Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2e/837e3355a88ecec1e2da865cf5cd11/1173_RPC_T1_RNA_SLD_01_A23T55JLT4_2.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/86/6a45aff2044edcdf85dfe19e940d72/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/86/6a45aff2044edcdf85dfe19e940d72/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/be/87aa403f3162403ab6862d04bc4829/1173_RPC_T1_RNA_SLD_01_A23T55JLT4_2.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (5 inputs)

ls: *.sam: No such file or directory
ls: *.csi: No such file or directory
ls: *.crai: No such file or directory