Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0b/ca4d20e41802bc8c33ea65523f74cb/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3b/2dc14fdccc7cf7f3e61f315ae289a7/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3b/2dc14fdccc7cf7f3e61f315ae289a7/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2f/6b2d3a07bc430a92308b32c9c7a7ce/1173_DSO_T1_RNA_SLD_01_A23T55JLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4c/8fcadf45d128a9e6bb90f39fde2dfe/1173_DSO_T1_RNA_SLD_01_A23T55JLT4_1.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 231333235
[W::hts_idx_load3] The index file is older than the data file: 1173_DSO_T1_RNA_SLD_01_A23T55JLT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	231333235
Known Splicing Events:	229108116
Partial Novel Splicing Events:	1077819
Novel Splicing Events:	1085858
Filtered Splicing Events:	61442

Total splicing  Junctions:	453877
Known Splicing Junctions:	260042
Partial Novel Splicing Junctions:	120046
Novel Splicing Junctions:	73789

===================================================================
Create BED file ...
Create Interact file ...