multiqc_general_stats_controls.tsv

Filename: multiqc_general_stats_controls.tsv
Full Path: s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0017/B23MVV7LT4/nfcore_rnafusion__73d51683--20260607-225254/QC/multiqc/multiqc_data/multiqc_general_stats_controls.tsv
Size: 1.4 KB
Workflow Run: dev_rna_exp0017-73d51683
Published: Jun 08, 2026 5:53 AM

sample_id	AFTER_FILTERING_Q30_RATE	CONTAMINATION_PCT	FRAC_ANTISENSE	FRAC_UNMAPPED	FRAGMENT_LENGTH_MEAN	FRAGMENT_LENGTH_MEDIAN	IS_CONTAMINATED	N_Q30	PERCENT_DUPLICATION	PCT_MITO_EST_COUNTS	MITOCHONDRIAL_CONTAMINATION	SCORE_LOG2TPM1_MEAN_CHRY_SIGNATURE	UNIQUE_READS_RSEQC	UNIQUELY_MAPPED_PERCENT	GC_BIAS	PCT_ADAPTER	PCT_DUPLICATION	PCT_HK_EST_COUNTS	PCT_HK_TPM	PCT_MALE_EST_COUNTS	PCT_MALE_TPM	PCT_RIBO_EST_COUNTS	RIBOSOMAL_CONTAMINATION	PCT_SURVIVING	PERCENT_GC	READS	MAPPED_READS	AVG_SEQUENCE_LENGTH	PERCENT_DUPLICATES	PERCENT_FAILS	TOTAL_SEQUENCES	FRAC_BASES_GT30X	FRAC_READS_OFF_TARGET	FRAC_READS_ON_TARGET	MEAN_DEPTH	Q50_DEPTH	FRAC_BASES_GT100X	FRAC_PAIRS_OFF_TARGET	FRAC_PAIRS_ON_TARGET	PAIRS_OFF_TARGET	PAIRS_ON_TARGET	READS_OFF_TARGET	READS_ON_TARGET	EXPECTED_DISTINCT	FRAC_DUPES	UNIQUE_READS	TOTAL_READS	AFTER_FILTERING_GC_CONTENT	AFTER_FILTERING_Q30_BASES	FILTERING_RESULT_PASSED_FILTER_READS	FRAGMENT_LENGTH	MEDIAN_SEQUENCE_LENGTH	PERCENT_ALIGNED	PROPER_PAIRS_PERCENT	PSEUDOALIGNED_READS
FFPE_HD789_01_RNA_13_B23MVV7LT4_1	0.979778	61.91	0.936	0.004458	181.4	163.0	Yes	0.980501	0.445589	0.008	0.016	3.918	575729781.0	96.4	0.0	35.22453683333333	35.8155	0.707	1.03	0.0	0.0	1.78	5.231	98.78779166666666		592726750.0	285699351.0					0.715069	0.045324	0.946664	696.209103	280.0	0.617997	0.023564	0.976436	3823530.0	158438905.0	14947354.0	312201833.0	469677104.0	0.443603	329791654.0	9999000000.0	0.548872	80421149133.0	592726750.0				91.30115381834158

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