Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-fe242a7f-c5b9-4d3f-88fa-f3e739280d3a/45/503758169673f6b79761b4db9d3b84/dummy_file_fusioncatcher.txt
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0c/6519ad5518a0e0bd4ce875a1237308/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0c/6519ad5518a0e0bd4ce875a1237308/.command.run
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/20/c9824b4e7bf344c425b1aaebce7061/1173_BEE_T1_RNA_SLD_01_A23T55JLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8e/bc47799a342dcc774ad19911323129/1173_BEE_T1_RNA_SLD_01_A23T55JLT4_1.arriba.fusions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)
[32mRunning application...[0m
MYB--NFIB
starfusion
arriba
TLK2P1--AC110079.1
starfusion
COL1A1--SLC45A4
starfusion
TLK2--AC240565.1
starfusion
STX16--NPEPL1
starfusion
arriba
PRB3--MTRNR2L12
starfusion
BMS1P7--AGAP13P
starfusion
GOLGA6L10--GOLGA2P6
starfusion
FBXO25--AL669831.1
starfusion
PCDHGB2--PCDHGC4
arriba
PCDHGB2--PCDHGC5
arriba
PCDHGB2--PCDHGB6
arriba
PCDHGB2--PCDHGA8
arriba
PCDHGB2--PCDHGC3
arriba
PCDHGB2--PCDHGB7
arriba
PCDHGB2--PCDHGA9
arriba
PCDHGB2--PCDHGA11
arriba
PCDHGB2--PCDHGA12
arriba
PCDHGB2--PCDHGA10
arriba
TVP23C--CDRT4
arriba
PCDHA6--PCDHA13
arriba
PCDHA6--PCDHAC1
arriba
PCDHA6--PCDHAC2
arriba
PCDHA4--PCDHAC2
arriba
PCDHA4--PCDHAC1
arriba
PCDHA4--PCDHA13
arriba
AC090572.2--CNBD1
arriba
0%| | 0/27 [00:00<?, ?it/s]
Processing MYB--NFIB: 0%| | 0/27 [00:00<?, ?it/s]
Processing MYB--NFIB: 4%|▎ | 1/27 [00:00<00:02, 9.22it/s]
Processing TLK2P1--AC110079.1: 4%|▎ | 1/27 [00:00<00:02, 9.22it/s]
Processing TLK2P1--AC110079.1: 7%|▋ | 2/27 [00:00<00:02, 9.46it/s]
Processing COL1A1--SLC45A4: 7%|▋ | 2/27 [00:00<00:02, 9.46it/s]
Processing COL1A1--SLC45A4: 11%|█ | 3/27 [00:00<00:02, 9.54it/s]
Processing TLK2--AC240565.1: 11%|█ | 3/27 [00:00<00:02, 9.54it/s]
Processing TLK2--AC240565.1: 15%|█▍ | 4/27 [00:00<00:02, 9.58it/s]
Processing STX16--NPEPL1: 15%|█▍ | 4/27 [00:00<00:02, 9.58it/s]
Processing STX16--NPEPL1: 19%|█▊ | 5/27 [00:00<00:02, 9.60it/s]
Processing PRB3--MTRNR2L12: 19%|█▊ | 5/27 [00:00<00:02, 9.60it/s]
Processing PRB3--MTRNR2L12: 22%|██▏ | 6/27 [00:00<00:02, 9.62it/s]
Processing BMS1P7--AGAP13P: 22%|██▏ | 6/27 [00:00<00:02, 9.62it/s]
Processing BMS1P7--AGAP13P: 26%|██▌ | 7/27 [00:00<00:02, 9.63it/s]
Processing GOLGA6L10--GOLGA2P6: 26%|██▌ | 7/27 [00:00<00:02, 9.63it/s]
Processing GOLGA6L10--GOLGA2P6: 30%|██▉ | 8/27 [00:00<00:01, 9.63it/s]
Processing FBXO25--AL669831.1: 30%|██▉ | 8/27 [00:00<00:01, 9.63it/s]
Processing FBXO25--AL669831.1: 33%|███▎ | 9/27 [00:00<00:01, 9.64it/s]
Processing PCDHGB2--PCDHGC4: 33%|███▎ | 9/27 [00:00<00:01, 9.64it/s]
Processing PCDHGB2--PCDHGC4: 37%|███▋ | 10/27 [00:01<00:01, 9.64it/s]
Processing PCDHGB2--PCDHGC5: 37%|███▋ | 10/27 [00:01<00:01, 9.64it/s]
Processing PCDHGB2--PCDHGC5: 41%|████ | 11/27 [00:01<00:01, 9.64it/s]
Processing PCDHGB2--PCDHGB6: 41%|████ | 11/27 [00:01<00:01, 9.64it/s]
Processing PCDHGB2--PCDHGB6: 44%|████▍ | 12/27 [00:01<00:01, 9.64it/s]
Processing PCDHGB2--PCDHGA8: 44%|████▍ | 12/27 [00:01<00:01, 9.64it/s]
Processing PCDHGB2--PCDHGA8: 48%|████▊ | 13/27 [00:01<00:01, 9.64it/s]
Processing PCDHGB2--PCDHGC3: 48%|████▊ | 13/27 [00:01<00:01, 9.64it/s]
Processing PCDHGB2--PCDHGC3: 52%|█████▏ | 14/27 [00:01<00:01, 9.64it/s]
Processing PCDHGB2--PCDHGB7: 52%|█████▏ | 14/27 [00:01<00:01, 9.64it/s]
Processing PCDHGB2--PCDHGB7: 56%|█████▌ | 15/27 [00:01<00:01, 9.64it/s]
Processing PCDHGB2--PCDHGA9: 56%|█████▌ | 15/27 [00:01<00:01, 9.64it/s]
Processing PCDHGB2--PCDHGA9: 59%|█████▉ | 16/27 [00:01<00:01, 9.64it/s]
Processing PCDHGB2--PCDHGA11: 59%|█████▉ | 16/27 [00:01<00:01, 9.64it/s]
Processing PCDHGB2--PCDHGA11: 63%|██████▎ | 17/27 [00:01<00:01, 9.64it/s]
Processing PCDHGB2--PCDHGA12: 63%|██████▎ | 17/27 [00:01<00:01, 9.64it/s]
Processing PCDHGB2--PCDHGA12: 67%|██████▋ | 18/27 [00:01<00:00, 9.64it/s]
Processing PCDHGB2--PCDHGA10: 67%|██████▋ | 18/27 [00:01<00:00, 9.64it/s]
Processing PCDHGB2--PCDHGA10: 70%|███████ | 19/27 [00:01<00:00, 9.64it/s]
Processing TVP23C--CDRT4: 70%|███████ | 19/27 [00:01<00:00, 9.64it/s]
Processing TVP23C--CDRT4: 74%|███████▍ | 20/27 [00:02<00:00, 9.65it/s]
Processing PCDHA6--PCDHA13: 74%|███████▍ | 20/27 [00:02<00:00, 9.65it/s]
Processing PCDHA6--PCDHA13: 78%|███████▊ | 21/27 [00:02<00:00, 9.65it/s]
Processing PCDHA6--PCDHAC1: 78%|███████▊ | 21/27 [00:02<00:00, 9.65it/s]
Processing PCDHA6--PCDHAC1: 81%|████████▏ | 22/27 [00:02<00:00, 9.65it/s]
Processing PCDHA6--PCDHAC2: 81%|████████▏ | 22/27 [00:02<00:00, 9.65it/s]
Processing PCDHA6--PCDHAC2: 85%|████████▌ | 23/27 [00:02<00:00, 9.65it/s]
Processing PCDHA4--PCDHAC2: 85%|████████▌ | 23/27 [00:02<00:00, 9.65it/s]
Processing PCDHA4--PCDHAC2: 89%|████████▉ | 24/27 [00:02<00:00, 9.64it/s]
Processing PCDHA4--PCDHAC1: 89%|████████▉ | 24/27 [00:02<00:00, 9.64it/s]
Processing PCDHA4--PCDHAC1: 93%|█████████▎| 25/27 [00:02<00:00, 9.64it/s]
Processing PCDHA4--PCDHA13: 93%|█████████▎| 25/27 [00:02<00:00, 9.64it/s]
Processing PCDHA4--PCDHA13: 96%|█████████▋| 26/27 [00:02<00:00, 9.64it/s]
Processing AC090572.2--CNBD1: 96%|█████████▋| 26/27 [00:02<00:00, 9.64it/s]
Processing AC090572.2--CNBD1: 100%|██████████| 27/27 [00:02<00:00, 9.64it/s]
Processing AC090572.2--CNBD1: 100%|██████████| 27/27 [00:02<00:00, 9.63it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory