File Info
- Filename
- run_level_intermediate.tsv
- Full Path
- s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0017/B23MVV7LT4/nfcore_rnafusion__73d51683--20260607-225254/QC_run_metrics/intermediate/run_level_intermediate.tsv
- Size
- 2.5 KB
- Workflow Run
- dev_rna_exp0017-73d51683
- Published
- Jun 08, 2026 5:54 AM
Content
View in new tab| SAMPLE_ID | SOURCE_QC | ANALYTE | PIPELINE_VERSION | QC_METRIC | VALUE | METRIC_ORIGIN |
| RUN | RNA | rnafusion_3.0.2-gunknown | CLUSTER_DENSITY | 9457.29 | bclconvert | |
| RUN | RNA | rnafusion_3.0.2-gunknown | READS_PASSING_FILTER_PERCENT | 78.4101 | bclconvert | |
| RUN | RNA | rnafusion_3.0.2-gunknown | Q30_RUN_WIDE_PERCENT | 94.8613 | bclconvert | |
| RUN | RNA | rnafusion_3.0.2-gunknown | OCCUPANCY_RATE | 87.3541 | bclconvert | |
| RUN | RNA | rnafusion_3.0.2-gunknown | YIELD_IN_GB | 9659.856355546 | bclconvert | |
| FFPE_HD789_01_RNA_13_B23MVV7LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | READS | 588330520 | bclconvert |
| FFPE_HD789_01_RNA_13_B23MVV7LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | READS_SEQTOOLS | 592726750.0 | seqtools |
| FFPE_HD789_01_RNA_13_B23MVV7LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | FRAC_READS_ON_TARGET | 0.946664 | seqtools |
| FFPE_HD789_01_RNA_13_B23MVV7LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | FRAC_PAIRS_ON_TARGET | 0.976436 | seqtools |
| FFPE_HD789_01_RNA_13_B23MVV7LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | FRAC_READS_OFF_TARGET | 0.045324 | seqtools |
| FFPE_HD789_01_RNA_13_B23MVV7LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | FRAC_PAIRS_OFF_TARGET | 0.023564 | seqtools |
| FFPE_HD789_01_RNA_13_B23MVV7LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | READS_ON_TARGET | 312201833.0 | seqtools |
| FFPE_HD789_01_RNA_13_B23MVV7LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | PAIRS_ON_TARGET | 158438905.0 | seqtools |
| FFPE_HD789_01_RNA_13_B23MVV7LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | READS_OFF_TARGET | 14947354.0 | seqtools |
| FFPE_HD789_01_RNA_13_B23MVV7LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | PAIRS_OFF_TARGET | 3823530.0 | seqtools |
| FFPE_HD789_01_RNA_13_B23MVV7LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | GC_BIAS | 0.0 | seqtools |
| FFPE_HD789_01_RNA_13_B23MVV7LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | MAPPED_READS | 285699351.0 | star |
| FFPE_HD789_01_RNA_13_B23MVV7LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | FRAC_UNMAPPED | 0.004458 | star |
| FFPE_HD789_01_RNA_13_B23MVV7LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | FRAGMENT_LENGTH_MEDIAN | 163.0 | kallisto |
| FFPE_HD789_01_RNA_13_B23MVV7LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | MITOCHONDRIAL_CONTAMINATION | 0.016 | kallisto |
| FFPE_HD789_01_RNA_13_B23MVV7LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | RIBOSOMAL_CONTAMINATION | 5.231 | kallisto |
| FFPE_HD789_01_RNA_13_B23MVV7LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | PCT_CONTAMINATION | 61.91 | contamination |
| FFPE_HD789_01_RNA_13_B23MVV7LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | NUMBER_ALL_RNA_FUSIONS | 71 | fusion |
| FFPE_HD789_01_RNA_13_B23MVV7LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | NUMBER_TRUE_RNA_FUSIONS | 0 | fusion |
| FFPE_HD789_01_RNA_13_B23MVV7LT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | NUMBER_FALSE_RNA_FUSIONS | 71 | fusion |
26 rows