Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-fe242a7f-c5b9-4d3f-88fa-f3e739280d3a/45/503758169673f6b79761b4db9d3b84/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0c/6519ad5518a0e0bd4ce875a1237308/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0c/6519ad5518a0e0bd4ce875a1237308/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/20/c9824b4e7bf344c425b1aaebce7061/1173_BEE_T1_RNA_SLD_01_A23T55JLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8e/bc47799a342dcc774ad19911323129/1173_BEE_T1_RNA_SLD_01_A23T55JLT4_1.arriba.fusions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...
MYB--NFIB
starfusion
arriba
TLK2P1--AC110079.1
starfusion
COL1A1--SLC45A4
starfusion
TLK2--AC240565.1
starfusion
STX16--NPEPL1
starfusion
arriba
PRB3--MTRNR2L12
starfusion
BMS1P7--AGAP13P
starfusion
GOLGA6L10--GOLGA2P6
starfusion
FBXO25--AL669831.1
starfusion
PCDHGB2--PCDHGC4
arriba
PCDHGB2--PCDHGC5
arriba
PCDHGB2--PCDHGB6
arriba
PCDHGB2--PCDHGA8
arriba
PCDHGB2--PCDHGC3
arriba
PCDHGB2--PCDHGB7
arriba
PCDHGB2--PCDHGA9
arriba
PCDHGB2--PCDHGA11
arriba
PCDHGB2--PCDHGA12
arriba
PCDHGB2--PCDHGA10
arriba
TVP23C--CDRT4
arriba
PCDHA6--PCDHA13
arriba
PCDHA6--PCDHAC1
arriba
PCDHA6--PCDHAC2
arriba
PCDHA4--PCDHAC2
arriba
PCDHA4--PCDHAC1
arriba
PCDHA4--PCDHA13
arriba
AC090572.2--CNBD1
arriba

  0%|          | 0/27 [00:00<?, ?it/s]
Processing MYB--NFIB:   0%|          | 0/27 [00:00<?, ?it/s]
Processing MYB--NFIB:   4%|▎         | 1/27 [00:00<00:02,  9.22it/s]
Processing TLK2P1--AC110079.1:   4%|▎         | 1/27 [00:00<00:02,  9.22it/s]
Processing TLK2P1--AC110079.1:   7%|▋         | 2/27 [00:00<00:02,  9.46it/s]
Processing COL1A1--SLC45A4:   7%|▋         | 2/27 [00:00<00:02,  9.46it/s]   
Processing COL1A1--SLC45A4:  11%|█         | 3/27 [00:00<00:02,  9.54it/s]
Processing TLK2--AC240565.1:  11%|█         | 3/27 [00:00<00:02,  9.54it/s]
Processing TLK2--AC240565.1:  15%|█▍        | 4/27 [00:00<00:02,  9.58it/s]
Processing STX16--NPEPL1:  15%|█▍        | 4/27 [00:00<00:02,  9.58it/s]   
Processing STX16--NPEPL1:  19%|█▊        | 5/27 [00:00<00:02,  9.60it/s]
Processing PRB3--MTRNR2L12:  19%|█▊        | 5/27 [00:00<00:02,  9.60it/s]
Processing PRB3--MTRNR2L12:  22%|██▏       | 6/27 [00:00<00:02,  9.62it/s]
Processing BMS1P7--AGAP13P:  22%|██▏       | 6/27 [00:00<00:02,  9.62it/s]
Processing BMS1P7--AGAP13P:  26%|██▌       | 7/27 [00:00<00:02,  9.63it/s]
Processing GOLGA6L10--GOLGA2P6:  26%|██▌       | 7/27 [00:00<00:02,  9.63it/s]
Processing GOLGA6L10--GOLGA2P6:  30%|██▉       | 8/27 [00:00<00:01,  9.63it/s]
Processing FBXO25--AL669831.1:  30%|██▉       | 8/27 [00:00<00:01,  9.63it/s] 
Processing FBXO25--AL669831.1:  33%|███▎      | 9/27 [00:00<00:01,  9.64it/s]
Processing PCDHGB2--PCDHGC4:  33%|███▎      | 9/27 [00:00<00:01,  9.64it/s]  
Processing PCDHGB2--PCDHGC4:  37%|███▋      | 10/27 [00:01<00:01,  9.64it/s]
Processing PCDHGB2--PCDHGC5:  37%|███▋      | 10/27 [00:01<00:01,  9.64it/s]
Processing PCDHGB2--PCDHGC5:  41%|████      | 11/27 [00:01<00:01,  9.64it/s]
Processing PCDHGB2--PCDHGB6:  41%|████      | 11/27 [00:01<00:01,  9.64it/s]
Processing PCDHGB2--PCDHGB6:  44%|████▍     | 12/27 [00:01<00:01,  9.64it/s]
Processing PCDHGB2--PCDHGA8:  44%|████▍     | 12/27 [00:01<00:01,  9.64it/s]
Processing PCDHGB2--PCDHGA8:  48%|████▊     | 13/27 [00:01<00:01,  9.64it/s]
Processing PCDHGB2--PCDHGC3:  48%|████▊     | 13/27 [00:01<00:01,  9.64it/s]
Processing PCDHGB2--PCDHGC3:  52%|█████▏    | 14/27 [00:01<00:01,  9.64it/s]
Processing PCDHGB2--PCDHGB7:  52%|█████▏    | 14/27 [00:01<00:01,  9.64it/s]
Processing PCDHGB2--PCDHGB7:  56%|█████▌    | 15/27 [00:01<00:01,  9.64it/s]
Processing PCDHGB2--PCDHGA9:  56%|█████▌    | 15/27 [00:01<00:01,  9.64it/s]
Processing PCDHGB2--PCDHGA9:  59%|█████▉    | 16/27 [00:01<00:01,  9.64it/s]
Processing PCDHGB2--PCDHGA11:  59%|█████▉    | 16/27 [00:01<00:01,  9.64it/s]
Processing PCDHGB2--PCDHGA11:  63%|██████▎   | 17/27 [00:01<00:01,  9.64it/s]
Processing PCDHGB2--PCDHGA12:  63%|██████▎   | 17/27 [00:01<00:01,  9.64it/s]
Processing PCDHGB2--PCDHGA12:  67%|██████▋   | 18/27 [00:01<00:00,  9.64it/s]
Processing PCDHGB2--PCDHGA10:  67%|██████▋   | 18/27 [00:01<00:00,  9.64it/s]
Processing PCDHGB2--PCDHGA10:  70%|███████   | 19/27 [00:01<00:00,  9.64it/s]
Processing TVP23C--CDRT4:  70%|███████   | 19/27 [00:01<00:00,  9.64it/s]    
Processing TVP23C--CDRT4:  74%|███████▍  | 20/27 [00:02<00:00,  9.65it/s]
Processing PCDHA6--PCDHA13:  74%|███████▍  | 20/27 [00:02<00:00,  9.65it/s]
Processing PCDHA6--PCDHA13:  78%|███████▊  | 21/27 [00:02<00:00,  9.65it/s]
Processing PCDHA6--PCDHAC1:  78%|███████▊  | 21/27 [00:02<00:00,  9.65it/s]
Processing PCDHA6--PCDHAC1:  81%|████████▏ | 22/27 [00:02<00:00,  9.65it/s]
Processing PCDHA6--PCDHAC2:  81%|████████▏ | 22/27 [00:02<00:00,  9.65it/s]
Processing PCDHA6--PCDHAC2:  85%|████████▌ | 23/27 [00:02<00:00,  9.65it/s]
Processing PCDHA4--PCDHAC2:  85%|████████▌ | 23/27 [00:02<00:00,  9.65it/s]
Processing PCDHA4--PCDHAC2:  89%|████████▉ | 24/27 [00:02<00:00,  9.64it/s]
Processing PCDHA4--PCDHAC1:  89%|████████▉ | 24/27 [00:02<00:00,  9.64it/s]
Processing PCDHA4--PCDHAC1:  93%|█████████▎| 25/27 [00:02<00:00,  9.64it/s]
Processing PCDHA4--PCDHA13:  93%|█████████▎| 25/27 [00:02<00:00,  9.64it/s]
Processing PCDHA4--PCDHA13:  96%|█████████▋| 26/27 [00:02<00:00,  9.64it/s]
Processing AC090572.2--CNBD1:  96%|█████████▋| 26/27 [00:02<00:00,  9.64it/s]
Processing AC090572.2--CNBD1: 100%|██████████| 27/27 [00:02<00:00,  9.64it/s]
Processing AC090572.2--CNBD1: 100%|██████████| 27/27 [00:02<00:00,  9.63it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory