Lane,SampleID,Index,# Reads,# Perfect Index Reads,# One Mismatch Index Reads,# Two Mismatch Index Reads,% Reads,% Perfect Index Reads,% One Mismatch Index Reads,% Two Mismatch Index Reads
2,tih_rna_sample_00604_B23MVV7LT4_1,TAGCGAGG-TTGCTCAC,59710257,58894707,815550,0,0.0150,0.9863,0.0137,0.0000
2,tih_rna_sample_00612_B23MVV7LT4_1,CCAACTGT-GCGCTAGA,46381084,45498273,882811,0,0.0116,0.9810,0.0190,0.0000
2,tih_rna_sample_00613_B23MVV7LT4_1,GAGTAGTG-GCGATGCC,39287181,38710986,576195,0,0.0098,0.9853,0.0147,0.0000
2,tih_rna_sample_00614_B23MVV7LT4_1,CCAGTATT-ACGAAGCG,32040152,31560844,479308,0,0.0080,0.9850,0.0150,0.0000
2,tih_rna_sample_00616_B23MVV7LT4_1,ATCATACC-ATGTCGTA,42855757,42214529,641228,0,0.0107,0.9850,0.0150,0.0000
2,tih_rna_sample_00618_B23MVV7LT4_1,ATTCGCAC-TCTGTATG,49138669,48532988,605681,0,0.0123,0.9877,0.0123,0.0000
2,tih_rna_sample_00619_B23MVV7LT4_1,CTCTTCAG-TTGTCTCT,30721433,30283888,437545,0,0.0077,0.9858,0.0142,0.0000
2,tih_rna_sample_00622_B23MVV7LT4_1,CTGTATGC-TTCCGGCT,41119076,40602350,516726,0,0.0103,0.9874,0.0126,0.0000
2,tih_rna_sample_00624_B23MVV7LT4_1,TCTGACTA-TAACCAGA,28159502,27771886,387616,0,0.0071,0.9862,0.0138,0.0000
2,FFPE_HD789_01_RNA_13_B23MVV7LT4_1,TGTGACGT-GCAGCGTT,72841721,71713191,1128530,0,0.0183,0.9845,0.0155,0.0000
2,FFPE_V4_0002_RNA_0001_B23MVV7LT4_1,AGAAGATT-AGAAGGTA,25185456,24764727,420729,0,0.0063,0.9833,0.0167,0.0000
2,tih_rna_sample_00626_B23MVV7LT4_1,ATCCAGCA-AGAGCTCT,56324605,55239563,1085042,0,0.0141,0.9807,0.0193,0.0000
2,tih_rna_sample_00628_B23MVV7LT4_1,GCGCCATA-GAACCTCC,54679275,53743067,936208,0,0.0137,0.9829,0.0171,0.0000
2,tih_rna_sample_00629_B23MVV7LT4_1,CACTCGCA-GAACGCGA,46733058,46031919,701139,0,0.0117,0.9850,0.0150,0.0000
2,tih_rna_sample_00635_B23MVV7LT4_1,AAGGTCAA-GCATTATA,41427430,40811932,615498,0,0.0104,0.9851,0.0149,0.0000
2,tih_rna_sample_00636_B23MVV7LT4_1,GTGACGCA-CGTTGTTG,35304009,34753982,550027,0,0.0088,0.9844,0.0156,0.0000
2,tih_rna_sample_00637_B23MVV7LT4_1,TGTCAGGC-GATTCCTT,32997229,32548994,448235,0,0.0083,0.9864,0.0136,0.0000
2,tih_rna_sample_00638_B23MVV7LT4_1,CACGTGAT-TACAACGT,30763099,30276114,486985,0,0.0077,0.9842,0.0158,0.0000
2,tih_rna_sample_00639_B23MVV7LT4_1,CCATCACG-TCTCCTGG,42835501,41942501,893000,0,0.0107,0.9792,0.0208,0.0000
2,tih_rna_sample_00569_B23MVV7LT4_1,ACCAGGAA-AGCATGGC,50187067,49269536,917531,0,0.0126,0.9817,0.0183,0.0000
2,tih_rna_sample_00570_B23MVV7LT4_1,TAAGGCTC-GACGTTAC,40888725,40285035,603690,0,0.0102,0.9852,0.0148,0.0000
2,tih_rna_sample_00572_B23MVV7LT4_1,TGGCACTG-GCCATAGA,28100490,27677080,423410,0,0.0070,0.9849,0.0151,0.0000
2,tih_rna_sample_00574_B23MVV7LT4_1,CATATGGT-ACAGATCT,44839659,44175148,664511,0,0.0112,0.9852,0.0148,0.0000
2,tih_rna_sample_00575_B23MVV7LT4_1,GCACTACC-GAAGACTT,9755819,9536022,219797,0,0.0024,0.9775,0.0225,0.0000
2,tih_rna_sample_00576_B23MVV7LT4_1,GCATAAGA-GAGAACTG,24016582,23585693,430889,0,0.0060,0.9821,0.0179,0.0000
2,tih_rna_sample_00581_B23MVV7LT4_1,AAGGTGTA-AGCGCTAC,43388485,42667328,721157,0,0.0109,0.9834,0.0166,0.0000
2,tih_rna_sample_00582_B23MVV7LT4_1,CTTCTAAC-TGATCAGT,45110987,44454114,656873,0,0.0113,0.9854,0.0146,0.0000
2,tih_rna_sample_00583_B23MVV7LT4_1,TCGACCAG-GTTCGAAC,28886748,28456393,430355,0,0.0072,0.9851,0.0149,0.0000
2,tih_rna_sample_00584_B23MVV7LT4_1,GTGACACG-CTTACACT,4494518,4435107,59411,0,0.0011,0.9868,0.0132,0.0000
2,tih_rna_sample_00586_B23MVV7LT4_1,AATGGACG-AAGTGCAC,23048969,22643107,405862,0,0.0058,0.9824,0.0176,0.0000
2,tih_rna_sample_00588_B23MVV7LT4_1,TCTCCGTA-AGTTGTGA,43662495,42991350,671145,0,0.0109,0.9846,0.0154,0.0000
2,tih_rna_sample_00591_B23MVV7LT4_1,TGGAAGCA-TCCAACAC,38682031,38095231,586800,0,0.0097,0.9848,0.0152,0.0000
2,tih_rna_sample_00592_B23MVV7LT4_1,GATAGACA-GTGTTCAC,31483771,31020707,463064,0,0.0079,0.9853,0.0147,0.0000
2,tih_rna_sample_00594_B23MVV7LT4_1,AGCGTCTC-CCTAGGCG,59409696,56208888,3200808,0,0.0149,0.9461,0.0539,0.0000
2,tih_rna_sample_00596_B23MVV7LT4_1,CTCTATAC-CGTTCAAC,48260370,47271095,989275,0,0.0121,0.9795,0.0205,0.0000
2,tih_rna_sample_00598_B23MVV7LT4_1,ATAGCCGG-TCTTATCC,22601898,22117322,484576,0,0.0057,0.9786,0.0214,0.0000
2,tih_rna_sample_00599_B23MVV7LT4_1,GTTCTCAT-CCTCCATT,35439887,34954881,485006,0,0.0089,0.9863,0.0137,0.0000
2,tih_rna_sample_00602_B23MVV7LT4_1,CAATGCGT-ATGTTCGC,59384325,58428809,955516,0,0.0149,0.9839,0.0161,0.0000
2,tih_rna_sample_00676_B23MVV7LT4_1,TGAGTGTA-ATTCGCCG,43308845,42481010,827835,0,0.0109,0.9809,0.0191,0.0000
2,tih_rna_sample_00677_B23MVV7LT4_1,TGCTTCCA-CAGATGTT,2621057,2578431,42626,0,0.0007,0.9837,0.0163,0.0000
2,tih_rna_sample_00678_B23MVV7LT4_1,CCTACTCT-TGCAATTG,19666781,19390533,276248,0,0.0049,0.9860,0.0140,0.0000
2,tih_rna_sample_00679_B23MVV7LT4_1,TCGCTGAG-AATGCTCT,6589054,6440710,148344,0,0.0017,0.9775,0.0225,0.0000
2,tih_rna_sample_00680_B23MVV7LT4_1,CGCTAATT-CCATCGCA,49602635,48855820,746815,0,0.0124,0.9849,0.0151,0.0000
2,tih_rna_sample_00681_B23MVV7LT4_1,TCAGCTGT-ACAGCTCC,57135823,56156098,979725,0,0.0143,0.9829,0.0171,0.0000
2,tih_rna_sample_00685_B23MVV7LT4_1,AGACGACA-GAGCTGGA,17319185,16959289,359896,0,0.0043,0.9792,0.0208,0.0000
2,tih_rna_sample_00686_B23MVV7LT4_1,TAGGTCCA-TGCTCATC,40646013,38856666,1789347,0,0.0102,0.9560,0.0440,0.0000
2,tih_rna_sample_00690_B23MVV7LT4_1,TAACCTGA-TCAATTGA,26686876,26322186,364690,0,0.0067,0.9863,0.0137,0.0000
2,tih_rna_sample_00691_B23MVV7LT4_1,GATAGGTG-AGACGCAA,31174363,30460821,713542,0,0.0078,0.9771,0.0229,0.0000
2,tih_rna_sample_00692_B23MVV7LT4_1,CTTGTTAC-AATTCGGT,30557134,30114322,442812,0,0.0077,0.9855,0.0145,0.0000
2,tih_rna_sample_00693_B23MVV7LT4_1,TCACCGTG-TCGCTCTG,58052632,57133635,918997,0,0.0145,0.9842,0.0158,0.0000
2,tih_rna_sample_00694_B23MVV7LT4_1,CAACTACC-ATGCTGCA,31603283,31101257,502026,0,0.0079,0.9841,0.0159,0.0000
2,tih_rna_sample_00699_B23MVV7LT4_1,ACTCGTCC-TGGTCCTC,62909021,61917274,991747,0,0.0158,0.9842,0.0158,0.0000
2,tih_rna_sample_00701_B23MVV7LT4_1,TCCGGAGA-ATTCCTCT,55184324,54253764,930560,0,0.0138,0.9831,0.0169,0.0000
2,tih_rna_sample_00703_B23MVV7LT4_1,TTGTGAGA-TTCACTGG,18591140,18318010,273130,0,0.0047,0.9853,0.0147,0.0000
2,tih_rna_sample_00704_B23MVV7LT4_1,CCGAAGGT-TCTATCTG,63470964,62670072,800892,0,0.0159,0.9874,0.0126,0.0000
2,tih_rna_sample_00709_B23MVV7LT4_1,ATACACAC-AGTGTGAT,31452999,30959740,493259,0,0.0079,0.9843,0.0157,0.0000
2,tih_rna_sample_00641_B23MVV7LT4_1,AGCCTCTG-TTCGCCTT,55612100,54009431,1602669,0,0.0139,0.9712,0.0288,0.0000
2,tih_rna_sample_00643_B23MVV7LT4_1,CGGATCAT-CCGTAACC,27427447,26904730,522717,0,0.0069,0.9809,0.0191,0.0000
2,tih_rna_sample_00644_B23MVV7LT4_1,CTCTCTCT-ACTTGATT,41905576,41124823,780753,0,0.0105,0.9814,0.0186,0.0000
2,tih_rna_sample_00649_B23MVV7LT4_1,AAGGCTCC-TGAAGATG,63141607,62262664,878943,0,0.0158,0.9861,0.0139,0.0000
2,tih_rna_sample_00650_B23MVV7LT4_1,GATAGATC-CGTACGCC,46699369,45921122,778247,0,0.0117,0.9833,0.0167,0.0000
2,tih_rna_sample_00652_B23MVV7LT4_1,GCAGAAGT-CTGCGTCG,41284787,40691913,592874,0,0.0103,0.9856,0.0144,0.0000
2,tih_rna_sample_00654_B23MVV7LT4_1,TATACGAT-CTCCTAAT,47486557,46609986,876571,0,0.0119,0.9815,0.0185,0.0000
2,tih_rna_sample_00658_B23MVV7LT4_1,AACGCTCT-GAGTAACG,29090020,28637356,452664,0,0.0073,0.9844,0.0156,0.0000
2,tih_rna_sample_00660_B23MVV7LT4_1,GATTGGCG-CTGTCTCA,31993707,31333275,660432,0,0.0080,0.9794,0.0206,0.0000
2,tih_rna_sample_00664_B23MVV7LT4_1,CAAGACGG-GTACTCCG,33690584,33195193,495391,0,0.0084,0.9853,0.0147,0.0000
2,tih_rna_sample_00665_B23MVV7LT4_1,CCACTCAA-CCTGTCTA,53301362,52334477,966885,0,0.0134,0.9819,0.0181,0.0000
2,tih_rna_sample_00666_B23MVV7LT4_1,AGCCACTC-CCAAGAGG,29003127,25723213,3279914,0,0.0073,0.8869,0.1131,0.0000
2,tih_rna_sample_00667_B23MVV7LT4_1,GCGAAGAA-TCACGGAT,16604099,16329468,274631,0,0.0042,0.9835,0.0165,0.0000
2,tih_rna_sample_00668_B23MVV7LT4_1,TGTCGGTG-AGTTCTTC,74804586,73695765,1108821,0,0.0187,0.9852,0.0148,0.0000
2,tih_rna_sample_00669_B23MVV7LT4_1,TCTACAGC-AATGGAAG,34522951,33996930,526021,0,0.0086,0.9848,0.0152,0.0000
2,tih_rna_sample_00671_B23MVV7LT4_1,CAACCATG-ATAAGGTG,47204681,46539468,665213,0,0.0118,0.9859,0.0141,0.0000
2,tih_rna_sample_00673_B23MVV7LT4_1,CGCACATT-TGGAACGT,40403444,39839416,564028,0,0.0101,0.9860,0.0140,0.0000
2,tih_rna_sample_00711_B23MVV7LT4_1,ATCTAACC-CCTGTGGT,70888433,69595504,1292929,0,0.0178,0.9818,0.0182,0.0000
2,tih_rna_sample_00714_B23MVV7LT4_1,GCGACAAT-ATTCGTAC,54863360,54014458,848902,0,0.0137,0.9845,0.0155,0.0000
2,tih_rna_sample_00721_B23MVV7LT4_1,TTGCCGTA-ACATTAGC,58200266,57250904,949362,0,0.0146,0.9837,0.0163,0.0000
2,tih_rna_sample_00722_B23MVV7LT4_1,GATCCACT-GTGTTCTG,15132804,14914158,218646,0,0.0038,0.9856,0.0144,0.0000
2,tih_rna_sample_00723_B23MVV7LT4_1,TCCGAGAT-TGTCACCT,5788726,5516231,272495,0,0.0015,0.9529,0.0471,0.0000
2,tih_rna_sample_00725_B23MVV7LT4_1,ATAGAGTT-GCATAACG,48930530,48121519,809011,0,0.0123,0.9835,0.0165,0.0000
2,tih_rna_sample_00729_B23MVV7LT4_1,GCATTCCT-GAGCCTGC,44410215,36263210,8147005,0,0.0111,0.8166,0.1834,0.0000
2,tih_rna_sample_00730_B23MVV7LT4_1,AATCGTGC-GTTCAGTA,55314556,54481780,832776,0,0.0139,0.9849,0.0151,0.0000
2,tih_rna_sample_00731_B23MVV7LT4_1,TACCGGAG-CTTAGCAG,43411267,42781875,629392,0,0.0109,0.9855,0.0145,0.0000
2,tih_rna_sample_00736_B23MVV7LT4_1,AGCACCAG-CTCGTGTA,42637717,41811890,825827,0,0.0107,0.9806,0.0194,0.0000
2,tih_rna_sample_00737_B23MVV7LT4_1,TACCTAGA-GCATTCGA,35207136,34535418,671718,0,0.0088,0.9809,0.0191,0.0000
2,tih_rna_sample_00739_B23MVV7LT4_1,CAGACTGC-ACCGGCCT,67448682,64838025,2610657,0,0.0169,0.9613,0.0387,0.0000
2,tih_rna_sample_00740_B23MVV7LT4_1,GTTAGTGC-CTGCATAG,46305116,45688264,616852,0,0.0116,0.9867,0.0133,0.0000
2,tih_rna_sample_00742_B23MVV7LT4_1,CGCAATAA-CCTACAGC,21270063,20874519,395544,0,0.0053,0.9814,0.0186,0.0000
2,tih_rna_sample_00754_B23MVV7LT4_1,TCGGTCTG-TGGTTGGT,27540951,27189591,351360,0,0.0069,0.9872,0.0128,0.0000
2,tih_rna_sample_00755_B23MVV7LT4_1,CTAGACGA-GAGGATGG,49028103,48270759,757344,0,0.0123,0.9846,0.0154,0.0000
2,tih_rna_sample_00758_B23MVV7LT4_1,GTAATACT-CTCACGAA,44265135,42139449,2125686,0,0.0111,0.9520,0.0480,0.0000
2,tih_rna_sample_00760_B23MVV7LT4_1,GATTCTTA-TGCTAGCG,30395378,29973076,422302,0,0.0076,0.9861,0.0139,0.0000
2,tih_rna_sample_00761_B23MVV7LT4_1,TGTGATCG-AGACGAGT,9468641,9270012,198629,0,0.0024,0.9790,0.0210,0.0000
2,tih_rna_sample_00762_B23MVV7LT4_1,ATCGAGAG-TGGAAGCA,36590347,36057632,532715,0,0.0092,0.9854,0.0146,0.0000
2,tih_rna_sample_00763_B23MVV7LT4_1,CTGAACGT-GCCAATAC,36727897,36196537,531360,0,0.0092,0.9855,0.0145,0.0000
2,tih_rna_sample_00764_B23MVV7LT4_1,CACTAGAC-TGTGGATT,30987827,30551265,436562,0,0.0078,0.9859,0.0141,0.0000
2,tih_rna_sample_00766_B23MVV7LT4_1,CGTCGCCT-TATCTTCT,25742369,24490776,1251593,0,0.0064,0.9514,0.0486,0.0000
2,Undetermined,,239773877,239773877,0,0,0.0601,1.0000,0.0000,0.0000