time: 00:02:01s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,264
INFO 2026-06-08 08:43:38 MarkDuplicates Tracking 961778 as yet unmatched pairs. 141640 records in RAM.
INFO 2026-06-08 08:43:39 MarkDuplicates Read 63,000,000 records. Elapsed time: 00:02:03s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,362
INFO 2026-06-08 08:43:39 MarkDuplicates Tracking 1505818 as yet unmatched pairs. 117937 records in RAM.
INFO 2026-06-08 08:43:41 MarkDuplicates Read 64,000,000 records. Elapsed time: 00:02:05s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,406
INFO 2026-06-08 08:43:41 MarkDuplicates Tracking 1614171 as yet unmatched pairs. 112710 records in RAM.
INFO 2026-06-08 08:43:42 MarkDuplicates Read 65,000,000 records. Elapsed time: 00:02:06s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,407
INFO 2026-06-08 08:43:42 MarkDuplicates Tracking 1631427 as yet unmatched pairs. 112010 records in RAM.
INFO 2026-06-08 08:43:44 MarkDuplicates Read 66,000,000 records. Elapsed time: 00:02:07s. Time for last 1,000,000: 1s. Last read position: chr2:38,569,897
INFO 2026-06-08 08:43:44 MarkDuplicates Tracking 1724884 as yet unmatched pairs. 106101 records in RAM.
INFO 2026-06-08 08:43:46 MarkDuplicates Read 67,000,000 records. Elapsed time: 00:02:09s. Time for last 1,000,000: 1s. Last read position: chr2:43,320,459
INFO 2026-06-08 08:43:46 MarkDuplicates Tracking 1721904 as yet unmatched pairs. 102968 records in RAM.
INFO 2026-06-08 08:43:48 MarkDuplicates Read 68,000,000 records. Elapsed time: 00:02:12s. Time for last 1,000,000: 2s. Last read position: chr2:47,162,518
INFO 2026-06-08 08:43:48 MarkDuplicates Tracking 1720877 as yet unmatched pairs. 101772 records in RAM.
INFO 2026-06-08 08:43:50 MarkDuplicates Read 69,000,000 records. Elapsed time: 00:02:14s. Time for last 1,000,000: 1s. Last read position: chr2:55,254,657
INFO 2026-06-08 08:43:50 MarkDuplicates Tracking 1715972 as yet unmatched pairs. 96754 records in RAM.
INFO 2026-06-08 08:43:52 MarkDuplicates Read 70,000,000 records. Elapsed time: 00:02:15s. Time for last 1,000,000: 1s. Last read position: chr2:63,594,513
INFO 2026-06-08 08:43:52 MarkDuplicates Tracking 1714289 as yet unmatched pairs. 94933 records in RAM.
INFO 2026-06-08 08:43:54 MarkDuplicates Read 71,000,000 records. Elapsed time: 00:02:17s. Time for last 1,000,000: 2s. Last read position: chr2:69,804,617
INFO 2026-06-08 08:43:54 MarkDuplicates Tracking 1711723 as yet unmatched pairs. 92223 records in RAM.
INFO 2026-06-08 08:43:56 MarkDuplicates Read 72,000,000 records. Elapsed time: 00:02:19s. Time for last 1,000,000: 1s. Last read position: chr2:73,080,757
INFO 2026-06-08 08:43:56 MarkDuplicates Tracking 1708014 as yet unmatched pairs. 88396 records in RAM.
INFO 2026-06-08 08:43:57 MarkDuplicates Read 73,000,000 records. Elapsed time: 00:02:21s. Time for last 1,000,000: 1s. Last read position: chr2:74,482,167
INFO 2026-06-08 08:43:57 MarkDuplicates Tracking 1704905 as yet unmatched pairs. 85183 records in RAM.
INFO 2026-06-08 08:43:59 MarkDuplicates Read 74,000,000 records. Elapsed time: 00:02:23s. Time for last 1,000,000: 1s. Last read position: chr2:85,621,517
INFO 2026-06-08 08:43:59 MarkDuplicates Tracking 1701982 as yet unmatched pairs. 82182 records in RAM.
INFO 2026-06-08 08:44:01 MarkDuplicates Read 75,000,000 records. Elapsed time: 00:02:24s. Time for last 1,000,000: 1s. Last read position: chr2:88,857,244
INFO 2026-06-08 08:44:01 MarkDuplicates Tracking 1701438 as yet unmatched pairs. 81534 records in RAM.
INFO 2026-06-08 08:44:02 MarkDuplicates Read 76,000,000 records. Elapsed time: 00:02:26s. Time for last 1,000,000: 1s. Last read position: chr2:96,144,832
INFO 2026-06-08 08:44:02 MarkDuplicates Tracking 1697684 as yet unmatched pairs. 77606 records in RAM.
INFO 2026-06-08 08:44:04 MarkDuplicates Read 77,000,000 records. Elapsed time: 00:02:27s. Time for last 1,000,000: 1s. Last read position: chr2:98,656,419
INFO 2026-06-08 08:44:04 MarkDuplicates Tracking 1694619 as yet unmatched pairs. 74403 records in RAM.
INFO 2026-06-08 08:44:06 MarkDuplicates Read 78,000,000 records. Elapsed time: 00:02:29s. Time for last 1,000,000: 1s. Last read position: chr2:105,881,333
INFO 2026-06-08 08:44:06 MarkDuplicates Tracking 1691650 as yet unmatched pairs. 71288 records in RAM.
INFO 2026-06-08 08:44:07 MarkDuplicates Read 79,000,000 records. Elapsed time: 00:02:30s. Time for last 1,000,000: 1s. Last read position: chr2:108,765,295
INFO 2026-06-08 08:44:07 MarkDuplicates Tracking 1690577 as yet unmatched pairs. 70141 records in RAM.
INFO 2026-06-08 08:44:09 MarkDuplicates Read 80,000,000 records. Elapsed time: 00:02:33s. Time for last 1,000,000: 2s. Last read position: chr2:110,454,891
INFO 2026-06-08 08:44:09 MarkDuplicates Tracking 1688686 as yet unmatched pairs. 68190 records in RAM.
INFO 2026-06-08 08:44:11 MarkDuplicates Read 81,000,000 records. Elapsed time: 00:02:34s. Time for last 1,000,000: 1s. Last read position: chr2:112,394,633
INFO 2026-06-08 08:44:11 MarkDuplicates Tracking 1687233 as yet unmatched pairs. 66658 records in RAM.
INFO 2026-06-08 08:44:13 MarkDuplicates Read 82,000,000 records. Elapsed time: 00:02:36s. Time for last 1,000,000: 1s. Last read position: chr2:113,218,104
INFO 2026-06-08 08:44:13 MarkDuplicates Tracking 1686894 as yet unmatched pairs. 66257 records in RAM.
INFO 2026-06-08 08:44:15 MarkDuplicates Read 83,000,000 records. Elapsed time: 00:02:38s. Time for last 1,000,000: 2s. Last read position: chr2:113,241,568
INFO 2026-06-08 08:44:15 MarkDuplicates Tracking 1684736 as yet unmatched pairs. 64027 records in RAM.
INFO 2026-06-08 08:44:17 MarkDuplicates Read 84,000,000 records. Elapsed time: 00:02:41s. Time for last 1,000,000: 2s. Last read position: chr2:113,750,443
INFO 2026-06-08 08:44:17 MarkDuplicates Tracking 1680233 as yet unmatched pairs. 59429 records in RAM.
INFO 2026-06-08 08:44:19 MarkDuplicates Read 85,000,000 records. Elapsed time: 00:02:42s. Time for last 1,000,000: 1s. Last read position: chr2:127,523,761
INFO 2026-06-08 08:44:19 MarkDuplicates Tracking 1676135 as yet unmatched pairs. 55149 records in RAM.
INFO 2026-06-08 08:44:20 MarkDuplicates Read 86,000,000 records. Elapsed time: 00:02:44s. Time for last 1,000,000: 1s. Last read position: chr2:130,372,441
INFO 2026-06-08 08:44:20 MarkDuplicates Tracking 1673490 as yet unmatched pairs. 52417 records in RAM.
INFO 2026-06-08 08:44:22 MarkDuplicates Read 87,000,000 records. Elapsed time: 00:02:46s. Time for last 1,000,000: 1s. Last read position: chr2:135,912,498
INFO 2026-06-08 08:44:22 MarkDuplicates Tracking 1671950 as yet unmatched pairs. 50756 records in RAM.
INFO 2026-06-08 08:44:24 MarkDuplicates Read 88,000,000 records. Elapsed time: 00:02:47s. Time for last 1,000,000: 1s. Last read position: chr2:152,639,969
INFO 2026-06-08 08:44:24 MarkDuplicates Tracking 1669168 as yet unmatched pairs. 47836 records in RAM.
INFO 2026-06-08 08:44:25 MarkDuplicates Read 89,000,000 records. Elapsed time: 00:02:49s. Time for last 1,000,000: 1s. Last read position: chr2:165,754,637
INFO 2026-06-08 08:44:25 MarkDuplicates Tracking 1666664 as yet unmatched pairs. 45162 records in RAM.
INFO 2026-06-08 08:44:27 MarkDuplicates Read 90,000,000 records. Elapsed time: 00:02:51s. Time for last 1,000,000: 1s. Last read position: chr2:174,571,774
INFO 2026-06-08 08:44:27 MarkDuplicates Tracking 1664453 as yet unmatched pairs. 42816 records in RAM.
INFO 2026-06-08 08:44:29 MarkDuplicates Read 91,000,000 records. Elapsed time: 00:02:52s. Time for last 1,000,000: 1s. Last read position: chr2:182,751,702
INFO 2026-06-08 08:44:29 MarkDuplicates Tracking 1661338 as yet unmatched pairs. 39617 records in RAM.
INFO 2026-06-08 08:44:31 MarkDuplicates Read 92,000,000 records. Elapsed time: 00:02:54s. Time for last 1,000,000: 1s. Last read position: chr2:190,927,367
INFO 2026-06-08 08:44:31 MarkDuplicates Tracking 1658471 as yet unmatched pairs. 36642 records in RAM.
INFO 2026-06-08 08:44:32 MarkDuplicates Read 93,000,000 records. Elapsed time: 00:02:56s. Time for last 1,000,000: 1s. Last read position: chr2:200,306,843
INFO 2026-06-08 08:44:32 MarkDuplicates Tracking 1655573 as yet unmatched pairs. 33597 records in RAM.
INFO 2026-06-08 08:44:34 MarkDuplicates Read 94,000,000 records. Elapsed time: 00:02:57s. Time for last 1,000,000: 1s. Last read position: chr2:203,867,995
INFO 2026-06-08 08:44:34 MarkDuplicates Tracking 1652976 as yet unmatched pairs. 30862 records in RAM.
INFO 2026-06-08 08:44:35 MarkDuplicates Read 95,000,000 records. Elapsed time: 00:02:59s. Time for last 1,000,000: 1s. Last read position: chr2:215,362,045
INFO 2026-06-08 08:44:35 MarkDuplicates Tracking 1652141 as yet unmatched pairs. 29931 records in RAM.
INFO 2026-06-08 08:44:37 MarkDuplicates Read 96,000,000 records. Elapsed time: 00:03:01s. Time for last 1,000,000: 1s. Last read position: chr2:215,376,547
INFO 2026-06-08 08:44:37 MarkDuplicates Tracking 1649943 as yet unmatched pairs. 27702 records in RAM.
INFO 2026-06-08 08:44:39 MarkDuplicates Read 97,000,000 records. Elapsed time: 00:03:03s. Time for last 1,000,000: 1s. Last read position: chr2:215,397,137
INFO 2026-06-08 08:44:39 MarkDuplicates Tracking 1650258 as yet unmatched pairs. 27969 records in RAM.
INFO 2026-06-08 08:44:41 MarkDuplicates Read 98,000,000 records. Elapsed time: 00:03:04s. Time for last 1,000,000: 1s. Last read position: chr2:215,422,101
INFO 2026-06-08 08:44:41 MarkDuplicates Tracking 1643418 as yet unmatched pairs. 21070 records in RAM.
INFO 2026-06-08 08:44:42 MarkDuplicates Read 99,000,000 records. Elapsed time: 00:03:06s. Time for last 1,000,000: 1s. Last read position: chr2:217,538,339
INFO 2026-06-08 08:44:42 MarkDuplicates Tracking 1638924 as yet unmatched pairs. 16481 records in RAM.
INFO 2026-06-08 08:44:44 MarkDuplicates Read 100,000,000 records. Elapsed time: 00:03:07s. Time for last 1,000,000: 1s. Last read position: chr2:219,222,666
INFO 2026-06-08 08:44:44 MarkDuplicates Tracking 1635927 as yet unmatched pairs. 13375 records in RAM.
INFO 2026-06-08 08:44:45 MarkDuplicates Read 101,000,000 records. Elapsed time: 00:03:09s. Time for last 1,000,000: 1s. Last read position: chr2:227,330,811
INFO 2026-06-08 08:44:45 MarkDuplicates Tracking 1632557 as yet unmatched pairs. 9875 records in RAM.
INFO 2026-06-08 08:44:47 MarkDuplicates Read 102,000,000 records. Elapsed time: 00:03:10s. Time for last 1,000,000: 1s. Last read position: chr2:231,711,390
INFO 2026-06-08 08:44:47 MarkDuplicates Tracking 1630177 as yet unmatched pairs. 7402 records in RAM.
INFO 2026-06-08 08:44:49 MarkDuplicates Read 103,000,000 records. Elapsed time: 00:03:12s. Time for last 1,000,000: 1s. Last read position: chr2:237,994,800
INFO 2026-06-08 08:44:49 MarkDuplicates Tracking 1626972 as yet unmatched pairs. 4061 records in RAM.
INFO 2026-06-08 08:44:50 MarkDuplicates Read 104,000,000 records. Elapsed time: 00:03:14s. Time for last 1,000,000: 1s. Last read position: chr2:241,501,511
INFO 2026-06-08 08:44:50 MarkDuplicates Tracking 1623734 as yet unmatched pairs. 717 records in RAM.
INFO 2026-06-08 08:44:53 MarkDuplicates Read 105,000,000 records. Elapsed time: 00:03:16s. Time for last 1,000,000: 2s. Last read position: chr3:9,672,731
INFO 2026-06-08 08:44:53 MarkDuplicates Tracking 1620549 as yet unmatched pairs. 93161 records in RAM.
INFO 2026-06-08 08:44:55 MarkDuplicates Read 106,000,000 records. Elapsed time: 00:03:18s. Time for last 1,000,000: 1s. Last read position: chr3:12,604,273
INFO 2026-06-08 08:44:55 MarkDuplicates Tracking 1618758 as yet unmatched pairs. 91266 records in RAM.
INFO 2026-06-08 08:44:56 MarkDuplicates Read 107,000,000 records. Elapsed time: 00:03:20s. Time for last 1,000,000: 1s. Last read position: chr3:15,262,216
INFO 2026-06-08 08:44:56 MarkDuplicates Tracking 1614283 as yet unmatched pairs. 86679 records in RAM.
INFO 2026-06-08 08:44:58 MarkDuplicates Read 108,000,000 records. Elapsed time: 00:03:22s. Time for last 1,000,000: 2s. Last read position: chr3:31,733,264
INFO 2026-06-08 08:44:58 MarkDuplicates Tracking 1611626 as yet unmatched pairs. 83837 records in RAM.
INFO 2026-06-08 08:45:01 MarkDuplicates Read 109,000,000 records. Elapsed time: 00:03:24s. Time for last 1,000,000: 2s. Last read position: chr3:39,185,352
INFO 2026-06-08 08:45:01 MarkDuplicates Tracking 1608522 as yet unmatched pairs. 80620 records in RAM.
INFO 2026-06-08 08:45:03 MarkDuplicates Read 110,000,000 records. Elapsed time: 00:03:27s. Time for last 1,000,000: 2s. Last read position: chr3:45,095,417
INFO 2026-06-08 08:45:03 MarkDuplicates Tracking 1605874 as yet unmatched pairs. 77865 records in RAM.
INFO 2026-06-08 08:45:05 MarkDuplicates Read 111,000,000 records. Elapsed time: 00:03:29s. Time for last 1,000,000: 1s. Last read position: chr3:47,420,696
INFO 2026-06-08 08:45:05 MarkDuplicates Tracking 1602716 as yet unmatched pairs. 74626 records in RAM.
INFO 2026-06-08 08:45:07 MarkDuplicates Read 112,000,000 records. Elapsed time: 00:03:31s. Time for last 1,000,000: 1s. Last read position: chr3:48,694,940
INFO 2026-06-08 08:45:07 MarkDuplicates Tracking 1599645 as yet unmatched pairs. 71468 records in RAM.
INFO 2026-06-08 08:45:09 MarkDuplicates Read 113,000,000 records. Elapsed time: 00:03:32s. Time for last 1,000,000: 1s. Last read position: chr3:49,417,592
INFO 2026-06-08 08:45:09 MarkDuplicates Tracking 1596323 as yet unmatched pairs. 68049 records in RAM.
INFO 2026-06-08 08:45:10 MarkDuplicates Read 114,000,000 records. Elapsed time: 00:03:34s. Time for last 1,000,000: 1s. Last read position: chr3:50,355,409
INFO 2026-06-08 08:45:10 MarkDuplicates Tracking 1592882 as yet unmatched pairs. 64514 records in RAM.
INFO 2026-06-08 08:45:12 MarkDuplicates Read 115,000,000 records. Elapsed time: 00:03:35s. Time for last 1,000,000: 1s. Last read position: chr3:52,514,154
INFO 2026-06-08 08:45:12 MarkDuplicates Tracking 1589773 as yet unmatched pairs. 61312 records in RAM.
INFO 2026-06-08 08:45:14 MarkDuplicates Read 116,000,000 records. Elapsed time: 00:03:37s. Time for last 1,000,000: 1s. Last read position: chr3:58,077,261
INFO 2026-06-08 08:45:14 MarkDuplicates Tracking 1587323 as yet unmatched pairs. 58746 records in RAM.
INFO 2026-06-08 08:45:15 MarkDuplicates Read 117,000,000 records. Elapsed time: 00:03:39s. Time for last 1,000,000: 1s. Last read position: chr3:67,529,179
INFO 2026-06-08 08:45:15 MarkDuplicates Tracking 1584171 as yet unmatched pairs. 55463 records in RAM.
INFO 2026-06-08 08:45:17 MarkDuplicates Read 118,000,000 records. Elapsed time: 00:03:41s. Time for last 1,000,000: 1s. Last read position: chr3:100,310,431
INFO 2026-06-08 08:45:17 MarkDuplicates Tracking 1581604 as yet unmatched pairs. 52790 records in RAM.
INFO 2026-06-08 08:45:19 MarkDuplicates Read 119,000,000 records. Elapsed time: 00:03:42s. Time for last 1,000,000: 1s. Last read position: chr3:105,704,161
INFO 2026-06-08 08:45:19 MarkDuplicates Tracking 1578969 as yet unmatched pairs. 50092 records in RAM.
INFO 2026-06-08 08:45:21 MarkDuplicates Read 120,000,000 records. Elapsed time: 00:03:45s. Time for last 1,000,000: 2s. Last read position: chr3:119,229,909
INFO 2026-06-08 08:45:21 MarkDuplicates Tracking 1576336 as yet unmatched pairs. 47280 records in RAM.
INFO 2026-06-08 08:45:23 MarkDuplicates Read 121,000,000 records. Elapsed time: 00:03:46s. Time for last 1,000,000: 1s. Last read position: chr3:121,844,340
INFO 2026-06-08 08:45:23 MarkDuplicates Tracking 1573418 as yet unmatched pairs. 44265 records in RAM.
INFO 2026-06-08 08:45:24 MarkDuplicates Read 122,000,000 records. Elapsed time: 00:03:48s. Time for last 1,000,000: 1s. Last read position: chr3:124,766,304
INFO 2026-06-08 08:45:24 MarkDuplicates Tracking 1570983 as yet unmatched pairs. 41749 records in RAM.
INFO 2026-06-08 08:45:26 MarkDuplicates Read 123,000,000 records. Elapsed time: 00:03:50s. Time for last 1,000,000: 1s. Last read position: chr3:128,064,925
INFO 2026-06-08 08:45:26 MarkDuplicates Tracking 1567424 as yet unmatched pairs. 38074 records in RAM.
INFO 2026-06-08 08:45:28 MarkDuplicates Read 124,000,000 records. Elapsed time: 00:03:51s. Time for last 1,000,000: 1s. Last read position: chr3:129,298,407
INFO 2026-06-08 08:45:28 MarkDuplicates Tracking 1564161 as yet unmatched pairs. 34713 records in RAM.
INFO 2026-06-08 08:45:29 MarkDuplicates Read 125,000,000 records. Elapsed time: 00:03:53s. Time for last 1,000,000: 1s. Last read position: chr3:133,584,065
INFO 2026-06-08 08:45:29 MarkDuplicates Tracking 1562039 as yet unmatched pairs. 32484 records in RAM.
INFO 2026-06-08 08:45:31 MarkDuplicates Read 126,000,000 records. Elapsed time: 00:03:54s. Time for last 1,000,000: 1s. Last read position: chr3:139,374,507
INFO 2026-06-08 08:45:31 MarkDuplicates Tracking 1558253 as yet unmatched pairs. 28587 records in RAM.
INFO 2026-06-08 08:45:33 MarkDuplicates Read 127,000,000 records. Elapsed time: 00:03:56s. Time for last 1,000,000: 1s. Last read position: chr3:149,177,876
INFO 2026-06-08 08:45:33 MarkDuplicates Tracking 1556190 as yet unmatched pairs. 26365 records in RAM.
INFO 2026-06-08 08:45:34 MarkDuplicates Read 128,000,000 records. Elapsed time: 00:03:58s. Time for last 1,000,000: 1s. Last read position: chr3:150,410,714
INFO 2026-06-08 08:45:34 MarkDuplicates Tracking 1552535 as yet unmatched pairs. 22622 records in RAM.
INFO 2026-06-08 08:45:36 MarkDuplicates Read 129,000,000 records. Elapsed time: 00:03:59s. Time for last 1,000,000: 1s. Last read position: chr3:160,401,945
INFO 2026-06-08 08:45:36 MarkDuplicates Tracking 1549561 as yet unmatched pairs. 19536 records in RAM.
INFO 2026-06-08 08:45:38 MarkDuplicates Read 130,000,000 records. Elapsed time: 00:04:01s. Time for last 1,000,000: 1s. Last read position: chr3:171,007,167
INFO 2026-06-08 08:45:38 MarkDuplicates Tracking 1547045 as yet unmatched pairs. 16855 records in RAM.
INFO 2026-06-08 08:45:40 MarkDuplicates Read 131,000,000 records. Elapsed time: 00:04:04s. Time for last 1,000,000: 2s. Last read position: chr3:180,957,848
INFO 2026-06-08 08:45:40 MarkDuplicates Tracking 1544806 as yet unmatched pairs. 14433 records in RAM.
INFO 2026-06-08 08:45:42 MarkDuplicates Read 132,000,000 records. Elapsed time: 00:04:06s. Time for last 1,000,000: 2s. Last read position: chr3:184,317,427
INFO 2026-06-08 08:45:42 MarkDuplicates Tracking 1541934 as yet unmatched pairs. 11480 records in RAM.
INFO 2026-06-08 08:45:44 MarkDuplicates Read 133,000,000 records. Elapsed time: 00:04:07s. Time for last 1,000,000: 1s. Last read position: chr3:186,786,266
INFO 2026-06-08 08:45:44 MarkDuplicates Tracking 1538896 as yet unmatched pairs. 8330 records in RAM.
INFO 2026-06-08 08:45:45 MarkDuplicates Read 134,000,000 records. Elapsed time: 00:04:09s. Time for last 1,000,000: 1s. Last read position: chr3:194,459,487
INFO 2026-06-08 08:45:45 MarkDuplicates Tracking 1536116 as yet unmatched pairs. 5436 records in RAM.
INFO 2026-06-08 08:45:46 MarkDuplicates Read 135,000,000 records. Elapsed time: 00:04:10s. Time for last 1,000,000: 1s. Last read position: chr3:195,785,593
INFO 2026-06-08 08:45:46 MarkDuplicates Tracking 1534845 as yet unmatched pairs. 4127 records in RAM.
INFO 2026-06-08 08:45:48 MarkDuplicates Read 136,000,000 records. Elapsed time: 00:04:12s. Time for last 1,000,000: 1s. Last read position: chr3:197,701,759
INFO 2026-06-08 08:45:48 MarkDuplicates Tracking 1531307 as yet unmatched pairs. 508 records in RAM.
INFO 2026-06-08 08:45:50 MarkDuplicates Read 137,000,000 records. Elapsed time: 00:04:14s. Time for last 1,000,000: 2s. Last read position: chr4:1,744,590
INFO 2026-06-08 08:45:50 MarkDuplicates Tracking 1528257 as yet unmatched pairs. 40057 records in RAM.
INFO 2026-06-08 08:45:52 MarkDuplicates Read 138,000,000 records. Elapsed time: 00:04:15s. Time for last 1,000,000: 1s. Last read position: chr4:3,948,079
INFO 2026-06-08 08:45:52 MarkDuplicates Tracking 1524578 as yet unmatched pairs. 36293 records in RAM.
INFO 2026-06-08 08:45:53 MarkDuplicates Read 139,000,000 records. Elapsed time: 00:04:17s. Time for last 1,000,000: 1s. Last read position: chr4:10,097,831
INFO 2026-06-08 08:45:53 MarkDuplicates Tracking 1521456 as yet unmatched pairs. 33048 records in RAM.
INFO 2026-06-08 08:45:55 MarkDuplicates Read 140,000,000 records. Elapsed time: 00:04:18s. Time for last 1,000,000: 1s. Last read position: chr4:25,669,802
INFO 2026-06-08 08:45:55 MarkDuplicates Tracking 1520265 as yet unmatched pairs. 31748 records in RAM.
INFO 2026-06-08 08:45:57 MarkDuplicates Read 141,000,000 records. Elapsed time: 00:04:20s. Time for last 1,000,000: 1s. Last read position: chr4:39,504,474
INFO 2026-06-08 08:45:57 MarkDuplicates Tracking 1516166 as yet unmatched pairs. 27515 records in RAM.
INFO 2026-06-08 08:45:58 MarkDuplicates Read 142,000,000 records. Elapsed time: 00:04:22s. Time for last 1,000,000: 1s. Last read position: chr4:54,229,390
INFO 2026-06-08 08:45:58 MarkDuplicates Tracking 1513064 as yet unmatched pairs. 24257 records in RAM.
INFO 2026-06-08 08:46:00 MarkDuplicates Read 143,000,000 records. Elapsed time: 00:04:23s. Time for last 1,000,000: 1s. Last read position: chr4:70,656,335
INFO 2026-06-08 08:46:00 MarkDuplicates Tracking 1511795 as yet unmatched pairs. 22884 records in RAM.
INFO 2026-06-08 08:46:02 MarkDuplicates Read 144,000,000 records. Elapsed time: 00:04:26s. Time for last 1,000,000: 2s. Last read position: chr4:76,002,932
INFO 2026-06-08 08:46:02 MarkDuplicates Tracking 1508833 as yet unmatched pairs. 19848 records in RAM.
INFO 2026-06-08 08:46:04 MarkDuplicates Read 145,000,000 records. Elapsed time: 00:04:28s. Time for last 1,000,000: 2s. Last read position: chr4:82,881,914
INFO 2026-06-08 08:46:04 MarkDuplicates Tracking 1504592 as yet unmatched pairs. 15530 records in RAM.
INFO 2026-06-08 08:46:06 MarkDuplicates Read 146,000,000 records. Elapsed time: 00:04:30s. Time for last 1,000,000: 1s. Last read position: chr4:94,276,336
INFO 2026-06-08 08:46:06 MarkDuplicates Tracking 1501957 as yet unmatched pairs. 12791 records in RAM.
INFO 2026-06-08 08:46:08 MarkDuplicates Read 147,000,000 records. Elapsed time: 00:04:32s. Time for last 1,000,000: 1s. Last read position: chr4:110,621,213
INFO 2026-06-08 08:46:08 MarkDuplicates Tracking 1499371 as yet unmatched pairs. 10057 records in RAM.
INFO 2026-06-08 08:46:09 MarkDuplicates Read 148,000,000 records. Elapsed time: 00:04:33s. Time for last 1,000,000: 1s. Last read position: chr4:139,060,360
INFO 2026-06-08 08:46:09 MarkDuplicates Tracking 1496935 as yet unmatched pairs. 7509 records in RAM.
INFO 2026-06-08 08:46:11 MarkDuplicates Read 149,000,000 records. Elapsed time: 00:04:35s. Time for last 1,000,000: 1s. Last read position: chr4:152,411,233
INFO 2026-06-08 08:46:11 MarkDuplicates Tracking 1494475 as yet unmatched pairs. 4929 records in RAM.
INFO 2026-06-08 08:46:13 MarkDuplicates Read 150,000,000 records. Elapsed time: 00:04:36s. Time for last 1,000,000: 1s. Last read position: chr4:182,688,215
INFO 2026-06-08 08:46:13 MarkDuplicates Tracking 1491705 as yet unmatched pairs. 1995 records in RAM.
INFO 2026-06-08 08:46:15 MarkDuplicates Read 151,000,000 records. Elapsed time: 00:04:38s. Time for last 1,000,000: 2s. Last read position: chr5:1,064,749
INFO 2026-06-08 08:46:15 MarkDuplicates Tracking 1488758 as yet unmatched pairs. 76042 records in RAM.
INFO 2026-06-08 08:46:17 MarkDuplicates Read 152,000,000 records. Elapsed time: 00:04:40s. Time for last 1,000,000: 1s. Last read position: chr5:14,290,926
INFO 2026-06-08 08:46:17 MarkDuplicates Tracking 1486197 as yet unmatched pairs. 73397 records in RAM.
INFO 2026-06-08 08:46:18 MarkDuplicates Read 153,000,000 records. Elapsed time: 00:04:42s. Time for last 1,000,000: 1s. Last read position: chr5:16,699,433
INFO 2026-06-08 08:46:18 MarkDuplicates Tracking 1482294 as yet unmatched pairs. 69405 records in RAM.
INFO 2026-06-08 08:46:20 MarkDuplicates Read 154,000,000 records. Elapsed time: 00:04:43s. Time for last 1,000,000: 1s. Last read position: chr5:34,945,792
INFO 2026-06-08 08:46:20 MarkDuplicates Tracking 1479634 as yet unmatched pairs. 66622 records in RAM.
INFO 2026-06-08 08:46:21 MarkDuplicates Read 155,000,000 records. Elapsed time: 00:04:45s. Time for last 1,000,000: 1s. Last read position: chr5:40,765,001
INFO 2026-06-08 08:46:21 MarkDuplicates Tracking 1477212 as yet unmatched pairs. 64126 records in RAM.
INFO 2026-06-08 08:46:23 MarkDuplicates Read 156,000,000 records. Elapsed time: 00:04:47s. Time for last 1,000,000: 1s. Last read position: chr5:60,647,414
INFO 2026-06-08 08:46:23 MarkDuplicates Tracking 1474327 as yet unmatched pairs. 61135 records in RAM.
INFO 2026-06-08 08:46:25 MarkDuplicates Read 157,000,000 records. Elapsed time: 00:04:48s. Time for last 1,000,000: 1s. Last read position: chr5:71,060,914
INFO 2026-06-08 08:46:25 MarkDuplicates Tracking 1472169 as yet unmatched pairs. 58866 records in RAM.
INFO 2026-06-08 08:46:26 MarkDuplicates Read 158,000,000 records. Elapsed time: 00:04:50s. Time for last 1,000,000: 1s. Last read position: chr5:77,708,301
INFO 2026-06-08 08:46:26 MarkDuplicates Tracking 1469683 as yet unmatched pairs. 56294 records in RAM.
INFO 2026-06-08 08:46:28 MarkDuplicates Read 159,000,000 records. Elapsed time: 00:04:52s. Time for last 1,000,000: 1s. Last read position: chr5:83,539,736
INFO 2026-06-08 08:46:28 MarkDuplicates Tracking 1467405 as yet unmatched pairs. 53922 records in RAM.
INFO 2026-06-08 08:46:29 MarkDuplicates Read 160,000,000 records. Elapsed time: 00:04:53s. Time for last 1,000,000: 1s. Last read position: chr5:98,856,497
INFO 2026-06-08 08:46:29 MarkDuplicates Tracking 1464373 as yet unmatched pairs. 50808 records in RAM.
INFO 2026-06-08 08:46:31 MarkDuplicates Read 161,000,000 records. Elapsed time: 00:04:55s. Time for last 1,000,000: 1s. Last read position: chr5:131,162,595
INFO 2026-06-08 08:46:31 MarkDuplicates Tracking 1461593 as yet unmatched pairs. 47858 records in RAM.
INFO 2026-06-08 08:46:33 MarkDuplicates Read 162,000,000 records. Elapsed time: 00:04:57s. Time for last 1,000,000: 1s. Last read position: chr5:134,741,177
INFO 2026-06-08 08:46:33 MarkDuplicates Tracking 1458437 as yet unmatched pairs. 44615 records in RAM.
INFO 2026-06-08 08:46:34 MarkDuplicates Read 163,000,000 records. Elapsed time: 00:04:58s. Time for last 1,000,000: 1s. Last read position: chr5:138,924,676
INFO 2026-06-08 08:46:34 MarkDuplicates Tracking 1456016 as yet unmatched pairs. 42096 records in RAM.
INFO 2026-06-08 08:46:36 MarkDuplicates Read 164,000,000 records. Elapsed time: 00:04:59s. Time for last 1,000,000: 1s. Last read position: chr5:141,410,423
INFO 2026-06-08 08:46:36 MarkDuplicates Tracking 1452717 as yet unmatched pairs. 38591 records in RAM.
INFO 2026-06-08 08:46:38 MarkDuplicates Read 165,000,000 records. Elapsed time: 00:05:02s. Time for last 1,000,000: 2s. Last read position: chr5:149,977,908
INFO 2026-06-08 08:46:38 MarkDuplicates Tracking 1450121 as yet unmatched pairs. 35917 records in RAM.
INFO 2026-06-08 08:46:40 MarkDuplicates Read 166,000,000 records. Elapsed time: 00:05:04s. Time for last 1,000,000: 2s. Last read position: chr5:150,402,208
INFO 2026-06-08 08:46:40 MarkDuplicates Tracking 1482647 as yet unmatched pairs. 68399 records in RAM.
INFO 2026-06-08 08:46:42 MarkDuplicates Read 167,000,000 records. Elapsed time: 00:05:05s. Time for last 1,000,000: 1s. Last read position: chr5:150,404,697
INFO 2026-06-08 08:46:42 MarkDuplicates Tracking 1454901 as yet unmatched pairs. 40607 records in RAM.
INFO 2026-06-08 08:46:43 MarkDuplicates Read 168,000,000 records. Elapsed time: 00:05:07s. Time for last 1,000,000: 1s. Last read position: chr5:150,406,274
INFO 2026-06-08 08:46:43 MarkDuplicates Tracking 1458944 as yet unmatched pairs. 44615 records in RAM.
INFO 2026-06-08 08:46:45 MarkDuplicates Read 169,000,000 records. Elapsed time: 00:05:09s. Time for last 1,000,000: 1s. Last read position: chr5:150,446,880
INFO 2026-06-08 08:46:45 MarkDuplicates Tracking 1437142 as yet unmatched pairs. 22780 records in RAM.
INFO 2026-06-08 08:46:47 MarkDuplicates Read 170,000,000 records. Elapsed time: 00:05:10s. Time for last 1,000,000: 1s. Last read position: chr5:154,793,610
INFO 2026-06-08 08:46:47 MarkDuplicates Tracking 1433030 as yet unmatched pairs. 18594 records in RAM.
INFO 2026-06-08 08:46:48 MarkDuplicates Read 171,000,000 records. Elapsed time: 00:05:12s. Time for last 1,000,000: 1s. Last read position: chr5:169,591,084
INFO 2026-06-08 08:46:48 MarkDuplicates Tracking 1430256 as yet unmatched pairs. 15736 records in RAM.
INFO 2026-06-08 08:46:50 MarkDuplicates Read 172,000,000 records. Elapsed time: 00:05:14s. Time for last 1,000,000: 1s. Last read position: chr5:171,400,175
INFO 2026-06-08 08:46:50 MarkDuplicates Tracking 1432041 as yet unmatched pairs. 17460 records in RAM.
INFO 2026-06-08 08:46:52 MarkDuplicates Read 173,000,000 records. Elapsed time: 00:05:16s. Time for last 1,000,000: 1s. Last read position: chr5:176,350,576
INFO 2026-06-08 08:46:52 MarkDuplicates Tracking 1425071 as yet unmatched pairs. 10393 records in RAM.
INFO 2026-06-08 08:46:53 MarkDuplicates Read 174,000,000 records. Elapsed time: 00:05:17s. Time for last 1,000,000: 1s. Last read position: chr5:177,631,742
INFO 2026-06-08 08:46:53 MarkDuplicates Tracking 1421795 as yet unmatched pairs. 7002 records in RAM.
INFO 2026-06-08 08:46:56 MarkDuplicates Read 175,000,000 records. Elapsed time: 00:05:19s. Time for last 1,000,000: 2s. Last read position: chr5:179,820,979
INFO 2026-06-08 08:46:56 MarkDuplicates Tracking 1420951 as yet unmatched pairs. 6092 records in RAM.
INFO 2026-06-08 08:46:57 MarkDuplicates Read 176,000,000 records. Elapsed time: 00:05:21s. Time for last 1,000,000: 1s. Last read position: chr5:181,238,153
INFO 2026-06-08 08:46:57 MarkDuplicates Tracking 1417207 as yet unmatched pairs. 2295 records in RAM.
INFO 2026-06-08 08:47:00 MarkDuplicates Read 177,000,000 records. Elapsed time: 00:05:24s. Time for last 1,000,000: 2s. Last read position: chr6:7,226,475
INFO 2026-06-08 08:47:00 MarkDuplicates Tracking 1413031 as yet unmatched pairs. 104349 records in RAM.
INFO 2026-06-08 08:47:02 MarkDuplicates Read 178,000,000 records. Elapsed time: 00:05:26s. Time for last 1,000,000: 1s. Last read position: chr6:7,585,295
INFO 2026-06-08 08:47:02 MarkDuplicates Tracking 1409256 as yet unmatched pairs. 100520 records in RAM.
INFO 2026-06-08 08:47:04 MarkDuplicates Read 179,000,000 records. Elapsed time: 00:05:28s. Time for last 1,000,000: 1s. Last read position: chr6:17,600,741
INFO 2026-06-08 08:47:04 MarkDuplicates Tracking 1406103 as yet unmatched pairs. 97211 records in RAM.
INFO 2026-06-08 08:47:06 MarkDuplicates Read 180,000,000 records. Elapsed time: 00:05:29s. Time for last 1,000,000: 1s. Last read position: chr6:26,055,949
INFO 2026-06-08 08:47:06 MarkDuplicates Tracking 1403293 as yet unmatched pairs. 94270 records in RAM.
INFO 2026-06-08 08:47:07 MarkDuplicates Read 181,000,000 records. Elapsed time: 00:05:31s. Time for last 1,000,000: 1s. Last read position: chr6:26,405,937
INFO 2026-06-08 08:47:07 MarkDuplicates Tracking 1399927 as yet unmatched pairs. 90858 records in RAM.
INFO 2026-06-08 08:47:09 MarkDuplicates Read 182,000,000 records. Elapsed time: 00:05:32s. Time for last 1,000,000: 1s. Last read position: chr6:28,153,189
INFO 2026-06-08 08:47:09 MarkDuplicates Tracking 1396664 as yet unmatched pairs. 87541 records in RAM.
INFO 2026-06-08 08:47:10 MarkDuplicates Read 183,000,000 records. Elapsed time: 00:05:34s. Time for last 1,000,000: 1s. Last read position: chr6:30,346,710
INFO 2026-06-08 08:47:10 MarkDuplicates Tracking 1394125 as yet unmatched pairs. 84960 records in RAM.
INFO 2026-06-08 08:47:12 MarkDuplicates Read 184,000,000 records. Elapsed time: 00:05:35s. Time for last 1,000,000: 1s. Last read position: chr6:30,892,169
INFO 2026-06-08 08:47:12 MarkDuplicates Tracking 1391231 as yet unmatched pairs. 82006 records in RAM.
INFO 2026-06-08 08:47:13 MarkDuplicates Read 185,000,000 records. Elapsed time: 00:05:37s. Time for last 1,000,000: 1s. Last read position: chr6:31,356,252
INFO 2026-06-08 08:47:13 MarkDuplicates Tracking 1390275 as yet unmatched pairs. 80991 records in RAM.
INFO 2026-06-08 08:47:15 MarkDuplicates Read 186,000,000 records. Elapsed time: 00:05:38s. Time for last 1,000,000: 1s. Last read position: chr6:31,647,790
INFO 2026-06-08 08:47:15 MarkDuplicates Tracking 1385871 as yet unmatched pairs. 76530 records in RAM.
INFO 2026-06-08 08:47:16 MarkDuplicates Read 187,000,000 records. Elapsed time: 00:05:40s. Time for last 1,000,000: 1s. Last read position: chr6:31,828,270
INFO 2026-06-08 08:47:16 MarkDuplicates Tracking 1383391 as yet unmatched pairs. 74019 records in RAM.
INFO 2026-06-08 08:47:18 MarkDuplicates Read 188,000,000 records. Elapsed time: 00:05:42s. Time for last 1,000,000: 1s. Last read position: chr6:31,979,432
INFO 2026-06-08 08:47:18 MarkDuplicates Tracking 1379834 as yet unmatched pairs. 70419 records in RAM.
INFO 2026-06-08 08:47:19 MarkDuplicates Read 189,000,000 records. Elapsed time: 00:05:43s. Time for last 1,000,000: 1s. Last read position: chr6:32,578,835
INFO 2026-06-08 08:47:19 MarkDuplicates Tracking 1378031 as yet unmatched pairs. 68550 records in RAM.
INFO 2026-06-08 08:47:21 MarkDuplicates Read 190,000,000 records. Elapsed time: 00:05:45s. Time for last 1,000,000: 1s. Last read position: chr6:33,068,662
INFO 2026-06-08 08:47:21 MarkDuplicates Tracking 1376181 as yet unmatched pairs. 66650 records in RAM.
INFO 2026-06-08 08:47:23 MarkDuplicates Read 191,000,000 records. Elapsed time: 00:05:47s. Time for last 1,000,000: 1s. Last read position: chr6:33,305,233
INFO 2026-06-08 08:47:23 MarkDuplicates Tracking 1372262 as yet unmatched pairs. 62678 records in RAM.
INFO 2026-06-08 08:47:24 MarkDuplicates Read 192,000,000 records. Elapsed time: 00:05:48s. Time for last 1,000,000: 1s. Last read position: chr6:33,694,965
INFO 2026-06-08 08:47:24 MarkDuplicates Tracking 1368163 as yet unmatched pairs. 58527 records in RAM.
INFO 2026-06-08 08:47:26 MarkDuplicates Read 193,000,000 records. Elapsed time: 00:05:49s. Time for last 1,000,000: 1s. Last read position: chr6:36,100,204
INFO 2026-06-08 08:47:26 MarkDuplicates Tracking 1365314 as yet unmatched pairs. 55582 records in RAM.
INFO 2026-06-08 08:47:28 MarkDuplicates Read 194,000,000 records. Elapsed time: 00:05:52s. Time for last 1,000,000: 2s. Last read position: chr6:41,907,241
INFO 2026-06-08 08:47:28 MarkDuplicates Tracking 1362043 as yet unmatched pairs. 52199 records in RAM.
INFO 2026-06-08 08:47:30 MarkDuplicates Read 195,000,000 records. Elapsed time: 00:05:54s. Time for last 1,000,000: 1s. Last read position: chr6:43,175,910
INFO 2026-06-08 08:47:30 MarkDuplicates Tracking 1358632 as yet unmatched pairs. 48697 records in RAM.
INFO 2026-06-08 08:47:32 MarkDuplicates Read 196,000,000 records. Elapsed time: 00:05:55s. Time for last 1,000,000: 1s. Last read position: chr6:44,248,693
INFO 2026-06-08 08:47:32 MarkDuplicates Tracking 1357689 as yet unmatched pairs. 47707 records in RAM.
INFO 2026-06-08 08:47:33 MarkDuplicates Read 197,000,000 records. Elapsed time: 00:05:57s. Time for last 1,000,000: 1s. Last read position: chr6:47,713,849
INFO 2026-06-08 08:47:33 MarkDuplicates Tracking 1352820 as yet unmatched pairs. 42737 records in RAM.
INFO 2026-06-08 08:47:35 MarkDuplicates Read 198,000,000 records. Elapsed time: 00:05:58s. Time for last 1,000,000: 1s. Last read position: chr6:56,634,186
INFO 2026-06-08 08:47:35 MarkDuplicates Tracking 1349973 as yet unmatched pairs. 39690 records in RAM.
INFO 2026-06-08 08:47:36 MarkDuplicates Read 199,000,000 records. Elapsed time: 00:06:00s. Time for last 1,000,000: 1s. Last read position: chr6:75,237,954
INFO 2026-06-08 08:47:36 MarkDuplicates Tracking 1347934 as yet unmatched pairs. 37489 records in RAM.
INFO 2026-06-08 08:47:38 MarkDuplicates Read 200,000,000 records. Elapsed time: 00:06:01s. Time for last 1,000,000: 1s. Last read position: chr6:87,259,100
INFO 2026-06-08 08:47:38 MarkDuplicates Tracking 1344855 as yet unmatched pairs. 34308 records in RAM.
INFO 2026-06-08 08:47:39 MarkDuplicates Read 201,000,000 records. Elapsed time: 00:06:03s. Time for last 1,000,000: 1s. Last read position: chr6:99,545,157
INFO 2026-06-08 08:47:39 MarkDuplicates Tracking 1342209 as yet unmatched pairs. 31586 records in RAM.
INFO 2026-06-08 08:47:41 MarkDuplicates Read 202,000,000 records. Elapsed time: 00:06:05s. Time for last 1,000,000: 1s. Last read position: chr6:109,738,407
INFO 2026-06-08 08:47:41 MarkDuplicates Tracking 1338965 as yet unmatched pairs. 28231 records in RAM.
INFO 2026-06-08 08:47:43 MarkDuplicates Read 203,000,000 records. Elapsed time: 00:06:06s. Time for last 1,000,000: 1s. Last read position: chr6:125,220,082
INFO 2026-06-08 08:47:43 MarkDuplicates Tracking 1336473 as yet unmatched pairs. 25612 records in RAM.
INFO 2026-06-08 08:47:44 MarkDuplicates Read 204,000,000 records. Elapsed time: 00:06:08s. Time for last 1,000,000: 1s. Last read position: chr6:135,194,356
INFO 2026-06-08 08:47:44 MarkDuplicates Tracking 1333645 as yet unmatched pairs. 22668 records in RAM.
INFO 2026-06-08 08:47:46 MarkDuplicates Read 205,000,000 records. Elapsed time: 00:06:09s. Time for last 1,000,000: 1s. Last read position: chr6:139,373,508
INFO 2026-06-08 08:47:46 MarkDuplicates Tracking 1330962 as yet unmatched pairs. 19909 records in RAM.
INFO 2026-06-08 08:47:47 MarkDuplicates Read 206,000,000 records. Elapsed time: 00:06:11s. Time for last 1,000,000: 1s. Last read position: chr6:148,544,053
INFO 2026-06-08 08:47:47 MarkDuplicates Tracking 1327902 as yet unmatched pairs. 16748 records in RAM.
INFO 2026-06-08 08:47:49 MarkDuplicates Read 207,000,000 records. Elapsed time: 00:06:13s. Time for last 1,000,000: 1s. Last read position: chr6:154,410,898
INFO 2026-06-08 08:47:49 MarkDuplicates Tracking 1324779 as yet unmatched pairs. 13544 records in RAM.
INFO 2026-06-08 08:47:50 MarkDuplicates Read 208,000,000 records. Elapsed time: 00:06:14s. Time for last 1,000,000: 1s. Last read position: chr6:158,769,332
INFO 2026-06-08 08:47:50 MarkDuplicates Tracking 1323260 as yet unmatched pairs. 11895 records in RAM.
INFO 2026-06-08 08:47:52 MarkDuplicates Read 209,000,000 records. Elapsed time: 00:06:15s. Time for last 1,000,000: 1s. Last read position: chr6:159,688,233
INFO 2026-06-08 08:47:52 MarkDuplicates Tracking 1320453 as yet unmatched pairs. 9048 records in RAM.
INFO 2026-06-08 08:47:53 MarkDuplicates Read 210,000,000 records. Elapsed time: 00:06:17s. Time for last 1,000,000: 1s. Last read position: chr6:163,566,733
INFO 2026-06-08 08:47:53 MarkDuplicates Tracking 1316557 as yet unmatched pairs. 5066 records in RAM.
INFO 2026-06-08 08:47:55 MarkDuplicates Read 211,000,000 records. Elapsed time: 00:06:19s. Time for last 1,000,000: 1s. Last read position: chr6:169,710,284
INFO 2026-06-08 08:47:55 MarkDuplicates Tracking 1312401 as yet unmatched pairs. 810 records in RAM.
INFO 2026-06-08 08:47:58 MarkDuplicates Read 212,000,000 records. Elapsed time: 00:06:21s. Time for last 1,000,000: 2s. Last read position: chr7:3,859,005
INFO 2026-06-08 08:47:58 MarkDuplicates Tracking 1308464 as yet unmatched pairs. 97404 records in RAM.
INFO 2026-06-08 08:47:59 MarkDuplicates Read 213,000,000 records. Elapsed time: 00:06:23s. Time for last 1,000,000: 1s. Last read position: chr7:5,528,453
INFO 2026-06-08 08:47:59 MarkDuplicates Tracking 1305585 as yet unmatched pairs. 94447 records in RAM.
INFO 2026-06-08 08:48:00 MarkDuplicates Read 214,000,000 records. Elapsed time: 00:06:24s. Time for last 1,000,000: 1s. Last read position: chr7:6,692,658
INFO 2026-06-08 08:48:00 MarkDuplicates Tracking 1302033 as yet unmatched pairs. 90852 records in RAM.
INFO 2026-06-08 08:48:02 MarkDuplicates Read 215,000,000 records. Elapsed time: 00:06:26s. Time for last 1,000,000: 1s. Last read position: chr7:23,300,915
INFO 2026-06-08 08:48:02 MarkDuplicates Tracking 1299416 as yet unmatched pairs. 88127 records in RAM.
INFO 2026-06-08 08:48:04 MarkDuplicates Read 216,000,000 records. Elapsed time: 00:06:28s. Time for last 1,000,000: 1s. Last read position: chr7:35,635,161
INFO 2026-06-08 08:48:04 MarkDuplicates Tracking 1296620 as yet unmatched pairs. 85223 records in RAM.
INFO 2026-06-08 08:48:06 MarkDuplicates Read 217,000,000 records. Elapsed time: 00:06:29s. Time for last 1,000,000: 1s. Last read position: chr7:44,106,549
INFO 2026-06-08 08:48:06 MarkDuplicates Tracking 1293769 as yet unmatched pairs. 82286 records in RAM.
INFO 2026-06-08 08:48:07 MarkDuplicates Read 218,000,000 records. Elapsed time: 00:06:31s. Time for last 1,000,000: 1s. Last read position: chr7:47,368,496
INFO 2026-06-08 08:48:07 MarkDuplicates Tracking 1290749 as yet unmatched pairs. 79172 records in RAM.
INFO 2026-06-08 08:48:09 MarkDuplicates Read 219,000,000 records. Elapsed time: 00:06:32s. Time for last 1,000,000: 1s. Last read position: chr7:66,805,259
INFO 2026-06-08 08:48:09 MarkDuplicates Tracking 1287433 as yet unmatched pairs. 75770 records in RAM.
INFO 2026-06-08 08:48:10 MarkDuplicates Read 220,000,000 records. Elapsed time: 00:06:34s. Time for last 1,000,000: 1s. Last read position: chr7:73,175,429
INFO 2026-06-08 08:48:10 MarkDuplicates Tracking 1285568 as yet unmatched pairs. 73818 records in RAM.
INFO 2026-06-08 08:48:12 MarkDuplicates Read 221,000,000 records. Elapsed time: 00:06:35s. Time for last 1,000,000: 1s. Last read position: chr7:73,700,400
INFO 2026-06-08 08:48:12 MarkDuplicates Tracking 1284055 as yet unmatched pairs. 72282 records in RAM.
INFO 2026-06-08 08:48:13 MarkDuplicates Read 222,000,000 records. Elapsed time: 00:06:37s. Time for last 1,000,000: 1s. Last read position: chr7:74,706,394
INFO 2026-06-08 08:48:13 MarkDuplicates Tracking 1282352 as yet unmatched pairs. 70522 records in RAM.
INFO 2026-06-08 08:48:15 MarkDuplicates Read 223,000,000 records. Elapsed time: 00:06:38s. Time for last 1,000,000: 1s. Last read position: chr7:75,209,501
INFO 2026-06-08 08:48:15 MarkDuplicates Tracking 1280483 as yet unmatched pairs. 68624 records in RAM.
INFO 2026-06-08 08:48:16 MarkDuplicates Read 224,000,000 records. Elapsed time: 00:06:40s. Time for last 1,000,000: 1s. Last read position: chr7:76,048,170
INFO 2026-06-08 08:48:16 MarkDuplicates Tracking 1277759 as yet unmatched pairs. 65868 records in RAM.
INFO 2026-06-08 08:48:18 MarkDuplicates Read 225,000,000 records. Elapsed time: 00:06:41s. Time for last 1,000,000: 1s. Last read position: chr7:77,626,739
INFO 2026-06-08 08:48:18 MarkDuplicates Tracking 1273923 as yet unmatched pairs. 61978 records in RAM.
INFO 2026-06-08 08:48:19 MarkDuplicates Read 226,000,000 records. Elapsed time: 00:06:43s. Time for last 1,000,000: 1s. Last read position: chr7:92,096,932
INFO 2026-06-08 08:48:19 MarkDuplicates Tracking 1271762 as yet unmatched pairs. 59751 records in RAM.
INFO 2026-06-08 08:48:21 MarkDuplicates Read 227,000,000 records. Elapsed time: 00:06:44s. Time for last 1,000,000: 1s. Last read position: chr7:95,587,055
INFO 2026-06-08 08:48:21 MarkDuplicates Tracking 1268585 as yet unmatched pairs. 56511 records in RAM.
INFO 2026-06-08 08:48:22 MarkDuplicates Read 228,000,000 records. Elapsed time: 00:06:46s. Time for last 1,000,000: 1s. Last read position: chr7:99,012,241
INFO 2026-06-08 08:48:22 MarkDuplicates Tracking 1265295 as yet unmatched pairs. 53137 records in RAM.
INFO 2026-06-08 08:48:24 MarkDuplicates Read 229,000,000 records. Elapsed time: 00:06:48s. Time for last 1,000,000: 1s. Last read position: chr7:100,160,866
INFO 2026-06-08 08:48:24 MarkDuplicates Tracking 1262041 as yet unmatched pairs. 49797 records in RAM.
INFO 2026-06-08 08:48:26 MarkDuplicates Read 230,000,000 records. Elapsed time: 00:06:49s. Time for last 1,000,000: 1s. Last read position: chr7:100,885,201
INFO 2026-06-08 08:48:26 MarkDuplicates Tracking 1258778 as yet unmatched pairs. 46465 records in RAM.
INFO 2026-06-08 08:48:27 MarkDuplicates Read 231,000,000 records. Elapsed time: 00:06:51s. Time for last 1,000,000: 1s. Last read position: chr7:102,178,553
INFO 2026-06-08 08:48:27 MarkDuplicates Tracking 1256602 as yet unmatched pairs. 44233 records in RAM.
INFO 2026-06-08 08:48:28 MarkDuplicates Read 232,000,000 records. Elapsed time: 00:06:52s. Time for last 1,000,000: 1s. Last read position: chr7:102,640,303
INFO 2026-06-08 08:48:28 MarkDuplicates Tracking 1254746 as yet unmatched pairs. 42332 records in RAM.
INFO 2026-06-08 08:48:30 MarkDuplicates Read 233,000,000 records. Elapsed time: 00:06:54s. Time for last 1,000,000: 1s. Last read position: chr7:106,868,782
INFO 2026-06-08 08:48:30 MarkDuplicates Tracking 1252213 as yet unmatched pairs. 39693 records in RAM.
INFO 2026-06-08 08:48:32 MarkDuplicates Read 234,000,000 records. Elapsed time: 00:06:55s. Time for last 1,000,000: 1s. Last read position: chr7:111,747,321
INFO 2026-06-08 08:48:32 MarkDuplicates Tracking 1249441 as yet unmatched pairs. 36817 records in RAM.
INFO 2026-06-08 08:48:33 MarkDuplicates Read 235,000,000 records. Elapsed time: 00:06:57s. Time for last 1,000,000: 1s. Last read position: chr7:122,113,671
INFO 2026-06-08 08:48:33 MarkDuplicates Tracking 1246670 as yet unmatched pairs. 33973 records in RAM.
INFO 2026-06-08 08:48:35 MarkDuplicates Read 236,000,000 records. Elapsed time: 00:06:58s. Time for last 1,000,000: 1s. Last read position: chr7:127,844,334
INFO 2026-06-08 08:48:35 MarkDuplicates Tracking 1245467 as yet unmatched pairs. 32743 records in RAM.
INFO 2026-06-08 08:48:37 MarkDuplicates Read 237,000,000 records. Elapsed time: 00:07:00s. Time for last 1,000,000: 1s. Last read position: chr7:128,865,447
INFO 2026-06-08 08:48:37 MarkDuplicates Tracking 1240995 as yet unmatched pairs. 28215 records in RAM.
INFO 2026-06-08 08:48:38 MarkDuplicates Read 238,000,000 records. Elapsed time: 00:07:02s. Time for last 1,000,000: 1s. Last read position: chr7:134,661,735
INFO 2026-06-08 08:48:38 MarkDuplicates Tracking 1238201 as yet unmatched pairs. 25249 records in RAM.
INFO 2026-06-08 08:48:40 MarkDuplicates Read 239,000,000 records. Elapsed time: 00:07:03s. Time for last 1,000,000: 1s. Last read position: chr7:137,908,390
INFO 2026-06-08 08:48:40 MarkDuplicates Tracking 1236713 as yet unmatched pairs. 23707 records in RAM.
INFO 2026-06-08 08:48:42 MarkDuplicates Read 240,000,000 records. Elapsed time: 00:07:05s. Time for last 1,000,000: 1s. Last read position: chr7:139,573,113
INFO 2026-06-08 08:48:42 MarkDuplicates Tracking 1232656 as yet unmatched pairs. 19580 records in RAM.
INFO 2026-06-08 08:48:43 MarkDuplicates Read 241,000,000 records. Elapsed time: 00:07:07s. Time for last 1,000,000: 1s. Last read position: chr7:142,801,340
INFO 2026-06-08 08:48:43 MarkDuplicates Tracking 1229587 as yet unmatched pairs. 16450 records in RAM.
INFO 2026-06-08 08:48:45 MarkDuplicates Read 242,000,000 records. Elapsed time: 00:07:08s. Time for last 1,000,000: 1s. Last read position: chr7:144,277,225
INFO 2026-06-08 08:48:45 MarkDuplicates Tracking 1227456 as yet unmatched pairs. 14284 records in RAM.
INFO 2026-06-08 08:48:46 MarkDuplicates Read 243,000,000 records. Elapsed time: 00:07:09s. Time for last 1,000,000: 1s. Last read position: chr7:144,367,125
INFO 2026-06-08 08:48:46 MarkDuplicates Tracking 1225891 as yet unmatched pairs. 12693 records in RAM.
INFO 2026-06-08 08:48:48 MarkDuplicates Read 244,000,000 records. Elapsed time: 00:07:11s. Time for last 1,000,000: 1s. Last read position: chr7:150,625,880
INFO 2026-06-08 08:48:48 MarkDuplicates Tracking 1222710 as yet unmatched pairs. 9450 records in RAM.
INFO 2026-06-08 08:48:49 MarkDuplicates Read 245,000,000 records. Elapsed time: 00:07:13s. Time for last 1,000,000: 1s. Last read position: chr7:151,138,143
INFO 2026-06-08 08:48:49 MarkDuplicates Tracking 1219280 as yet unmatched pairs. 5975 records in RAM.
INFO 2026-06-08 08:48:51 MarkDuplicates Read 246,000,000 records. Elapsed time: 00:07:14s. Time for last 1,000,000: 1s. Last read position: chr7:152,248,469
INFO 2026-06-08 08:48:51 MarkDuplicates Tracking 1217211 as yet unmatched pairs. 3850 records in RAM.
INFO 2026-06-08 08:48:53 MarkDuplicates Read 247,000,000 records. Elapsed time: 00:07:17s. Time for last 1,000,000: 2s. Last read position: chr8:1,771,532
INFO 2026-06-08 08:48:53 MarkDuplicates Tracking 1213347 as yet unmatched pairs. 83177 records in RAM.
INFO 2026-06-08 08:48:55 MarkDuplicates Read 248,000,000 records. Elapsed time: 00:07:18s. Time for last 1,000,000: 1s. Last read position: chr8:11,850,901
INFO 2026-06-08 08:48:55 MarkDuplicates Tracking 1211798 as yet unmatched pairs. 81568 records in RAM.
INFO 2026-06-08 08:48:57 MarkDuplicates Read 249,000,000 records. Elapsed time: 00:07:20s. Time for last 1,000,000: 2s. Last read position: chr8:22,080,200
INFO 2026-06-08 08:48:57 MarkDuplicates Tracking 1207221 as yet unmatched pairs. 76928 records in RAM.
INFO 2026-06-08 08:48:59 MarkDuplicates Read 250,000,000 records. Elapsed time: 00:07:23s. Time for last 1,000,000: 2s. Last read position: chr8:25,389,194
INFO 2026-06-08 08:48:59 MarkDuplicates Tracking 1203745 as yet unmatched pairs. 73389 records in RAM.
INFO 2026-06-08 08:49:01 MarkDuplicates Read 251,000,000 records. Elapsed time: 00:07:24s. Time for last 1,000,000: 1s. Last read position: chr8:30,689,160
INFO 2026-06-08 08:49:01 MarkDuplicates Tracking 1200740 as yet unmatched pairs. 70266 records in RAM.
INFO 2026-06-08 08:49:03 MarkDuplicates Read 252,000,000 records. Elapsed time: 00:07:26s. Time for last 1,000,000: 1s. Last read position: chr8:38,428,352
INFO 2026-06-08 08:49:03 MarkDuplicates Tracking 1198255 as yet unmatched pairs. 67753 records in RAM.
INFO 2026-06-08 08:49:04 MarkDuplicates Read 253,000,000 records. Elapsed time: 00:07:28s. Time for last 1,000,000: 1s. Last read position: chr8:41,933,888
INFO 2026-06-08 08:49:04 MarkDuplicates Tracking 1195029 as yet unmatched pairs. 64484 records in RAM.
INFO 2026-06-08 08:50:13 MarkDuplicates Read 254,000,000 records. Elapsed time: 00:08:36s. Time for last 1,000,000: 68s. Last read position: chr8:42,997,569
INFO 2026-06-08 08:50:13 MarkDuplicates Tracking 1192784 as yet unmatched pairs. 62146 records in RAM.
INFO 2026-06-08 08:50:15 MarkDuplicates Read 255,000,000 records. Elapsed time: 00:08:38s. Time for last 1,000,000: 1s. Last read position: chr8:47,836,416
INFO 2026-06-08 08:50:15 MarkDuplicates Tracking 1189066 as yet unmatched pairs. 58309 records in RAM.
INFO 2026-06-08 08:50:16 MarkDuplicates Read 256,000,000 records. Elapsed time: 00:08:40s. Time for last 1,000,000: 1s. Last read position: chr8:56,073,138
INFO 2026-06-08 08:50:16 MarkDuplicates Tracking 1192807 as yet unmatched pairs. 61970 records in RAM.
INFO 2026-06-08 08:50:18 MarkDuplicates Read 257,000,000 records. Elapsed time: 00:08:42s. Time for last 1,000,000: 1s. Last read position: chr8:65,727,247
INFO 2026-06-08 08:50:18 MarkDuplicates Tracking 1182939 as yet unmatched pairs. 52032 records in RAM.
INFO 2026-06-08 08:50:20 MarkDuplicates Read 258,000,000 records. Elapsed time: 00:08:44s. Time for last 1,000,000: 2s. Last read position: chr8:70,162,714
INFO 2026-06-08 08:50:20 MarkDuplicates Tracking 1180505 as yet unmatched pairs. 49528 records in RAM.
INFO 2026-06-08 08:50:22 MarkDuplicates Read 259,000,000 records. Elapsed time: 00:08:46s. Time for last 1,000,000: 1s. Last read position: chr8:76,929,168
INFO 2026-06-08 08:50:22 MarkDuplicates Tracking 1177378 as yet unmatched pairs. 46304 records in RAM.
INFO 2026-06-08 08:50:23 MarkDuplicates Read 260,000,000 records. Elapsed time: 00:08:47s. Time for last 1,000,000: 1s. Last read position: chr8:94,514,895
INFO 2026-06-08 08:50:23 MarkDuplicates Tracking 1174666 as yet unmatched pairs. 43480 records in RAM.
INFO 2026-06-08 08:50:25 MarkDuplicates Read 261,000,000 records. Elapsed time: 00:08:49s. Time for last 1,000,000: 1s. Last read position: chr8:99,766,924
INFO 2026-06-08 08:50:25 MarkDuplicates Tracking 1171888 as yet unmatched pairs. 40616 records in RAM.
INFO 2026-06-08 08:50:27 MarkDuplicates Read 262,000,000 records. Elapsed time: 00:08:50s. Time for last 1,000,000: 1s. Last read position: chr8:101,543,271
INFO 2026-06-08 08:50:27 MarkDuplicates Tracking 1168911 as yet unmatched pairs. 37584 records in RAM.
INFO 2026-06-08 08:50:28 MarkDuplicates Read 263,000,000 records. Elapsed time: 00:08:52s. Time for last 1,000,000: 1s. Last read position: chr8:116,657,298
INFO 2026-06-08 08:50:28 MarkDuplicates Tracking 1166366 as yet unmatched pairs. 34947 records in RAM.
INFO 2026-06-08 08:50:31 MarkDuplicates Read 264,000,000 records. Elapsed time: 00:08:54s. Time for last 1,000,000: 2s. Last read position: chr8:124,999,509
INFO 2026-06-08 08:50:31 MarkDuplicates Tracking 1163417 as yet unmatched pairs. 31931 records in RAM.
INFO 2026-06-08 08:50:32 MarkDuplicates Read 265,000,000 records. Elapsed time: 00:08:56s. Time for last 1,000,000: 1s. Last read position: chr8:132,625,417
INFO 2026-06-08 08:50:32 MarkDuplicates Tracking 1159906 as yet unmatched pairs. 28324 records in RAM.
INFO 2026-06-08 08:50:34 MarkDuplicates Read 266,000,000 records. Elapsed time: 00:08:58s. Time for last 1,000,000: 1s. Last read position: chr8:140,789,473
INFO 2026-06-08 08:50:34 MarkDuplicates Tracking 1157304 as yet unmatched pairs. 25614 records in RAM.
INFO 2026-06-08 08:50:36 MarkDuplicates Read 267,000,000 records. Elapsed time: 00:09:00s. Time for last 1,000,000: 2s. Last read position: chr8:143,580,697
INFO 2026-06-08 08:50:36 MarkDuplicates Tracking 1154548 as yet unmatched pairs. 22776 records in RAM.
INFO 2026-06-08 08:50:39 MarkDuplicates Read 268,000,000 records. Elapsed time: 00:09:02s. Time for last 1,000,000: 2s. Last read position: chr8:143,858,431
INFO 2026-06-08 08:50:39 MarkDuplicates Tracking 1149695 as yet unmatched pairs. 17862 records in RAM.
INFO 2026-06-08 08:50:40 MarkDuplicates Read 269,000,000 records. Elapsed time: 00:09:04s. Time for last 1,000,000: 1s. Last read position: chr8:143,864,482
INFO 2026-06-08 08:50:40 MarkDuplicates Tracking 1148258 as yet unmatched pairs. 16401 records in RAM.
INFO 2026-06-08 08:50:42 MarkDuplicates Read 270,000,000 records. Elapsed time: 00:09:05s. Time for last 1,000,000: 1s. Last read position: chr8:143,918,885
INFO 2026-06-08 08:50:42 MarkDuplicates Tracking 1146135 as yet unmatched pairs. 14258 records in RAM.
INFO 2026-06-08 08:50:43 MarkDuplicates Read 271,000,000 records. Elapsed time: 00:09:07s. Time for last 1,000,000: 1s. Last read position: chr8:143,929,656
INFO 2026-06-08 08:50:43 MarkDuplicates Tracking 1141442 as yet unmatched pairs. 9522 records in RAM.
INFO 2026-06-08 08:50:45 MarkDuplicates Read 272,000,000 records. Elapsed time: 00:09:08s. Time for last 1,000,000: 1s. Last read position: chr8:144,115,597
INFO 2026-06-08 08:50:45 MarkDuplicates Tracking 1136972 as yet unmatched pairs. 4994 records in RAM.
INFO 2026-06-08 08:50:46 MarkDuplicates Read 273,000,000 records. Elapsed time: 00:09:10s. Time for last 1,000,000: 1s. Last read position: chr8:144,789,817
INFO 2026-06-08 08:50:46 MarkDuplicates Tracking 1133593 as yet unmatched pairs. 1548 records in RAM.
INFO 2026-06-08 08:50:48 MarkDuplicates Read 274,000,000 records. Elapsed time: 00:09:12s. Time for last 1,000,000: 2s. Last read position: chr9:4,741,002
INFO 2026-06-08 08:50:48 MarkDuplicates Tracking 1129953 as yet unmatched pairs. 56542 records in RAM.
INFO 2026-06-08 08:50:50 MarkDuplicates Read 275,000,000 records. Elapsed time: 00:09:14s. Time for last 1,000,000: 1s. Last read position: chr9:21,968,135
INFO 2026-06-08 08:50:50 MarkDuplicates Tracking 1127211 as yet unmatched pairs. 53680 records in RAM.
INFO 2026-06-08 08:50:52 MarkDuplicates Read 276,000,000 records. Elapsed time: 00:09:15s. Time for last 1,000,000: 1s. Last read position: chr9:34,635,769
INFO 2026-06-08 08:50:52 MarkDuplicates Tracking 1124109 as yet unmatched pairs. 50510 records in RAM.
INFO 2026-06-08 08:50:53 MarkDuplicates Read 277,000,000 records. Elapsed time: 00:09:17s. Time for last 1,000,000: 1s. Last read position: chr9:36,352,775
INFO 2026-06-08 08:50:53 MarkDuplicates Tracking 1120796 as yet unmatched pairs. 47108 records in RAM.
INFO 2026-06-08 08:50:55 MarkDuplicates Read 278,000,000 records. Elapsed time: 00:09:19s. Time for last 1,000,000: 1s. Last read position: chr9:76,503,203
INFO 2026-06-08 08:50:55 MarkDuplicates Tracking 1118226 as yet unmatched pairs. 44458 records in RAM.
INFO 2026-06-08 08:50:56 MarkDuplicates Read 279,000,000 records. Elapsed time: 00:09:20s. Time for last 1,000,000: 1s. Last read position: chr9:87,643,337
INFO 2026-06-08 08:50:56 MarkDuplicates Tracking 1115599 as yet unmatched pairs. 41731 records in RAM.
INFO 2026-06-08 08:50:58 MarkDuplicates Read 280,000,000 records. Elapsed time: 00:09:22s. Time for last 1,000,000: 1s. Last read position: chr9:93,288,919
INFO 2026-06-08 08:50:58 MarkDuplicates Tracking 1112247 as yet unmatched pairs. 38269 records in RAM.
INFO 2026-06-08 08:51:00 MarkDuplicates Read 281,000,000 records. Elapsed time: 00:09:23s. Time for last 1,000,000: 1s. Last read position: chr9:99,847,602
INFO 2026-06-08 08:51:00 MarkDuplicates Tracking 1109131 as yet unmatched pairs. 35060 records in RAM.
INFO 2026-06-08 08:51:01 MarkDuplicates Read 282,000,000 records. Elapsed time: 00:09:25s. Time for last 1,000,000: 1s. Last read position: chr9:111,425,420
INFO 2026-06-08 08:51:01 MarkDuplicates Tracking 1106441 as yet unmatched pairs. 32288 records in RAM.
INFO 2026-06-08 08:51:03 MarkDuplicates Read 283,000,000 records. Elapsed time: 00:09:27s. Time for last 1,000,000: 1s. Last read position: chr9:114,361,709
INFO 2026-06-08 08:51:03 MarkDuplicates Tracking 1103459 as yet unmatched pairs. 29236 records in RAM.
INFO 2026-06-08 08:51:05 MarkDuplicates Read 284,000,000 records. Elapsed time: 00:09:28s. Time for last 1,000,000: 1s. Last read position: chr9:122,855,773
INFO 2026-06-08 08:51:05 MarkDuplicates Tracking 1100071 as yet unmatched pairs. 25777 records in RAM.
INFO 2026-06-08 08:51:06 MarkDuplicates Read 285,000,000 records. Elapsed time: 00:09:30s. Time for last 1,000,000: 1s. Last read position: chr9:127,506,889
INFO 2026-06-08 08:51:06 MarkDuplicates Tracking 1097347 as yet unmatched pairs. 22965 records in RAM.
INFO 2026-06-08 08:51:08 MarkDuplicates Read 286,000,000 records. Elapsed time: 00:09:31s. Time for last 1,000,000: 1s. Last read position: chr9:128,605,354
INFO 2026-06-08 08:51:08 MarkDuplicates Tracking 1093733 as yet unmatched pairs. 19315 records in RAM.
INFO 2026-06-08 08:51:09 MarkDuplicates Read 287,000,000 records. Elapsed time: 00:09:33s. Time for last 1,000,000: 1s. Last read position: chr9:130,458,533
INFO 2026-06-08 08:51:09 MarkDuplicates Tracking 1090471 as yet unmatched pairs. 16011 records in RAM.
INFO 2026-06-08 08:51:11 MarkDuplicates Read 288,000,000 records. Elapsed time: 00:09:35s. Time for last 1,000,000: 2s. Last read position: chr9:131,605,000
INFO 2026-06-08 08:51:11 MarkDuplicates Tracking 1087360 as yet unmatched pairs. 12835 records in RAM.
INFO 2026-06-08 08:51:13 MarkDuplicates Read 289,000,000 records. Elapsed time: 00:09:37s. Time for last 1,000,000: 1s. Last read position: chr9:134,048,343
INFO 2026-06-08 08:51:13 MarkDuplicates Tracking 1084365 as yet unmatched pairs. 9759 records in RAM.
INFO 2026-06-08 08:51:14 MarkDuplicates Read 290,000,000 records. Elapsed time: 00:09:38s. Time for last 1,000,000: 1s. Last read position: chr9:136,477,067
INFO 2026-06-08 08:51:14 MarkDuplicates Tracking 1081803 as yet unmatched pairs. 7137 records in RAM.
INFO 2026-06-08 08:51:16 MarkDuplicates Read 291,000,000 records. Elapsed time: 00:09:40s. Time for last 1,000,000: 1s. Last read position: chr9:137,187,621
INFO 2026-06-08 08:51:16 MarkDuplicates Tracking 1076877 as yet unmatched pairs. 2171 records in RAM.
INFO 2026-06-08 08:51:18 MarkDuplicates Read 292,000,000 records. Elapsed time: 00:09:42s. Time for last 1,000,000: 2s. Last read position: chr10:3,780,141
INFO 2026-06-08 08:51:18 MarkDuplicates Tracking 1073721 as yet unmatched pairs. 65746 records in RAM.
INFO 2026-06-08 08:51:20 MarkDuplicates Read 293,000,000 records. Elapsed time: 00:09:44s. Time for last 1,000,000: 1s. Last read position: chr10:12,097,771
INFO 2026-06-08 08:51:20 MarkDuplicates Tracking 1070489 as yet unmatched pairs. 62434 records in RAM.
INFO 2026-06-08 08:51:21 MarkDuplicates Read 294,000,000 records. Elapsed time: 00:09:45s. Time for last 1,000,000: 1s. Last read position: chr10:24,209,180
INFO 2026-06-08 08:51:21 MarkDuplicates Tracking 1067547 as yet unmatched pairs. 59370 records in RAM.
INFO 2026-06-08 08:51:23 MarkDuplicates Read 295,000,000 records. Elapsed time: 00:09:47s. Time for last 1,000,000: 1s. Last read position: chr10:30,458,137
INFO 2026-06-08 08:51:23 MarkDuplicates Tracking 1064932 as yet unmatched pairs. 56684 records in RAM.
INFO 2026-06-08 08:51:25 MarkDuplicates Read 296,000,000 records. Elapsed time: 00:09:49s. Time for last 1,000,000: 1s. Last read position: chr10:33,330,859
INFO 2026-06-08 08:51:25 MarkDuplicates Tracking 1062254 as yet unmatched pairs. 53960 records in RAM.
INFO 2026-06-08 08:51:26 MarkDuplicates Read 297,000,000 records. Elapsed time: 00:09:50s. Time for last 1,000,000: 1s. Last read position: chr10:45,834,024
INFO 2026-06-08 08:51:26 MarkDuplicates Tracking 1059819 as yet unmatched pairs. 51459 records in RAM.
INFO 2026-06-08 08:51:28 MarkDuplicates Read 298,000,000 records. Elapsed time: 00:09:52s. Time for last 1,000,000: 1s. Last read position: chr10:49,482,721
INFO 2026-06-08 08:51:28 MarkDuplicates Tracking 1057596 as yet unmatched pairs. 49195 records in RAM.
INFO 2026-06-08 08:51:30 MarkDuplicates Read 299,000,000 records. Elapsed time: 00:09:53s. Time for last 1,000,000: 1s. Last read position: chr10:59,814,653
INFO 2026-06-08 08:51:30 MarkDuplicates Tracking 1055690 as yet unmatched pairs. 47208 records in RAM.
INFO 2026-06-08 08:51:31 MarkDuplicates Read 300,000,000 records. Elapsed time: 00:09:55s. Time for last 1,000,000: 1s. Last read position: chr10:68,753,868
INFO 2026-06-08 08:51:31 MarkDuplicates Tracking 1052341 as yet unmatched pairs. 43769 records in RAM.
INFO 2026-06-08 08:51:33 MarkDuplicates Read 301,000,000 records. Elapsed time: 00:09:56s. Time for last 1,000,000: 1s. Last read position: chr10:72,005,890
INFO 2026-06-08 08:51:33 MarkDuplicates Tracking 1049246 as yet unmatched pairs. 40588 records in RAM.
INFO 2026-06-08 08:51:35 MarkDuplicates Read 302,000,000 records. Elapsed time: 00:09:58s. Time for last 1,000,000: 1s. Last read position: chr10:73,798,352
INFO 2026-06-08 08:51:35 MarkDuplicates Tracking 1046239 as yet unmatched pairs. 37534 records in RAM.
INFO 2026-06-08 08:51:36 MarkDuplicates Read 303,000,000 records. Elapsed time: 00:10:00s. Time for last 1,000,000: 1s. Last read position: chr10:78,035,676
INFO 2026-06-08 08:51:36 MarkDuplicates Tracking 1049382 as yet unmatched pairs. 40582 records in RAM.
INFO 2026-06-08 08:51:38 MarkDuplicates Read 304,000,000 records. Elapsed time: 00:10:01s. Time for last 1,000,000: 1s. Last read position: chr10:84,141,518
INFO 2026-06-08 08:51:38 MarkDuplicates Tracking 1040844 as yet unmatched pairs. 31990 records in RAM.
INFO 2026-06-08 08:51:40 MarkDuplicates Read 305,000,000 records. Elapsed time: 00:10:04s. Time for last 1,000,000: 2s. Last read position: chr10:89,226,951
INFO 2026-06-08 08:51:40 MarkDuplicates Tracking 1038127 as yet unmatched pairs. 29191 records in RAM.
INFO 2026-06-08 08:51:42 MarkDuplicates Read 306,000,000 records. Elapsed time: 00:10:06s. Time for last 1,000,000: 1s. Last read position: chr10:94,683,811
INFO 2026-06-08 08:51:42 MarkDuplicates Tracking 1034965 as yet unmatched pairs. 25971 records in RAM.
INFO 2026-06-08 08:51:44 MarkDuplicates Read 307,000,000 records. Elapsed time: 00:10:07s. Time for last 1,000,000: 1s. Last read position: chr10:97,430,529
INFO 2026-06-08 08:51:44 MarkDuplicates Tracking 1032332 as yet unmatched pairs. 23291 records in RAM.
INFO 2026-06-08 08:51:45 MarkDuplicates Read 308,000,000 records. Elapsed time: 00:10:09s. Time for last 1,000,000: 1s. Last read position: chr10:101,018,130
INFO 2026-06-08 08:51:45 MarkDuplicates Tracking 1028974 as yet unmatched pairs. 19875 records in RAM.
INFO 2026-06-08 08:51:47 MarkDuplicates Read 309,000,000 records. Elapsed time: 00:10:11s. Time for last 1,000,000: 1s. Last read position: chr10:102,401,873
INFO 2026-06-08 08:51:47 MarkDuplicates Tracking 1026296 as yet unmatched pairs. 17121 records in RAM.
INFO 2026-06-08 08:51:49 MarkDuplicates Read 310,000,000 records. Elapsed time: 00:10:12s. Time for last 1,000,000: 1s. Last read position: chr10:104,070,513
INFO 2026-06-08 08:51:49 MarkDuplicates Tracking 1024223 as yet unmatched pairs. 14974 records in RAM.
INFO 2026-06-08 08:51:50 MarkDuplicates Read 311,000,000 records. Elapsed time: 00:10:14s. Time for last 1,000,000: 1s. Last read position: chr10:116,679,537
INFO 2026-06-08 08:51:50 MarkDuplicates Tracking 1020091 as yet unmatched pairs. 10766 records in RAM.
INFO 2026-06-08 08:51:52 MarkDuplicates Read 312,000,000 records. Elapsed time: 00:10:16s. Time for last 1,000,000: 1s. Last read position: chr10:119,807,945
INFO 2026-06-08 08:51:52 MarkDuplicates Tracking 1017134 as yet unmatched pairs. 7756 records in RAM.
INFO 2026-06-08 08:51:54 MarkDuplicates Read 313,000,000 records. Elapsed time: 00:10:17s. Time for last 1,000,000: 1s. Last read position: chr10:124,045,664
INFO 2026-06-08 08:51:54 MarkDuplicates Tracking 1014905 as yet unmatched pairs. 5474 records in RAM.
INFO 2026-06-08 08:51:55 MarkDuplicates Read 314,000,000 records. Elapsed time: 00:10:19s. Time for last 1,000,000: 1s. Last read position: chr10:131,901,293
INFO 2026-06-08 08:51:55 MarkDuplicates Tracking 1011611 as yet unmatched pairs. 2102 records in RAM.
INFO 2026-06-08 08:51:58 MarkDuplicates Read 315,000,000 records. Elapsed time: 00:10:21s. Time for last 1,000,000: 2s. Last read position: chr11:315,095
INFO 2026-06-08 08:51:58 MarkDuplicates Tracking 1008372 as yet unmatched pairs. 94468 records in RAM.
INFO 2026-06-08 08:51:59 MarkDuplicates Read 316,000,000 records. Elapsed time: 00:10:23s. Time for last 1,000,000: 1s. Last read position: chr11:759,041
INFO 2026-06-08 08:51:59 MarkDuplicates Tracking 1004861 as yet unmatched pairs. 90917 records in RAM.
INFO 2026-06-08 08:52:01 MarkDuplicates Read 317,000,000 records. Elapsed time: 00:10:24s. Time for last 1,000,000: 1s. Last read position: chr11:1,754,144
INFO 2026-06-08 08:52:01 MarkDuplicates Tracking 1001954 as yet unmatched pairs. 87968 records in RAM.
INFO 2026-06-08 08:52:03 MarkDuplicates Read 318,000,000 records. Elapsed time: 00:10:26s. Time for last 1,000,000: 1s. Last read position: chr11:4,123,265
INFO 2026-06-08 08:52:03 MarkDuplicates Tracking 997875 as yet unmatched pairs. 83836 records in RAM.
INFO 2026-06-08 08:52:04 MarkDuplicates Read 319,000,000 records. Elapsed time: 00:10:28s. Time for last 1,000,000: 1s. Last read position: chr11:9,527,531
INFO 2026-06-08 08:52:04 MarkDuplicates Tracking 994664 as yet unmatched pairs. 80592 records in RAM.
INFO 2026-06-08 08:52:06 MarkDuplicates Read 320,000,000 records. Elapsed time: 00:10:30s. Time for last 1,000,000: 1s. Last read position: chr11:16,974,734
INFO 2026-06-08 08:52:06 MarkDuplicates Tracking 992010 as yet unmatched pairs. 77871 records in RAM.
INFO 2026-06-08 08:52:08 MarkDuplicates Read 321,000,000 records. Elapsed time: 00:10:31s. Time for last 1,000,000: 1s. Last read position: chr11:32,391,995
INFO 2026-06-08 08:52:08 MarkDuplicates Tracking 989066 as yet unmatched pairs. 74884 records in RAM.
INFO 2026-06-08 08:52:09 MarkDuplicates Read 322,000,000 records. Elapsed time: 00:10:33s. Time for last 1,000,000: 1s. Last read position: chr11:44,171,609
INFO 2026-06-08 08:52:09 MarkDuplicates Tracking 986207 as yet unmatched pairs. 71962 records in RAM.
INFO 2026-06-08 08:52:12 MarkDuplicates Read 323,000,000 records. Elapsed time: 00:10:36s. Time for last 1,000,000: 2s. Last read position: chr11:46,751,346
INFO 2026-06-08 08:52:12 MarkDuplicates Tracking 982723 as yet unmatched pairs. 68430 records in RAM.
INFO 2026-06-08 08:52:14 MarkDuplicates Read 324,000,000 records. Elapsed time: 00:10:37s. Time for last 1,000,000: 1s. Last read position: chr11:57,313,640
INFO 2026-06-08 08:52:14 MarkDuplicates Tracking 979461 as yet unmatched pairs. 65108 records in RAM.
INFO 2026-06-08 08:52:16 MarkDuplicates Read 325,000,000 records. Elapsed time: 00:10:39s. Time for last 1,000,000: 1s. Last read position: chr11:57,811,405
INFO 2026-06-08 08:52:16 MarkDuplicates Tracking 978214 as yet unmatched pairs. 63833 records in RAM.
INFO 2026-06-08 08:52:17 MarkDuplicates Read 326,000,000 records. Elapsed time: 00:10:41s. Time for last 1,000,000: 1s. Last read position: chr11:61,397,856
INFO 2026-06-08 08:52:17 MarkDuplicates Tracking 973697 as yet unmatched pairs. 59231 records in RAM.
INFO 2026-06-08 08:52:19 MarkDuplicates Read 327,000,000 records. Elapsed time: 00:10:42s. Time for last 1,000,000: 1s. Last read position: chr11:62,521,995
INFO 2026-06-08 08:52:19 MarkDuplicates Tracking 971406 as yet unmatched pairs. 56897 records in RAM.
INFO 2026-06-08 08:52:20 MarkDuplicates Read 328,000,000 records. Elapsed time: 00:10:44s. Time for last 1,000,000: 1s. Last read position: chr11:62,533,252
INFO 2026-06-08 08:52:20 MarkDuplicates Tracking 968815 as yet unmatched pairs. 54267 records in RAM.
INFO 2026-06-08 08:52:22 MarkDuplicates Read 329,000,000 records. Elapsed time: 00:10:46s. Time for last 1,000,000: 1s. Last read position: chr11:62,831,043
INFO 2026-06-08 08:52:22 MarkDuplicates Tracking 965320 as yet unmatched pairs. 50736 records in RAM.
INFO 2026-06-08 08:52:24 MarkDuplicates Read 330,000,000 records. Elapsed time: 00:10:47s. Time for last 1,000,000: 1s. Last read position: chr11:64,767,704
INFO 2026-06-08 08:52:24 MarkDuplicates Tracking 962020 as yet unmatched pairs. 47399 records in RAM.
INFO 2026-06-08 08:52:25 MarkDuplicates Read 331,000,000 records. Elapsed time: 00:10:49s. Time for last 1,000,000: 1s. Last read position: chr11:65,552,972
INFO 2026-06-08 08:52:25 MarkDuplicates Tracking 958240 as yet unmatched pairs. 43309 records in RAM.
INFO 2026-06-08 08:52:27 MarkDuplicates Read 332,000,000 records. Elapsed time: 00:10:51s. Time for last 1,000,000: 1s. Last read position: chr11:65,779,677
INFO 2026-06-08 08:52:27 MarkDuplicates Tracking 954379 as yet unmatched pairs. 39404 records in RAM.
INFO 2026-06-08 08:52:29 MarkDuplicates Read 333,000,000 records. Elapsed time: 00:10:52s. Time for last 1,000,000: 1s. Last read position: chr11:66,564,589
INFO 2026-06-08 08:52:29 MarkDuplicates Tracking 951004 as yet unmatched pairs. 35998 records in RAM.
INFO 2026-06-08 08:52:30 MarkDuplicates Read 334,000,000 records. Elapsed time: 00:10:54s. Time for last 1,000,000: 1s. Last read position: chr11:67,440,167
INFO 2026-06-08 08:52:30 MarkDuplicates Tracking 947432 as yet unmatched pairs. 32368 records in RAM.
INFO 2026-06-08 08:52:32 MarkDuplicates Read 335,000,000 records. Elapsed time: 00:10:56s. Time for last 1,000,000: 1s. Last read position: chr11:68,544,895
INFO 2026-06-08 08:52:32 MarkDuplicates Tracking 944000 as yet unmatched pairs. 28878 records in RAM.
INFO 2026-06-08 08:52:33 MarkDuplicates Read 336,000,000 records. Elapsed time: 00:10:57s. Time for last 1,000,000: 1s. Last read position: chr11:71,995,464
INFO 2026-06-08 08:52:33 MarkDuplicates Tracking 941088 as yet unmatched pairs. 25894 records in RAM.
INFO 2026-06-08 08:52:35 MarkDuplicates Read 337,000,000 records. Elapsed time: 00:10:59s. Time for last 1,000,000: 1s. Last read position: chr11:73,975,084
INFO 2026-06-08 08:52:35 MarkDuplicates Tracking 937696 as yet unmatched pairs. 22450 records in RAM.
INFO 2026-06-08 08:52:37 MarkDuplicates Read 338,000,000 records. Elapsed time: 00:11:00s. Time for last 1,000,000: 1s. Last read position: chr11:78,436,744
INFO 2026-06-08 08:52:37 MarkDuplicates Tracking 934460 as yet unmatched pairs. 19143 records in RAM.
INFO 2026-06-08 08:52:38 MarkDuplicates Read 339,000,000 records. Elapsed time: 00:11:02s. Time for last 1,000,000: 1s. Last read position: chr11:96,035,872
INFO 2026-06-08 08:52:38 MarkDuplicates Tracking 931563 as yet unmatched pairs. 16188 records in RAM.
INFO 2026-06-08 08:52:40 MarkDuplicates Read 340,000,000 records. Elapsed time: 00:11:04s. Time for last 1,000,000: 1s. Last read position: chr11:111,723,593
INFO 2026-06-08 08:52:40 MarkDuplicates Tracking 928843 as yet unmatched pairs. 13359 records in RAM.
INFO 2026-06-08 08:52:43 MarkDuplicates Read 341,000,000 records. Elapsed time: 00:11:06s. Time for last 1,000,000: 2s. Last read position: chr11:117,161,158
INFO 2026-06-08 08:52:43 MarkDuplicates Tracking 926152 as yet unmatched pairs. 10622 records in RAM.
INFO 2026-06-08 08:52:45 MarkDuplicates Read 342,000,000 records. Elapsed time: 00:11:08s. Time for last 1,000,000: 1s. Last read position: chr11:118,614,634
INFO 2026-06-08 08:52:45 MarkDuplicates Tracking 923102 as yet unmatched pairs. 7542 records in RAM.
INFO 2026-06-08 08:52:46 MarkDuplicates Read 343,000,000 records. Elapsed time: 00:11:10s. Time for last 1,000,000: 1s. Last read position: chr11:120,467,296
INFO 2026-06-08 08:52:46 MarkDuplicates Tracking 919859 as yet unmatched pairs. 4260 records in RAM.
INFO 2026-06-08 08:52:48 MarkDuplicates Read 344,000,000 records. Elapsed time: 00:11:12s. Time for last 1,000,000: 1s. Last read position: chr11:129,857,355
INFO 2026-06-08 08:52:48 MarkDuplicates Tracking 916909 as yet unmatched pairs. 1262 records in RAM.
INFO 2026-06-08 08:52:51 MarkDuplicates Read 345,000,000 records. Elapsed time: 00:11:14s. Time for last 1,000,000: 2s. Last read position: chr12:883,490
INFO 2026-06-08 08:52:51 MarkDuplicates Tracking 914641 as yet unmatched pairs. 116999 records in RAM.
INFO 2026-06-08 08:52:53 MarkDuplicates Read 346,000,000 records. Elapsed time: 00:11:16s. Time for last 1,000,000: 1s. Last read position: chr12:6,236,230
INFO 2026-06-08 08:52:53 MarkDuplicates Tracking 911186 as yet unmatched pairs. 113479 records in RAM.
INFO 2026-06-08 08:52:54 MarkDuplicates Read 347,000,000 records. Elapsed time: 00:11:18s. Time for last 1,000,000: 1s. Last read position: chr12:6,596,094
INFO 2026-06-08 08:52:54 MarkDuplicates Tracking 907972 as yet unmatched pairs. 110221 records in RAM.
INFO 2026-06-08 08:52:56 MarkDuplicates Read 348,000,000 records. Elapsed time: 00:11:20s. Time for last 1,000,000: 1s. Last read position: chr12:7,068,456
INFO 2026-06-08 08:52:56 MarkDuplicates Tracking 904656 as yet unmatched pairs. 106871 records in RAM.
INFO 2026-06-08 08:52:58 MarkDuplicates Read 349,000,000 records. Elapsed time: 00:11:21s. Time for last 1,000,000: 1s. Last read position: chr12:9,072,659
INFO 2026-06-08 08:52:58 MarkDuplicates Tracking 901728 as yet unmatched pairs. 103890 records in RAM.
INFO 2026-06-08 08:52:59 MarkDuplicates Read 350,000,000 records. Elapsed time: 00:11:23s. Time for last 1,000,000: 1s. Last read position: chr12:12,908,388
INFO 2026-06-08 08:52:59 MarkDuplicates Tracking 900424 as yet unmatched pairs. 102529 records in RAM.
INFO 2026-06-08 08:53:01 MarkDuplicates Read 351,000,000 records. Elapsed time: 00:11:25s. Time for last 1,000,000: 1s. Last read position: chr12:21,501,821
INFO 2026-06-08 08:53:01 MarkDuplicates Tracking 896205 as yet unmatched pairs. 98242 records in RAM.
INFO 2026-06-08 08:53:03 MarkDuplicates Read 352,000,000 records. Elapsed time: 00:11:26s. Time for last 1,000,000: 1s. Last read position: chr12:26,790,220
INFO 2026-06-08 08:53:03 MarkDuplicates Tracking 893386 as yet unmatched pairs. 95350 records in RAM.
INFO 2026-06-08 08:53:05 MarkDuplicates Read 353,000,000 records. Elapsed time: 00:11:28s. Time for last 1,000,000: 1s. Last read position: chr12:29,356,386
INFO 2026-06-08 08:53:05 MarkDuplicates Tracking 891295 as yet unmatched pairs. 93189 records in RAM.
INFO 2026-06-08 08:53:06 MarkDuplicates Read 354,000,000 records. Elapsed time: 00:11:30s. Time for last 1,000,000: 1s. Last read position: chr12:32,582,417
INFO 2026-06-08 08:53:06 MarkDuplicates Tracking 887917 as yet unmatched pairs. 89768 records in RAM.
INFO 2026-06-08 08:53:09 MarkDuplicates Read 355,000,000 records. Elapsed time: 00:11:32s. Time for last 1,000,000: 2s. Last read position: chr12:46,207,212
INFO 2026-06-08 08:53:09 MarkDuplicates Tracking 885256 as yet unmatched pairs. 87035 records in RAM.
INFO 2026-06-08 08:53:11 MarkDuplicates Read 356,000,000 records. Elapsed time: 00:11:34s. Time for last 1,000,000: 2s. Last read position: chr12:49,026,968
INFO 2026-06-08 08:53:11 MarkDuplicates Tracking 882197 as yet unmatched pairs. 83936 records in RAM.
INFO 2026-06-08 08:53:12 MarkDuplicates Read 357,000,000 records. Elapsed time: 00:11:36s. Time for last 1,000,000: 1s. Last read position: chr12:49,128,899
INFO 2026-06-08 08:53:12 MarkDuplicates Tracking 879916 as yet unmatched pairs. 81634 records in RAM.
INFO 2026-06-08 08:53:14 MarkDuplicates Read 358,000,000 records. Elapsed time: 00:11:38s. Time for last 1,000,000: 1s. Last read position: chr12:50,130,662
INFO 2026-06-08 08:53:14 MarkDuplicates Tracking 876225 as yet unmatched pairs. 77913 records in RAM.
INFO 2026-06-08 08:53:16 MarkDuplicates Read 359,000,000 records. Elapsed time: 00:11:39s. Time for last 1,000,000: 1s. Last read position: chr12:52,054,787
INFO 2026-06-08 08:53:16 MarkDuplicates Tracking 874517 as yet unmatched pairs. 76166 records in RAM.
INFO 2026-06-08 08:53:18 MarkDuplicates Read 360,000,000 records. Elapsed time: 00:11:41s. Time for last 1,000,000: 1s. Last read position: chr12:52,952,127
INFO 2026-06-08 08:53:18 MarkDuplicates Tracking 869712 as yet unmatched pairs. 71308 records in RAM.
INFO 2026-06-08 08:53:19 MarkDuplicates Read 361,000,000 records. Elapsed time: 00:11:43s. Time for last 1,000,000: 1s. Last read position: chr12:53,443,723
INFO 2026-06-08 08:53:19 MarkDuplicates Tracking 867169 as yet unmatched pairs. 68738 records in RAM.
INFO 2026-06-08 08:53:21 MarkDuplicates Read 362,000,000 records. Elapsed time: 00:11:44s. Time for last 1,000,000: 1s. Last read position: chr12:54,282,283
INFO 2026-06-08 08:53:21 MarkDuplicates Tracking 865165 as yet unmatched pairs. 66708 records in RAM.
INFO 2026-06-08 08:53:23 MarkDuplicates Read 363,000,000 records. Elapsed time: 00:11:46s. Time for last 1,000,000: 1s. Last read position: chr12:55,967,115
INFO 2026-06-08 08:53:23 MarkDuplicates Tracking 861127 as yet unmatched pairs. 62648 records in RAM.
INFO 2026-06-08 08:53:24 MarkDuplicates Read 364,000,000 records. Elapsed time: 00:11:48s. Time for last 1,000,000: 1s. Last read position: chr12:56,253,371
INFO 2026-06-08 08:53:24 MarkDuplicates Tracking 858036 as yet unmatched pairs. 59502 records in RAM.
INFO 2026-06-08 08:53:26 MarkDuplicates Read 365,000,000 records. Elapsed time: 00:11:49s. Time for last 1,000,000: 1s. Last read position: chr12:56,688,022
INFO 2026-06-08 08:53:26 MarkDuplicates Tracking 855130 as yet unmatched pairs. 56551 records in RAM.
INFO 2026-06-08 08:53:28 MarkDuplicates Read 366,000,000 records. Elapsed time: 00:11:51s. Time for last 1,000,000: 1s. Last read position: chr12:57,105,210
INFO 2026-06-08 08:53:28 MarkDuplicates Tracking 853075 as yet unmatched pairs. 54470 records in RAM.
INFO 2026-06-08 08:53:29 MarkDuplicates Read 367,000,000 records. Elapsed time: 00:11:53s. Time for last 1,000,000: 1s. Last read position: chr12:57,525,693
INFO 2026-06-08 08:53:29 MarkDuplicates Tracking 848988 as yet unmatched pairs. 50336 records in RAM.
INFO 2026-06-08 08:53:31 MarkDuplicates Read 368,000,000 records. Elapsed time: 00:11:55s. Time for last 1,000,000: 1s. Last read position: chr12:64,481,841
INFO 2026-06-08 08:53:31 MarkDuplicates Tracking 845898 as yet unmatched pairs. 47211 records in RAM.
INFO 2026-06-08 08:53:33 MarkDuplicates Read 369,000,000 records. Elapsed time: 00:11:56s. Time for last 1,000,000: 1s. Last read position: chr12:68,692,064
INFO 2026-06-08 08:53:33 MarkDuplicates Tracking 843454 as yet unmatched pairs. 44593 records in RAM.
INFO 2026-06-08 08:53:36 MarkDuplicates Read 370,000,000 records. Elapsed time: 00:11:59s. Time for last 1,000,000: 2s. Last read position: chr12:69,348,487
INFO 2026-06-08 08:53:36 MarkDuplicates Tracking 840453 as yet unmatched pairs. 41539 records in RAM.
INFO 2026-06-08 08:53:37 MarkDuplicates Read 371,000,000 records. Elapsed time: 00:12:01s. Time for last 1,000,000: 1s. Last read position: chr12:76,031,026
INFO 2026-06-08 08:53:37 MarkDuplicates Tracking 837452 as yet unmatched pairs. 38487 records in RAM.
INFO 2026-06-08 08:53:39 MarkDuplicates Read 372,000,000 records. Elapsed time: 00:12:03s. Time for last 1,000,000: 1s. Last read position: chr12:92,775,995
INFO 2026-06-08 08:53:39 MarkDuplicates Tracking 834788 as yet unmatched pairs. 35767 records in RAM.
INFO 2026-06-08 08:53:41 MarkDuplicates Read 373,000,000 records. Elapsed time: 00:12:04s. Time for last 1,000,000: 1s. Last read position: chr12:94,971,460
INFO 2026-06-08 08:53:41 MarkDuplicates Tracking 832656 as yet unmatched pairs. 33591 records in RAM.
INFO 2026-06-08 08:53:42 MarkDuplicates Read 374,000,000 records. Elapsed time: 00:12:06s. Time for last 1,000,000: 1s. Last read position: chr12:96,018,863
INFO 2026-06-08 08:53:42 MarkDuplicates Tracking 829409 as yet unmatched pairs. 30308 records in RAM.
INFO 2026-06-08 08:53:44 MarkDuplicates Read 375,000,000 records. Elapsed time: 00:12:08s. Time for last 1,000,000: 1s. Last read position: chr12:103,937,695
INFO 2026-06-08 08:53:44 MarkDuplicates Tracking 826546 as yet unmatched pairs. 27392 records in RAM.
INFO 2026-06-08 08:53:46 MarkDuplicates Read 376,000,000 records. Elapsed time: 00:12:09s. Time for last 1,000,000: 1s. Last read position: chr12:107,697,474
INFO 2026-06-08 08:53:46 MarkDuplicates Tracking 823160 as yet unmatched pairs. 23966 records in RAM.
INFO 2026-06-08 08:53:47 MarkDuplicates Read 377,000,000 records. Elapsed time: 00:12:11s. Time for last 1,000,000: 1s. Last read position: chr12:110,343,359
INFO 2026-06-08 08:53:47 MarkDuplicates Tracking 820490 as yet unmatched pairs. 21269 records in RAM.
INFO 2026-06-08 08:53:49 MarkDuplicates Read 378,000,000 records. Elapsed time: 00:12:12s. Time for last 1,000,000: 1s. Last read position: chr12:112,179,067
INFO 2026-06-08 08:53:49 MarkDuplicates Tracking 816956 as yet unmatched pairs. 17700 records in RAM.
INFO 2026-06-08 08:53:50 MarkDuplicates Read 379,000,000 records. Elapsed time: 00:12:14s. Time for last 1,000,000: 1s. Last read position: chr12:113,822,626
INFO 2026-06-08 08:53:50 MarkDuplicates Tracking 813701 as yet unmatched pairs. 14410 records in RAM.
INFO 2026-06-08 08:53:52 MarkDuplicates Read 380,000,000 records. Elapsed time: 00:12:16s. Time for last 1,000,000: 1s. Last read position: chr12:120,198,958
INFO 2026-06-08 08:53:52 MarkDuplicates Tracking 811158 as yet unmatched pairs. 11822 records in RAM.
INFO 2026-06-08 08:53:53 MarkDuplicates Read 381,000,000 records. Elapsed time: 00:12:17s. Time for last 1,000,000: 1s. Last read position: chr12:122,360,959
INFO 2026-06-08 08:53:53 MarkDuplicates Tracking 807732 as yet unmatched pairs. 8364 records in RAM.
INFO 2026-06-08 08:53:55 MarkDuplicates Read 382,000,000 records. Elapsed time: 00:12:19s. Time for last 1,000,000: 1s. Last read position: chr12:124,362,045
INFO 2026-06-08 08:53:55 MarkDuplicates Tracking 804349 as yet unmatched pairs. 4930 records in RAM.
INFO 2026-06-08 08:53:57 MarkDuplicates Read 383,000,000 records. Elapsed time: 00:12:20s. Time for last 1,000,000: 1s. Last read position: chr12:132,570,380
INFO 2026-06-08 08:53:57 MarkDuplicates Tracking 801398 as yet unmatched pairs. 1922 records in RAM.
INFO 2026-06-08 08:53:58 MarkDuplicates Read 384,000,000 records. Elapsed time: 00:12:22s. Time for last 1,000,000: 1s. Last read position: chr13:20,187,931
INFO 2026-06-08 08:53:58 MarkDuplicates Tracking 798314 as yet unmatched pairs. 20606 records in RAM.
INFO 2026-06-08 08:54:00 MarkDuplicates Read 385,000,000 records. Elapsed time: 00:12:24s. Time for last 1,000,000: 1s. Last read position: chr13:28,678,089
INFO 2026-06-08 08:54:00 MarkDuplicates Tracking 795638 as yet unmatched pairs. 17843 records in RAM.
INFO 2026-06-08 08:54:02 MarkDuplicates Read 386,000,000 records. Elapsed time: 00:12:25s. Time for last 1,000,000: 1s. Last read position: chr13:40,560,447
INFO 2026-06-08 08:54:02 MarkDuplicates Tracking 793226 as yet unmatched pairs. 15385 records in RAM.
INFO 2026-06-08 08:54:04 MarkDuplicates Read 387,000,000 records. Elapsed time: 00:12:28s. Time for last 1,000,000: 2s. Last read position: chr13:46,147,012
INFO 2026-06-08 08:54:04 MarkDuplicates Tracking 790074 as yet unmatched pairs. 12201 records in RAM.
INFO 2026-06-08 08:54:06 MarkDuplicates Read 388,000,000 records. Elapsed time: 00:12:30s. Time for last 1,000,000: 2s. Last read position: chr13:65,787,916
INFO 2026-06-08 08:54:06 MarkDuplicates Tracking 787123 as yet unmatched pairs. 9194 records in RAM.
INFO 2026-06-08 08:54:09 MarkDuplicates Read 389,000,000 records. Elapsed time: 00:12:33s. Time for last 1,000,000: 3s. Last read position: chr13:98,482,265
INFO 2026-06-08 08:54:09 MarkDuplicates Tracking 784638 as yet unmatched pairs. 6646 records in RAM.
INFO 2026-06-08 08:54:11 MarkDuplicates Read 390,000,000 records. Elapsed time: 00:12:35s. Time for last 1,000,000: 1s. Last read position: chr13:110,450,359
INFO 2026-06-08 08:54:11 MarkDuplicates Tracking 781443 as yet unmatched pairs. 3419 records in RAM.
INFO 2026-06-08 08:54:13 MarkDuplicates Read 391,000,000 records. Elapsed time: 00:12:37s. Time for last 1,000,000: 2s. Last read position: chr14:20,448,151
INFO 2026-06-08 08:54:13 MarkDuplicates Tracking 777688 as yet unmatched pairs. 86476 records in RAM.
INFO 2026-06-08 08:54:15 MarkDuplicates Read 392,000,000 records. Elapsed time: 00:12:39s. Time for last 1,000,000: 1s. Last read position: chr14:21,415,577
INFO 2026-06-08 08:54:15 MarkDuplicates Tracking 774848 as yet unmatched pairs. 83592 records in RAM.
INFO 2026-06-08 08:54:17 MarkDuplicates Read 393,000,000 records. Elapsed time: 00:12:41s. Time for last 1,000,000: 1s. Last read position: chr14:22,906,336
INFO 2026-06-08 08:54:17 MarkDuplicates Tracking 771455 as yet unmatched pairs. 80175 records in RAM.
INFO 2026-06-08 08:54:19 MarkDuplicates Read 394,000,000 records. Elapsed time: 00:12:42s. Time for last 1,000,000: 1s. Last read position: chr14:24,145,430
INFO 2026-06-08 08:54:19 MarkDuplicates Tracking 770196 as yet unmatched pairs. 78877 records in RAM.
INFO 2026-06-08 08:54:20 MarkDuplicates Read 395,000,000 records. Elapsed time: 00:12:44s. Time for last 1,000,000: 1s. Last read position: chr14:31,173,197
INFO 2026-06-08 08:54:20 MarkDuplicates Tracking 765557 as yet unmatched pairs. 74198 records in RAM.
INFO 2026-06-08 08:54:22 MarkDuplicates Read 396,000,000 records. Elapsed time: 00:12:46s. Time for last 1,000,000: 1s. Last read position: chr14:49,586,589
INFO 2026-06-08 08:54:22 MarkDuplicates Tracking 762728 as yet unmatched pairs. 71311 records in RAM.
INFO 2026-06-08 08:54:24 MarkDuplicates Read 397,000,000 records. Elapsed time: 00:12:47s. Time for last 1,000,000: 1s. Last read position: chr14:52,019,251
INFO 2026-06-08 08:54:24 MarkDuplicates Tracking 760693 as yet unmatched pairs. 69152 records in RAM.
INFO 2026-06-08 08:54:25 MarkDuplicates Read 398,000,000 records. Elapsed time: 00:12:49s. Time for last 1,000,000: 1s. Last read position: chr14:55,648,058
INFO 2026-06-08 08:54:25 MarkDuplicates Tracking 756851 as yet unmatched pairs. 65281 records in RAM.
INFO 2026-06-08 08:54:27 MarkDuplicates Read 399,000,000 records. Elapsed time: 00:12:51s. Time for last 1,000,000: 1s. Last read position: chr14:63,990,977
INFO 2026-06-08 08:54:27 MarkDuplicates Tracking 754711 as yet unmatched pairs. 63083 records in RAM.
INFO 2026-06-08 08:54:29 MarkDuplicates Read 400,000,000 records. Elapsed time: 00:12:53s. Time for last 1,000,000: 1s. Last read position: chr14:64,132,360
INFO 2026-06-08 08:54:29 MarkDuplicates Tracking 751790 as yet unmatched pairs. 60137 records in RAM.
INFO 2026-06-08 08:54:31 MarkDuplicates Read 401,000,000 records. Elapsed time: 00:12:54s. Time for last 1,000,000: 1s. Last read position: chr14:67,364,922
INFO 2026-06-08 08:54:31 MarkDuplicates Tracking 748382 as yet unmatched pairs. 56681 records in RAM.
INFO 2026-06-08 08:54:32 MarkDuplicates Read 402,000,000 records. Elapsed time: 00:12:56s. Time for last 1,000,000: 1s. Last read position: chr14:71,671,275
INFO 2026-06-08 08:54:32 MarkDuplicates Tracking 745307 as yet unmatched pairs. 53557 records in RAM.
INFO 2026-06-08 08:54:34 MarkDuplicates Read 403,000,000 records. Elapsed time: 00:12:58s. Time for last 1,000,000: 1s. Last read position: chr14:74,863,798
INFO 2026-06-08 08:54:34 MarkDuplicates Tracking 742237 as yet unmatched pairs. 50457 records in RAM.
INFO 2026-06-08 08:54:35 MarkDuplicates Read 404,000,000 records. Elapsed time: 00:12:59s. Time for last 1,000,000: 1s. Last read position: chr14:80,895,779
INFO 2026-06-08 08:54:35 MarkDuplicates Tracking 739029 as yet unmatched pairs. 47212 records in RAM.
INFO 2026-06-08 08:54:37 MarkDuplicates Read 405,000,000 records. Elapsed time: 00:13:01s. Time for last 1,000,000: 1s. Last read position: chr14:92,839,399
INFO 2026-06-08 08:54:37 MarkDuplicates Tracking 735922 as yet unmatched pairs. 44045 records in RAM.
INFO 2026-06-08 08:54:39 MarkDuplicates Read 406,000,000 records. Elapsed time: 00:13:02s. Time for last 1,000,000: 1s. Last read position: chr14:99,536,071
INFO 2026-06-08 08:54:39 MarkDuplicates Tracking 732956 as yet unmatched pairs. 41024 records in RAM.
INFO 2026-06-08 08:54:40 MarkDuplicates Read 407,000,000 records. Elapsed time: 00:13:04s. Time for last 1,000,000: 1s. Last read position: chr14:102,083,904
INFO 2026-06-08 08:54:40 MarkDuplicates Tracking 730057 as yet unmatched pairs. 38090 records in RAM.
INFO 2026-06-08 08:54:42 MarkDuplicates Read 408,000,000 records. Elapsed time: 00:13:05s. Time for last 1,000,000: 1s. Last read position: chr14:104,770,256
INFO 2026-06-08 08:54:42 MarkDuplicates Tracking 726452 as yet unmatched pairs. 34453 records in RAM.
INFO 2026-06-08 08:54:43 MarkDuplicates Read 409,000,000 records. Elapsed time: 00:13:07s. Time for last 1,000,000: 1s. Last read position: chr14:105,587,248
INFO 2026-06-08 08:54:43 MarkDuplicates Tracking 722970 as yet unmatched pairs. 30941 records in RAM.
INFO 2026-06-08 08:54:44 MarkDuplicates Read 410,000,000 records. Elapsed time: 00:13:08s. Time for last 1,000,000: 1s. Last read position: chr14:105,643,193
INFO 2026-06-08 08:54:44 MarkDuplicates Tracking 724936 as yet unmatched pairs. 32892 records in RAM.
INFO 2026-06-08 08:54:46 MarkDuplicates Read 411,000,000 records. Elapsed time: 00:13:10s. Time for last 1,000,000: 1s. Last read position: chr14:105,668,179
INFO 2026-06-08 08:54:46 MarkDuplicates Tracking 732161 as yet unmatched pairs. 40096 records in RAM.
INFO 2026-06-08 08:54:48 MarkDuplicates Read 412,000,000 records. Elapsed time: 00:13:11s. Time for last 1,000,000: 1s. Last read position: chr14:105,707,366
INFO 2026-06-08 08:54:48 MarkDuplicates Tracking 731203 as yet unmatched pairs. 39120 records in RAM.
INFO 2026-06-08 08:54:49 MarkDuplicates Read 413,000,000 records. Elapsed time: 00:13:13s. Time for last 1,000,000: 1s. Last read position: chr14:105,708,401
INFO 2026-06-08 08:54:49 MarkDuplicates Tracking 723335 as yet unmatched pairs. 31234 records in RAM.
INFO 2026-06-08 08:54:50 MarkDuplicates Read 414,000,000 records. Elapsed time: 00:13:14s. Time for last 1,000,000: 1s. Last read position: chr14:105,741,548
INFO 2026-06-08 08:54:50 MarkDuplicates Tracking 722843 as yet unmatched pairs. 30715 records in RAM.
INFO 2026-06-08 08:54:52 MarkDuplicates Read 415,000,000 records. Elapsed time: 00:13:16s. Time for last 1,000,000: 1s. Last read position: chr14:105,741,760
INFO 2026-06-08 08:54:52 MarkDuplicates Tracking 715447 as yet unmatched pairs. 23304 records in RAM.
INFO 2026-06-08 08:54:54 MarkDuplicates Read 416,000,000 records. Elapsed time: 00:13:17s. Time for last 1,000,000: 1s. Last read position: chr14:105,742,121
INFO 2026-06-08 08:54:54 MarkDuplicates Tracking 711560 as yet unmatched pairs. 19370 records in RAM.
INFO 2026-06-08 08:54:55 MarkDuplicates Read 417,000,000 records. Elapsed time: 00:13:19s. Time for last 1,000,000: 1s. Last read position: chr14:105,742,881
INFO 2026-06-08 08:54:55 MarkDuplicates Tracking 723050 as yet unmatched pairs. 30832 records in RAM.
INFO 2026-06-08 08:54:57 MarkDuplicates Read 418,000,000 records. Elapsed time: 00:13:20s. Time for last 1,000,000: 1s. Last read position: chr14:105,769,950
INFO 2026-06-08 08:54:57 MarkDuplicates Tracking 703648 as yet unmatched pairs. 11386 records in RAM.
INFO 2026-06-08 08:54:58 MarkDuplicates Read 419,000,000 records. Elapsed time: 00:13:22s. Time for last 1,000,000: 1s. Last read position: chr14:105,854,384
INFO 2026-06-08 08:54:58 MarkDuplicates Tracking 709387 as yet unmatched pairs. 17121 records in RAM.
INFO 2026-06-08 08:55:00 MarkDuplicates Read 420,000,000 records. Elapsed time: 00:13:23s. Time for last 1,000,000: 1s. Last read position: chr14:105,854,924
INFO 2026-06-08 08:55:00 MarkDuplicates Tracking 703284 as yet unmatched pairs. 10995 records in RAM.
INFO 2026-06-08 08:55:01 MarkDuplicates Read 421,000,000 records. Elapsed time: 00:13:25s. Time for last 1,000,000: 1s. Last read position: chr14:105,855,568
INFO 2026-06-08 08:55:01 MarkDuplicates Tracking 700044 as yet unmatched pairs. 7725 records in RAM.
INFO 2026-06-08 08:55:03 MarkDuplicates Read 422,000,000 records. Elapsed time: 00:13:27s. Time for last 1,000,000: 1s. Last read position: chr14:105,926,627
INFO 2026-06-08 08:55:03 MarkDuplicates Tracking 692832 as yet unmatched pairs. 486 records in RAM.
INFO 2026-06-08 08:55:05 MarkDuplicates Read 423,000,000 records. Elapsed time: 00:13:29s. Time for last 1,000,000: 2s. Last read position: chr15:29,105,432
INFO 2026-06-08 08:55:05 MarkDuplicates Tracking 690469 as yet unmatched pairs. 49635 records in RAM.
INFO 2026-06-08 08:55:07 MarkDuplicates Read 424,000,000 records. Elapsed time: 00:13:30s. Time for last 1,000,000: 1s. Last read position: chr15:35,121,396
INFO 2026-06-08 08:55:07 MarkDuplicates Tracking 688017 as yet unmatched pairs. 47156 records in RAM.
INFO 2026-06-08 08:55:09 MarkDuplicates Read 425,000,000 records. Elapsed time: 00:13:32s. Time for last 1,000,000: 1s. Last read position: chr15:41,470,262
INFO 2026-06-08 08:55:09 MarkDuplicates Tracking 685073 as yet unmatched pairs. 44180 records in RAM.
INFO 2026-06-08 08:55:10 MarkDuplicates Read 426,000,000 records. Elapsed time: 00:13:34s. Time for last 1,000,000: 1s. Last read position: chr15:43,192,740
INFO 2026-06-08 08:55:10 MarkDuplicates Tracking 682222 as yet unmatched pairs. 41310 records in RAM.
INFO 2026-06-08 08:55:12 MarkDuplicates Read 427,000,000 records. Elapsed time: 00:13:35s. Time for last 1,000,000: 1s. Last read position: chr15:44,608,456
INFO 2026-06-08 08:55:12 MarkDuplicates Tracking 679362 as yet unmatched pairs. 38435 records in RAM.
INFO 2026-06-08 08:55:14 MarkDuplicates Read 428,000,000 records. Elapsed time: 00:13:37s. Time for last 1,000,000: 1s. Last read position: chr15:51,536,760
INFO 2026-06-08 08:55:14 MarkDuplicates Tracking 676616 as yet unmatched pairs. 35641 records in RAM.
INFO 2026-06-08 08:55:15 MarkDuplicates Read 429,000,000 records. Elapsed time: 00:13:39s. Time for last 1,000,000: 1s. Last read position: chr15:58,822,054
INFO 2026-06-08 08:55:15 MarkDuplicates Tracking 673717 as yet unmatched pairs. 32708 records in RAM.
INFO 2026-06-08 08:55:18 MarkDuplicates Read 430,000,000 records. Elapsed time: 00:13:42s. Time for last 1,000,000: 2s. Last read position: chr15:63,689,589
INFO 2026-06-08 08:55:18 MarkDuplicates Tracking 670580 as yet unmatched pairs. 29531 records in RAM.
INFO 2026-06-08 08:55:20 MarkDuplicates Read 431,000,000 records. Elapsed time: 00:13:43s. Time for last 1,000,000: 1s. Last read position: chr15:66,485,126
INFO 2026-06-08 08:55:20 MarkDuplicates Tracking 667893 as yet unmatched pairs. 26801 records in RAM.
INFO 2026-06-08 08:55:21 MarkDuplicates Read 432,000,000 records. Elapsed time: 00:13:45s. Time for last 1,000,000: 1s. Last read position: chr15:71,164,936
INFO 2026-06-08 08:55:21 MarkDuplicates Tracking 664265 as yet unmatched pairs. 23136 records in RAM.
INFO 2026-06-08 08:55:23 MarkDuplicates Read 433,000,000 records. Elapsed time: 00:13:46s. Time for last 1,000,000: 1s. Last read position: chr15:73,712,941
INFO 2026-06-08 08:55:23 MarkDuplicates Tracking 661237 as yet unmatched pairs. 20059 records in RAM.
INFO 2026-06-08 08:55:24 MarkDuplicates Read 434,000,000 records. Elapsed time: 00:13:48s. Time for last 1,000,000: 1s. Last read position: chr15:75,207,962
INFO 2026-06-08 08:55:24 MarkDuplicates Tracking 657940 as yet unmatched pairs. 16733 records in RAM.
INFO 2026-06-08 08:55:26 MarkDuplicates Read 435,000,000 records. Elapsed time: 00:13:50s. Time for last 1,000,000: 1s. Last read position: chr15:78,542,585
INFO 2026-06-08 08:55:26 MarkDuplicates Tracking 654936 as yet unmatched pairs. 13700 records in RAM.
INFO 2026-06-08 08:55:28 MarkDuplicates Read 436,000,000 records. Elapsed time: 00:13:51s. Time for last 1,000,000: 1s. Last read position: chr15:84,657,313
INFO 2026-06-08 08:55:28 MarkDuplicates Tracking 651929 as yet unmatched pairs. 10639 records in RAM.
INFO 2026-06-08 08:55:29 MarkDuplicates Read 437,000,000 records. Elapsed time: 00:13:53s. Time for last 1,000,000: 1s. Last read position: chr15:89,318,719
INFO 2026-06-08 08:55:29 MarkDuplicates Tracking 648992 as yet unmatched pairs. 7635 records in RAM.
INFO 2026-06-08 08:55:31 MarkDuplicates Read 438,000,000 records. Elapsed time: 00:13:55s. Time for last 1,000,000: 1s. Last read position: chr15:90,880,964
INFO 2026-06-08 08:55:31 MarkDuplicates Tracking 645910 as yet unmatched pairs. 4531 records in RAM.
INFO 2026-06-08 08:55:33 MarkDuplicates Read 439,000,000 records. Elapsed time: 00:13:57s. Time for last 1,000,000: 2s. Last read position: chr15:101,051,903
INFO 2026-06-08 08:55:33 MarkDuplicates Tracking 642494 as yet unmatched pairs. 1063 records in RAM.
INFO 2026-06-08 08:55:36 MarkDuplicates Read 440,000,000 records. Elapsed time: 00:13:59s. Time for last 1,000,000: 2s. Last read position: chr16:656,413
INFO 2026-06-08 08:55:36 MarkDuplicates Tracking 639044 as yet unmatched pairs. 102106 records in RAM.
INFO 2026-06-08 08:55:37 MarkDuplicates Read 441,000,000 records. Elapsed time: 00:14:01s. Time for last 1,000,000: 1s. Last read position: chr16:1,211,243
INFO 2026-06-08 08:55:37 MarkDuplicates Tracking 634941 as yet unmatched pairs. 97976 records in RAM.
INFO 2026-06-08 08:55:40 MarkDuplicates Read 442,000,000 records. Elapsed time: 00:14:04s. Time for last 1,000,000: 2s. Last read position: chr16:1,961,158
INFO 2026-06-08 08:55:40 MarkDuplicates Tracking 630979 as yet unmatched pairs. 93977 records in RAM.
INFO 2026-06-08 08:55:43 MarkDuplicates Read 443,000,000 records. Elapsed time: 00:14:06s. Time for last 1,000,000: 2s. Last read position: chr16:2,263,154
INFO 2026-06-08 08:55:43 MarkDuplicates Tracking 627218 as yet unmatched pairs. 90189 records in RAM.
INFO 2026-06-08 08:55:44 MarkDuplicates Read 444,000,000 records. Elapsed time: 00:14:08s. Time for last 1,000,000: 1s. Last read position: chr16:2,766,788
INFO 2026-06-08 08:55:44 MarkDuplicates Tracking 624770 as yet unmatched pairs. 87719 records in RAM.
INFO 2026-06-08 08:55:46 MarkDuplicates Read 445,000,000 records. Elapsed time: 00:14:09s. Time for last 1,000,000: 1s. Last read position: chr16:3,662,898
INFO 2026-06-08 08:55:46 MarkDuplicates Tracking 620380 as yet unmatched pairs. 83300 records in RAM.
INFO 2026-06-08 08:55:47 MarkDuplicates Read 446,000,000 records. Elapsed time: 00:14:11s. Time for last 1,000,000: 1s. Last read position: chr16:4,875,226
INFO 2026-06-08 08:55:47 MarkDuplicates Tracking 617040 as yet unmatched pairs. 79941 records in RAM.
INFO 2026-06-08 08:55:49 MarkDuplicates Read 447,000,000 records. Elapsed time: 00:14:13s. Time for last 1,000,000: 1s. Last read position: chr16:11,846,787
INFO 2026-06-08 08:55:49 MarkDuplicates Tracking 613638 as yet unmatched pairs. 76500 records in RAM.
INFO 2026-06-08 08:55:51 MarkDuplicates Read 448,000,000 records. Elapsed time: 00:14:14s. Time for last 1,000,000: 1s. Last read position: chr16:14,895,991
INFO 2026-06-08 08:55:51 MarkDuplicates Tracking 611407 as yet unmatched pairs. 74242 records in RAM.
INFO 2026-06-08 08:55:52 MarkDuplicates Read 449,000,000 records. Elapsed time: 00:14:16s. Time for last 1,000,000: 1s. Last read position: chr16:16,219,598
INFO 2026-06-08 08:55:52 MarkDuplicates Tracking 609142 as yet unmatched pairs. 71964 records in RAM.
INFO 2026-06-08 08:55:53 MarkDuplicates Read 450,000,000 records. Elapsed time: 00:14:17s. Time for last 1,000,000: 1s. Last read position: chr16:18,347,625
INFO 2026-06-08 08:55:53 MarkDuplicates Tracking 608817 as yet unmatched pairs. 71632 records in RAM.
INFO 2026-06-08 08:55:55 MarkDuplicates Read 451,000,000 records. Elapsed time: 00:14:18s. Time for last 1,000,000: 1s. Last read position: chr16:18,838,404
INFO 2026-06-08 08:55:55 MarkDuplicates Tracking 606953 as yet unmatched pairs. 69757 records in RAM.
INFO 2026-06-08 08:55:56 MarkDuplicates Read 452,000,000 records. Elapsed time: 00:14:20s. Time for last 1,000,000: 1s. Last read position: chr16:21,403,886
INFO 2026-06-08 08:55:56 MarkDuplicates Tracking 604980 as yet unmatched pairs. 67763 records in RAM.
INFO 2026-06-08 08:55:58 MarkDuplicates Read 453,000,000 records. Elapsed time: 00:14:21s. Time for last 1,000,000: 1s. Last read position: chr16:21,834,741
INFO 2026-06-08 08:55:58 MarkDuplicates Tracking 602711 as yet unmatched pairs. 65484 records in RAM.
INFO 2026-06-08 08:55:59 MarkDuplicates Read 454,000,000 records. Elapsed time: 00:14:23s. Time for last 1,000,000: 1s. Last read position: chr16:22,263,109
INFO 2026-06-08 08:55:59 MarkDuplicates Tracking 601763 as yet unmatched pairs. 64521 records in RAM.
INFO 2026-06-08 08:56:00 MarkDuplicates Read 455,000,000 records. Elapsed time: 00:14:24s. Time for last 1,000,000: 1s. Last read position: chr16:22,534,761
INFO 2026-06-08 08:56:00 MarkDuplicates Tracking 601143 as yet unmatched pairs. 63896 records in RAM.
INFO 2026-06-08 08:56:02 MarkDuplicates Read 456,000,000 records. Elapsed time: 00:14:26s. Time for last 1,000,000: 1s. Last read position: chr16:27,362,761
INFO 2026-06-08 08:56:02 MarkDuplicates Tracking 598678 as yet unmatched pairs. 61410 records in RAM.
INFO 2026-06-08 08:56:04 MarkDuplicates Read 457,000,000 records. Elapsed time: 00:14:27s. Time for last 1,000,000: 1s. Last read position: chr16:28,830,649
INFO 2026-06-08 08:56:04 MarkDuplicates Tracking 596599 as yet unmatched pairs. 59305 records in RAM.
INFO 2026-06-08 08:56:05 MarkDuplicates Read 458,000,000 records. Elapsed time: 00:14:29s. Time for last 1,000,000: 1s. Last read position: chr16:29,446,809
INFO 2026-06-08 08:56:05 MarkDuplicates Tracking 595060 as yet unmatched pairs. 57752 records in RAM.
INFO 2026-06-08 08:56:06 MarkDuplicates Read 459,000,000 records. Elapsed time: 00:14:30s. Time for last 1,000,000: 1s. Last read position: chr16:29,813,778
INFO 2026-06-08 08:56:06 MarkDuplicates Tracking 592511 as yet unmatched pairs. 55196 records in RAM.
INFO 2026-06-08 08:56:08 MarkDuplicates Read 460,000,000 records. Elapsed time: 00:14:32s. Time for last 1,000,000: 1s. Last read position: chr16:30,194,851
INFO 2026-06-08 08:56:08 MarkDuplicates Tracking 588863 as yet unmatched pairs. 51532 records in RAM.
INFO 2026-06-08 08:56:09 MarkDuplicates Read 461,000,000 records. Elapsed time: 00:14:33s. Time for last 1,000,000: 1s. Last read position: chr16:30,654,912
INFO 2026-06-08 08:56:09 MarkDuplicates Tracking 587196 as yet unmatched pairs. 49860 records in RAM.
INFO 2026-06-08 08:56:11 MarkDuplicates Read 462,000,000 records. Elapsed time: 00:14:34s. Time for last 1,000,000: 1s. Last read position: chr16:31,091,287
INFO 2026-06-08 08:56:11 MarkDuplicates Tracking 584392 as yet unmatched pairs. 47034 records in RAM.
INFO 2026-06-08 08:56:13 MarkDuplicates Read 463,000,000 records. Elapsed time: 00:14:37s. Time for last 1,000,000: 2s. Last read position: chr16:31,191,393
INFO 2026-06-08 08:56:13 MarkDuplicates Tracking 582220 as yet unmatched pairs. 44843 records in RAM.
INFO 2026-06-08 08:56:15 MarkDuplicates Read 464,000,000 records. Elapsed time: 00:14:39s. Time for last 1,000,000: 1s. Last read position: chr16:50,305,815
INFO 2026-06-08 08:56:15 MarkDuplicates Tracking 577942 as yet unmatched pairs. 40522 records in RAM.
INFO 2026-06-08 08:56:17 MarkDuplicates Read 465,000,000 records. Elapsed time: 00:14:40s. Time for last 1,000,000: 1s. Last read position: chr16:56,609,019
INFO 2026-06-08 08:56:17 MarkDuplicates Tracking 582112 as yet unmatched pairs. 44660 records in RAM.
INFO 2026-06-08 08:56:19 MarkDuplicates Read 466,000,000 records. Elapsed time: 00:14:42s. Time for last 1,000,000: 1s. Last read position: chr16:57,661,697
INFO 2026-06-08 08:56:19 MarkDuplicates Tracking 571914 as yet unmatched pairs. 34415 records in RAM.
INFO 2026-06-08 08:56:21 MarkDuplicates Read 467,000,000 records. Elapsed time: 00:14:44s. Time for last 1,000,000: 1s. Last read position: chr16:66,912,542
INFO 2026-06-08 08:56:21 MarkDuplicates Tracking 568629 as yet unmatched pairs. 31098 records in RAM.
INFO 2026-06-08 08:56:22 MarkDuplicates Read 468,000,000 records. Elapsed time: 00:14:46s. Time for last 1,000,000: 1s. Last read position: chr16:67,870,815
INFO 2026-06-08 08:56:22 MarkDuplicates Tracking 565268 as yet unmatched pairs. 27715 records in RAM.
INFO 2026-06-08 08:56:24 MarkDuplicates Read 469,000,000 records. Elapsed time: 00:14:47s. Time for last 1,000,000: 1s. Last read position: chr16:68,833,363
INFO 2026-06-08 08:56:24 MarkDuplicates Tracking 561772 as yet unmatched pairs. 24200 records in RAM.
INFO 2026-06-08 08:56:25 MarkDuplicates Read 470,000,000 records. Elapsed time: 00:14:49s. Time for last 1,000,000: 1s. Last read position: chr16:70,463,762
INFO 2026-06-08 08:56:25 MarkDuplicates Tracking 558616 as yet unmatched pairs. 21022 records in RAM.
INFO 2026-06-08 08:56:27 MarkDuplicates Read 471,000,000 records. Elapsed time: 00:14:51s. Time for last 1,000,000: 1s. Last read position: chr16:72,950,902
INFO 2026-06-08 08:56:27 MarkDuplicates Tracking 555663 as yet unmatched pairs. 18050 records in RAM.
INFO 2026-06-08 08:56:29 MarkDuplicates Read 472,000,000 records. Elapsed time: 00:14:52s. Time for last 1,000,000: 1s. Last read position: chr16:81,090,634
INFO 2026-06-08 08:56:29 MarkDuplicates Tracking 552671 as yet unmatched pairs. 15008 records in RAM.
INFO 2026-06-08 08:56:30 MarkDuplicates Read 473,000,000 records. Elapsed time: 00:14:54s. Time for last 1,000,000: 1s. Last read position: chr16:85,663,392
INFO 2026-06-08 08:56:30 MarkDuplicates Tracking 549129 as yet unmatched pairs. 11414 records in RAM.
INFO 2026-06-08 08:56:32 MarkDuplicates Read 474,000,000 records. Elapsed time: 00:14:55s. Time for last 1,000,000: 1s. Last read position: chr16:88,643,509
INFO 2026-06-08 08:56:32 MarkDuplicates Tracking 548760 as yet unmatched pairs. 11024 records in RAM.
INFO 2026-06-08 08:56:34 MarkDuplicates Read 475,000,000 records. Elapsed time: 00:14:58s. Time for last 1,000,000: 2s. Last read position: chr16:89,288,111
INFO 2026-06-08 08:56:34 MarkDuplicates Tracking 541944 as yet unmatched pairs. 4187 records in RAM.
INFO 2026-06-08 08:56:37 MarkDuplicates Read 476,000,000 records. Elapsed time: 00:15:00s. Time for last 1,000,000: 2s. Last read position: chr16:89,935,703
INFO 2026-06-08 08:56:37 MarkDuplicates Tracking 538149 as yet unmatched pairs. 361 records in RAM.
INFO 2026-06-08 08:56:40 MarkDuplicates Read 477,000,000 records. Elapsed time: 00:15:03s. Time for last 1,000,000: 3s. Last read position: chr17:1,659,440
INFO 2026-06-08 08:56:40 MarkDuplicates Tracking 535143 as yet unmatched pairs. 138380 records in RAM.
INFO 2026-06-08 08:56:41 MarkDuplicates Read 478,000,000 records. Elapsed time: 00:15:05s. Time for last 1,000,000: 1s. Last read position: chr17:3,726,140
INFO 2026-06-08 08:56:41 MarkDuplicates Tracking 531712 as yet unmatched pairs. 134932 records in RAM.
INFO 2026-06-08 08:56:43 MarkDuplicates Read 479,000,000 records. Elapsed time: 00:15:07s. Time for last 1,000,000: 1s. Last read position: chr17:4,979,989
INFO 2026-06-08 08:56:43 MarkDuplicates Tracking 528407 as yet unmatched pairs. 131607 records in RAM.
INFO 2026-06-08 08:56:45 MarkDuplicates Read 480,000,000 records. Elapsed time: 00:15:08s. Time for last 1,000,000: 1s. Last read position: chr17:7,312,207
INFO 2026-06-08 08:56:45 MarkDuplicates Tracking 525753 as yet unmatched pairs. 128934 records in RAM.
INFO 2026-06-08 08:56:46 MarkDuplicates Read 481,000,000 records. Elapsed time: 00:15:10s. Time for last 1,000,000: 1s. Last read position: chr17:7,579,948
INFO 2026-06-08 08:56:46 MarkDuplicates Tracking 523536 as yet unmatched pairs. 126708 records in RAM.
INFO 2026-06-08 08:56:48 MarkDuplicates Read 482,000,000 records. Elapsed time: 00:15:12s. Time for last 1,000,000: 1s. Last read position: chr17:8,289,312
INFO 2026-06-08 08:56:48 MarkDuplicates Tracking 519097 as yet unmatched pairs. 122259 records in RAM.
INFO 2026-06-08 08:56:50 MarkDuplicates Read 483,000,000 records. Elapsed time: 00:15:13s. Time for last 1,000,000: 1s. Last read position: chr17:16,382,057
INFO 2026-06-08 08:56:50 MarkDuplicates Tracking 517515 as yet unmatched pairs. 120660 records in RAM.
INFO 2026-06-08 08:56:51 MarkDuplicates Read 484,000,000 records. Elapsed time: 00:15:15s. Time for last 1,000,000: 1s. Last read position: chr17:18,253,297
INFO 2026-06-08 08:56:51 MarkDuplicates Tracking 512698 as yet unmatched pairs. 115824 records in RAM.
INFO 2026-06-08 08:56:53 MarkDuplicates Read 485,000,000 records. Elapsed time: 00:15:17s. Time for last 1,000,000: 1s. Last read position: chr17:27,749,803
INFO 2026-06-08 08:56:53 MarkDuplicates Tracking 509554 as yet unmatched pairs. 112658 records in RAM.
INFO 2026-06-08 08:56:55 MarkDuplicates Read 486,000,000 records. Elapsed time: 00:15:19s. Time for last 1,000,000: 1s. Last read position: chr17:28,912,505
INFO 2026-06-08 08:56:55 MarkDuplicates Tracking 506646 as yet unmatched pairs. 109735 records in RAM.
INFO 2026-06-08 08:56:57 MarkDuplicates Read 487,000,000 records. Elapsed time: 00:15:20s. Time for last 1,000,000: 1s. Last read position: chr17:30,956,366
INFO 2026-06-08 08:56:57 MarkDuplicates Tracking 503538 as yet unmatched pairs. 106603 records in RAM.
INFO 2026-06-08 08:56:58 MarkDuplicates Read 488,000,000 records. Elapsed time: 00:15:22s. Time for last 1,000,000: 1s. Last read position: chr17:35,017,573
INFO 2026-06-08 08:56:58 MarkDuplicates Tracking 500861 as yet unmatched pairs. 103895 records in RAM.
INFO 2026-06-08 08:57:00 MarkDuplicates Read 489,000,000 records. Elapsed time: 00:15:24s. Time for last 1,000,000: 1s. Last read position: chr17:36,318,785
INFO 2026-06-08 08:57:00 MarkDuplicates Tracking 497811 as yet unmatched pairs. 100831 records in RAM.
INFO 2026-06-08 08:57:02 MarkDuplicates Read 490,000,000 records. Elapsed time: 00:15:25s. Time for last 1,000,000: 1s. Last read position: chr17:38,122,840
INFO 2026-06-08 08:57:02 MarkDuplicates Tracking 495624 as yet unmatched pairs. 98637 records in RAM.
INFO 2026-06-08 08:57:03 MarkDuplicates Read 491,000,000 records. Elapsed time: 00:15:27s. Time for last 1,000,000: 1s. Last read position: chr17:39,204,149
INFO 2026-06-08 08:57:03 MarkDuplicates Tracking 493701 as yet unmatched pairs. 96697 records in RAM.
INFO 2026-06-08 08:57:05 MarkDuplicates Read 492,000,000 records. Elapsed time: 00:15:28s. Time for last 1,000,000: 1s. Last read position: chr17:39,716,386
INFO 2026-06-08 08:57:05 MarkDuplicates Tracking 491464 as yet unmatched pairs. 94433 records in RAM.
INFO 2026-06-08 08:57:07 MarkDuplicates Read 493,000,000 records. Elapsed time: 00:15:30s. Time for last 1,000,000: 1s. Last read position: chr17:40,264,569
INFO 2026-06-08 08:57:07 MarkDuplicates Tracking 486241 as yet unmatched pairs. 89194 records in RAM.
INFO 2026-06-08 08:57:08 MarkDuplicates Read 494,000,000 records. Elapsed time: 00:15:32s. Time for last 1,000,000: 1s. Last read position: chr17:41,867,890
INFO 2026-06-08 08:57:08 MarkDuplicates Tracking 482719 as yet unmatched pairs. 85657 records in RAM.
INFO 2026-06-08 08:57:10 MarkDuplicates Read 495,000,000 records. Elapsed time: 00:15:33s. Time for last 1,000,000: 1s. Last read position: chr17:42,583,550
INFO 2026-06-08 08:57:10 MarkDuplicates Tracking 479329 as yet unmatched pairs. 82254 records in RAM.
INFO 2026-06-08 08:57:11 MarkDuplicates Read 496,000,000 records. Elapsed time: 00:15:35s. Time for last 1,000,000: 1s. Last read position: chr17:44,189,086
INFO 2026-06-08 08:57:11 MarkDuplicates Tracking 476290 as yet unmatched pairs. 79194 records in RAM.
INFO 2026-06-08 08:57:13 MarkDuplicates Read 497,000,000 records. Elapsed time: 00:15:37s. Time for last 1,000,000: 1s. Last read position: chr17:45,286,775
INFO 2026-06-08 08:57:13 MarkDuplicates Tracking 472707 as yet unmatched pairs. 75601 records in RAM.
INFO 2026-06-08 08:57:15 MarkDuplicates Read 498,000,000 records. Elapsed time: 00:15:38s. Time for last 1,000,000: 1s. Last read position: chr17:47,531,331
INFO 2026-06-08 08:57:15 MarkDuplicates Tracking 470861 as yet unmatched pairs. 73731 records in RAM.
INFO 2026-06-08 08:57:16 MarkDuplicates Read 499,000,000 records. Elapsed time: 00:15:40s. Time for last 1,000,000: 1s. Last read position: chr17:49,805,418
INFO 2026-06-08 08:57:16 MarkDuplicates Tracking 467552 as yet unmatched pairs. 70402 records in RAM.
INFO 2026-06-08 08:57:19 MarkDuplicates Read 500,000,000 records. Elapsed time: 00:15:42s. Time for last 1,000,000: 2s. Last read position: chr17:50,188,098
INFO 2026-06-08 08:57:19 MarkDuplicates Tracking 470381 as yet unmatched pairs. 73222 records in RAM.
INFO 2026-06-08 08:57:20 MarkDuplicates Read 501,000,000 records. Elapsed time: 00:15:44s. Time for last 1,000,000: 1s. Last read position: chr17:50,191,382
INFO 2026-06-08 08:57:20 MarkDuplicates Tracking 464110 as yet unmatched pairs. 66942 records in RAM.
INFO 2026-06-08 08:57:22 MarkDuplicates Read 502,000,000 records. Elapsed time: 00:15:46s. Time for last 1,000,000: 1s. Last read position: chr17:50,195,315
INFO 2026-06-08 08:57:22 MarkDuplicates Tracking 458947 as yet unmatched pairs. 61757 records in RAM.
INFO 2026-06-08 08:57:24 MarkDuplicates Read 503,000,000 records. Elapsed time: 00:15:47s. Time for last 1,000,000: 1s. Last read position: chr17:50,199,274
INFO 2026-06-08 08:57:24 MarkDuplicates Tracking 456376 as yet unmatched pairs. 59173 records in RAM.
INFO 2026-06-08 08:57:26 MarkDuplicates Read 504,000,000 records. Elapsed time: 00:15:49s. Time for last 1,000,000: 2s. Last read position: chr17:50,998,585
INFO 2026-06-08 08:57:26 MarkDuplicates Tracking 450145 as yet unmatched pairs. 52934 records in RAM.
INFO 2026-06-08 08:57:28 MarkDuplicates Read 505,000,000 records. Elapsed time: 00:15:51s. Time for last 1,000,000: 1s. Last read position: chr17:59,620,164
INFO 2026-06-08 08:57:28 MarkDuplicates Tracking 449463 as yet unmatched pairs. 52229 records in RAM.
INFO 2026-06-08 08:58:27 MarkDuplicates Read 506,000,000 records. Elapsed time: 00:16:50s. Time for last 1,000,000: 58s. Last read position: chr17:59,697,759
INFO 2026-06-08 08:58:27 MarkDuplicates Tracking 443766 as yet unmatched pairs. 46512 records in RAM.
INFO 2026-06-08 08:59:33 MarkDuplicates Read 507,000,000 records. Elapsed time: 00:17:57s. Time for last 1,000,000: 66s. Last read position: chr17:63,764,738
INFO 2026-06-08 08:59:33 MarkDuplicates Tracking 440798 as yet unmatched pairs. 43515 records in RAM.
INFO 2026-06-08 08:59:35 MarkDuplicates Read 508,000,000 records. Elapsed time: 00:17:59s. Time for last 1,000,000: 1s. Last read position: chr17:65,535,657
INFO 2026-06-08 08:59:35 MarkDuplicates Tracking 437740 as yet unmatched pairs. 40448 records in RAM.
INFO 2026-06-08 08:59:37 MarkDuplicates Read 509,000,000 records. Elapsed time: 00:18:00s. Time for last 1,000,000: 1s. Last read position: chr17:68,525,832
INFO 2026-06-08 08:59:37 MarkDuplicates Tracking 436020 as yet unmatched pairs. 38708 records in RAM.
INFO 2026-06-08 08:59:38 MarkDuplicates Read 510,000,000 records. Elapsed time: 00:18:02s. Time for last 1,000,000: 1s. Last read position: chr17:74,771,772
INFO 2026-06-08 08:59:38 MarkDuplicates Tracking 431778 as yet unmatched pairs. 34442 records in RAM.
INFO 2026-06-08 08:59:40 MarkDuplicates Read 511,000,000 records. Elapsed time: 00:18:03s. Time for last 1,000,000: 1s. Last read position: chr17:75,614,222
INFO 2026-06-08 08:59:40 MarkDuplicates Tracking 428067 as yet unmatched pairs. 30709 records in RAM.
INFO 2026-06-08 08:59:41 MarkDuplicates Read 512,000,000 records. Elapsed time: 00:18:05s. Time for last 1,000,000: 1s. Last read position: chr17:76,328,795
INFO 2026-06-08 08:59:41 MarkDuplicates Tracking 424529 as yet unmatched pairs. 27159 records in RAM.
INFO 2026-06-08 08:59:43 MarkDuplicates Read 513,000,000 records. Elapsed time: 00:18:07s. Time for last 1,000,000: 1s. Last read position: chr17:78,223,500
INFO 2026-06-08 08:59:43 MarkDuplicates Tracking 421161 as yet unmatched pairs. 23756 records in RAM.
INFO 2026-06-08 08:59:45 MarkDuplicates Read 514,000,000 records. Elapsed time: 00:18:08s. Time for last 1,000,000: 1s. Last read position: chr17:80,144,222
INFO 2026-06-08 08:59:45 MarkDuplicates Tracking 417613 as yet unmatched pairs. 20191 records in RAM.
INFO 2026-06-08 08:59:47 MarkDuplicates Read 515,000,000 records. Elapsed time: 00:18:10s. Time for last 1,000,000: 2s. Last read position: chr17:80,346,120
INFO 2026-06-08 08:59:47 MarkDuplicates Tracking 415036 as yet unmatched pairs. 17592 records in RAM.
INFO 2026-06-08 08:59:48 MarkDuplicates Read 516,000,000 records. Elapsed time: 00:18:12s. Time for last 1,000,000: 1s. Last read position: chr17:81,198,911
INFO 2026-06-08 08:59:48 MarkDuplicates Tracking 410837 as yet unmatched pairs. 13374 records in RAM.
INFO 2026-06-08 08:59:50 MarkDuplicates Read 517,000,000 records. Elapsed time: 00:18:14s. Time for last 1,000,000: 1s. Last read position: chr17:81,701,540
INFO 2026-06-08 08:59:50 MarkDuplicates Tracking 407295 as yet unmatched pairs. 9796 records in RAM.
INFO 2026-06-08 08:59:51 MarkDuplicates Read 518,000,000 records. Elapsed time: 00:18:15s. Time for last 1,000,000: 1s. Last read position: chr17:82,010,844
INFO 2026-06-08 08:59:51 MarkDuplicates Tracking 403678 as yet unmatched pairs. 6158 records in RAM.
INFO 2026-06-08 08:59:53 MarkDuplicates Read 519,000,000 records. Elapsed time: 00:18:17s. Time for last 1,000,000: 2s. Last read position: chr17:82,316,337
INFO 2026-06-08 08:59:53 MarkDuplicates Tracking 400007 as yet unmatched pairs. 2468 records in RAM.
INFO 2026-06-08 08:59:55 MarkDuplicates Read 520,000,000 records. Elapsed time: 00:18:19s. Time for last 1,000,000: 1s. Last read position: chr18:2,960,704
INFO 2026-06-08 08:59:55 MarkDuplicates Tracking 396399 as yet unmatched pairs. 14280 records in RAM.
INFO 2026-06-08 08:59:57 MarkDuplicates Read 521,000,000 records. Elapsed time: 00:18:20s. Time for last 1,000,000: 1s. Last read position: chr18:10,689,699
INFO 2026-06-08 08:59:57 MarkDuplicates Tracking 393401 as yet unmatched pairs. 11248 records in RAM.
INFO 2026-06-08 09:00:01 MarkDuplicates Read 522,000,000 records. Elapsed time: 00:18:25s. Time for last 1,000,000: 4s. Last read position: chr18:24,443,099
INFO 2026-06-08 09:00:01 MarkDuplicates Tracking 390469 as yet unmatched pairs. 8291 records in RAM.
INFO 2026-06-08 09:00:04 MarkDuplicates Read 523,000,000 records. Elapsed time: 00:18:27s. Time for last 1,000,000: 2s. Last read position: chr18:46,039,947
INFO 2026-06-08 09:00:04 MarkDuplicates Tracking 387622 as yet unmatched pairs. 5414 records in RAM.
INFO 2026-06-08 09:00:05 MarkDuplicates Read 524,000,000 records. Elapsed time: 00:18:29s. Time for last 1,000,000: 1s. Last read position: chr18:62,244,769
INFO 2026-06-08 09:00:05 MarkDuplicates Tracking 384997 as yet unmatched pairs. 2762 records in RAM.
INFO 2026-06-08 09:00:08 MarkDuplicates Read 525,000,000 records. Elapsed time: 00:18:32s. Time for last 1,000,000: 2s. Last read position: chr19:648,190
INFO 2026-06-08 09:00:08 MarkDuplicates Tracking 381223 as yet unmatched pairs. 152467 records in RAM.
INFO 2026-06-08 09:00:10 MarkDuplicates Read 526,000,000 records. Elapsed time: 00:18:33s. Time for last 1,000,000: 1s. Last read position: chr19:1,116,063
INFO 2026-06-08 09:00:10 MarkDuplicates Tracking 377518 as yet unmatched pairs. 148754 records in RAM.
INFO 2026-06-08 09:00:12 MarkDuplicates Read 527,000,000 records. Elapsed time: 00:18:35s. Time for last 1,000,000: 1s. Last read position: chr19:1,986,884
INFO 2026-06-08 09:00:12 MarkDuplicates Tracking 373249 as yet unmatched pairs. 144483 records in RAM.
INFO 2026-06-08 09:00:13 MarkDuplicates Read 528,000,000 records. Elapsed time: 00:18:37s. Time for last 1,000,000: 1s. Last read position: chr19:3,462,813
INFO 2026-06-08 09:00:13 MarkDuplicates Tracking 369599 as yet unmatched pairs. 140816 records in RAM.
INFO 2026-06-08 09:00:15 MarkDuplicates Read 529,000,000 records. Elapsed time: 00:18:39s. Time for last 1,000,000: 1s. Last read position: chr19:4,817,015
INFO 2026-06-08 09:00:15 MarkDuplicates Tracking 365662 as yet unmatched pairs. 136867 records in RAM.
INFO 2026-06-08 09:00:17 MarkDuplicates Read 530,000,000 records. Elapsed time: 00:18:40s. Time for last 1,000,000: 1s. Last read position: chr19:6,417,019
INFO 2026-06-08 09:00:17 MarkDuplicates Tracking 362117 as yet unmatched pairs. 133293 records in RAM.
INFO 2026-06-08 09:00:18 MarkDuplicates Read 531,000,000 records. Elapsed time: 00:18:42s. Time for last 1,000,000: 1s. Last read position: chr19:7,170,582
INFO 2026-06-08 09:00:18 MarkDuplicates Tracking 358964 as yet unmatched pairs. 130130 records in RAM.
INFO 2026-06-08 09:00:20 MarkDuplicates Read 532,000,000 records. Elapsed time: 00:18:43s. Time for last 1,000,000: 1s. Last read position: chr19:8,856,088
INFO 2026-06-08 09:00:20 MarkDuplicates Tracking 355285 as yet unmatched pairs. 126431 records in RAM.
INFO 2026-06-08 09:00:22 MarkDuplicates Read 533,000,000 records. Elapsed time: 00:18:45s. Time for last 1,000,000: 2s. Last read position: chr19:8,939,179
INFO 2026-06-08 09:00:22 MarkDuplicates Tracking 353229 as yet unmatched pairs. 124371 records in RAM.
INFO 2026-06-08 09:00:23 MarkDuplicates Read 534,000,000 records. Elapsed time: 00:18:47s. Time for last 1,000,000: 1s. Last read position: chr19:8,955,309
INFO 2026-06-08 09:00:23 MarkDuplicates Tracking 350371 as yet unmatched pairs. 121505 records in RAM.
INFO 2026-06-08 09:00:26 MarkDuplicates Read 535,000,000 records. Elapsed time: 00:18:49s. Time for last 1,000,000: 2s. Last read position: chr19:8,963,411
INFO 2026-06-08 09:00:26 MarkDuplicates Tracking 348911 as yet unmatched pairs. 120029 records in RAM.
INFO 2026-06-08 09:00:28 MarkDuplicates Read 536,000,000 records. Elapsed time: 00:18:52s. Time for last 1,000,000: 2s. Last read position: chr19:8,979,492
INFO 2026-06-08 09:00:28 MarkDuplicates Tracking 344599 as yet unmatched pairs. 115711 records in RAM.
INFO 2026-06-08 09:00:30 MarkDuplicates Read 537,000,000 records. Elapsed time: 00:18:53s. Time for last 1,000,000: 1s. Last read position: chr19:10,632,055
INFO 2026-06-08 09:00:30 MarkDuplicates Tracking 341218 as yet unmatched pairs. 112318 records in RAM.
INFO 2026-06-08 09:00:31 MarkDuplicates Read 538,000,000 records. Elapsed time: 00:18:55s. Time for last 1,000,000: 1s. Last read position: chr19:11,448,958
INFO 2026-06-08 09:00:31 MarkDuplicates Tracking 337922 as yet unmatched pairs. 109017 records in RAM.
INFO 2026-06-08 09:00:33 MarkDuplicates Read 539,000,000 records. Elapsed time: 00:18:57s. Time for last 1,000,000: 1s. Last read position: chr19:12,939,590
INFO 2026-06-08 09:00:33 MarkDuplicates Tracking 334884 as yet unmatched pairs. 105971 records in RAM.
INFO 2026-06-08 09:00:35 MarkDuplicates Read 540,000,000 records. Elapsed time: 00:18:58s. Time for last 1,000,000: 1s. Last read position: chr19:14,409,822
INFO 2026-06-08 09:00:35 MarkDuplicates Tracking 330809 as yet unmatched pairs. 101891 records in RAM.
INFO 2026-06-08 09:00:36 MarkDuplicates Read 541,000,000 records. Elapsed time: 00:19:00s. Time for last 1,000,000: 1s. Last read position: chr19:15,243,380
INFO 2026-06-08 09:00:36 MarkDuplicates Tracking 328078 as yet unmatched pairs. 99149 records in RAM.
INFO 2026-06-08 09:00:38 MarkDuplicates Read 542,000,000 records. Elapsed time: 00:19:01s. Time for last 1,000,000: 1s. Last read position: chr19:16,520,156
INFO 2026-06-08 09:00:38 MarkDuplicates Tracking 324031 as yet unmatched pairs. 95089 records in RAM.
INFO 2026-06-08 09:00:40 MarkDuplicates Read 543,000,000 records. Elapsed time: 00:19:04s. Time for last 1,000,000: 2s. Last read position: chr19:17,861,332
INFO 2026-06-08 09:00:40 MarkDuplicates Tracking 320661 as yet unmatched pairs. 91704 records in RAM.
INFO 2026-06-08 09:00:41 MarkDuplicates Read 544,000,000 records. Elapsed time: 00:19:05s. Time for last 1,000,000: 1s. Last read position: chr19:18,745,846
INFO 2026-06-08 09:00:41 MarkDuplicates Tracking 316679 as yet unmatched pairs. 87713 records in RAM.
INFO 2026-06-08 09:00:43 MarkDuplicates Read 545,000,000 records. Elapsed time: 00:19:07s. Time for last 1,000,000: 1s. Last read position: chr19:23,359,570
INFO 2026-06-08 09:00:43 MarkDuplicates Tracking 313156 as yet unmatched pairs. 84183 records in RAM.
INFO 2026-06-08 09:00:45 MarkDuplicates Read 546,000,000 records. Elapsed time: 00:19:08s. Time for last 1,000,000: 1s. Last read position: chr19:34,428,501
INFO 2026-06-08 09:00:45 MarkDuplicates Tracking 310318 as yet unmatched pairs. 81334 records in RAM.
INFO 2026-06-08 09:00:46 MarkDuplicates Read 547,000,000 records. Elapsed time: 00:19:10s. Time for last 1,000,000: 1s. Last read position: chr19:35,719,875
INFO 2026-06-08 09:00:46 MarkDuplicates Tracking 305964 as yet unmatched pairs. 76972 records in RAM.
INFO 2026-06-08 09:00:49 MarkDuplicates Read 548,000,000 records. Elapsed time: 00:19:12s. Time for last 1,000,000: 2s. Last read position: chr19:36,149,811
INFO 2026-06-08 09:00:49 MarkDuplicates Tracking 303165 as yet unmatched pairs. 74166 records in RAM.
INFO 2026-06-08 09:00:51 MarkDuplicates Read 549,000,000 records. Elapsed time: 00:19:15s. Time for last 1,000,000: 2s. Last read position: chr19:38,326,665
INFO 2026-06-08 09:00:51 MarkDuplicates Tracking 299114 as yet unmatched pairs. 70098 records in RAM.
INFO 2026-06-08 09:00:53 MarkDuplicates Read 550,000,000 records. Elapsed time: 00:19:17s. Time for last 1,000,000: 1s. Last read position: chr19:38,837,434
INFO 2026-06-08 09:00:53 MarkDuplicates Tracking 296604 as yet unmatched pairs. 67580 records in RAM.
INFO 2026-06-08 09:00:55 MarkDuplicates Read 551,000,000 records. Elapsed time: 00:19:18s. Time for last 1,000,000: 1s. Last read position: chr19:39,407,870
INFO 2026-06-08 09:00:55 MarkDuplicates Tracking 293220 as yet unmatched pairs. 64184 records in RAM.
INFO 2026-06-08 09:00:56 MarkDuplicates Read 552,000,000 records. Elapsed time: 00:19:20s. Time for last 1,000,000: 1s. Last read position: chr19:39,473,169
INFO 2026-06-08 09:00:56 MarkDuplicates Tracking 288708 as yet unmatched pairs. 59667 records in RAM.
INFO 2026-06-08 09:00:58 MarkDuplicates Read 553,000,000 records. Elapsed time: 00:19:21s. Time for last 1,000,000: 1s. Last read position: chr19:40,241,993
INFO 2026-06-08 09:00:58 MarkDuplicates Tracking 286303 as yet unmatched pairs. 57253 records in RAM.
INFO 2026-06-08 09:00:59 MarkDuplicates Read 554,000,000 records. Elapsed time: 00:19:23s. Time for last 1,000,000: 1s. Last read position: chr19:40,800,650
INFO 2026-06-08 09:00:59 MarkDuplicates Tracking 281914 as yet unmatched pairs. 52847 records in RAM.
INFO 2026-06-08 09:01:01 MarkDuplicates Read 555,000,000 records. Elapsed time: 00:19:24s. Time for last 1,000,000: 1s. Last read position: chr19:41,956,910
INFO 2026-06-08 09:01:01 MarkDuplicates Tracking 278900 as yet unmatched pairs. 49806 records in RAM.
INFO 2026-06-08 09:01:02 MarkDuplicates Read 556,000,000 records. Elapsed time: 00:19:26s. Time for last 1,000,000: 1s. Last read position: chr19:42,291,373
INFO 2026-06-08 09:01:02 MarkDuplicates Tracking 275266 as yet unmatched pairs. 46160 records in RAM.
INFO 2026-06-08 09:01:04 MarkDuplicates Read 557,000,000 records. Elapsed time: 00:19:28s. Time for last 1,000,000: 1s. Last read position: chr19:43,767,625
INFO 2026-06-08 09:01:04 MarkDuplicates Tracking 271363 as yet unmatched pairs. 42249 records in RAM.
INFO 2026-06-08 09:01:06 MarkDuplicates Read 558,000,000 records. Elapsed time: 00:19:29s. Time for last 1,000,000: 1s. Last read position: chr19:44,820,929
INFO 2026-06-08 09:01:06 MarkDuplicates Tracking 268465 as yet unmatched pairs. 39333 records in RAM.
INFO 2026-06-08 09:01:07 MarkDuplicates Read 559,000,000 records. Elapsed time: 00:19:31s. Time for last 1,000,000: 1s. Last read position: chr19:45,090,150
INFO 2026-06-08 09:01:07 MarkDuplicates Tracking 263880 as yet unmatched pairs. 34737 records in RAM.
INFO 2026-06-08 09:01:09 MarkDuplicates Read 560,000,000 records. Elapsed time: 00:19:32s. Time for last 1,000,000: 1s. Last read position: chr19:45,584,628
INFO 2026-06-08 09:01:09 MarkDuplicates Tracking 260019 as yet unmatched pairs. 30866 records in RAM.
INFO 2026-06-08 09:01:10 MarkDuplicates Read 561,000,000 records. Elapsed time: 00:19:34s. Time for last 1,000,000: 1s. Last read position: chr19:46,608,891
INFO 2026-06-08 09:01:10 MarkDuplicates Tracking 256516 as yet unmatched pairs. 27356 records in RAM.
INFO 2026-06-08 09:01:12 MarkDuplicates Read 562,000,000 records. Elapsed time: 00:19:36s. Time for last 1,000,000: 1s. Last read position: chr19:48,474,217
INFO 2026-06-08 09:01:12 MarkDuplicates Tracking 252852 as yet unmatched pairs. 23684 records in RAM.
INFO 2026-06-08 09:01:14 MarkDuplicates Read 563,000,000 records. Elapsed time: 00:19:37s. Time for last 1,000,000: 1s. Last read position: chr19:49,490,232
INFO 2026-06-08 09:01:14 MarkDuplicates Tracking 251582 as yet unmatched pairs. 22397 records in RAM.
INFO 2026-06-08 09:01:16 MarkDuplicates Read 564,000,000 records. Elapsed time: 00:19:40s. Time for last 1,000,000: 2s. Last read position: chr19:49,873,093
INFO 2026-06-08 09:01:16 MarkDuplicates Tracking 245671 as yet unmatched pairs. 16482 records in RAM.
INFO 2026-06-08 09:01:18 MarkDuplicates Read 565,000,000 records. Elapsed time: 00:19:42s. Time for last 1,000,000: 1s. Last read position: chr19:51,411,190
INFO 2026-06-08 09:01:18 MarkDuplicates Tracking 242024 as yet unmatched pairs. 12827 records in RAM.
INFO 2026-06-08 09:01:20 MarkDuplicates Read 566,000,000 records. Elapsed time: 00:19:43s. Time for last 1,000,000: 1s. Last read position: chr19:54,181,114
INFO 2026-06-08 09:01:20 MarkDuplicates Tracking 238921 as yet unmatched pairs. 9709 records in RAM.
INFO 2026-06-08 09:01:21 MarkDuplicates Read 567,000,000 records. Elapsed time: 00:19:45s. Time for last 1,000,000: 1s. Last read position: chr19:55,231,654
INFO 2026-06-08 09:01:21 MarkDuplicates Tracking 235719 as yet unmatched pairs. 6494 records in RAM.
INFO 2026-06-08 09:01:22 MarkDuplicates Read 568,000,000 records. Elapsed time: 00:19:46s. Time for last 1,000,000: 1s. Last read position: chr19:57,702,618
INFO 2026-06-08 09:01:22 MarkDuplicates Tracking 231894 as yet unmatched pairs. 2658 records in RAM.
INFO 2026-06-08 09:01:25 MarkDuplicates Read 569,000,000 records. Elapsed time: 00:19:48s. Time for last 1,000,000: 2s. Last read position: chr20:845,243
INFO 2026-06-08 09:01:25 MarkDuplicates Tracking 228656 as yet unmatched pairs. 76265 records in RAM.
INFO 2026-06-08 09:01:26 MarkDuplicates Read 570,000,000 records. Elapsed time: 00:19:50s. Time for last 1,000,000: 1s. Last read position: chr20:3,865,905
INFO 2026-06-08 09:01:26 MarkDuplicates Tracking 225177 as yet unmatched pairs. 72782 records in RAM.
INFO 2026-06-08 09:01:28 MarkDuplicates Read 571,000,000 records. Elapsed time: 00:19:51s. Time for last 1,000,000: 1s. Last read position: chr20:17,659,133
INFO 2026-06-08 09:01:28 MarkDuplicates Tracking 222033 as yet unmatched pairs. 69610 records in RAM.
INFO 2026-06-08 09:01:29 MarkDuplicates Read 572,000,000 records. Elapsed time: 00:19:53s. Time for last 1,000,000: 1s. Last read position: chr20:31,514,622
INFO 2026-06-08 09:01:29 MarkDuplicates Tracking 221661 as yet unmatched pairs. 69230 records in RAM.
INFO 2026-06-08 09:01:31 MarkDuplicates Read 573,000,000 records. Elapsed time: 00:19:55s. Time for last 1,000,000: 1s. Last read position: chr20:32,436,205
INFO 2026-06-08 09:01:31 MarkDuplicates Tracking 215784 as yet unmatched pairs. 63346 records in RAM.
INFO 2026-06-08 09:01:33 MarkDuplicates Read 574,000,000 records. Elapsed time: 00:19:57s. Time for last 1,000,000: 1s. Last read position: chr20:34,741,215
INFO 2026-06-08 09:01:33 MarkDuplicates Tracking 212454 as yet unmatched pairs. 60014 records in RAM.
INFO 2026-06-08 09:01:34 MarkDuplicates Read 575,000,000 records. Elapsed time: 00:19:58s. Time for last 1,000,000: 1s. Last read position: chr20:35,654,611
INFO 2026-06-08 09:01:34 MarkDuplicates Tracking 209834 as yet unmatched pairs. 57391 records in RAM.
INFO 2026-06-08 09:01:36 MarkDuplicates Read 576,000,000 records. Elapsed time: 00:19:59s. Time for last 1,000,000: 1s. Last read position: chr20:36,863,270
INFO 2026-06-08 09:01:36 MarkDuplicates Tracking 205720 as yet unmatched pairs. 53265 records in RAM.
INFO 2026-06-08 09:01:38 MarkDuplicates Read 577,000,000 records. Elapsed time: 00:20:01s. Time for last 1,000,000: 1s. Last read position: chr20:38,156,050
INFO 2026-06-08 09:01:38 MarkDuplicates Tracking 203242 as yet unmatched pairs. 50781 records in RAM.
INFO 2026-06-08 09:01:39 MarkDuplicates Read 578,000,000 records. Elapsed time: 00:20:03s. Time for last 1,000,000: 1s. Last read position: chr20:41,405,244
INFO 2026-06-08 09:01:39 MarkDuplicates Tracking 199419 as yet unmatched pairs. 46941 records in RAM.
INFO 2026-06-08 09:01:42 MarkDuplicates Read 579,000,000 records. Elapsed time: 00:20:05s. Time for last 1,000,000: 2s. Last read position: chr20:45,253,099
INFO 2026-06-08 09:01:42 MarkDuplicates Tracking 199303 as yet unmatched pairs. 46813 records in RAM.
INFO 2026-06-08 09:01:43 MarkDuplicates Read 580,000,000 records. Elapsed time: 00:20:07s. Time for last 1,000,000: 1s. Last read position: chr20:45,814,389
INFO 2026-06-08 09:01:43 MarkDuplicates Tracking 193612 as yet unmatched pairs. 41112 records in RAM.
INFO 2026-06-08 09:01:45 MarkDuplicates Read 581,000,000 records. Elapsed time: 00:20:09s. Time for last 1,000,000: 1s. Last read position: chr20:46,726,007
INFO 2026-06-08 09:01:45 MarkDuplicates Tracking 189764 as yet unmatched pairs. 37260 records in RAM.
INFO 2026-06-08 09:01:46 MarkDuplicates Read 582,000,000 records. Elapsed time: 00:20:10s. Time for last 1,000,000: 1s. Last read position: chr20:49,248,218
INFO 2026-06-08 09:01:46 MarkDuplicates Tracking 186775 as yet unmatched pairs. 34255 records in RAM.
INFO 2026-06-08 09:01:48 MarkDuplicates Read 583,000,000 records. Elapsed time: 00:20:12s. Time for last 1,000,000: 1s. Last read position: chr20:51,523,313
INFO 2026-06-08 09:01:48 MarkDuplicates Tracking 183386 as yet unmatched pairs. 30858 records in RAM.
INFO 2026-06-08 09:01:49 MarkDuplicates Read 584,000,000 records. Elapsed time: 00:20:13s. Time for last 1,000,000: 1s. Last read position: chr20:57,373,698
INFO 2026-06-08 09:01:49 MarkDuplicates Tracking 180429 as yet unmatched pairs. 27887 records in RAM.
INFO 2026-06-08 09:01:51 MarkDuplicates Read 585,000,000 records. Elapsed time: 00:20:15s. Time for last 1,000,000: 1s. Last read position: chr20:58,992,998
INFO 2026-06-08 09:01:51 MarkDuplicates Tracking 176097 as yet unmatched pairs. 23545 records in RAM.
INFO 2026-06-08 09:01:53 MarkDuplicates Read 586,000,000 records. Elapsed time: 00:20:16s. Time for last 1,000,000: 1s. Last read position: chr20:62,310,457
INFO 2026-06-08 09:01:53 MarkDuplicates Tracking 173079 as yet unmatched pairs. 20510 records in RAM.
INFO 2026-06-08 09:01:54 MarkDuplicates Read 587,000,000 records. Elapsed time: 00:20:18s. Time for last 1,000,000: 1s. Last read position: chr20:62,329,806
INFO 2026-06-08 09:01:54 MarkDuplicates Tracking 168860 as yet unmatched pairs. 16285 records in RAM.
INFO 2026-06-08 09:01:56 MarkDuplicates Read 588,000,000 records. Elapsed time: 00:20:20s. Time for last 1,000,000: 1s. Last read position: chr20:62,664,942
INFO 2026-06-08 09:01:56 MarkDuplicates Tracking 164014 as yet unmatched pairs. 11432 records in RAM.
INFO 2026-06-08 09:01:58 MarkDuplicates Read 589,000,000 records. Elapsed time: 00:20:21s. Time for last 1,000,000: 1s. Last read position: chr20:63,489,062
INFO 2026-06-08 09:01:58 MarkDuplicates Tracking 161376 as yet unmatched pairs. 8788 records in RAM.
INFO 2026-06-08 09:01:59 MarkDuplicates Read 590,000,000 records. Elapsed time: 00:20:23s. Time for last 1,000,000: 1s. Last read position: chr20:63,691,755
INFO 2026-06-08 09:01:59 MarkDuplicates Tracking 156520 as yet unmatched pairs. 3926 records in RAM.
INFO 2026-06-08 09:02:01 MarkDuplicates Read 591,000,000 records. Elapsed time: 00:20:25s. Time for last 1,000,000: 1s. Last read position: chr21:5,033,742
INFO 2026-06-08 09:02:01 MarkDuplicates Tracking 152648 as yet unmatched pairs. 22959 records in RAM.
INFO 2026-06-08 09:02:03 MarkDuplicates Read 592,000,000 records. Elapsed time: 00:20:27s. Time for last 1,000,000: 2s. Last read position: chr21:8,216,862
INFO 2026-06-08 09:02:03 MarkDuplicates Tracking 150592 as yet unmatched pairs. 20862 records in RAM.
INFO 2026-06-08 09:02:04 MarkDuplicates Read 593,000,000 records. Elapsed time: 00:20:28s. Time for last 1,000,000: 1s. Last read position: chr21:8,400,327
INFO 2026-06-08 09:02:04 MarkDuplicates Tracking 149681 as yet unmatched pairs. 19949 records in RAM.
INFO 2026-06-08 09:02:06 MarkDuplicates Read 594,000,000 records. Elapsed time: 00:20:29s. Time for last 1,000,000: 1s. Last read position: chr21:15,870,137
INFO 2026-06-08 09:02:06 MarkDuplicates Tracking 147919 as yet unmatched pairs. 18181 records in RAM.
INFO 2026-06-08 09:02:08 MarkDuplicates Read 595,000,000 records. Elapsed time: 00:20:32s. Time for last 1,000,000: 2s. Last read position: chr21:33,266,435
INFO 2026-06-08 09:02:08 MarkDuplicates Tracking 144862 as yet unmatched pairs. 15116 records in RAM.
INFO 2026-06-08 09:02:11 MarkDuplicates Read 596,000,000 records. Elapsed time: 00:20:34s. Time for last 1,000,000: 2s. Last read position: chr21:37,195,915
INFO 2026-06-08 09:02:11 MarkDuplicates Tracking 141774 as yet unmatched pairs. 12026 records in RAM.
INFO 2026-06-08 09:02:12 MarkDuplicates Read 597,000,000 records. Elapsed time: 00:20:36s. Time for last 1,000,000: 1s. Last read position: chr21:43,419,913
INFO 2026-06-08 09:02:12 MarkDuplicates Tracking 138319 as yet unmatched pairs. 8566 records in RAM.
INFO 2026-06-08 09:02:14 MarkDuplicates Read 598,000,000 records. Elapsed time: 00:20:37s. Time for last 1,000,000: 1s. Last read position: chr21:45,176,055
INFO 2026-06-08 09:02:14 MarkDuplicates Tracking 134786 as yet unmatched pairs. 5027 records in RAM.
INFO 2026-06-08 09:02:15 MarkDuplicates Read 599,000,000 records. Elapsed time: 00:20:39s. Time for last 1,000,000: 1s. Last read position: chr21:46,265,391
INFO 2026-06-08 09:02:15 MarkDuplicates Tracking 131058 as yet unmatched pairs. 1295 records in RAM.
INFO 2026-06-08 09:02:18 MarkDuplicates Read 600,000,000 records. Elapsed time: 00:20:41s. Time for last 1,000,000: 2s. Last read position: chr22:19,038,986
INFO 2026-06-08 09:02:18 MarkDuplicates Tracking 128279 as yet unmatched pairs. 68813 records in RAM.
INFO 2026-06-08 09:02:19 MarkDuplicates Read 601,000,000 records. Elapsed time: 00:20:43s. Time for last 1,000,000: 1s. Last read position: chr22:20,753,015
INFO 2026-06-08 09:02:19 MarkDuplicates Tracking 124232 as yet unmatched pairs. 64765 records in RAM.
INFO 2026-06-08 09:02:21 MarkDuplicates Read 602,000,000 records. Elapsed time: 00:20:44s. Time for last 1,000,000: 1s. Last read position: chr22:22,899,618
INFO 2026-06-08 09:02:21 MarkDuplicates Tracking 121508 as yet unmatched pairs. 62039 records in RAM.
INFO 2026-06-08 09:02:22 MarkDuplicates Read 603,000,000 records. Elapsed time: 00:20:46s. Time for last 1,000,000: 1s. Last read position: chr22:23,780,927
INFO 2026-06-08 09:02:22 MarkDuplicates Tracking 117959 as yet unmatched pairs. 58488 records in RAM.
INFO 2026-06-08 09:02:24 MarkDuplicates Read 604,000,000 records. Elapsed time: 00:20:48s. Time for last 1,000,000: 1s. Last read position: chr22:26,492,046
INFO 2026-06-08 09:02:24 MarkDuplicates Tracking 114735 as yet unmatched pairs. 55262 records in RAM.
INFO 2026-06-08 09:02:26 MarkDuplicates Read 605,000,000 records. Elapsed time: 00:20:49s. Time for last 1,000,000: 1s. Last read position: chr22:29,273,756
INFO 2026-06-08 09:02:26 MarkDuplicates Tracking 112168 as yet unmatched pairs. 52688 records in RAM.
INFO 2026-06-08 09:02:27 MarkDuplicates Read 606,000,000 records. Elapsed time: 00:20:51s. Time for last 1,000,000: 1s. Last read position: chr22:29,508,500
INFO 2026-06-08 09:02:27 MarkDuplicates Tracking 108099 as yet unmatched pairs. 48616 records in RAM.
INFO 2026-06-08 09:02:29 MarkDuplicates Read 607,000,000 records. Elapsed time: 00:20:53s. Time for last 1,000,000: 1s. Last read position: chr22:31,276,851
INFO 2026-06-08 09:02:29 MarkDuplicates Tracking 105034 as yet unmatched pairs. 45550 records in RAM.
INFO 2026-06-08 09:02:31 MarkDuplicates Read 608,000,000 records. Elapsed time: 00:20:55s. Time for last 1,000,000: 1s. Last read position: chr22:35,403,516
INFO 2026-06-08 09:02:31 MarkDuplicates Tracking 101865 as yet unmatched pairs. 42379 records in RAM.
INFO 2026-06-08 09:02:32 MarkDuplicates Read 609,000,000 records. Elapsed time: 00:20:56s. Time for last 1,000,000: 1s. Last read position: chr22:36,285,914
INFO 2026-06-08 09:02:32 MarkDuplicates Tracking 98741 as yet unmatched pairs. 39252 records in RAM.
INFO 2026-06-08 09:02:34 MarkDuplicates Read 610,000,000 records. Elapsed time: 00:20:58s. Time for last 1,000,000: 1s. Last read position: chr22:37,185,240
INFO 2026-06-08 09:02:34 MarkDuplicates Tracking 94888 as yet unmatched pairs. 35396 records in RAM.
INFO 2026-06-08 09:02:36 MarkDuplicates Read 611,000,000 records. Elapsed time: 00:21:00s. Time for last 1,000,000: 1s. Last read position: chr22:38,294,478
INFO 2026-06-08 09:02:36 MarkDuplicates Tracking 91538 as yet unmatched pairs. 32046 records in RAM.
INFO 2026-06-08 09:02:38 MarkDuplicates Read 612,000,000 records. Elapsed time: 00:21:01s. Time for last 1,000,000: 1s. Last read position: chr22:39,426,916
INFO 2026-06-08 09:02:38 MarkDuplicates Tracking 88153 as yet unmatched pairs. 28658 records in RAM.
INFO 2026-06-08 09:02:39 MarkDuplicates Read 613,000,000 records. Elapsed time: 00:21:03s. Time for last 1,000,000: 1s. Last read position: chr22:41,137,694
INFO 2026-06-08 09:02:39 MarkDuplicates Tracking 85077 as yet unmatched pairs. 25575 records in RAM.
INFO 2026-06-08 09:02:41 MarkDuplicates Read 614,000,000 records. Elapsed time: 00:21:04s. Time for last 1,000,000: 1s. Last read position: chr22:41,674,898
INFO 2026-06-08 09:02:41 MarkDuplicates Tracking 82849 as yet unmatched pairs. 23343 records in RAM.
INFO 2026-06-08 09:02:42 MarkDuplicates Read 615,000,000 records. Elapsed time: 00:21:06s. Time for last 1,000,000: 1s. Last read position: chr22:42,636,699
INFO 2026-06-08 09:02:42 MarkDuplicates Tracking 78809 as yet unmatched pairs. 19299 records in RAM.
INFO 2026-06-08 09:02:44 MarkDuplicates Read 616,000,000 records. Elapsed time: 00:21:07s. Time for last 1,000,000: 1s. Last read position: chr22:45,533,785
INFO 2026-06-08 09:02:44 MarkDuplicates Tracking 75973 as yet unmatched pairs. 16457 records in RAM.
INFO 2026-06-08 09:02:45 MarkDuplicates Read 617,000,000 records. Elapsed time: 00:21:09s. Time for last 1,000,000: 1s. Last read position: chr22:46,534,509
INFO 2026-06-08 09:02:45 MarkDuplicates Tracking 71434 as yet unmatched pairs. 11914 records in RAM.
INFO 2026-06-08 09:02:47 MarkDuplicates Read 618,000,000 records. Elapsed time: 00:21:11s. Time for last 1,000,000: 1s. Last read position: chr22:50,276,643
INFO 2026-06-08 09:02:47 MarkDuplicates Tracking 67531 as yet unmatched pairs. 8004 records in RAM.
INFO 2026-06-08 09:02:48 MarkDuplicates Read 619,000,000 records. Elapsed time: 00:21:12s. Time for last 1,000,000: 1s. Last read position: chr22:50,517,650
INFO 2026-06-08 09:02:48 MarkDuplicates Tracking 63128 as yet unmatched pairs. 3599 records in RAM.
INFO 2026-06-08 09:02:50 MarkDuplicates Read 620,000,000 records. Elapsed time: 00:21:14s. Time for last 1,000,000: 1s. Last read position: chrX:2,408,745
INFO 2026-06-08 09:02:50 MarkDuplicates Tracking 58508 as yet unmatched pairs. 52615 records in RAM.
INFO 2026-06-08 09:02:52 MarkDuplicates Read 621,000,000 records. Elapsed time: 00:21:16s. Time for last 1,000,000: 1s. Last read position: chrX:9,709,669
INFO 2026-06-08 09:02:52 MarkDuplicates Tracking 55248 as yet unmatched pairs. 49355 records in RAM.
INFO 2026-06-08 09:02:54 MarkDuplicates Read 622,000,000 records. Elapsed time: 00:21:17s. Time for last 1,000,000: 1s. Last read position: chrX:16,858,731
INFO 2026-06-08 09:02:54 MarkDuplicates Tracking 52486 as yet unmatched pairs. 46590 records in RAM.
INFO 2026-06-08 09:02:56 MarkDuplicates Read 623,000,000 records. Elapsed time: 00:21:19s. Time for last 1,000,000: 1s. Last read position: chrX:24,057,446
INFO 2026-06-08 09:02:56 MarkDuplicates Tracking 50304 as yet unmatched pairs. 44392 records in RAM.
INFO 2026-06-08 09:02:57 MarkDuplicates Read 624,000,000 records. Elapsed time: 00:21:21s. Time for last 1,000,000: 1s. Last read position: chrX:40,589,075
INFO 2026-06-08 09:02:57 MarkDuplicates Tracking 47169 as yet unmatched pairs. 41256 records in RAM.
INFO 2026-06-08 09:02:59 MarkDuplicates Read 625,000,000 records. Elapsed time: 00:21:22s. Time for last 1,000,000: 1s. Last read position: chrX:45,070,138
INFO 2026-06-08 09:02:59 MarkDuplicates Tracking 43459 as yet unmatched pairs. 37544 records in RAM.
INFO 2026-06-08 09:03:00 MarkDuplicates Read 626,000,000 records. Elapsed time: 00:21:24s. Time for last 1,000,000: 1s. Last read position: chrX:47,565,240
INFO 2026-06-08 09:03:00 MarkDuplicates Tracking 40155 as yet unmatched pairs. 34239 records in RAM.
INFO 2026-06-08 09:03:02 MarkDuplicates Read 627,000,000 records. Elapsed time: 00:21:26s. Time for last 1,000,000: 1s. Last read position: chrX:48,923,210
INFO 2026-06-08 09:03:02 MarkDuplicates Tracking 37223 as yet unmatched pairs. 31305 records in RAM.
INFO 2026-06-08 09:03:03 MarkDuplicates Read 628,000,000 records. Elapsed time: 00:21:27s. Time for last 1,000,000: 1s. Last read position: chrX:52,907,217
INFO 2026-06-08 09:03:03 MarkDuplicates Tracking 33302 as yet unmatched pairs. 27384 records in RAM.
INFO 2026-06-08 09:03:05 MarkDuplicates Read 629,000,000 records. Elapsed time: 00:21:28s. Time for last 1,000,000: 1s. Last read position: chrX:53,583,840
INFO 2026-06-08 09:03:05 MarkDuplicates Tracking 30227 as yet unmatched pairs. 24309 records in RAM.
INFO 2026-06-08 09:03:07 MarkDuplicates Read 630,000,000 records. Elapsed time: 00:21:30s. Time for last 1,000,000: 1s. Last read position: chrX:65,727,824
INFO 2026-06-08 09:03:07 MarkDuplicates Tracking 27133 as yet unmatched pairs. 21215 records in RAM.
INFO 2026-06-08 09:03:08 MarkDuplicates Read 631,000,000 records. Elapsed time: 00:21:32s. Time for last 1,000,000: 1s. Last read position: chrX:71,298,796
INFO 2026-06-08 09:03:08 MarkDuplicates Tracking 24637 as yet unmatched pairs. 18719 records in RAM.
INFO 2026-06-08 09:03:10 MarkDuplicates Read 632,000,000 records. Elapsed time: 00:21:33s. Time for last 1,000,000: 1s. Last read position: chrX:77,654,110
INFO 2026-06-08 09:03:10 MarkDuplicates Tracking 21664 as yet unmatched pairs. 15746 records in RAM.
INFO 2026-06-08 09:03:11 MarkDuplicates Read 633,000,000 records. Elapsed time: 00:21:35s. Time for last 1,000,000: 1s. Last read position: chrX:103,676,218
INFO 2026-06-08 09:03:11 MarkDuplicates Tracking 18652 as yet unmatched pairs. 12731 records in RAM.
INFO 2026-06-08 09:03:13 MarkDuplicates Read 634,000,000 records. Elapsed time: 00:21:36s. Time for last 1,000,000: 1s. Last read position: chrX:129,465,952
INFO 2026-06-08 09:03:13 MarkDuplicates Tracking 15648 as yet unmatched pairs. 9724 records in RAM.
INFO 2026-06-08 09:03:14 MarkDuplicates Read 635,000,000 records. Elapsed time: 00:21:38s. Time for last 1,000,000: 1s. Last read position: chrX:149,505,092
INFO 2026-06-08 09:03:14 MarkDuplicates Tracking 12772 as yet unmatched pairs. 6848 records in RAM.
INFO 2026-06-08 09:03:16 MarkDuplicates Read 636,000,000 records. Elapsed time: 00:21:39s. Time for last 1,000,000: 1s. Last read position: chrX:154,348,880
INFO 2026-06-08 09:03:16 MarkDuplicates Tracking 9652 as yet unmatched pairs. 3726 records in RAM.
INFO 2026-06-08 09:03:18 MarkDuplicates Read 637,000,000 records. Elapsed time: 00:21:41s. Time for last 1,000,000: 1s. Last read position: chrX:155,236,306
INFO 2026-06-08 09:03:18 MarkDuplicates Tracking 6115 as yet unmatched pairs. 189 records in RAM.
INFO 2026-06-08 09:03:19 MarkDuplicates Read 638,000,000 records. Elapsed time: 00:21:43s. Time for last 1,000,000: 1s. Last read position: GL000220.1:156,767
INFO 2026-06-08 09:03:19 MarkDuplicates Tracking 3694 as yet unmatched pairs. 205 records in RAM.
INFO 2026-06-08 09:03:20 MarkDuplicates Read 639,000,000 records. Elapsed time: 00:21:44s. Time for last 1,000,000: 1s. Last read position: KI270733.1:132,405
INFO 2026-06-08 09:03:20 MarkDuplicates Tracking 719 as yet unmatched pairs. 582 records in RAM.
INFO 2026-06-08 09:03:21 MarkDuplicates Read 639969573 records. 0 pairs never matched.
INFO 2026-06-08 09:04:10 MarkDuplicates After buildSortedReadEndLists freeMemory: 204142008; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:04:10 MarkDuplicates Will retain up to 1987051520 duplicate indices before spilling to disk.
INFO 2026-06-08 09:04:15 MarkDuplicates Traversing read pair information and detecting duplicates.
WARNING 2026-06-08 09:04:15 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 09:04:26 OpticalDuplicateFinder Large duplicate set. size = 1055
INFO 2026-06-08 09:04:26 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,099
INFO 2026-06-08 09:04:36 OpticalDuplicateFinder Large duplicate set. size = 1354
INFO 2026-06-08 09:04:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,378
INFO 2026-06-08 09:04:36 OpticalDuplicateFinder Large duplicate set. size = 1180
INFO 2026-06-08 09:04:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,226
INFO 2026-06-08 09:04:36 OpticalDuplicateFinder Large duplicate set. size = 1057
INFO 2026-06-08 09:04:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,676
INFO 2026-06-08 09:04:36 OpticalDuplicateFinder Large duplicate set. size = 1632
INFO 2026-06-08 09:04:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,726
INFO 2026-06-08 09:04:36 OpticalDuplicateFinder Large duplicate set. size = 1285
INFO 2026-06-08 09:04:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,226
INFO 2026-06-08 09:04:36 OpticalDuplicateFinder Large duplicate set. size = 2654
INFO 2026-06-08 09:04:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,296
INFO 2026-06-08 09:04:36 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,955
INFO 2026-06-08 09:04:36 OpticalDuplicateFinder Large duplicate set. size = 1540
INFO 2026-06-08 09:04:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,474
INFO 2026-06-08 09:04:36 OpticalDuplicateFinder Large duplicate set. size = 2415
INFO 2026-06-08 09:04:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,790
INFO 2026-06-08 09:04:36 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,438
INFO 2026-06-08 09:04:36 OpticalDuplicateFinder Large duplicate set. size = 1201
INFO 2026-06-08 09:04:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,313
INFO 2026-06-08 09:04:36 OpticalDuplicateFinder Large duplicate set. size = 2637
INFO 2026-06-08 09:04:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,355
INFO 2026-06-08 09:04:36 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,353
INFO 2026-06-08 09:04:36 OpticalDuplicateFinder Large duplicate set. size = 4414
INFO 2026-06-08 09:04:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,429
INFO 2026-06-08 09:04:36 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,458
INFO 2026-06-08 09:04:36 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,155
INFO 2026-06-08 09:04:36 OpticalDuplicateFinder compared 4,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,582
INFO 2026-06-08 09:04:36 OpticalDuplicateFinder Large duplicate set. size = 1182
INFO 2026-06-08 09:04:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,333
INFO 2026-06-08 09:04:36 OpticalDuplicateFinder Large duplicate set. size = 1252
INFO 2026-06-08 09:04:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,155
INFO 2026-06-08 09:04:36 OpticalDuplicateFinder Large duplicate set. size = 1682
INFO 2026-06-08 09:04:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,586
INFO 2026-06-08 09:04:36 OpticalDuplicateFinder Large duplicate set. size = 1022
INFO 2026-06-08 09:04:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,841
INFO 2026-06-08 09:04:36 OpticalDuplicateFinder Large duplicate set. size = 1145
INFO 2026-06-08 09:04:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,257
INFO 2026-06-08 09:04:36 OpticalDuplicateFinder Large duplicate set. size = 1707
INFO 2026-06-08 09:04:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,463
INFO 2026-06-08 09:04:36 OpticalDuplicateFinder Large duplicate set. size = 1692
INFO 2026-06-08 09:04:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,058
INFO 2026-06-08 09:04:36 OpticalDuplicateFinder Large duplicate set. size = 1116
INFO 2026-06-08 09:04:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,744
INFO 2026-06-08 09:04:36 OpticalDuplicateFinder Large duplicate set. size = 1042
INFO 2026-06-08 09:04:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,595
INFO 2026-06-08 09:04:36 OpticalDuplicateFinder Large duplicate set. size = 1199
INFO 2026-06-08 09:04:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,878
INFO 2026-06-08 09:04:41 OpticalDuplicateFinder Large duplicate set. size = 1840
INFO 2026-06-08 09:04:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,394
INFO 2026-06-08 09:05:02 OpticalDuplicateFinder Large duplicate set. size = 1077
INFO 2026-06-08 09:05:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,443
INFO 2026-06-08 09:05:02 OpticalDuplicateFinder Large duplicate set. size = 1368
INFO 2026-06-08 09:05:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,947
INFO 2026-06-08 09:05:02 OpticalDuplicateFinder Large duplicate set. size = 1489
INFO 2026-06-08 09:05:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,442
INFO 2026-06-08 09:05:02 OpticalDuplicateFinder Large duplicate set. size = 1314
INFO 2026-06-08 09:05:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,036
INFO 2026-06-08 09:05:02 OpticalDuplicateFinder Large duplicate set. size = 1424
INFO 2026-06-08 09:05:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,314
INFO 2026-06-08 09:05:02 OpticalDuplicateFinder Large duplicate set. size = 1754
INFO 2026-06-08 09:05:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,848
INFO 2026-06-08 09:05:02 OpticalDuplicateFinder Large duplicate set. size = 1012
INFO 2026-06-08 09:05:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,889
INFO 2026-06-08 09:05:02 OpticalDuplicateFinder Large duplicate set. size = 1189
INFO 2026-06-08 09:05:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,788
INFO 2026-06-08 09:05:03 OpticalDuplicateFinder Large duplicate set. size = 1507
INFO 2026-06-08 09:05:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,545
INFO 2026-06-08 09:05:03 OpticalDuplicateFinder Large duplicate set. size = 1652
INFO 2026-06-08 09:05:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,953
INFO 2026-06-08 09:05:03 OpticalDuplicateFinder Large duplicate set. size = 1211
INFO 2026-06-08 09:05:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,840
INFO 2026-06-08 09:05:03 OpticalDuplicateFinder Large duplicate set. size = 1301
INFO 2026-06-08 09:05:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,284
INFO 2026-06-08 09:05:03 OpticalDuplicateFinder Large duplicate set. size = 1199
INFO 2026-06-08 09:05:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,795
INFO 2026-06-08 09:05:03 OpticalDuplicateFinder Large duplicate set. size = 1195
INFO 2026-06-08 09:05:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,736
INFO 2026-06-08 09:05:03 OpticalDuplicateFinder Large duplicate set. size = 1038
INFO 2026-06-08 09:05:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,909
INFO 2026-06-08 09:05:03 OpticalDuplicateFinder Large duplicate set. size = 1001
INFO 2026-06-08 09:05:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,143
INFO 2026-06-08 09:05:03 OpticalDuplicateFinder Large duplicate set. size = 1039
INFO 2026-06-08 09:05:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,309
INFO 2026-06-08 09:05:03 OpticalDuplicateFinder Large duplicate set. size = 1408
INFO 2026-06-08 09:05:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,200
INFO 2026-06-08 09:05:03 OpticalDuplicateFinder Large duplicate set. size = 1306
INFO 2026-06-08 09:05:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,661
INFO 2026-06-08 09:05:03 OpticalDuplicateFinder Large duplicate set. size = 1602
INFO 2026-06-08 09:05:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,104
INFO 2026-06-08 09:05:03 OpticalDuplicateFinder Large duplicate set. size = 1693
INFO 2026-06-08 09:05:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,749
INFO 2026-06-08 09:05:03 OpticalDuplicateFinder Large duplicate set. size = 1593
INFO 2026-06-08 09:05:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,272
INFO 2026-06-08 09:05:03 OpticalDuplicateFinder Large duplicate set. size = 2025
INFO 2026-06-08 09:05:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,404
INFO 2026-06-08 09:05:03 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,938
INFO 2026-06-08 09:05:03 OpticalDuplicateFinder Large duplicate set. size = 1166
INFO 2026-06-08 09:05:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,235
INFO 2026-06-08 09:05:03 OpticalDuplicateFinder Large duplicate set. size = 1049
INFO 2026-06-08 09:05:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,109
INFO 2026-06-08 09:05:03 OpticalDuplicateFinder Large duplicate set. size = 1323
INFO 2026-06-08 09:05:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,187
INFO 2026-06-08 09:05:03 OpticalDuplicateFinder Large duplicate set. size = 1479
INFO 2026-06-08 09:05:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,043
INFO 2026-06-08 09:05:03 OpticalDuplicateFinder Large duplicate set. size = 1997
INFO 2026-06-08 09:05:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,157
INFO 2026-06-08 09:05:03 OpticalDuplicateFinder Large duplicate set. size = 1071
INFO 2026-06-08 09:05:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,210
INFO 2026-06-08 09:05:03 OpticalDuplicateFinder Large duplicate set. size = 1645
INFO 2026-06-08 09:05:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,436
INFO 2026-06-08 09:05:03 OpticalDuplicateFinder Large duplicate set. size = 1016
INFO 2026-06-08 09:05:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,680
INFO 2026-06-08 09:05:03 OpticalDuplicateFinder Large duplicate set. size = 1351
INFO 2026-06-08 09:05:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,836
INFO 2026-06-08 09:05:03 OpticalDuplicateFinder Large duplicate set. size = 2623
INFO 2026-06-08 09:05:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,864
INFO 2026-06-08 09:05:03 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,790
INFO 2026-06-08 09:05:03 OpticalDuplicateFinder Large duplicate set. size = 1429
INFO 2026-06-08 09:05:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,605
INFO 2026-06-08 09:05:03 OpticalDuplicateFinder Large duplicate set. size = 1999
INFO 2026-06-08 09:05:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,701
INFO 2026-06-08 09:05:03 OpticalDuplicateFinder Large duplicate set. size = 1364
INFO 2026-06-08 09:05:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,594
INFO 2026-06-08 09:05:03 OpticalDuplicateFinder Large duplicate set. size = 1134
INFO 2026-06-08 09:05:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,470
INFO 2026-06-08 09:05:03 OpticalDuplicateFinder Large duplicate set. size = 1097
INFO 2026-06-08 09:05:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,160
INFO 2026-06-08 09:05:03 OpticalDuplicateFinder Large duplicate set. size = 1169
INFO 2026-06-08 09:05:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,889
INFO 2026-06-08 09:05:04 OpticalDuplicateFinder Large duplicate set. size = 1170
INFO 2026-06-08 09:05:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,271
INFO 2026-06-08 09:05:04 OpticalDuplicateFinder Large duplicate set. size = 1326
INFO 2026-06-08 09:05:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,218
INFO 2026-06-08 09:05:12 OpticalDuplicateFinder Large duplicate set. size = 1102
INFO 2026-06-08 09:05:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,677
INFO 2026-06-08 09:05:27 MarkDuplicates Traversing fragment information and detecting duplicates.
WARNING 2026-06-08 09:05:28 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 09:06:30 MarkDuplicates Sorting list of duplicate records.
INFO 2026-06-08 09:06:40 MarkDuplicates After generateDuplicateIndexes freeMemory: 10792632320; totalMemory: 26742882304; maxMemory: 63585648640
INFO 2026-06-08 09:06:40 MarkDuplicates Marking 266557666 records as duplicates.
INFO 2026-06-08 09:06:40 MarkDuplicates Found 8470481 optical duplicate clusters.
INFO 2026-06-08 09:06:40 MarkDuplicates Reads are assumed to be ordered by: coordinate
INFO 2026-06-08 09:06:57 MarkDuplicates Written 10,000,000 records. Elapsed time: 00:00:17s. Time for last 10,000,000: 17s. Last read position: chr1:24,902,172
INFO 2026-06-08 09:07:14 MarkDuplicates Written 20,000,000 records. Elapsed time: 00:00:34s. Time for last 10,000,000: 17s. Last read position: chr1:64,777,746
INFO 2026-06-08 09:07:32 MarkDuplicates Written 30,000,000 records. Elapsed time: 00:00:51s. Time for last 10,000,000: 17s. Last read position: chr1:149,886,263
INFO 2026-06-08 09:07:49 MarkDuplicates Written 40,000,000 records. Elapsed time: 00:01:08s. Time for last 10,000,000: 16s. Last read position: chr1:161,542,377
INFO 2026-06-08 09:08:06 MarkDuplicates Written 50,000,000 records. Elapsed time: 00:01:25s. Time for last 10,000,000: 17s. Last read position: chr1:211,295,702
INFO 2026-06-08 09:08:23 MarkDuplicates Written 60,000,000 records. Elapsed time: 00:01:43s. Time for last 10,000,000: 17s. Last read position: chr2:32,916,255
INFO 2026-06-08 09:08:41 MarkDuplicates Written 70,000,000 records. Elapsed time: 00:02:01s. Time for last 10,000,000: 17s. Last read position: chr2:63,594,513
INFO 2026-06-08 09:08:59 MarkDuplicates Written 80,000,000 records. Elapsed time: 00:02:19s. Time for last 10,000,000: 18s. Last read position: chr2:110,454,891
INFO 2026-06-08 09:09:18 MarkDuplicates Written 90,000,000 records. Elapsed time: 00:02:37s. Time for last 10,000,000: 18s. Last read position: chr2:174,571,774
INFO 2026-06-08 09:09:36 MarkDuplicates Written 100,000,000 records. Elapsed time: 00:02:55s. Time for last 10,000,000: 18s. Last read position: chr2:219,222,666
INFO 2026-06-08 09:09:54 MarkDuplicates Written 110,000,000 records. Elapsed time: 00:03:13s. Time for last 10,000,000: 18s. Last read position: chr3:45,095,417
INFO 2026-06-08 09:10:12 MarkDuplicates Written 120,000,000 records. Elapsed time: 00:03:31s. Time for last 10,000,000: 18s. Last read position: chr3:119,229,909
INFO 2026-06-08 09:10:30 MarkDuplicates Written 130,000,000 records. Elapsed time: 00:03:50s. Time for last 10,000,000: 18s. Last read position: chr3:171,007,167
INFO 2026-06-08 09:10:48 MarkDuplicates Written 140,000,000 records. Elapsed time: 00:04:08s. Time for last 10,000,000: 18s. Last read position: chr4:25,669,802
INFO 2026-06-08 09:11:07 MarkDuplicates Written 150,000,000 records. Elapsed time: 00:04:26s. Time for last 10,000,000: 18s. Last read position: chr4:182,688,215
INFO 2026-06-08 09:11:25 MarkDuplicates Written 160,000,000 records. Elapsed time: 00:04:45s. Time for last 10,000,000: 18s. Last read position: chr5:98,856,497
INFO 2026-06-08 09:11:43 MarkDuplicates Written 170,000,000 records. Elapsed time: 00:05:03s. Time for last 10,000,000: 18s. Last read position: chr5:154,793,610
INFO 2026-06-08 09:12:01 MarkDuplicates Written 180,000,000 records. Elapsed time: 00:05:21s. Time for last 10,000,000: 17s. Last read position: chr6:26,055,949
INFO 2026-06-08 09:12:19 MarkDuplicates Written 190,000,000 records. Elapsed time: 00:05:38s. Time for last 10,000,000: 17s. Last read position: chr6:33,068,662
INFO 2026-06-08 09:12:38 MarkDuplicates Written 200,000,000 records. Elapsed time: 00:05:57s. Time for last 10,000,000: 18s. Last read position: chr6:87,259,100
INFO 2026-06-08 09:12:56 MarkDuplicates Written 210,000,000 records. Elapsed time: 00:06:15s. Time for last 10,000,000: 18s. Last read position: chr6:163,566,733
INFO 2026-06-08 09:13:14 MarkDuplicates Written 220,000,000 records. Elapsed time: 00:06:33s. Time for last 10,000,000: 18s. Last read position: chr7:73,175,429
INFO 2026-06-08 09:13:32 MarkDuplicates Written 230,000,000 records. Elapsed time: 00:06:52s. Time for last 10,000,000: 18s. Last read position: chr7:100,885,201
INFO 2026-06-08 09:13:50 MarkDuplicates Written 240,000,000 records. Elapsed time: 00:07:10s. Time for last 10,000,000: 18s. Last read position: chr7:139,573,113
INFO 2026-06-08 09:14:09 MarkDuplicates Written 250,000,000 records. Elapsed time: 00:07:28s. Time for last 10,000,000: 18s. Last read position: chr8:25,389,194
INFO 2026-06-08 09:14:27 MarkDuplicates Written 260,000,000 records. Elapsed time: 00:07:46s. Time for last 10,000,000: 18s. Last read position: chr8:94,514,895
INFO 2026-06-08 09:14:45 MarkDuplicates Written 270,000,000 records. Elapsed time: 00:08:04s. Time for last 10,000,000: 18s. Last read position: chr8:143,918,885
INFO 2026-06-08 09:15:03 MarkDuplicates Written 280,000,000 records. Elapsed time: 00:08:23s. Time for last 10,000,000: 18s. Last read position: chr9:93,288,919
INFO 2026-06-08 09:15:22 MarkDuplicates Written 290,000,000 records. Elapsed time: 00:08:41s. Time for last 10,000,000: 18s. Last read position: chr9:136,477,067
INFO 2026-06-08 09:15:40 MarkDuplicates Written 300,000,000 records. Elapsed time: 00:08:59s. Time for last 10,000,000: 18s. Last read position: chr10:68,753,868
INFO 2026-06-08 09:15:58 MarkDuplicates Written 310,000,000 records. Elapsed time: 00:09:17s. Time for last 10,000,000: 18s. Last read position: chr10:104,070,513
INFO 2026-06-08 09:16:16 MarkDuplicates Written 320,000,000 records. Elapsed time: 00:09:36s. Time for last 10,000,000: 18s. Last read position: chr11:16,974,734
INFO 2026-06-08 09:16:34 MarkDuplicates Written 330,000,000 records. Elapsed time: 00:09:53s. Time for last 10,000,000: 17s. Last read position: chr11:64,767,704
INFO 2026-06-08 09:16:52 MarkDuplicates Written 340,000,000 records. Elapsed time: 00:10:12s. Time for last 10,000,000: 18s. Last read position: chr11:111,723,593
INFO 2026-06-08 09:17:11 MarkDuplicates Written 350,000,000 records. Elapsed time: 00:10:30s. Time for last 10,000,000: 18s. Last read position: chr12:12,908,388
INFO 2026-06-08 09:17:29 MarkDuplicates Written 360,000,000 records. Elapsed time: 00:10:48s. Time for last 10,000,000: 18s. Last read position: chr12:52,952,127
INFO 2026-06-08 09:17:47 MarkDuplicates Written 370,000,000 records. Elapsed time: 00:11:07s. Time for last 10,000,000: 18s. Last read position: chr12:69,348,487
INFO 2026-06-08 09:18:06 MarkDuplicates Written 380,000,000 records. Elapsed time: 00:11:25s. Time for last 10,000,000: 18s. Last read position: chr12:120,198,958
INFO 2026-06-08 09:18:24 MarkDuplicates Written 390,000,000 records. Elapsed time: 00:11:43s. Time for last 10,000,000: 18s. Last read position: chr13:110,450,359
INFO 2026-06-08 09:18:43 MarkDuplicates Written 400,000,000 records. Elapsed time: 00:12:02s. Time for last 10,000,000: 18s. Last read position: chr14:64,132,360
INFO 2026-06-08 09:19:01 MarkDuplicates Written 410,000,000 records. Elapsed time: 00:12:20s. Time for last 10,000,000: 18s. Last read position: chr14:105,643,193
INFO 2026-06-08 09:19:18 MarkDuplicates Written 420,000,000 records. Elapsed time: 00:12:37s. Time for last 10,000,000: 17s. Last read position: chr14:105,854,924
INFO 2026-06-08 09:19:37 MarkDuplicates Written 430,000,000 records. Elapsed time: 00:12:56s. Time for last 10,000,000: 18s. Last read position: chr15:63,689,589
INFO 2026-06-08 09:19:55 MarkDuplicates Written 440,000,000 records. Elapsed time: 00:13:14s. Time for last 10,000,000: 18s. Last read position: chr16:656,413
INFO 2026-06-08 09:20:13 MarkDuplicates Written 450,000,000 records. Elapsed time: 00:13:32s. Time for last 10,000,000: 17s. Last read position: chr16:18,347,625
INFO 2026-06-08 09:20:30 MarkDuplicates Written 460,000,000 records. Elapsed time: 00:13:50s. Time for last 10,000,000: 17s. Last read position: chr16:30,194,851
INFO 2026-06-08 09:20:48 MarkDuplicates Written 470,000,000 records. Elapsed time: 00:14:07s. Time for last 10,000,000: 17s. Last read position: chr16:70,463,762
INFO 2026-06-08 09:21:06 MarkDuplicates Written 480,000,000 records. Elapsed time: 00:14:25s. Time for last 10,000,000: 17s. Last read position: chr17:7,312,207
INFO 2026-06-08 09:21:23 MarkDuplicates Written 490,000,000 records. Elapsed time: 00:14:42s. Time for last 10,000,000: 17s. Last read position: chr17:38,122,840
INFO 2026-06-08 09:21:41 MarkDuplicates Written 500,000,000 records. Elapsed time: 00:15:00s. Time for last 10,000,000: 17s. Last read position: chr17:50,188,098
INFO 2026-06-08 09:21:58 MarkDuplicates Written 510,000,000 records. Elapsed time: 00:15:17s. Time for last 10,000,000: 17s. Last read position: chr17:74,771,772
INFO 2026-06-08 09:22:16 MarkDuplicates Written 520,000,000 records. Elapsed time: 00:15:35s. Time for last 10,000,000: 17s. Last read position: chr18:2,960,704
INFO 2026-06-08 09:22:34 MarkDuplicates Written 530,000,000 records. Elapsed time: 00:15:53s. Time for last 10,000,000: 18s. Last read position: chr19:6,417,019
INFO 2026-06-08 09:22:51 MarkDuplicates Written 540,000,000 records. Elapsed time: 00:16:10s. Time for last 10,000,000: 17s. Last read position: chr19:14,409,822
INFO 2026-06-08 09:23:09 MarkDuplicates Written 550,000,000 records. Elapsed time: 00:16:28s. Time for last 10,000,000: 17s. Last read position: chr19:38,837,434
INFO 2026-06-08 09:23:26 MarkDuplicates Written 560,000,000 records. Elapsed time: 00:16:45s. Time for last 10,000,000: 17s. Last read position: chr19:45,584,628
INFO 2026-06-08 09:23:44 MarkDuplicates Written 570,000,000 records. Elapsed time: 00:17:03s. Time for last 10,000,000: 17s. Last read position: chr20:3,865,905
INFO 2026-06-08 09:24:01 MarkDuplicates Written 580,000,000 records. Elapsed time: 00:17:21s. Time for last 10,000,000: 17s. Last read position: chr20:45,814,389
INFO 2026-06-08 09:24:18 MarkDuplicates Written 590,000,000 records. Elapsed time: 00:17:38s. Time for last 10,000,000: 17s. Last read position: chr20:63,691,755
INFO 2026-06-08 09:24:35 MarkDuplicates Written 600,000,000 records. Elapsed time: 00:17:54s. Time for last 10,000,000: 16s. Last read position: chr22:19,038,986
INFO 2026-06-08 09:24:53 MarkDuplicates Written 610,000,000 records. Elapsed time: 00:18:12s. Time for last 10,000,000: 17s. Last read position: chr22:37,185,240
INFO 2026-06-08 09:25:10 MarkDuplicates Written 620,000,000 records. Elapsed time: 00:18:29s. Time for last 10,000,000: 17s. Last read position: chrX:2,408,745
INFO 2026-06-08 09:25:27 MarkDuplicates Written 630,000,000 records. Elapsed time: 00:18:47s. Time for last 10,000,000: 17s. Last read position: chrX:65,727,824
INFO 2026-06-08 09:25:44 MarkDuplicates Written 640,000,000 records. Elapsed time: 00:19:03s. Time for last 10,000,000: 16s. Last read position: */*
INFO 2026-06-08 09:25:54 MarkDuplicates Writing complete. Closing input iterator.
INFO 2026-06-08 09:25:54 MarkDuplicates Duplicate Index cleanup.
INFO 2026-06-08 09:25:54 MarkDuplicates Getting Memory Stats.
INFO 2026-06-08 09:25:54 MarkDuplicates Before output close freeMemory: 201495512; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:25:54 MarkDuplicates Closed outputs. Getting more Memory Stats.
INFO 2026-06-08 09:25:54 MarkDuplicates After output close freeMemory: 104116456; totalMemory: 134217728; maxMemory: 63585648640
[Mon Jun 08 09:25:54 GMT 2026] picard.sam.markduplicates.MarkDuplicates done. Elapsed time: 44.34 minutes.
Runtime.totalMemory()=134217728
Tool returned:
0
ls: *cram: No such file or directory
ls: *.crai: No such file or directory