Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f9/0e201f0255b51ccc6c52864a1766dd/FFPE_HD789_01_RNA_13_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/da/3784267cd8b03e2f89f2537172886d/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/da/3784267cd8b03e2f89f2537172886d/.command.run
==> STAGING COMPLETE (3 inputs)

PAIRED_END_BAM_INPUT
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paired = 293194060
unpaired = 5461408
MERGED PAIRED END READS = 293194060
MATES PROCESSED = 591849528
TOTAL READS     = 298655468
DISTINCT READS  = 1.60363e+08
DISTINCT COUNTS = 705
MAX COUNT       = 1406262
COUNTS OF 1     = 9.85293e+07
MAX TERMS       = 100
OBSERVED COUNTS (1406263)
1	98529297
2	33722628
3	13585479
4	6219373
5	3152958
6	1736272
7	1021081
8	635612
9	416921
10	284735
11	202830
12	149167
13	112624
14	87443
15	68883
16	55819
17	45314
18	37327
19	31692
20	27002
21	23011
22	19683
23	17532
24	15158
25	13519
26	11698
27	10662
28	9320
29	8582
30	7431
31	6981
32	6187
33	5681
34	5142
35	4777
36	4224
37	3887
38	3740
39	3311
40	3206
41	2772
42	2621
43	2585
44	2324
45	2227
46	2030
47	1877
48	1745
49	1651
50	1530
51	1442
52	1405
53	1245
54	1234
55	1183
56	1104
57	1030
58	969
59	875
60	941
61	860
62	799
63	776
64	743
65	715
66	626
67	634
68	578
69	515
70	537
71	515
72	453
73	457
74	459
75	451
76	419
77	367
78	393
79	372
80	356
81	345
82	340
83	329
84	272
85	300
86	285
87	254
88	279
89	263
90	225
91	228
92	228
93	233
94	203
95	215
96	195
97	169
98	181
99	176
100	183
101	174
102	162
103	129
104	174
105	153
106	131
107	146
108	157
109	119
110	123
111	115
112	116
113	106
114	125
115	109
116	103
117	102
118	104
119	99
120	103
121	97
122	104
123	97
124	104
125	91
126	71
127	83
128	81
129	77
130	67
131	66
132	83
133	68
134	53
135	68
136	70
137	72
138	60
139	56
140	70
141	68
142	52
143	51
144	61
145	56
146	44
147	51
148	52
149	49
150	46
151	35
152	39
153	53
154	62
155	49
156	41
157	41
158	40
159	46
160	24
161	45
162	38
163	30
164	39
165	34
166	35
167	31
168	31
169	38
170	38
171	30
172	29
173	29
174	35
175	30
176	18
177	23
178	37
179	18
180	44
181	29
182	28
183	24
184	27
185	25
186	17
187	26
188	22
189	29
190	33
191	25
192	19
193	20
194	19
195	17
196	24
197	14
198	22
199	20
200	19
201	22
202	15
203	21
204	14
205	12
206	19
207	16
208	17
209	14
210	11
211	12
212	22
213	15
214	18
215	14
216	14
217	16
218	21
219	13
220	11
221	22
222	14
223	13
224	7
225	7
226	15
227	15
228	12
229	16
230	17
231	15
232	8
233	13
234	10
235	11
236	12
237	10
238	14
239	10
240	13
241	10
242	13
243	8
244	10
245	11
246	11
247	13
248	11
249	4
250	11
251	12
252	5
253	7
254	7
255	14
256	5
257	8
258	4
259	6
260	6
261	8
262	5
263	6
264	5
265	10
266	7
267	6
268	8
269	8
270	6
271	3
272	11
273	12
274	3
275	6
276	6
277	6
278	8
279	6
280	8
281	6
282	2
283	4
284	4
285	8
286	6
287	5
288	5
289	5
290	13
291	6
292	6
293	5
294	4
295	7
296	8
297	5
298	8
299	4
300	4
301	4
302	3
303	6
304	3
305	10
306	8
307	5
308	3
309	3
310	7
311	1
312	3
313	2
314	8
315	1
316	8
317	7
318	5
319	1
320	4
321	1
322	3
323	7
324	4
325	4
326	5
327	8
328	3
329	4
330	7
331	5
332	2
333	1
334	5
335	3
336	3
337	7
338	2
339	3
340	3
341	6
342	3
343	1
344	6
345	4
346	2
347	2
348	2
349	3
350	3
351	4
352	3
353	5
354	3
355	2
356	4
357	3
358	1
359	4
360	2
361	2
362	3
363	2
364	2
365	1
367	1
368	1
369	1
370	2
371	2
372	2
373	2
374	2
375	4
376	1
377	2
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379	5
380	5
381	1
382	1
383	1
384	4
385	1
386	1
387	4
388	3
389	1
390	2
391	1
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393	6
394	2
395	2
397	3
400	1
401	3
402	1
403	2
404	4
405	3
406	2
407	1
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410	2
411	1
412	1
414	2
416	3
417	2
420	2
421	2
422	1
423	2
424	4
425	1
426	1
427	1
428	3
429	4
430	1
431	2
433	1
434	1
435	1
437	1
438	2
439	1
440	1
442	1
443	3
446	3
447	3
448	2
449	1
450	1
451	1
452	2
453	1
454	1
455	2
456	4
457	2
459	1
460	1
461	3
462	1
463	2
464	1
466	4
469	1
470	3
471	3
473	2
474	1
475	2
476	1
477	1
478	2
480	3
481	3
482	2
483	2
484	1
485	2
486	1
487	2
488	3
489	2
494	1
496	1
498	2
499	1
500	1
501	1
503	2
506	2
510	1
511	2
512	1
514	1
516	1
518	2
521	1
522	1
523	1
524	1
525	1
530	1
532	1
535	1
538	1
539	3
540	1
542	1
543	2
548	1
554	1
555	4
557	1
558	2
559	1
560	1
561	1
565	1
568	1
569	2
570	1
571	1
573	1
574	3
578	2
579	1
580	1
581	2
582	1
584	1
591	2
595	2
596	1
597	2
601	1
602	1
604	1
609	1
617	1
620	1
623	1
624	1
625	1
626	1
627	1
633	1
635	1
639	1
648	1
655	1
657	1
658	1
659	1
660	1
665	1
671	1
676	1
679	1
681	2
686	1
691	1
695	2
696	1
702	1
704	1
713	1
714	1
725	2
729	1
731	1
733	1
746	1
750	2
754	1
772	1
774	2
777	1
779	1
786	1
792	1
793	1
794	1
797	1
798	1
799	1
805	1
813	1
814	1
815	1
827	1
834	1
841	1
843	1
844	1
850	1
851	1
856	1
859	1
869	1
874	1
876	1
878	1
879	1
885	1
892	1
897	1
900	1
903	1
914	1
922	1
927	1
935	1
937	1
942	1
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947	1
969	1
998	1
1003	1
1025	1
1051	1
1056	1
1089	1
1092	1
1105	1
1109	1
1132	1
1145	1
1161	1
1212	1
1233	1
1255	1
1272	1
1294	1
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1301	1
1379	1
1407	1
1494	1
1609	1
1714	1
1720	1
1750	1
1771	1
1775	1
1819	1
1842	1
1905	1
1907	1
1921	1
1928	1
1960	1
1968	2
1989	1
1991	1
2009	1
2018	1
2054	1
2056	1
2077	2
2102	1
2121	1
2127	1
2176	1
2181	1
2190	1
2237	1
2241	1
2268	1
2270	1
2274	1
2298	1
2327	1
2331	2
2336	1
2344	1
2359	1
2369	1
2384	1
2391	1
2408	1
2410	1
2419	1
2437	1
2461	1
2548	1
2550	1
2557	2
2571	1
2610	1
2652	1
2682	1
2704	1
2707	1
2728	1
2774	1
2814	1
2820	1
2854	1
2972	1
3089	1
3258	1
3401	1
3559	1
3615	1
3668	1
3810	1
3905	1
4205	1
4556	1
4818	1
5878	1
8130	1
8328	1
12514	1
15522	1
34188	1
1406262	1

[ESTIMATING YIELD CURVE]
[BOOTSTRAPPING HISTOGRAM]
___...._._._.._._.._...._..___..._._._.__.__...____._._...._............
._.__..__.._._........__.._..._._...._._..__._.___...____...............
._......
[COMPUTING CONFIDENCE INTERVALS]
[WRITING OUTPUT]