Lane,SampleID,Index,# Reads,# Perfect Index Reads,# One Mismatch Index Reads,# Two Mismatch Index Reads,% Reads,% Perfect Index Reads,% One Mismatch Index Reads,% Two Mismatch Index Reads
1,tih_rna_sample_00604_B23MVV7LT4_1,TAGCGAGG-TTGCTCAC,58925745,58130767,794978,0,0.0150,0.9865,0.0135,0.0000
1,tih_rna_sample_00612_B23MVV7LT4_1,CCAACTGT-GCGCTAGA,45807142,44940092,867050,0,0.0117,0.9811,0.0189,0.0000
1,tih_rna_sample_00613_B23MVV7LT4_1,GAGTAGTG-GCGATGCC,38667528,38106533,560995,0,0.0098,0.9855,0.0145,0.0000
1,tih_rna_sample_00614_B23MVV7LT4_1,CCAGTATT-ACGAAGCG,31525365,31061346,464019,0,0.0080,0.9853,0.0147,0.0000
1,tih_rna_sample_00616_B23MVV7LT4_1,ATCATACC-ATGTCGTA,42267264,41644526,622738,0,0.0108,0.9853,0.0147,0.0000
1,tih_rna_sample_00618_B23MVV7LT4_1,ATTCGCAC-TCTGTATG,48315051,47726022,589029,0,0.0123,0.9878,0.0122,0.0000
1,tih_rna_sample_00619_B23MVV7LT4_1,CTCTTCAG-TTGTCTCT,30262366,29848573,413793,0,0.0077,0.9863,0.0137,0.0000
1,tih_rna_sample_00622_B23MVV7LT4_1,CTGTATGC-TTCCGGCT,40501190,39999003,502187,0,0.0103,0.9876,0.0124,0.0000
1,tih_rna_sample_00624_B23MVV7LT4_1,TCTGACTA-TAACCAGA,27832312,27454386,377926,0,0.0071,0.9864,0.0136,0.0000
1,FFPE_HD789_01_RNA_13_B23MVV7LT4_1,TGTGACGT-GCAGCGTT,71958597,70851909,1106688,0,0.0183,0.9846,0.0154,0.0000
1,FFPE_V4_0002_RNA_0001_B23MVV7LT4_1,AGAAGATT-AGAAGGTA,24799242,24389504,409738,0,0.0063,0.9835,0.0165,0.0000
1,tih_rna_sample_00626_B23MVV7LT4_1,ATCCAGCA-AGAGCTCT,55804958,54790022,1014936,0,0.0142,0.9818,0.0182,0.0000
1,tih_rna_sample_00628_B23MVV7LT4_1,GCGCCATA-GAACCTCC,53636675,52729460,907215,0,0.0136,0.9831,0.0169,0.0000
1,tih_rna_sample_00629_B23MVV7LT4_1,CACTCGCA-GAACGCGA,45877770,45199354,678416,0,0.0117,0.9852,0.0148,0.0000
1,tih_rna_sample_00635_B23MVV7LT4_1,AAGGTCAA-GCATTATA,40849501,40249259,600242,0,0.0104,0.9853,0.0147,0.0000
1,tih_rna_sample_00636_B23MVV7LT4_1,GTGACGCA-CGTTGTTG,34805030,34268880,536150,0,0.0089,0.9846,0.0154,0.0000
1,tih_rna_sample_00637_B23MVV7LT4_1,TGTCAGGC-GATTCCTT,32474244,32038079,436165,0,0.0083,0.9866,0.0134,0.0000
1,tih_rna_sample_00638_B23MVV7LT4_1,CACGTGAT-TACAACGT,30362723,29887733,474990,0,0.0077,0.9844,0.0156,0.0000
1,tih_rna_sample_00639_B23MVV7LT4_1,CCATCACG-TCTCCTGG,42147706,41288995,858711,0,0.0107,0.9796,0.0204,0.0000
1,tih_rna_sample_00569_B23MVV7LT4_1,ACCAGGAA-AGCATGGC,49488218,48594287,893931,0,0.0126,0.9819,0.0181,0.0000
1,tih_rna_sample_00570_B23MVV7LT4_1,TAAGGCTC-GACGTTAC,40144041,39556978,587063,0,0.0102,0.9854,0.0146,0.0000
1,tih_rna_sample_00572_B23MVV7LT4_1,TGGCACTG-GCCATAGA,27645473,27232230,413243,0,0.0070,0.9851,0.0149,0.0000
1,tih_rna_sample_00574_B23MVV7LT4_1,CATATGGT-ACAGATCT,44301956,43655416,646540,0,0.0113,0.9854,0.0146,0.0000
1,tih_rna_sample_00575_B23MVV7LT4_1,GCACTACC-GAAGACTT,9633504,9420671,212833,0,0.0025,0.9779,0.0221,0.0000
1,tih_rna_sample_00576_B23MVV7LT4_1,GCATAAGA-GAGAACTG,23603442,23186538,416904,0,0.0060,0.9823,0.0177,0.0000
1,tih_rna_sample_00581_B23MVV7LT4_1,AAGGTGTA-AGCGCTAC,42793849,42095615,698234,0,0.0109,0.9837,0.0163,0.0000
1,tih_rna_sample_00582_B23MVV7LT4_1,CTTCTAAC-TGATCAGT,44574350,43935790,638560,0,0.0113,0.9857,0.0143,0.0000
1,tih_rna_sample_00583_B23MVV7LT4_1,TCGACCAG-GTTCGAAC,28362898,27947161,415737,0,0.0072,0.9853,0.0147,0.0000
1,tih_rna_sample_00584_B23MVV7LT4_1,GTGACACG-CTTACACT,4424332,4366496,57836,0,0.0011,0.9869,0.0131,0.0000
1,tih_rna_sample_00586_B23MVV7LT4_1,AATGGACG-AAGTGCAC,22810316,22412600,397716,0,0.0058,0.9826,0.0174,0.0000
1,tih_rna_sample_00588_B23MVV7LT4_1,TCTCCGTA-AGTTGTGA,43173201,42520068,653133,0,0.0110,0.9849,0.0151,0.0000
1,tih_rna_sample_00591_B23MVV7LT4_1,TGGAAGCA-TCCAACAC,37991923,37421238,570685,0,0.0097,0.9850,0.0150,0.0000
1,tih_rna_sample_00592_B23MVV7LT4_1,GATAGACA-GTGTTCAC,31011555,30558783,452772,0,0.0079,0.9854,0.0146,0.0000
1,tih_rna_sample_00594_B23MVV7LT4_1,AGCGTCTC-CCTAGGCG,58465979,55323007,3142972,0,0.0149,0.9462,0.0538,0.0000
1,tih_rna_sample_00596_B23MVV7LT4_1,CTCTATAC-CGTTCAAC,47713827,46753755,960072,0,0.0121,0.9799,0.0201,0.0000
1,tih_rna_sample_00598_B23MVV7LT4_1,ATAGCCGG-TCTTATCC,22230991,21760518,470473,0,0.0057,0.9788,0.0212,0.0000
1,tih_rna_sample_00599_B23MVV7LT4_1,GTTCTCAT-CCTCCATT,34817375,34350024,467351,0,0.0089,0.9866,0.0134,0.0000
1,tih_rna_sample_00602_B23MVV7LT4_1,CAATGCGT-ATGTTCGC,58596993,57662960,934033,0,0.0149,0.9841,0.0159,0.0000
1,tih_rna_sample_00676_B23MVV7LT4_1,TGAGTGTA-ATTCGCCG,42650757,41840871,809886,0,0.0108,0.9810,0.0190,0.0000
1,tih_rna_sample_00677_B23MVV7LT4_1,TGCTTCCA-CAGATGTT,2587583,2546498,41085,0,0.0007,0.9841,0.0159,0.0000
1,tih_rna_sample_00678_B23MVV7LT4_1,CCTACTCT-TGCAATTG,19367072,19098698,268374,0,0.0049,0.9861,0.0139,0.0000
1,tih_rna_sample_00679_B23MVV7LT4_1,TCGCTGAG-AATGCTCT,6503785,6360804,142981,0,0.0017,0.9780,0.0220,0.0000
1,tih_rna_sample_00680_B23MVV7LT4_1,CGCTAATT-CCATCGCA,48868602,48142481,726121,0,0.0124,0.9851,0.0149,0.0000
1,tih_rna_sample_00681_B23MVV7LT4_1,TCAGCTGT-ACAGCTCC,56446624,55490087,956537,0,0.0144,0.9831,0.0169,0.0000
1,tih_rna_sample_00685_B23MVV7LT4_1,AGACGACA-GAGCTGGA,17082897,16729826,353071,0,0.0043,0.9793,0.0207,0.0000
1,tih_rna_sample_00686_B23MVV7LT4_1,TAGGTCCA-TGCTCATC,40046655,38265053,1781602,0,0.0102,0.9555,0.0445,0.0000
1,tih_rna_sample_00690_B23MVV7LT4_1,TAACCTGA-TCAATTGA,26291589,25937236,354353,0,0.0067,0.9865,0.0135,0.0000
1,tih_rna_sample_00691_B23MVV7LT4_1,GATAGGTG-AGACGCAA,30710486,30008718,701768,0,0.0078,0.9771,0.0229,0.0000
1,tih_rna_sample_00692_B23MVV7LT4_1,CTTGTTAC-AATTCGGT,30122406,29691976,430430,0,0.0077,0.9857,0.0143,0.0000
1,tih_rna_sample_00693_B23MVV7LT4_1,TCACCGTG-TCGCTCTG,57166375,56270677,895698,0,0.0145,0.9843,0.0157,0.0000
1,tih_rna_sample_00694_B23MVV7LT4_1,CAACTACC-ATGCTGCA,31099513,30612609,486904,0,0.0079,0.9843,0.0157,0.0000
1,tih_rna_sample_00699_B23MVV7LT4_1,ACTCGTCC-TGGTCCTC,62104804,61141288,963516,0,0.0158,0.9845,0.0155,0.0000
1,tih_rna_sample_00701_B23MVV7LT4_1,TCCGGAGA-ATTCCTCT,54333289,53439863,893426,0,0.0138,0.9836,0.0164,0.0000
1,tih_rna_sample_00703_B23MVV7LT4_1,TTGTGAGA-TTCACTGG,18314588,18048643,265945,0,0.0047,0.9855,0.0145,0.0000
1,tih_rna_sample_00704_B23MVV7LT4_1,CCGAAGGT-TCTATCTG,62433252,61656159,777093,0,0.0159,0.9876,0.0124,0.0000
1,tih_rna_sample_00709_B23MVV7LT4_1,ATACACAC-AGTGTGAT,31042014,30563309,478705,0,0.0079,0.9846,0.0154,0.0000
1,tih_rna_sample_00641_B23MVV7LT4_1,AGCCTCTG-TTCGCCTT,54906702,53351682,1555020,0,0.0140,0.9717,0.0283,0.0000
1,tih_rna_sample_00643_B23MVV7LT4_1,CGGATCAT-CCGTAACC,26996858,26489590,507268,0,0.0069,0.9812,0.0188,0.0000
1,tih_rna_sample_00644_B23MVV7LT4_1,CTCTCTCT-ACTTGATT,41330217,40576901,753316,0,0.0105,0.9818,0.0182,0.0000
1,tih_rna_sample_00649_B23MVV7LT4_1,AAGGCTCC-TGAAGATG,62200963,61352211,848752,0,0.0158,0.9864,0.0136,0.0000
1,tih_rna_sample_00650_B23MVV7LT4_1,GATAGATC-CGTACGCC,45967353,45208902,758451,0,0.0117,0.9835,0.0165,0.0000
1,tih_rna_sample_00652_B23MVV7LT4_1,GCAGAAGT-CTGCGTCG,40662058,40086941,575117,0,0.0103,0.9859,0.0141,0.0000
1,tih_rna_sample_00654_B23MVV7LT4_1,TATACGAT-CTCCTAAT,46848627,46017935,830692,0,0.0119,0.9823,0.0177,0.0000
1,tih_rna_sample_00658_B23MVV7LT4_1,AACGCTCT-GAGTAACG,28701097,28261252,439845,0,0.0073,0.9847,0.0153,0.0000
1,tih_rna_sample_00660_B23MVV7LT4_1,GATTGGCG-CTGTCTCA,31544314,30913984,630330,0,0.0080,0.9800,0.0200,0.0000
1,tih_rna_sample_00664_B23MVV7LT4_1,CAAGACGG-GTACTCCG,33091884,32609931,481953,0,0.0084,0.9854,0.0146,0.0000
1,tih_rna_sample_00665_B23MVV7LT4_1,CCACTCAA-CCTGTCTA,52680479,51735503,944976,0,0.0134,0.9821,0.0179,0.0000
1,tih_rna_sample_00666_B23MVV7LT4_1,AGCCACTC-CCAAGAGG,28570344,25393194,3177150,0,0.0073,0.8888,0.1112,0.0000
1,tih_rna_sample_00667_B23MVV7LT4_1,GCGAAGAA-TCACGGAT,16327431,16060558,266873,0,0.0042,0.9837,0.0163,0.0000
1,tih_rna_sample_00668_B23MVV7LT4_1,TGTCGGTG-AGTTCTTC,73759660,72685224,1074436,0,0.0188,0.9854,0.0146,0.0000
1,tih_rna_sample_00669_B23MVV7LT4_1,TCTACAGC-AATGGAAG,34014347,33503461,510886,0,0.0087,0.9850,0.0150,0.0000
1,tih_rna_sample_00671_B23MVV7LT4_1,CAACCATG-ATAAGGTG,46558831,45912320,646511,0,0.0118,0.9861,0.0139,0.0000
1,tih_rna_sample_00673_B23MVV7LT4_1,CGCACATT-TGGAACGT,39746743,39198651,548092,0,0.0101,0.9862,0.0138,0.0000
1,tih_rna_sample_00711_B23MVV7LT4_1,ATCTAACC-CCTGTGGT,69950169,68691488,1258681,0,0.0178,0.9820,0.0180,0.0000
1,tih_rna_sample_00714_B23MVV7LT4_1,GCGACAAT-ATTCGTAC,54082580,53256860,825720,0,0.0138,0.9847,0.0153,0.0000
1,tih_rna_sample_00721_B23MVV7LT4_1,TTGCCGTA-ACATTAGC,57587568,56664960,922608,0,0.0146,0.9840,0.0160,0.0000
1,tih_rna_sample_00722_B23MVV7LT4_1,GATCCACT-GTGTTCTG,14891588,14679805,211783,0,0.0038,0.9858,0.0142,0.0000
1,tih_rna_sample_00723_B23MVV7LT4_1,TCCGAGAT-TGTCACCT,5712340,5451651,260689,0,0.0015,0.9544,0.0456,0.0000
1,tih_rna_sample_00725_B23MVV7LT4_1,ATAGAGTT-GCATAACG,48287071,47496278,790793,0,0.0123,0.9836,0.0164,0.0000
1,tih_rna_sample_00729_B23MVV7LT4_1,GCATTCCT-GAGCCTGC,43588216,35755419,7832797,0,0.0111,0.8203,0.1797,0.0000
1,tih_rna_sample_00730_B23MVV7LT4_1,AATCGTGC-GTTCAGTA,54644104,53827063,817041,0,0.0139,0.9850,0.0150,0.0000
1,tih_rna_sample_00731_B23MVV7LT4_1,TACCGGAG-CTTAGCAG,42663571,42052506,611065,0,0.0109,0.9857,0.0143,0.0000
1,tih_rna_sample_00736_B23MVV7LT4_1,AGCACCAG-CTCGTGTA,41939639,41156514,783125,0,0.0107,0.9813,0.0187,0.0000
1,tih_rna_sample_00737_B23MVV7LT4_1,TACCTAGA-GCATTCGA,34560132,33913608,646524,0,0.0088,0.9813,0.0187,0.0000
1,tih_rna_sample_00739_B23MVV7LT4_1,CAGACTGC-ACCGGCCT,66415013,63886899,2528114,0,0.0169,0.9619,0.0381,0.0000
1,tih_rna_sample_00740_B23MVV7LT4_1,GTTAGTGC-CTGCATAG,45566972,44968868,598104,0,0.0116,0.9869,0.0131,0.0000
1,tih_rna_sample_00742_B23MVV7LT4_1,CGCAATAA-CCTACAGC,20899732,20523496,376236,0,0.0053,0.9820,0.0180,0.0000
1,tih_rna_sample_00754_B23MVV7LT4_1,TCGGTCTG-TGGTTGGT,27121472,26777906,343566,0,0.0069,0.9873,0.0127,0.0000
1,tih_rna_sample_00755_B23MVV7LT4_1,CTAGACGA-GAGGATGG,48246441,47512407,734034,0,0.0123,0.9848,0.0152,0.0000
1,tih_rna_sample_00758_B23MVV7LT4_1,GTAATACT-CTCACGAA,43726689,41684398,2042291,0,0.0111,0.9533,0.0467,0.0000
1,tih_rna_sample_00760_B23MVV7LT4_1,GATTCTTA-TGCTAGCG,29935217,29525557,409660,0,0.0076,0.9863,0.0137,0.0000
1,tih_rna_sample_00761_B23MVV7LT4_1,TGTGATCG-AGACGAGT,9370689,9177056,193633,0,0.0024,0.9793,0.0207,0.0000
1,tih_rna_sample_00762_B23MVV7LT4_1,ATCGAGAG-TGGAAGCA,36143322,35627062,516260,0,0.0092,0.9857,0.0143,0.0000
1,tih_rna_sample_00763_B23MVV7LT4_1,CTGAACGT-GCCAATAC,36119996,35604334,515662,0,0.0092,0.9857,0.0143,0.0000
1,tih_rna_sample_00764_B23MVV7LT4_1,CACTAGAC-TGTGGATT,30557181,30134294,422887,0,0.0078,0.9862,0.0138,0.0000
1,tih_rna_sample_00766_B23MVV7LT4_1,CGTCGCCT-TATCTTCT,25392148,24170437,1221711,0,0.0065,0.9519,0.0481,0.0000
1,Undetermined,,233947699,233947699,0,0,0.0595,1.0000,0.0000,0.0000