Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a2/0195e8e421c4b2b04a6e627a95bf10/fi_workdir/tih_rna_sample_00574_B23MVV7LT4_1.gtf
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/dd/8386ced446df3744284e68f6c0758c/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/dd/8386ced446df3744284e68f6c0758c/.command.run
==> STAGING COMPLETE (3 inputs)
Using standard /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/agat_config.yaml file
------------------------------------------------------------------------------
| Another GFF Analysis Toolkit (AGAT) - Version: v1.2.0 |
| https://github.com/NBISweden/AGAT |
| National Bioinformatics Infrastructure Sweden (NBIS) - www.nbis.se |
------------------------------------------------------------------------------
------ Start parsing ------
-------------------------- parse options and metadata --------------------------
=> Accessing the feature_levels YAML file
Using standard /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/feature_levels.yaml file
=> Attribute used to group features when no Parent/ID relationship exists (i.e common tag):
* locus_tag
* gene_id
=> merge_loci option deactivated
=> Machine information:
This script is being run by perl v5.32.1
Bioperl location being used: /usr/local/lib/perl5/site_perl/Bio/
Operating system being used: linux
=> Accessing Ontology
No ontology accessible from the gff file header!
We use the SOFA ontology distributed with AGAT:
/usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/so.obo
Read ontology /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/so.obo:
4 root terms, and 2596 total terms, and 1516 leaf terms
Filtering ontology:
We found 1861 terms that are sequence_feature or is_a child of it.
--------------------------------- parsing file ---------------------------------
=> Number of line in file: 12652
=> Number of comment lines: 0
=> Fasta included: No
=> Number of features lines: 12652
=> Number of feature type (3rd column): 2
* Level1: 0 =>
* level2: 0 =>
* level3: 2 => exon CDS
* unknown: 0 =>
=>Check because only level3 features:
* Number of feature with Parent attribute:0
* Number of feature with a common attribute:12652
=> Some common attributes and some Parent attributes missing.
/!\ For features where both are missing A single Level2 features (e.g. mRNA) and a single level1 (e.g. gene) will be created by AGAT, and all level3 feautres (e,g, CDS,exon) will be attached to them. This is probably not what you want...
see B. 2.2 and 3. at https://agat.readthedocs.io/en/latest/agat_how_does_it_work.html
/!\ For features where the common attribute or the parent attribute is missing, it would be fine as long as you do not expect isoforms in your annotation (Eukaryote). see B. 4. at https://agat.readthedocs.io/en/latest/agat_how_does_it_work.html
!! You might try to fix the issue by choosing a common tag attribute to use in order to group the features correctly (parameter --ct in agat_convert_sp_gxf2gxf.pl).
=> Version of the Bioperl GFF parser selected by AGAT: 2
------ End parsing (done in 3 second) ------
------ Start checks ------
---------------------------- Check1: feature types -----------------------------
----------------------------------- ontology -----------------------------------
All feature types in agreement with the Ontology.
------------------------------------- agat -------------------------------------
AGAT can deal with all the encountered feature types (3rd column)
------------------------------ done in 0 seconds -------------------------------
------------------------------ Check2: duplicates ------------------------------
None found
------------------------------ done in 0 seconds -------------------------------
-------------------------- Check3: sequential bucket ---------------------------
Nothing to check as sequential bucket!
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check4: l2 linked to l3 ----------------------------
L1 and L2 created:
AGO3--AGO1 HAVANA gene 1541 23805 . + . FI_gene_label "AGO3^ENSG00000126070.20" ; ID "AGO3--AGO1^AGO3^ENSG00000126070.20" ; ccdsid "CCDS400.1" ; exon_id "ENSE00003551625.1" ; exon_number 4 ; gene_id "AGO3--AGO1^AGO3^ENSG00000126070.20" ; gene_name AGO3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000184172.5" ; havana_transcript "OTTHUMT00000019830.4" ; hgnc_id "HGNC:18421" ; level 2 ; orig_coord_info "chr1,36004385,36004475,+" ; protein_id "ENSP00000246314.6" ; tag basic CCDS ; transcript_id "AGO3--AGO1^ENST00000246314.10" ; transcript_name "AGO3-201" ; transcript_support_level 1 ; transcript_type protein_coding
AGO3--AGO1 HAVANA mRNA 1541 23805 . + . FI_gene_label "AGO3^ENSG00000126070.20" ; ID "AGO3--AGO1^ENST00000246314.10" ; Parent "AGO3--AGO1^AGO3^ENSG00000126070.20" ; ccdsid "CCDS400.1" ; exon_id "ENSE00003551625.1" ; exon_number 4 ; gene_id "AGO3--AGO1^AGO3^ENSG00000126070.20" ; gene_name AGO3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000184172.5" ; havana_transcript "OTTHUMT00000019830.4" ; hgnc_id "HGNC:18421" ; level 2 ; orig_coord_info "chr1,36004385,36004475,+" ; protein_id "ENSP00000246314.6" ; tag basic CCDS ; transcript_id "AGO3--AGO1^ENST00000246314.10" ; transcript_name "AGO3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AGO3--AGO1 HAVANA gene 43940 68691 . + . FI_gene_label "AGO1^ENSG00000092847.13" ; ID "AGO3--AGO1^AGO1^ENSG00000092847.13" ; ccdsid "CCDS398.1" ; exon_id "ENSE00001459761.1" ; exon_number 1 ; gene_id "AGO3--AGO1^AGO1^ENSG00000092847.13" ; gene_name AGO1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000007381.6" ; havana_transcript "OTTHUMT00000019337.5" ; hgnc_id "HGNC:3262" ; level 2 ; orig_coord_info "chr1,35883422,35883446,+" ; protein_id "ENSP00000362300.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AGO3--AGO1^ENST00000373204.6" ; transcript_name "AGO1-201" ; transcript_support_level 1 ; transcript_type protein_coding
AGO3--AGO1 HAVANA mRNA 43940 68691 . + . FI_gene_label "AGO1^ENSG00000092847.13" ; ID "AGO3--AGO1^ENST00000373204.6" ; Parent "AGO3--AGO1^AGO1^ENSG00000092847.13" ; ccdsid "CCDS398.1" ; exon_id "ENSE00001459761.1" ; exon_number 1 ; gene_id "AGO3--AGO1^AGO1^ENSG00000092847.13" ; gene_name AGO1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000007381.6" ; havana_transcript "OTTHUMT00000019337.5" ; hgnc_id "HGNC:3262" ; level 2 ; orig_coord_info "chr1,35883422,35883446,+" ; protein_id "ENSP00000362300.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AGO3--AGO1^ENST00000373204.6" ; transcript_name "AGO1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ATP10A--ANKS1B ENSEMBL gene 49046 56041 . + . FI_gene_label "ANKS1B^ENSG00000185046.18" ; ID "ATP10A--ANKS1B^ANKS1B^ENSG00000185046.18" ; exon_id "ENSE00003750013.1" ; exon_number 1 ; gene_id "ATP10A--ANKS1B^ANKS1B^ENSG00000185046.18" ; gene_name ANKS1B ; gene_type protein_coding ; havana_gene "OTTHUMG00000170308.8" ; hgnc_id "HGNC:24600" ; level 3 ; orig_coord_info "chr12,99825309,99825391,-" ; protein_id "ENSP00000331381.8" ; tag basic ; transcript_id "ATP10A--ANKS1B^ENST00000329257.8" ; transcript_name "ANKS1B-201" ; transcript_support_level 5 ; transcript_type protein_coding
ATP10A--ANKS1B ENSEMBL mRNA 49046 56041 . + . FI_gene_label "ANKS1B^ENSG00000185046.18" ; ID "ATP10A--ANKS1B^ENST00000329257.8" ; Parent "ATP10A--ANKS1B^ANKS1B^ENSG00000185046.18" ; exon_id "ENSE00003750013.1" ; exon_number 1 ; gene_id "ATP10A--ANKS1B^ANKS1B^ENSG00000185046.18" ; gene_name ANKS1B ; gene_type protein_coding ; havana_gene "OTTHUMG00000170308.8" ; hgnc_id "HGNC:24600" ; level 3 ; orig_coord_info "chr12,99825309,99825391,-" ; protein_id "ENSP00000331381.8" ; tag basic ; transcript_id "ATP10A--ANKS1B^ENST00000329257.8" ; transcript_name "ANKS1B-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
ATP10A--ANKS1B HAVANA gene 2171 44492 . + . FI_gene_label "ATP10A^ENSG00000206190.12" ; ID "ATP10A--ANKS1B^ATP10A^ENSG00000206190.12" ; ccdsid "CCDS32178.1" ; exon_id "ENSE00001494352.1" ; exon_number 2 ; gene_id "ATP10A--ANKS1B^ATP10A^ENSG00000206190.12" ; gene_name ATP10A ; gene_type protein_coding ; havana_gene "OTTHUMG00000171703.5" ; havana_transcript "OTTHUMT00000414831.2" ; hgnc_id "HGNC:13542" ; level 2 ; orig_coord_info "chr15,25862648,25863096,-" ; protein_id "ENSP00000349325.6" ; tag alternative_5_UTR basic appris_principal_1 CCDS ; transcript_id "ATP10A--ANKS1B^ENST00000356865.11" ; transcript_name "ATP10A-201" ; transcript_support_level 1 ; transcript_type protein_coding
ATP10A--ANKS1B HAVANA mRNA 2171 44492 . + . FI_gene_label "ATP10A^ENSG00000206190.12" ; ID "ATP10A--ANKS1B^ENST00000356865.11" ; Parent "ATP10A--ANKS1B^ATP10A^ENSG00000206190.12" ; ccdsid "CCDS32178.1" ; exon_id "ENSE00001494352.1" ; exon_number 2 ; gene_id "ATP10A--ANKS1B^ATP10A^ENSG00000206190.12" ; gene_name ATP10A ; gene_type protein_coding ; havana_gene "OTTHUMG00000171703.5" ; havana_transcript "OTTHUMT00000414831.2" ; hgnc_id "HGNC:13542" ; level 2 ; orig_coord_info "chr15,25862648,25863096,-" ; protein_id "ENSP00000349325.6" ; tag alternative_5_UTR basic appris_principal_1 CCDS ; transcript_id "ATP10A--ANKS1B^ENST00000356865.11" ; transcript_name "ATP10A-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CRK--NTRK3 HAVANA gene 2211 8060 . + . FI_gene_label "CRK^ENSG00000167193.8" ; ID "CRK--NTRK3^CRK^ENSG00000167193.8" ; ccdsid "CCDS11002.1" ; exon_id "ENSE00001199129.3" ; exon_number 1 ; gene_id "CRK--NTRK3^CRK^ENSG00000167193.8" ; gene_name CRK ; gene_type protein_coding ; havana_gene "OTTHUMG00000090317.4" ; havana_transcript "OTTHUMT00000206679.2" ; hgnc_id "HGNC:2362" ; level 2 ; orig_coord_info "chr17,1455877,1456117,-" ; protein_id "ENSP00000300574.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CRK--NTRK3^ENST00000300574.3" ; transcript_name "CRK-201" ; transcript_support_level 1 ; transcript_type protein_coding
CRK--NTRK3 HAVANA mRNA 2211 8060 . + . FI_gene_label "CRK^ENSG00000167193.8" ; ID "CRK--NTRK3^ENST00000300574.3" ; Parent "CRK--NTRK3^CRK^ENSG00000167193.8" ; ccdsid "CCDS11002.1" ; exon_id "ENSE00001199129.3" ; exon_number 1 ; gene_id "CRK--NTRK3^CRK^ENSG00000167193.8" ; gene_name CRK ; gene_type protein_coding ; havana_gene "OTTHUMG00000090317.4" ; havana_transcript "OTTHUMT00000206679.2" ; hgnc_id "HGNC:2362" ; level 2 ; orig_coord_info "chr17,1455877,1456117,-" ; protein_id "ENSP00000300574.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CRK--NTRK3^ENST00000300574.3" ; transcript_name "CRK-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CRK--NTRK3 HAVANA gene 11674 34383 . + . FI_gene_label "NTRK3^ENSG00000140538.16" ; ID "CRK--NTRK3^NTRK3^ENSG00000140538.16" ; ccdsid "CCDS32323.1" ; exon_id "ENSE00002296343.1" ; exon_number 1 ; gene_id "CRK--NTRK3^NTRK3^ENSG00000140538.16" ; gene_name NTRK3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000148677.12" ; havana_transcript "OTTHUMT00000403049.3" ; hgnc_id "HGNC:8033" ; level 2 ; orig_coord_info "chr15,88255906,88256153,-" ; protein_id "ENSP00000318328.3" ; tag basic CCDS ; transcript_id "CRK--NTRK3^ENST00000317501.7" ; transcript_name "NTRK3-201" ; transcript_support_level 1 ; transcript_type protein_coding
CRK--NTRK3 HAVANA mRNA 11674 34383 . + . FI_gene_label "NTRK3^ENSG00000140538.16" ; ID "CRK--NTRK3^ENST00000317501.7" ; Parent "CRK--NTRK3^NTRK3^ENSG00000140538.16" ; ccdsid "CCDS32323.1" ; exon_id "ENSE00002296343.1" ; exon_number 1 ; gene_id "CRK--NTRK3^NTRK3^ENSG00000140538.16" ; gene_name NTRK3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000148677.12" ; havana_transcript "OTTHUMT00000403049.3" ; hgnc_id "HGNC:8033" ; level 2 ; orig_coord_info "chr15,88255906,88256153,-" ; protein_id "ENSP00000318328.3" ; tag basic CCDS ; transcript_id "CRK--NTRK3^ENST00000317501.7" ; transcript_name "NTRK3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
DDHD2--ADAM2 HAVANA gene 28560 50242 . + . FI_gene_label "ADAM2^ENSG00000104755.15" ; ID "DDHD2--ADAM2^ADAM2^ENSG00000104755.15" ; ccdsid "CCDS34884.1" ; exon_id "ENSE00002122139.1" ; exon_number 1 ; gene_id "DDHD2--ADAM2^ADAM2^ENSG00000104755.15" ; gene_name ADAM2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164041.4" ; havana_transcript "OTTHUMT00000376926.2" ; hgnc_id "HGNC:198" ; level 2 ; orig_coord_info "chr8,39838131,39838185,-" ; protein_id "ENSP00000265708.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "DDHD2--ADAM2^ENST00000265708.9" ; transcript_name "ADAM2-201" ; transcript_support_level 1 ; transcript_type protein_coding
DDHD2--ADAM2 HAVANA mRNA 28560 50242 . + . FI_gene_label "ADAM2^ENSG00000104755.15" ; ID "DDHD2--ADAM2^ENST00000265708.9" ; Parent "DDHD2--ADAM2^ADAM2^ENSG00000104755.15" ; ccdsid "CCDS34884.1" ; exon_id "ENSE00002122139.1" ; exon_number 1 ; gene_id "DDHD2--ADAM2^ADAM2^ENSG00000104755.15" ; gene_name ADAM2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164041.4" ; havana_transcript "OTTHUMT00000376926.2" ; hgnc_id "HGNC:198" ; level 2 ; orig_coord_info "chr8,39838131,39838185,-" ; protein_id "ENSP00000265708.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "DDHD2--ADAM2^ENST00000265708.9" ; transcript_name "ADAM2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
DDHD2--ADAM2 HAVANA gene 2193 21952 . + . FI_gene_label "DDHD2^ENSG00000085788.14" ; ID "DDHD2--ADAM2^DDHD2^ENSG00000085788.14" ; ccdsid "CCDS34883.1" ; exon_id "ENSE00003695665.1" ; exon_number 2 ; gene_id "DDHD2--ADAM2^DDHD2^ENSG00000085788.14" ; gene_name DDHD2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164095.7" ; havana_transcript "OTTHUMT00000377251.3" ; hgnc_id "HGNC:29106" ; level 2 ; orig_coord_info "chr8,38232995,38233214,+" ; protein_id "ENSP00000380352.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "DDHD2--ADAM2^ENST00000397166.7" ; transcript_name "DDHD2-201" ; transcript_support_level 2 ; transcript_type protein_coding
DDHD2--ADAM2 HAVANA mRNA 2193 21952 . + . FI_gene_label "DDHD2^ENSG00000085788.14" ; ID "DDHD2--ADAM2^ENST00000397166.7" ; Parent "DDHD2--ADAM2^DDHD2^ENSG00000085788.14" ; ccdsid "CCDS34883.1" ; exon_id "ENSE00003695665.1" ; exon_number 2 ; gene_id "DDHD2--ADAM2^DDHD2^ENSG00000085788.14" ; gene_name DDHD2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164095.7" ; havana_transcript "OTTHUMT00000377251.3" ; hgnc_id "HGNC:29106" ; level 2 ; orig_coord_info "chr8,38232995,38233214,+" ; protein_id "ENSP00000380352.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "DDHD2--ADAM2^ENST00000397166.7" ; transcript_name "DDHD2-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
DDT--CCDC117 HAVANA gene 7888 15541 . + . FI_gene_label "CCDC117^ENSG00000159873.10" ; ID "DDT--CCDC117^CCDC117^ENSG00000159873.10" ; ccdsid "CCDS13846.1" ; exon_id "ENSE00003850931.1" ; exon_number 1 ; gene_id "DDT--CCDC117^CCDC117^ENSG00000159873.10" ; gene_name CCDC117 ; gene_type protein_coding ; havana_gene "OTTHUMG00000151091.3" ; havana_transcript "OTTHUMT00000321258.2" ; hgnc_id "HGNC:26599" ; level 2 ; orig_coord_info "chr22,28772850,28773034,+" ; protein_id "ENSP00000249064.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "DDT--CCDC117^ENST00000249064.9" ; transcript_name "CCDC117-201" ; transcript_support_level 1 ; transcript_type protein_coding
DDT--CCDC117 HAVANA mRNA 7888 15541 . + . FI_gene_label "CCDC117^ENSG00000159873.10" ; ID "DDT--CCDC117^ENST00000249064.9" ; Parent "DDT--CCDC117^CCDC117^ENSG00000159873.10" ; ccdsid "CCDS13846.1" ; exon_id "ENSE00003850931.1" ; exon_number 1 ; gene_id "DDT--CCDC117^CCDC117^ENSG00000159873.10" ; gene_name CCDC117 ; gene_type protein_coding ; havana_gene "OTTHUMG00000151091.3" ; havana_transcript "OTTHUMT00000321258.2" ; hgnc_id "HGNC:26599" ; level 2 ; orig_coord_info "chr22,28772850,28773034,+" ; protein_id "ENSP00000249064.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "DDT--CCDC117^ENST00000249064.9" ; transcript_name "CCDC117-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
DDT--CCDC117 HAVANA gene 1001 4866 . + . FI_gene_label "DDT^ENSG00000099977.14" ; ID "DDT--CCDC117^DDT^ENSG00000099977.14" ; ccdsid "CCDS13820.1" ; exon_id "ENSE00003468830.1" ; exon_number 2 ; gene_id "DDT--CCDC117^DDT^ENSG00000099977.14" ; gene_name DDT ; gene_type protein_coding ; havana_gene "OTTHUMG00000193422.1" ; havana_transcript "OTTHUMT00000320138.2" ; hgnc_id "HGNC:2732" ; level 2 ; orig_coord_info "chr22,23974307,23974414,-" ; protein_id "ENSP00000215773.4" ; tag basic appris_principal_1 CCDS ; transcript_id "DDT--CCDC117^ENST00000350608.7" ; transcript_name "DDT-201" ; transcript_support_level 1 ; transcript_type protein_coding
DDT--CCDC117 HAVANA mRNA 1001 4866 . + . FI_gene_label "DDT^ENSG00000099977.14" ; ID "DDT--CCDC117^ENST00000350608.7" ; Parent "DDT--CCDC117^DDT^ENSG00000099977.14" ; ccdsid "CCDS13820.1" ; exon_id "ENSE00003468830.1" ; exon_number 2 ; gene_id "DDT--CCDC117^DDT^ENSG00000099977.14" ; gene_name DDT ; gene_type protein_coding ; havana_gene "OTTHUMG00000193422.1" ; havana_transcript "OTTHUMT00000320138.2" ; hgnc_id "HGNC:2732" ; level 2 ; orig_coord_info "chr22,23974307,23974414,-" ; protein_id "ENSP00000215773.4" ; tag basic appris_principal_1 CCDS ; transcript_id "DDT--CCDC117^ENST00000350608.7" ; transcript_name "DDT-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
DDTL--CCDC117 HAVANA gene 1001 3945 . + . FI_gene_label "DDTL^ENSG00000099974.8" ; ID "DDTL--CCDC117^DDTL^ENSG00000099974.8" ; ccdsid "CCDS42988.1" ; exon_id "ENSE00001661823.3" ; exon_number 1 ; gene_id "DDTL--CCDC117^DDTL^ENSG00000099974.8" ; gene_name DDTL ; gene_type protein_coding ; havana_gene "OTTHUMG00000150800.2" ; havana_transcript "OTTHUMT00000320142.2" ; hgnc_id "HGNC:33446" ; level 2 ; orig_coord_info "chr22,23966915,23967022,+" ; protein_id "ENSP00000215770.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "DDTL--CCDC117^ENST00000215770.6" ; transcript_name "DDTL-201" ; transcript_support_level 2 ; transcript_type protein_coding
DDTL--CCDC117 HAVANA mRNA 1001 3945 . + . FI_gene_label "DDTL^ENSG00000099974.8" ; ID "DDTL--CCDC117^ENST00000215770.6" ; Parent "DDTL--CCDC117^DDTL^ENSG00000099974.8" ; ccdsid "CCDS42988.1" ; exon_id "ENSE00001661823.3" ; exon_number 1 ; gene_id "DDTL--CCDC117^DDTL^ENSG00000099974.8" ; gene_name DDTL ; gene_type protein_coding ; havana_gene "OTTHUMG00000150800.2" ; havana_transcript "OTTHUMT00000320142.2" ; hgnc_id "HGNC:33446" ; level 2 ; orig_coord_info "chr22,23966915,23967022,+" ; protein_id "ENSP00000215770.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "DDTL--CCDC117^ENST00000215770.6" ; transcript_name "DDTL-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
DDTL--CCDC117 HAVANA gene 6967 14620 . + . FI_gene_label "CCDC117^ENSG00000159873.10" ; ID "DDTL--CCDC117^CCDC117^ENSG00000159873.10" ; ccdsid "CCDS13846.1" ; exon_id "ENSE00003850931.1" ; exon_number 1 ; gene_id "DDTL--CCDC117^CCDC117^ENSG00000159873.10" ; gene_name CCDC117 ; gene_type protein_coding ; havana_gene "OTTHUMG00000151091.3" ; havana_transcript "OTTHUMT00000321258.2" ; hgnc_id "HGNC:26599" ; level 2 ; orig_coord_info "chr22,28772850,28773034,+" ; protein_id "ENSP00000249064.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "DDTL--CCDC117^ENST00000249064.9" ; transcript_name "CCDC117-201" ; transcript_support_level 1 ; transcript_type protein_coding
DDTL--CCDC117 HAVANA mRNA 6967 14620 . + . FI_gene_label "CCDC117^ENSG00000159873.10" ; ID "DDTL--CCDC117^ENST00000249064.9" ; Parent "DDTL--CCDC117^CCDC117^ENSG00000159873.10" ; ccdsid "CCDS13846.1" ; exon_id "ENSE00003850931.1" ; exon_number 1 ; gene_id "DDTL--CCDC117^CCDC117^ENSG00000159873.10" ; gene_name CCDC117 ; gene_type protein_coding ; havana_gene "OTTHUMG00000151091.3" ; havana_transcript "OTTHUMT00000321258.2" ; hgnc_id "HGNC:26599" ; level 2 ; orig_coord_info "chr22,28772850,28773034,+" ; protein_id "ENSP00000249064.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "DDTL--CCDC117^ENST00000249064.9" ; transcript_name "CCDC117-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ESR1--RRM2B HAVANA gene 7250 25560 . + . FI_gene_label "ESR1^ENSG00000091831.24" ; ID "ESR1--RRM2B^ESR1^ENSG00000091831.24" ; ccdsid "CCDS5234.1" ; exon_id "ENSE00001877305.2" ; exon_number 1 ; gene_id "ESR1--RRM2B^ESR1^ENSG00000091831.24" ; gene_name ESR1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000016103.7" ; havana_transcript "OTTHUMT00000043308.2" ; hgnc_id "HGNC:3467" ; level 2 ; orig_coord_info "chr6,151807913,151808364,+" ; protein_id "ENSP00000206249.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ESR1--RRM2B^ENST00000206249.8" ; transcript_name "ESR1-201" ; transcript_support_level 1 ; transcript_type protein_coding
ESR1--RRM2B HAVANA mRNA 7250 25560 . + . FI_gene_label "ESR1^ENSG00000091831.24" ; ID "ESR1--RRM2B^ENST00000206249.8" ; Parent "ESR1--RRM2B^ESR1^ENSG00000091831.24" ; ccdsid "CCDS5234.1" ; exon_id "ENSE00001877305.2" ; exon_number 1 ; gene_id "ESR1--RRM2B^ESR1^ENSG00000091831.24" ; gene_name ESR1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000016103.7" ; havana_transcript "OTTHUMT00000043308.2" ; hgnc_id "HGNC:3467" ; level 2 ; orig_coord_info "chr6,151807913,151808364,+" ; protein_id "ENSP00000206249.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ESR1--RRM2B^ENST00000206249.8" ; transcript_name "ESR1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ESR1--RRM2B HAVANA gene 35052 49114 . + . FI_gene_label "RRM2B^ENSG00000048392.12" ; ID "ESR1--RRM2B^RRM2B^ENSG00000048392.12" ; ccdsid "CCDS34932.1" ; exon_id "ENSE00001161985.2" ; exon_number 1 ; gene_id "ESR1--RRM2B^RRM2B^ENSG00000048392.12" ; gene_name RRM2B ; gene_type protein_coding ; havana_gene "OTTHUMG00000164776.7" ; havana_transcript "OTTHUMT00000380191.5" ; hgnc_id "HGNC:17296" ; level 2 ; orig_coord_info "chr8,102238827,102238874,-" ; protein_id "ENSP00000251810.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ESR1--RRM2B^ENST00000251810.8" ; transcript_name "RRM2B-201" ; transcript_support_level 1 ; transcript_type protein_coding
ESR1--RRM2B HAVANA mRNA 35052 49114 . + . FI_gene_label "RRM2B^ENSG00000048392.12" ; ID "ESR1--RRM2B^ENST00000251810.8" ; Parent "ESR1--RRM2B^RRM2B^ENSG00000048392.12" ; ccdsid "CCDS34932.1" ; exon_id "ENSE00001161985.2" ; exon_number 1 ; gene_id "ESR1--RRM2B^RRM2B^ENSG00000048392.12" ; gene_name RRM2B ; gene_type protein_coding ; havana_gene "OTTHUMG00000164776.7" ; havana_transcript "OTTHUMT00000380191.5" ; hgnc_id "HGNC:17296" ; level 2 ; orig_coord_info "chr8,102238827,102238874,-" ; protein_id "ENSP00000251810.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ESR1--RRM2B^ENST00000251810.8" ; transcript_name "RRM2B-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ESR1--UBR5-AS1 HAVANA gene 7250 25560 . + . FI_gene_label "ESR1^ENSG00000091831.24" ; ID "ESR1--UBR5-AS1^ESR1^ENSG00000091831.24" ; ccdsid "CCDS5234.1" ; exon_id "ENSE00001877305.2" ; exon_number 1 ; gene_id "ESR1--UBR5-AS1^ESR1^ENSG00000091831.24" ; gene_name ESR1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000016103.7" ; havana_transcript "OTTHUMT00000043308.2" ; hgnc_id "HGNC:3467" ; level 2 ; orig_coord_info "chr6,151807913,151808364,+" ; protein_id "ENSP00000206249.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ESR1--UBR5-AS1^ENST00000206249.8" ; transcript_name "ESR1-201" ; transcript_support_level 1 ; transcript_type protein_coding
ESR1--UBR5-AS1 HAVANA mRNA 7250 25560 . + . FI_gene_label "ESR1^ENSG00000091831.24" ; ID "ESR1--UBR5-AS1^ENST00000206249.8" ; Parent "ESR1--UBR5-AS1^ESR1^ENSG00000091831.24" ; ccdsid "CCDS5234.1" ; exon_id "ENSE00001877305.2" ; exon_number 1 ; gene_id "ESR1--UBR5-AS1^ESR1^ENSG00000091831.24" ; gene_name ESR1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000016103.7" ; havana_transcript "OTTHUMT00000043308.2" ; hgnc_id "HGNC:3467" ; level 2 ; orig_coord_info "chr6,151807913,151808364,+" ; protein_id "ENSP00000206249.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ESR1--UBR5-AS1^ENST00000206249.8" ; transcript_name "ESR1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
FGFR3--LETM1 HAVANA gene 1020 10219 . + . FI_gene_label "FGFR3^ENSG00000068078.20" ; ID "FGFR3--LETM1^FGFR3^ENSG00000068078.20" ; exon_id "ENSE00001596390.1" ; exon_number 2 ; gene_id "FGFR3--LETM1^FGFR3^ENSG00000068078.20" ; gene_name FGFR3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000121148.7" ; havana_transcript "OTTHUMT00000495785.1" ; hgnc_id "HGNC:3690" ; level 2 ; orig_coord_info "chr4,1793935,1794043,+" ; protein_id "ENSP00000260795.3" ; transcript_id "FGFR3--LETM1^ENST00000260795.8" ; transcript_name "FGFR3-201" ; transcript_support_level 1 ; transcript_type nonsense_mediated_decay
FGFR3--LETM1 HAVANA mRNA 1020 10219 . + . FI_gene_label "FGFR3^ENSG00000068078.20" ; ID "FGFR3--LETM1^ENST00000260795.8" ; Parent "FGFR3--LETM1^FGFR3^ENSG00000068078.20" ; exon_id "ENSE00001596390.1" ; exon_number 2 ; gene_id "FGFR3--LETM1^FGFR3^ENSG00000068078.20" ; gene_name FGFR3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000121148.7" ; havana_transcript "OTTHUMT00000495785.1" ; hgnc_id "HGNC:3690" ; level 2 ; orig_coord_info "chr4,1793935,1794043,+" ; protein_id "ENSP00000260795.3" ; transcript_id "FGFR3--LETM1^ENST00000260795.8" ; transcript_name "FGFR3-201" ; transcript_support_level 1 ; transcript_type nonsense_mediated_decay
L1 and L2 created:
FGFR3--LETM1 HAVANA gene 14817 36602 . + . FI_gene_label "LETM1^ENSG00000168924.15" ; ID "FGFR3--LETM1^LETM1^ENSG00000168924.15" ; ccdsid "CCDS3355.1" ; exon_id "ENSE00001164778.2" ; exon_number 1 ; gene_id "FGFR3--LETM1^LETM1^ENSG00000168924.15" ; gene_name LETM1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000121149.5" ; havana_transcript "OTTHUMT00000241634.2" ; hgnc_id "HGNC:6556" ; level 2 ; orig_coord_info "chr4,1855869,1855950,-" ; protein_id "ENSP00000305653.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "FGFR3--LETM1^ENST00000302787.3" ; transcript_name "LETM1-201" ; transcript_support_level 1 ; transcript_type protein_coding
FGFR3--LETM1 HAVANA mRNA 14817 36602 . + . FI_gene_label "LETM1^ENSG00000168924.15" ; ID "FGFR3--LETM1^ENST00000302787.3" ; Parent "FGFR3--LETM1^LETM1^ENSG00000168924.15" ; ccdsid "CCDS3355.1" ; exon_id "ENSE00001164778.2" ; exon_number 1 ; gene_id "FGFR3--LETM1^LETM1^ENSG00000168924.15" ; gene_name LETM1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000121149.5" ; havana_transcript "OTTHUMT00000241634.2" ; hgnc_id "HGNC:6556" ; level 2 ; orig_coord_info "chr4,1855869,1855950,-" ; protein_id "ENSP00000305653.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "FGFR3--LETM1^ENST00000302787.3" ; transcript_name "LETM1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
FRY--UACA HAVANA gene 84642 113562 . + . FI_gene_label "UACA^ENSG00000137831.15" ; ID "FRY--UACA^UACA^ENSG00000137831.15" ; ccdsid "CCDS10235.1" ; exon_id "ENSE00001027237.7" ; exon_number 1 ; gene_id "FRY--UACA^UACA^ENSG00000137831.15" ; gene_name UACA ; gene_type protein_coding ; havana_gene "OTTHUMG00000133363.5" ; havana_transcript "OTTHUMT00000257199.3" ; hgnc_id "HGNC:15947" ; level 2 ; orig_coord_info "chr15,70763330,70763407,-" ; protein_id "ENSP00000314556.6" ; tag basic MANE_Select appris_principal_3 CCDS ; transcript_id "FRY--UACA^ENST00000322954.11" ; transcript_name "UACA-201" ; transcript_support_level 1 ; transcript_type protein_coding
FRY--UACA HAVANA mRNA 84642 113562 . + . FI_gene_label "UACA^ENSG00000137831.15" ; ID "FRY--UACA^ENST00000322954.11" ; Parent "FRY--UACA^UACA^ENSG00000137831.15" ; ccdsid "CCDS10235.1" ; exon_id "ENSE00001027237.7" ; exon_number 1 ; gene_id "FRY--UACA^UACA^ENSG00000137831.15" ; gene_name UACA ; gene_type protein_coding ; havana_gene "OTTHUMG00000133363.5" ; havana_transcript "OTTHUMT00000257199.3" ; hgnc_id "HGNC:15947" ; level 2 ; orig_coord_info "chr15,70763330,70763407,-" ; protein_id "ENSP00000314556.6" ; tag basic MANE_Select appris_principal_3 CCDS ; transcript_id "FRY--UACA^ENST00000322954.11" ; transcript_name "UACA-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
FRY--UACA HAVANA gene 14797 18487 . + . FI_gene_label "FRY^ENSG00000073910.23" ; ID "FRY--UACA^FRY^ENSG00000073910.23" ; exon_id "ENSE00001591297.1" ; exon_number 1 ; gene_id "FRY--UACA^FRY^ENSG00000073910.23" ; gene_name FRY ; gene_type protein_coding ; havana_gene "OTTHUMG00000016696.9" ; havana_transcript "OTTHUMT00000044407.2" ; hgnc_id "HGNC:20367" ; level 2 ; orig_coord_info "chr13,32061103,32061163,+" ; protein_id "ENSP00000398010.1" ; tag CAGE_supported_TSS mRNA_end_NF cds_end_NF not_organism_supported ; transcript_id "FRY--UACA^ENST00000436046.1" ; transcript_name "FRY-204" ; transcript_support_level 5 ; transcript_type protein_coding
FRY--UACA HAVANA mRNA 14797 18487 . + . FI_gene_label "FRY^ENSG00000073910.23" ; ID "FRY--UACA^ENST00000436046.1" ; Parent "FRY--UACA^FRY^ENSG00000073910.23" ; exon_id "ENSE00001591297.1" ; exon_number 1 ; gene_id "FRY--UACA^FRY^ENSG00000073910.23" ; gene_name FRY ; gene_type protein_coding ; havana_gene "OTTHUMG00000016696.9" ; havana_transcript "OTTHUMT00000044407.2" ; hgnc_id "HGNC:20367" ; level 2 ; orig_coord_info "chr13,32061103,32061163,+" ; protein_id "ENSP00000398010.1" ; tag CAGE_supported_TSS mRNA_end_NF cds_end_NF not_organism_supported ; transcript_id "FRY--UACA^ENST00000436046.1" ; transcript_name "FRY-204" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
FSIP1--AC013652.1 HAVANA gene 1001 15962 . + . FI_gene_label "FSIP1^ENSG00000150667.8" ; ID "FSIP1--AC013652.1^FSIP1^ENSG00000150667.8" ; ccdsid "CCDS10050.1" ; exon_id "ENSE00003574039.1" ; exon_number 2 ; gene_id "FSIP1--AC013652.1^FSIP1^ENSG00000150667.8" ; gene_name FSIP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000172456.3" ; havana_transcript "OTTHUMT00000252118.4" ; hgnc_id "HGNC:21674" ; level 2 ; orig_coord_info "chr15,39776399,39776524,-" ; protein_id "ENSP00000280236.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "FSIP1--AC013652.1^ENST00000350221.4" ; transcript_name "FSIP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
FSIP1--AC013652.1 HAVANA mRNA 1001 15962 . + . FI_gene_label "FSIP1^ENSG00000150667.8" ; ID "FSIP1--AC013652.1^ENST00000350221.4" ; Parent "FSIP1--AC013652.1^FSIP1^ENSG00000150667.8" ; ccdsid "CCDS10050.1" ; exon_id "ENSE00003574039.1" ; exon_number 2 ; gene_id "FSIP1--AC013652.1^FSIP1^ENSG00000150667.8" ; gene_name FSIP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000172456.3" ; havana_transcript "OTTHUMT00000252118.4" ; hgnc_id "HGNC:21674" ; level 2 ; orig_coord_info "chr15,39776399,39776524,-" ; protein_id "ENSP00000280236.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "FSIP1--AC013652.1^ENST00000350221.4" ; transcript_name "FSIP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
GLI3--AC034187.1 HAVANA gene 2769 37357 . + . FI_gene_label "GLI3^ENSG00000106571.15" ; ID "GLI3--AC034187.1^GLI3^ENSG00000106571.15" ; ccdsid "CCDS5465.1" ; exon_id "ENSE00001523285.1" ; exon_number 2 ; gene_id "GLI3--AC034187.1^GLI3^ENSG00000106571.15" ; gene_name GLI3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000023630.8" ; havana_transcript "OTTHUMT00000250806.4" ; hgnc_id "HGNC:4319" ; level 2 ; orig_coord_info "chr7,42223130,42223253,-" ; protein_id "ENSP00000379258.3" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "GLI3--AC034187.1^ENST00000395925.8" ; transcript_name "GLI3-201" ; transcript_support_level 5 ; transcript_type protein_coding
GLI3--AC034187.1 HAVANA mRNA 2769 37357 . + . FI_gene_label "GLI3^ENSG00000106571.15" ; ID "GLI3--AC034187.1^ENST00000395925.8" ; Parent "GLI3--AC034187.1^GLI3^ENSG00000106571.15" ; ccdsid "CCDS5465.1" ; exon_id "ENSE00001523285.1" ; exon_number 2 ; gene_id "GLI3--AC034187.1^GLI3^ENSG00000106571.15" ; gene_name GLI3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000023630.8" ; havana_transcript "OTTHUMT00000250806.4" ; hgnc_id "HGNC:4319" ; level 2 ; orig_coord_info "chr7,42223130,42223253,-" ; protein_id "ENSP00000379258.3" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "GLI3--AC034187.1^ENST00000395925.8" ; transcript_name "GLI3-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
GNA13--BPTF HAVANA gene 13968 57066 . + . FI_gene_label "BPTF^ENSG00000171634.18" ; ID "GNA13--BPTF^BPTF^ENSG00000171634.18" ; ccdsid "CCDS11673.1" ; exon_id "ENSE00002689718.2" ; exon_number 1 ; gene_id "GNA13--BPTF^BPTF^ENSG00000171634.18" ; gene_name BPTF ; gene_type protein_coding ; havana_gene "OTTHUMG00000132254.6" ; havana_transcript "OTTHUMT00000255334.3" ; hgnc_id "HGNC:3581" ; level 2 ; orig_coord_info "chr17,67825725,67826337,+" ; protein_id "ENSP00000307208.6" ; tag basic MANE_Select CCDS ; transcript_id "GNA13--BPTF^ENST00000306378.11" ; transcript_name "BPTF-201" ; transcript_support_level 1 ; transcript_type protein_coding
GNA13--BPTF HAVANA mRNA 13968 57066 . + . FI_gene_label "BPTF^ENSG00000171634.18" ; ID "GNA13--BPTF^ENST00000306378.11" ; Parent "GNA13--BPTF^BPTF^ENSG00000171634.18" ; ccdsid "CCDS11673.1" ; exon_id "ENSE00002689718.2" ; exon_number 1 ; gene_id "GNA13--BPTF^BPTF^ENSG00000171634.18" ; gene_name BPTF ; gene_type protein_coding ; havana_gene "OTTHUMG00000132254.6" ; havana_transcript "OTTHUMT00000255334.3" ; hgnc_id "HGNC:3581" ; level 2 ; orig_coord_info "chr17,67825725,67826337,+" ; protein_id "ENSP00000307208.6" ; tag basic MANE_Select CCDS ; transcript_id "GNA13--BPTF^ENST00000306378.11" ; transcript_name "BPTF-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
GNA13--BPTF HAVANA gene 1001 10967 . + . FI_gene_label "GNA13^ENSG00000120063.10" ; ID "GNA13--BPTF^GNA13^ENSG00000120063.10" ; ccdsid "CCDS11661.1" ; exon_id "ENSE00001229026.4" ; exon_number 1 ; gene_id "GNA13--BPTF^GNA13^ENSG00000120063.10" ; gene_name GNA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179316.2" ; havana_transcript "OTTHUMT00000445720.2" ; hgnc_id "HGNC:4381" ; level 2 ; orig_coord_info "chr17,65056311,65056593,-" ; protein_id "ENSP00000400717.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "GNA13--BPTF^ENST00000439174.7" ; transcript_name "GNA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
GNA13--BPTF HAVANA mRNA 1001 10967 . + . FI_gene_label "GNA13^ENSG00000120063.10" ; ID "GNA13--BPTF^ENST00000439174.7" ; Parent "GNA13--BPTF^GNA13^ENSG00000120063.10" ; ccdsid "CCDS11661.1" ; exon_id "ENSE00001229026.4" ; exon_number 1 ; gene_id "GNA13--BPTF^GNA13^ENSG00000120063.10" ; gene_name GNA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179316.2" ; havana_transcript "OTTHUMT00000445720.2" ; hgnc_id "HGNC:4381" ; level 2 ; orig_coord_info "chr17,65056311,65056593,-" ; protein_id "ENSP00000400717.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "GNA13--BPTF^ENST00000439174.7" ; transcript_name "GNA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
GREB1--E2F6 ENSEMBL gene 5656 47439 . + . FI_gene_label "GREB1^ENSG00000196208.14" ; ID "GREB1--E2F6^GREB1^ENSG00000196208.14" ; ccdsid "CCDS42655.1" ; exon_id "ENSE00001720941.1" ; exon_number 1 ; gene_id "GREB1--E2F6^GREB1^ENSG00000196208.14" ; gene_name GREB1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000141276.8" ; hgnc_id "HGNC:24885" ; level 3 ; orig_coord_info "chr2,11556615,11556771,+" ; protein_id "ENSP00000234142.5" ; tag basic appris_principal_1 CCDS ; transcript_id "GREB1--E2F6^ENST00000234142.9" ; transcript_name "GREB1-201" ; transcript_support_level 1 ; transcript_type protein_coding
GREB1--E2F6 ENSEMBL mRNA 5656 47439 . + . FI_gene_label "GREB1^ENSG00000196208.14" ; ID "GREB1--E2F6^ENST00000234142.9" ; Parent "GREB1--E2F6^GREB1^ENSG00000196208.14" ; ccdsid "CCDS42655.1" ; exon_id "ENSE00001720941.1" ; exon_number 1 ; gene_id "GREB1--E2F6^GREB1^ENSG00000196208.14" ; gene_name GREB1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000141276.8" ; hgnc_id "HGNC:24885" ; level 3 ; orig_coord_info "chr2,11556615,11556771,+" ; protein_id "ENSP00000234142.5" ; tag basic appris_principal_1 CCDS ; transcript_id "GREB1--E2F6^ENST00000234142.9" ; transcript_name "GREB1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
GREB1--E2F6 ENSEMBL gene 50442 62508 . + . FI_gene_label "E2F6^ENSG00000169016.17" ; ID "GREB1--E2F6^E2F6^ENSG00000169016.17" ; ccdsid "CCDS62859.1" ; exon_id "ENSE00003548166.1" ; exon_number 2 ; gene_id "GREB1--E2F6^E2F6^ENSG00000169016.17" ; gene_name E2F6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000090565.6" ; hgnc_id "HGNC:3120" ; level 3 ; orig_coord_info "chr2,11458281,11458292,-" ; protein_id "ENSP00000302159.4" ; tag basic appris_alternative_2 CCDS ; transcript_id "GREB1--E2F6^ENST00000307236.8" ; transcript_name "E2F6-201" ; transcript_support_level 1 ; transcript_type protein_coding
GREB1--E2F6 ENSEMBL mRNA 50442 62508 . + . FI_gene_label "E2F6^ENSG00000169016.17" ; ID "GREB1--E2F6^ENST00000307236.8" ; Parent "GREB1--E2F6^E2F6^ENSG00000169016.17" ; ccdsid "CCDS62859.1" ; exon_id "ENSE00003548166.1" ; exon_number 2 ; gene_id "GREB1--E2F6^E2F6^ENSG00000169016.17" ; gene_name E2F6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000090565.6" ; hgnc_id "HGNC:3120" ; level 3 ; orig_coord_info "chr2,11458281,11458292,-" ; protein_id "ENSP00000302159.4" ; tag basic appris_alternative_2 CCDS ; transcript_id "GREB1--E2F6^ENST00000307236.8" ; transcript_name "E2F6-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
KLRC4--KLRK1 HAVANA gene 7417 15704 . + . FI_gene_label "KLRK1^ENSG00000213809.9" ; ID "KLRC4--KLRK1^KLRK1^ENSG00000213809.9" ; ccdsid "CCDS8623.1" ; exon_id "ENSE00003640305.1" ; exon_number 2 ; gene_id "KLRC4--KLRK1^KLRK1^ENSG00000213809.9" ; gene_name KLRK1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168574.3" ; havana_transcript "OTTHUMT00000400269.2" ; hgnc_id "HGNC:18788" ; level 2 ; orig_coord_info "chr12,10388771,10388810,-" ; protein_id "ENSP00000240618.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "KLRC4--KLRK1^ENST00000240618.11" ; transcript_name "KLRK1-201" ; transcript_support_level 1 ; transcript_type protein_coding
KLRC4--KLRK1 HAVANA mRNA 7417 15704 . + . FI_gene_label "KLRK1^ENSG00000213809.9" ; ID "KLRC4--KLRK1^ENST00000240618.11" ; Parent "KLRC4--KLRK1^KLRK1^ENSG00000213809.9" ; ccdsid "CCDS8623.1" ; exon_id "ENSE00003640305.1" ; exon_number 2 ; gene_id "KLRC4--KLRK1^KLRK1^ENSG00000213809.9" ; gene_name KLRK1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168574.3" ; havana_transcript "OTTHUMT00000400269.2" ; hgnc_id "HGNC:18788" ; level 2 ; orig_coord_info "chr12,10388771,10388810,-" ; protein_id "ENSP00000240618.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "KLRC4--KLRK1^ENST00000240618.11" ; transcript_name "KLRK1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
KLRC4--KLRK1 HAVANA gene 1001 3376 . + . FI_gene_label "KLRC4^ENSG00000183542.5" ; ID "KLRC4--KLRK1^KLRC4^ENSG00000183542.5" ; ccdsid "CCDS8624.1" ; exon_id "ENSE00001145174.1" ; exon_number 1 ; gene_id "KLRC4--KLRK1^KLRC4^ENSG00000183542.5" ; gene_name KLRC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168575.2" ; havana_transcript "OTTHUMT00000400108.2" ; hgnc_id "HGNC:6377" ; level 2 ; orig_coord_info "chr12,10409389,10409575,-" ; protein_id "ENSP00000310216.1" ; tag basic appris_principal_1 CCDS ; transcript_id "KLRC4--KLRK1^ENST00000309384.2" ; transcript_name "KLRC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
KLRC4--KLRK1 HAVANA mRNA 1001 3376 . + . FI_gene_label "KLRC4^ENSG00000183542.5" ; ID "KLRC4--KLRK1^ENST00000309384.2" ; Parent "KLRC4--KLRK1^KLRC4^ENSG00000183542.5" ; ccdsid "CCDS8624.1" ; exon_id "ENSE00001145174.1" ; exon_number 1 ; gene_id "KLRC4--KLRK1^KLRC4^ENSG00000183542.5" ; gene_name KLRC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168575.2" ; havana_transcript "OTTHUMT00000400108.2" ; hgnc_id "HGNC:6377" ; level 2 ; orig_coord_info "chr12,10409389,10409575,-" ; protein_id "ENSP00000310216.1" ; tag basic appris_principal_1 CCDS ; transcript_id "KLRC4--KLRK1^ENST00000309384.2" ; transcript_name "KLRC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
LMBR1--DYNC2I1 HAVANA gene 1034 31326 . + . FI_gene_label "LMBR1^ENSG00000105983.22" ; ID "LMBR1--DYNC2I1^LMBR1^ENSG00000105983.22" ; ccdsid "CCDS5945.1" ; exon_id "ENSE00001936388.2" ; exon_number 1 ; gene_id "LMBR1--DYNC2I1^LMBR1^ENSG00000105983.22" ; gene_name LMBR1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000151510.8" ; havana_transcript "OTTHUMT00000347939.4" ; hgnc_id "HGNC:13243" ; level 2 ; orig_coord_info "chr7,156892928,156892993,-" ; protein_id "ENSP00000326604.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "LMBR1--DYNC2I1^ENST00000353442.10" ; transcript_name "LMBR1-201" ; transcript_support_level 1 ; transcript_type protein_coding
LMBR1--DYNC2I1 HAVANA mRNA 1034 31326 . + . FI_gene_label "LMBR1^ENSG00000105983.22" ; ID "LMBR1--DYNC2I1^ENST00000353442.10" ; Parent "LMBR1--DYNC2I1^LMBR1^ENSG00000105983.22" ; ccdsid "CCDS5945.1" ; exon_id "ENSE00001936388.2" ; exon_number 1 ; gene_id "LMBR1--DYNC2I1^LMBR1^ENSG00000105983.22" ; gene_name LMBR1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000151510.8" ; havana_transcript "OTTHUMT00000347939.4" ; hgnc_id "HGNC:13243" ; level 2 ; orig_coord_info "chr7,156892928,156892993,-" ; protein_id "ENSP00000326604.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "LMBR1--DYNC2I1^ENST00000353442.10" ; transcript_name "LMBR1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
LMBR1--DYNC2I1 HAVANA gene 38295 40115 . + . FI_gene_label "DYNC2I1^ENSG00000126870.16" ; ID "LMBR1--DYNC2I1^DYNC2I1^ENSG00000126870.16" ; exon_id "ENSE00001786738.1" ; exon_number 3 ; gene_id "LMBR1--DYNC2I1^DYNC2I1^ENSG00000126870.16" ; gene_name DYNC2I1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000151443.5" ; havana_transcript "OTTHUMT00000322671.4" ; hgnc_id "HGNC:21862" ; level 2 ; orig_coord_info "chr7,158871211,158871499,+" ; protein_id "ENSP00000380330.3" ; tag mRNA_end_NF cds_end_NF ; transcript_id "LMBR1--DYNC2I1^ENST00000397143.3" ; transcript_name "DYNC2I1-201" ; transcript_support_level 3 ; transcript_type protein_coding
LMBR1--DYNC2I1 HAVANA mRNA 38295 40115 . + . FI_gene_label "DYNC2I1^ENSG00000126870.16" ; ID "LMBR1--DYNC2I1^ENST00000397143.3" ; Parent "LMBR1--DYNC2I1^DYNC2I1^ENSG00000126870.16" ; exon_id "ENSE00001786738.1" ; exon_number 3 ; gene_id "LMBR1--DYNC2I1^DYNC2I1^ENSG00000126870.16" ; gene_name DYNC2I1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000151443.5" ; havana_transcript "OTTHUMT00000322671.4" ; hgnc_id "HGNC:21862" ; level 2 ; orig_coord_info "chr7,158871211,158871499,+" ; protein_id "ENSP00000380330.3" ; tag mRNA_end_NF cds_end_NF ; transcript_id "LMBR1--DYNC2I1^ENST00000397143.3" ; transcript_name "DYNC2I1-201" ; transcript_support_level 3 ; transcript_type protein_coding
L1 and L2 created:
LMBR1--ESYT2 HAVANA gene 37727 65237 . + . FI_gene_label "ESYT2^ENSG00000117868.17" ; ID "LMBR1--ESYT2^ESYT2^ENSG00000117868.17" ; exon_id "ENSE00002700428.1" ; exon_number 1 ; gene_id "LMBR1--ESYT2^ESYT2^ENSG00000117868.17" ; gene_name ESYT2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000151436.3" ; havana_transcript "OTTHUMT00000322647.2" ; hgnc_id "HGNC:22211" ; level 2 ; orig_coord_info "chr7,158829089,158829418,-" ; protein_id "ENSP00000251527.6" ; tag basic appris_alternative_2 ; transcript_id "LMBR1--ESYT2^ENST00000251527.10" ; transcript_name "ESYT2-201" ; transcript_support_level 1 ; transcript_type protein_coding
LMBR1--ESYT2 HAVANA mRNA 37727 65237 . + . FI_gene_label "ESYT2^ENSG00000117868.17" ; ID "LMBR1--ESYT2^ENST00000251527.10" ; Parent "LMBR1--ESYT2^ESYT2^ENSG00000117868.17" ; exon_id "ENSE00002700428.1" ; exon_number 1 ; gene_id "LMBR1--ESYT2^ESYT2^ENSG00000117868.17" ; gene_name ESYT2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000151436.3" ; havana_transcript "OTTHUMT00000322647.2" ; hgnc_id "HGNC:22211" ; level 2 ; orig_coord_info "chr7,158829089,158829418,-" ; protein_id "ENSP00000251527.6" ; tag basic appris_alternative_2 ; transcript_id "LMBR1--ESYT2^ENST00000251527.10" ; transcript_name "ESYT2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
LMBR1--ESYT2 HAVANA gene 1034 31326 . + . FI_gene_label "LMBR1^ENSG00000105983.22" ; ID "LMBR1--ESYT2^LMBR1^ENSG00000105983.22" ; ccdsid "CCDS5945.1" ; exon_id "ENSE00001936388.2" ; exon_number 1 ; gene_id "LMBR1--ESYT2^LMBR1^ENSG00000105983.22" ; gene_name LMBR1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000151510.8" ; havana_transcript "OTTHUMT00000347939.4" ; hgnc_id "HGNC:13243" ; level 2 ; orig_coord_info "chr7,156892928,156892993,-" ; protein_id "ENSP00000326604.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "LMBR1--ESYT2^ENST00000353442.10" ; transcript_name "LMBR1-201" ; transcript_support_level 1 ; transcript_type protein_coding
LMBR1--ESYT2 HAVANA mRNA 1034 31326 . + . FI_gene_label "LMBR1^ENSG00000105983.22" ; ID "LMBR1--ESYT2^ENST00000353442.10" ; Parent "LMBR1--ESYT2^LMBR1^ENSG00000105983.22" ; ccdsid "CCDS5945.1" ; exon_id "ENSE00001936388.2" ; exon_number 1 ; gene_id "LMBR1--ESYT2^LMBR1^ENSG00000105983.22" ; gene_name LMBR1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000151510.8" ; havana_transcript "OTTHUMT00000347939.4" ; hgnc_id "HGNC:13243" ; level 2 ; orig_coord_info "chr7,156892928,156892993,-" ; protein_id "ENSP00000326604.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "LMBR1--ESYT2^ENST00000353442.10" ; transcript_name "LMBR1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MARK2--CD44 HAVANA gene 28156 54525 . + . FI_gene_label "CD44^ENSG00000026508.20" ; ID "MARK2--CD44^CD44^ENSG00000026508.20" ; ccdsid "CCDS31457.1" ; exon_id "ENSE00003896435.1" ; exon_number 1 ; gene_id "MARK2--CD44^CD44^ENSG00000026508.20" ; gene_name CD44 ; gene_type protein_coding ; havana_gene "OTTHUMG00000044388.10" ; havana_transcript "OTTHUMT00000388924.1" ; hgnc_id "HGNC:1681" ; level 2 ; orig_coord_info "chr11,35139304,35139370,+" ; protein_id "ENSP00000263398.6" ; tag basic appris_alternative_2 CCDS ; transcript_id "MARK2--CD44^ENST00000263398.11" ; transcript_name "CD44-201" ; transcript_support_level 1 ; transcript_type protein_coding
MARK2--CD44 HAVANA mRNA 28156 54525 . + . FI_gene_label "CD44^ENSG00000026508.20" ; ID "MARK2--CD44^ENST00000263398.11" ; Parent "MARK2--CD44^CD44^ENSG00000026508.20" ; ccdsid "CCDS31457.1" ; exon_id "ENSE00003896435.1" ; exon_number 1 ; gene_id "MARK2--CD44^CD44^ENSG00000026508.20" ; gene_name CD44 ; gene_type protein_coding ; havana_gene "OTTHUMG00000044388.10" ; havana_transcript "OTTHUMT00000388924.1" ; hgnc_id "HGNC:1681" ; level 2 ; orig_coord_info "chr11,35139304,35139370,+" ; protein_id "ENSP00000263398.6" ; tag basic appris_alternative_2 CCDS ; transcript_id "MARK2--CD44^ENST00000263398.11" ; transcript_name "CD44-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MARK2--CD44 HAVANA gene 1166 23442 . + . FI_gene_label "MARK2^ENSG00000072518.22" ; ID "MARK2--CD44^MARK2^ENSG00000072518.22" ; ccdsid "CCDS53651.1" ; exon_id "ENSE00001475203.5" ; exon_number 1 ; gene_id "MARK2--CD44^MARK2^ENSG00000072518.22" ; gene_name MARK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000160504.7" ; havana_transcript "OTTHUMT00000396088.1" ; hgnc_id "HGNC:3332" ; level 2 ; orig_coord_info "chr11,63839507,63839560,+" ; protein_id "ENSP00000294247.9" ; tag basic CCDS ; transcript_id "MARK2--CD44^ENST00000350490.11" ; transcript_name "MARK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
MARK2--CD44 HAVANA mRNA 1166 23442 . + . FI_gene_label "MARK2^ENSG00000072518.22" ; ID "MARK2--CD44^ENST00000350490.11" ; Parent "MARK2--CD44^MARK2^ENSG00000072518.22" ; ccdsid "CCDS53651.1" ; exon_id "ENSE00001475203.5" ; exon_number 1 ; gene_id "MARK2--CD44^MARK2^ENSG00000072518.22" ; gene_name MARK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000160504.7" ; havana_transcript "OTTHUMT00000396088.1" ; hgnc_id "HGNC:3332" ; level 2 ; orig_coord_info "chr11,63839507,63839560,+" ; protein_id "ENSP00000294247.9" ; tag basic CCDS ; transcript_id "MARK2--CD44^ENST00000350490.11" ; transcript_name "MARK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MFSD6--TLK1 ENSEMBL gene 4932 16642 . + . FI_gene_label "MFSD6^ENSG00000151690.15" ; ID "MFSD6--TLK1^MFSD6^ENSG00000151690.15" ; ccdsid "CCDS2306.1" ; exon_id "ENSE00001263173.7" ; exon_number 1 ; gene_id "MFSD6--TLK1^MFSD6^ENSG00000151690.15" ; gene_name MFSD6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132671.5" ; hgnc_id "HGNC:24711" ; level 3 ; orig_coord_info "chr2,190436030,190437561,+" ; protein_id "ENSP00000281416.7" ; tag basic appris_principal_1 CCDS ; transcript_id "MFSD6--TLK1^ENST00000281416.11" ; transcript_name "MFSD6-201" ; transcript_support_level 1 ; transcript_type protein_coding
MFSD6--TLK1 ENSEMBL mRNA 4932 16642 . + . FI_gene_label "MFSD6^ENSG00000151690.15" ; ID "MFSD6--TLK1^ENST00000281416.11" ; Parent "MFSD6--TLK1^MFSD6^ENSG00000151690.15" ; ccdsid "CCDS2306.1" ; exon_id "ENSE00001263173.7" ; exon_number 1 ; gene_id "MFSD6--TLK1^MFSD6^ENSG00000151690.15" ; gene_name MFSD6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132671.5" ; hgnc_id "HGNC:24711" ; level 3 ; orig_coord_info "chr2,190436030,190437561,+" ; protein_id "ENSP00000281416.7" ; tag basic appris_principal_1 CCDS ; transcript_id "MFSD6--TLK1^ENST00000281416.11" ; transcript_name "MFSD6-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MFSD6--TLK1 HAVANA gene 23387 54345 . + . FI_gene_label "TLK1^ENSG00000198586.14" ; ID "MFSD6--TLK1^TLK1^ENSG00000198586.14" ; exon_id "ENSE00001657512.1" ; exon_number 1 ; gene_id "MFSD6--TLK1^TLK1^ENSG00000198586.14" ; gene_name TLK1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132243.7" ; havana_transcript "OTTHUMT00000333807.2" ; hgnc_id "HGNC:11841" ; level 2 ; orig_coord_info "chr2,171160290,171160428,-" ; protein_id "ENSP00000352810.3" ; tag not_organism_supported ; transcript_id "MFSD6--TLK1^ENST00000359766.7" ; transcript_name "TLK1-201" ; transcript_support_level 5 ; transcript_type nonsense_mediated_decay
MFSD6--TLK1 HAVANA mRNA 23387 54345 . + . FI_gene_label "TLK1^ENSG00000198586.14" ; ID "MFSD6--TLK1^ENST00000359766.7" ; Parent "MFSD6--TLK1^TLK1^ENSG00000198586.14" ; exon_id "ENSE00001657512.1" ; exon_number 1 ; gene_id "MFSD6--TLK1^TLK1^ENSG00000198586.14" ; gene_name TLK1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132243.7" ; havana_transcript "OTTHUMT00000333807.2" ; hgnc_id "HGNC:11841" ; level 2 ; orig_coord_info "chr2,171160290,171160428,-" ; protein_id "ENSP00000352810.3" ; tag not_organism_supported ; transcript_id "MFSD6--TLK1^ENST00000359766.7" ; transcript_name "TLK1-201" ; transcript_support_level 5 ; transcript_type nonsense_mediated_decay
L1 and L2 created:
MIR4713HG--GLDN HAVANA gene 6562 22094 . + . FI_gene_label "GLDN^ENSG00000186417.14" ; ID "MIR4713HG--GLDN^GLDN^ENSG00000186417.14" ; ccdsid "CCDS10140.2" ; exon_id "ENSE00001632503.4" ; exon_number 1 ; gene_id "MIR4713HG--GLDN^GLDN^ENSG00000186417.14" ; gene_name GLDN ; gene_type protein_coding ; havana_gene "OTTHUMG00000131746.7" ; havana_transcript "OTTHUMT00000254667.3" ; hgnc_id "HGNC:29514" ; level 2 ; orig_coord_info "chr15,51341685,51342047,+" ; protein_id "ENSP00000335196.6" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "MIR4713HG--GLDN^ENST00000335449.11" ; transcript_name "GLDN-201" ; transcript_support_level 2 ; transcript_type protein_coding
MIR4713HG--GLDN HAVANA mRNA 6562 22094 . + . FI_gene_label "GLDN^ENSG00000186417.14" ; ID "MIR4713HG--GLDN^ENST00000335449.11" ; Parent "MIR4713HG--GLDN^GLDN^ENSG00000186417.14" ; ccdsid "CCDS10140.2" ; exon_id "ENSE00001632503.4" ; exon_number 1 ; gene_id "MIR4713HG--GLDN^GLDN^ENSG00000186417.14" ; gene_name GLDN ; gene_type protein_coding ; havana_gene "OTTHUMG00000131746.7" ; havana_transcript "OTTHUMT00000254667.3" ; hgnc_id "HGNC:29514" ; level 2 ; orig_coord_info "chr15,51341685,51342047,+" ; protein_id "ENSP00000335196.6" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "MIR4713HG--GLDN^ENST00000335449.11" ; transcript_name "GLDN-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
NACA--PRIM1 HAVANA gene 18092 29866 . + . FI_gene_label "PRIM1^ENSG00000198056.15" ; ID "NACA--PRIM1^PRIM1^ENSG00000198056.15" ; ccdsid "CCDS44926.1" ; exon_id "ENSE00002392700.2" ; exon_number 1 ; gene_id "NACA--PRIM1^PRIM1^ENSG00000198056.15" ; gene_name PRIM1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000170034.8" ; havana_transcript "OTTHUMT00000406956.3" ; hgnc_id "HGNC:9369" ; level 2 ; orig_coord_info "chr12,56752196,56752298,-" ; protein_id "ENSP00000350491.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NACA--PRIM1^ENST00000338193.11" ; transcript_name "PRIM1-201" ; transcript_support_level 1 ; transcript_type protein_coding
NACA--PRIM1 HAVANA mRNA 18092 29866 . + . FI_gene_label "PRIM1^ENSG00000198056.15" ; ID "NACA--PRIM1^ENST00000338193.11" ; Parent "NACA--PRIM1^PRIM1^ENSG00000198056.15" ; ccdsid "CCDS44926.1" ; exon_id "ENSE00002392700.2" ; exon_number 1 ; gene_id "NACA--PRIM1^PRIM1^ENSG00000198056.15" ; gene_name PRIM1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000170034.8" ; havana_transcript "OTTHUMT00000406956.3" ; hgnc_id "HGNC:9369" ; level 2 ; orig_coord_info "chr12,56752196,56752298,-" ; protein_id "ENSP00000350491.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NACA--PRIM1^ENST00000338193.11" ; transcript_name "PRIM1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NACA--PRIM1 HAVANA gene 2140 14912 . + . FI_gene_label "NACA^ENSG00000196531.14" ; ID "NACA--PRIM1^NACA^ENSG00000196531.14" ; ccdsid "CCDS31837.1" ; exon_id "ENSE00003616038.1" ; exon_number 2 ; gene_id "NACA--PRIM1^NACA^ENSG00000196531.14" ; gene_name NACA ; gene_type protein_coding ; havana_gene "OTTHUMG00000170033.9" ; havana_transcript "OTTHUMT00000406953.2" ; hgnc_id "HGNC:7629" ; level 2 ; orig_coord_info "chr12,56724452,56724521,-" ; protein_id "ENSP00000349212.3" ; tag basic appris_principal_2 CCDS ; transcript_id "NACA--PRIM1^ENST00000356769.7" ; transcript_name "NACA-201" ; transcript_support_level 1 ; transcript_type protein_coding
NACA--PRIM1 HAVANA mRNA 2140 14912 . + . FI_gene_label "NACA^ENSG00000196531.14" ; ID "NACA--PRIM1^ENST00000356769.7" ; Parent "NACA--PRIM1^NACA^ENSG00000196531.14" ; ccdsid "CCDS31837.1" ; exon_id "ENSE00003616038.1" ; exon_number 2 ; gene_id "NACA--PRIM1^NACA^ENSG00000196531.14" ; gene_name NACA ; gene_type protein_coding ; havana_gene "OTTHUMG00000170033.9" ; havana_transcript "OTTHUMT00000406953.2" ; hgnc_id "HGNC:7629" ; level 2 ; orig_coord_info "chr12,56724452,56724521,-" ; protein_id "ENSP00000349212.3" ; tag basic appris_principal_2 CCDS ; transcript_id "NACA--PRIM1^ENST00000356769.7" ; transcript_name "NACA-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NFE2L2--CYCTP HAVANA gene 10354 16642 . + . FI_gene_label "NFE2L2^ENSG00000116044.16" ; ID "NFE2L2--CYCTP^NFE2L2^ENSG00000116044.16" ; ccdsid "CCDS42782.1" ; exon_id "ENSE00001782317.2" ; exon_number 1 ; gene_id "NFE2L2--CYCTP^NFE2L2^ENSG00000116044.16" ; gene_name NFE2L2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133620.18" ; havana_transcript "OTTHUMT00000257752.5" ; hgnc_id "HGNC:7782" ; level 2 ; orig_coord_info "chr2,177264532,177264576,-" ; protein_id "ENSP00000380252.3" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "NFE2L2--CYCTP^ENST00000397062.8" ; transcript_name "NFE2L2-201" ; transcript_support_level 1 ; transcript_type protein_coding
NFE2L2--CYCTP HAVANA mRNA 10354 16642 . + . FI_gene_label "NFE2L2^ENSG00000116044.16" ; ID "NFE2L2--CYCTP^ENST00000397062.8" ; Parent "NFE2L2--CYCTP^NFE2L2^ENSG00000116044.16" ; ccdsid "CCDS42782.1" ; exon_id "ENSE00001782317.2" ; exon_number 1 ; gene_id "NFE2L2--CYCTP^NFE2L2^ENSG00000116044.16" ; gene_name NFE2L2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133620.18" ; havana_transcript "OTTHUMT00000257752.5" ; hgnc_id "HGNC:7782" ; level 2 ; orig_coord_info "chr2,177264532,177264576,-" ; protein_id "ENSP00000380252.3" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "NFE2L2--CYCTP^ENST00000397062.8" ; transcript_name "NFE2L2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NFE2L2--PDE11A HAVANA gene 21005 60551 . + . FI_gene_label "PDE11A^ENSG00000128655.18" ; ID "NFE2L2--PDE11A^PDE11A^ENSG00000128655.18" ; ccdsid "CCDS33334.1" ; exon_id "ENSE00001125342.6" ; exon_number 1 ; gene_id "NFE2L2--PDE11A^PDE11A^ENSG00000128655.18" ; gene_name PDE11A ; gene_type protein_coding ; havana_gene "OTTHUMG00000154188.8" ; havana_transcript "OTTHUMT00000334313.3" ; hgnc_id "HGNC:8773" ; level 2 ; orig_coord_info "chr2,178071526,178072437,-" ; protein_id "ENSP00000286063.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NFE2L2--PDE11A^ENST00000286063.11" ; transcript_name "PDE11A-201" ; transcript_support_level 1 ; transcript_type protein_coding
NFE2L2--PDE11A HAVANA mRNA 21005 60551 . + . FI_gene_label "PDE11A^ENSG00000128655.18" ; ID "NFE2L2--PDE11A^ENST00000286063.11" ; Parent "NFE2L2--PDE11A^PDE11A^ENSG00000128655.18" ; ccdsid "CCDS33334.1" ; exon_id "ENSE00001125342.6" ; exon_number 1 ; gene_id "NFE2L2--PDE11A^PDE11A^ENSG00000128655.18" ; gene_name PDE11A ; gene_type protein_coding ; havana_gene "OTTHUMG00000154188.8" ; havana_transcript "OTTHUMT00000334313.3" ; hgnc_id "HGNC:8773" ; level 2 ; orig_coord_info "chr2,178071526,178072437,-" ; protein_id "ENSP00000286063.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NFE2L2--PDE11A^ENST00000286063.11" ; transcript_name "PDE11A-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NFE2L2--PDE11A HAVANA gene 10354 16642 . + . FI_gene_label "NFE2L2^ENSG00000116044.16" ; ID "NFE2L2--PDE11A^NFE2L2^ENSG00000116044.16" ; ccdsid "CCDS42782.1" ; exon_id "ENSE00001782317.2" ; exon_number 1 ; gene_id "NFE2L2--PDE11A^NFE2L2^ENSG00000116044.16" ; gene_name NFE2L2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133620.18" ; havana_transcript "OTTHUMT00000257752.5" ; hgnc_id "HGNC:7782" ; level 2 ; orig_coord_info "chr2,177264532,177264576,-" ; protein_id "ENSP00000380252.3" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "NFE2L2--PDE11A^ENST00000397062.8" ; transcript_name "NFE2L2-201" ; transcript_support_level 1 ; transcript_type protein_coding
NFE2L2--PDE11A HAVANA mRNA 10354 16642 . + . FI_gene_label "NFE2L2^ENSG00000116044.16" ; ID "NFE2L2--PDE11A^ENST00000397062.8" ; Parent "NFE2L2--PDE11A^NFE2L2^ENSG00000116044.16" ; ccdsid "CCDS42782.1" ; exon_id "ENSE00001782317.2" ; exon_number 1 ; gene_id "NFE2L2--PDE11A^NFE2L2^ENSG00000116044.16" ; gene_name NFE2L2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133620.18" ; havana_transcript "OTTHUMT00000257752.5" ; hgnc_id "HGNC:7782" ; level 2 ; orig_coord_info "chr2,177264532,177264576,-" ; protein_id "ENSP00000380252.3" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "NFE2L2--PDE11A^ENST00000397062.8" ; transcript_name "NFE2L2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA3--PCDHA13 HAVANA gene 8595 17035 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA3--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA3--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA3--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA3--PCDHA13 HAVANA mRNA 8595 17035 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA3--PCDHA13^ENST00000289272.3" ; Parent "PCDHA3--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA3--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA3--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA3--PCDHA13 HAVANA gene 1001 5594 . + . FI_gene_label "PCDHA3^ENSG00000255408.4" ; ID "PCDHA3--PCDHA13^PCDHA3^ENSG00000255408.4" ; exon_id "ENSE00002153432.3" ; exon_number 1 ; gene_id "PCDHA3--PCDHA13^PCDHA3^ENSG00000255408.4" ; gene_name PCDHA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163357.4" ; havana_transcript "OTTHUMT00000477482.1" ; hgnc_id "HGNC:8669" ; level 2 ; orig_coord_info "chr5,140801198,140803669,+" ; protein_id "ENSP00000434086.2" ; tag RNA_Seq_supported_partial basic ; transcript_id "PCDHA3--PCDHA13^ENST00000532566.3" ; transcript_name "PCDHA3-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA3--PCDHA13 HAVANA mRNA 1001 5594 . + . FI_gene_label "PCDHA3^ENSG00000255408.4" ; ID "PCDHA3--PCDHA13^ENST00000532566.3" ; Parent "PCDHA3--PCDHA13^PCDHA3^ENSG00000255408.4" ; exon_id "ENSE00002153432.3" ; exon_number 1 ; gene_id "PCDHA3--PCDHA13^PCDHA3^ENSG00000255408.4" ; gene_name PCDHA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163357.4" ; havana_transcript "OTTHUMT00000477482.1" ; hgnc_id "HGNC:8669" ; level 2 ; orig_coord_info "chr5,140801198,140803669,+" ; protein_id "ENSP00000434086.2" ; tag RNA_Seq_supported_partial basic ; transcript_id "PCDHA3--PCDHA13^ENST00000532566.3" ; transcript_name "PCDHA3-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA3--PCDHAC1 HAVANA gene 8595 18610 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA3--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA3--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA3--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA3--PCDHAC1 HAVANA mRNA 8595 18610 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA3--PCDHAC1^ENST00000253807.3" ; Parent "PCDHA3--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA3--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA3--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA3--PCDHAC1 HAVANA gene 1001 5594 . + . FI_gene_label "PCDHA3^ENSG00000255408.4" ; ID "PCDHA3--PCDHAC1^PCDHA3^ENSG00000255408.4" ; exon_id "ENSE00002153432.3" ; exon_number 1 ; gene_id "PCDHA3--PCDHAC1^PCDHA3^ENSG00000255408.4" ; gene_name PCDHA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163357.4" ; havana_transcript "OTTHUMT00000477482.1" ; hgnc_id "HGNC:8669" ; level 2 ; orig_coord_info "chr5,140801198,140803669,+" ; protein_id "ENSP00000434086.2" ; tag RNA_Seq_supported_partial basic ; transcript_id "PCDHA3--PCDHAC1^ENST00000532566.3" ; transcript_name "PCDHA3-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA3--PCDHAC1 HAVANA mRNA 1001 5594 . + . FI_gene_label "PCDHA3^ENSG00000255408.4" ; ID "PCDHA3--PCDHAC1^ENST00000532566.3" ; Parent "PCDHA3--PCDHAC1^PCDHA3^ENSG00000255408.4" ; exon_id "ENSE00002153432.3" ; exon_number 1 ; gene_id "PCDHA3--PCDHAC1^PCDHA3^ENSG00000255408.4" ; gene_name PCDHA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163357.4" ; havana_transcript "OTTHUMT00000477482.1" ; hgnc_id "HGNC:8669" ; level 2 ; orig_coord_info "chr5,140801198,140803669,+" ; protein_id "ENSP00000434086.2" ; tag RNA_Seq_supported_partial basic ; transcript_id "PCDHA3--PCDHAC1^ENST00000532566.3" ; transcript_name "PCDHA3-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA3--PCDHAC2 HAVANA gene 8601 19336 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA3--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA3--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA3--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA3--PCDHAC2 HAVANA mRNA 8601 19336 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA3--PCDHAC2^ENST00000289269.7" ; Parent "PCDHA3--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA3--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA3--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA3--PCDHAC2 HAVANA gene 1001 5594 . + . FI_gene_label "PCDHA3^ENSG00000255408.4" ; ID "PCDHA3--PCDHAC2^PCDHA3^ENSG00000255408.4" ; exon_id "ENSE00002153432.3" ; exon_number 1 ; gene_id "PCDHA3--PCDHAC2^PCDHA3^ENSG00000255408.4" ; gene_name PCDHA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163357.4" ; havana_transcript "OTTHUMT00000477482.1" ; hgnc_id "HGNC:8669" ; level 2 ; orig_coord_info "chr5,140801198,140803669,+" ; protein_id "ENSP00000434086.2" ; tag RNA_Seq_supported_partial basic ; transcript_id "PCDHA3--PCDHAC2^ENST00000532566.3" ; transcript_name "PCDHA3-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA3--PCDHAC2 HAVANA mRNA 1001 5594 . + . FI_gene_label "PCDHA3^ENSG00000255408.4" ; ID "PCDHA3--PCDHAC2^ENST00000532566.3" ; Parent "PCDHA3--PCDHAC2^PCDHA3^ENSG00000255408.4" ; exon_id "ENSE00002153432.3" ; exon_number 1 ; gene_id "PCDHA3--PCDHAC2^PCDHA3^ENSG00000255408.4" ; gene_name PCDHA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163357.4" ; havana_transcript "OTTHUMT00000477482.1" ; hgnc_id "HGNC:8669" ; level 2 ; orig_coord_info "chr5,140801198,140803669,+" ; protein_id "ENSP00000434086.2" ; tag RNA_Seq_supported_partial basic ; transcript_id "PCDHA3--PCDHAC2^ENST00000532566.3" ; transcript_name "PCDHA3-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA4--PCDHA13 HAVANA gene 14666 23106 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA4--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA4--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA4--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA4--PCDHA13 HAVANA mRNA 14666 23106 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA4--PCDHA13^ENST00000289272.3" ; Parent "PCDHA4--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA4--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA4--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA4--PCDHA13 ENSEMBL gene 1001 3590 . + . FI_gene_label "PCDHA4^ENSG00000204967.12" ; ID "PCDHA4--PCDHA13^PCDHA4^ENSG00000204967.12" ; exon_id "ENSE00003735925.1" ; exon_number 1 ; gene_id "PCDHA4--PCDHA13^PCDHA4^ENSG00000204967.12" ; gene_name PCDHA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163360.5" ; hgnc_id "HGNC:8670" ; level 3 ; orig_coord_info "chr5,140806929,140806945,+" ; protein_id "ENSP00000367365.4" ; tag basic ; transcript_id "PCDHA4--PCDHA13^ENST00000378125.4" ; transcript_name "PCDHA4-201" ; transcript_support_level 5 ; transcript_type protein_coding
PCDHA4--PCDHA13 ENSEMBL mRNA 1001 3590 . + . FI_gene_label "PCDHA4^ENSG00000204967.12" ; ID "PCDHA4--PCDHA13^ENST00000378125.4" ; Parent "PCDHA4--PCDHA13^PCDHA4^ENSG00000204967.12" ; exon_id "ENSE00003735925.1" ; exon_number 1 ; gene_id "PCDHA4--PCDHA13^PCDHA4^ENSG00000204967.12" ; gene_name PCDHA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163360.5" ; hgnc_id "HGNC:8670" ; level 3 ; orig_coord_info "chr5,140806929,140806945,+" ; protein_id "ENSP00000367365.4" ; tag basic ; transcript_id "PCDHA4--PCDHA13^ENST00000378125.4" ; transcript_name "PCDHA4-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
PCDHA4--PCDHAC1 HAVANA gene 14666 24681 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA4--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA4--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA4--PCDHAC1 HAVANA mRNA 14666 24681 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA4--PCDHAC1^ENST00000253807.3" ; Parent "PCDHA4--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA4--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA4--PCDHAC1 ENSEMBL gene 1001 3590 . + . FI_gene_label "PCDHA4^ENSG00000204967.12" ; ID "PCDHA4--PCDHAC1^PCDHA4^ENSG00000204967.12" ; exon_id "ENSE00003735925.1" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC1^PCDHA4^ENSG00000204967.12" ; gene_name PCDHA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163360.5" ; hgnc_id "HGNC:8670" ; level 3 ; orig_coord_info "chr5,140806929,140806945,+" ; protein_id "ENSP00000367365.4" ; tag basic ; transcript_id "PCDHA4--PCDHAC1^ENST00000378125.4" ; transcript_name "PCDHA4-201" ; transcript_support_level 5 ; transcript_type protein_coding
PCDHA4--PCDHAC1 ENSEMBL mRNA 1001 3590 . + . FI_gene_label "PCDHA4^ENSG00000204967.12" ; ID "PCDHA4--PCDHAC1^ENST00000378125.4" ; Parent "PCDHA4--PCDHAC1^PCDHA4^ENSG00000204967.12" ; exon_id "ENSE00003735925.1" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC1^PCDHA4^ENSG00000204967.12" ; gene_name PCDHA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163360.5" ; hgnc_id "HGNC:8670" ; level 3 ; orig_coord_info "chr5,140806929,140806945,+" ; protein_id "ENSP00000367365.4" ; tag basic ; transcript_id "PCDHA4--PCDHAC1^ENST00000378125.4" ; transcript_name "PCDHA4-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
PCDHA4--PCDHAC2 HAVANA gene 14672 25407 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA4--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA4--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA4--PCDHAC2 HAVANA mRNA 14672 25407 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA4--PCDHAC2^ENST00000289269.7" ; Parent "PCDHA4--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA4--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA4--PCDHAC2 ENSEMBL gene 1001 3590 . + . FI_gene_label "PCDHA4^ENSG00000204967.12" ; ID "PCDHA4--PCDHAC2^PCDHA4^ENSG00000204967.12" ; exon_id "ENSE00003735925.1" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC2^PCDHA4^ENSG00000204967.12" ; gene_name PCDHA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163360.5" ; hgnc_id "HGNC:8670" ; level 3 ; orig_coord_info "chr5,140806929,140806945,+" ; protein_id "ENSP00000367365.4" ; tag basic ; transcript_id "PCDHA4--PCDHAC2^ENST00000378125.4" ; transcript_name "PCDHA4-201" ; transcript_support_level 5 ; transcript_type protein_coding
PCDHA4--PCDHAC2 ENSEMBL mRNA 1001 3590 . + . FI_gene_label "PCDHA4^ENSG00000204967.12" ; ID "PCDHA4--PCDHAC2^ENST00000378125.4" ; Parent "PCDHA4--PCDHAC2^PCDHA4^ENSG00000204967.12" ; exon_id "ENSE00003735925.1" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC2^PCDHA4^ENSG00000204967.12" ; gene_name PCDHA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163360.5" ; hgnc_id "HGNC:8670" ; level 3 ; orig_coord_info "chr5,140806929,140806945,+" ; protein_id "ENSP00000367365.4" ; tag basic ; transcript_id "PCDHA4--PCDHAC2^ENST00000378125.4" ; transcript_name "PCDHA4-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
PCDHA6--PCDHA13 HAVANA gene 7268 15708 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA6--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA6--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA6--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA6--PCDHA13 HAVANA mRNA 7268 15708 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA6--PCDHA13^ENST00000289272.3" ; Parent "PCDHA6--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA6--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA6--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA6--PCDHA13 HAVANA gene 1001 4267 . + . FI_gene_label "PCDHA6^ENSG00000081842.18" ; ID "PCDHA6--PCDHA13^PCDHA6^ENSG00000081842.18" ; exon_id "ENSE00001476364.4" ; exon_number 1 ; gene_id "PCDHA6--PCDHA13^PCDHA6^ENSG00000081842.18" ; gene_name PCDHA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163353.5" ; havana_transcript "OTTHUMT00000477550.1" ; hgnc_id "HGNC:8672" ; level 2 ; orig_coord_info "chr5,140828092,140830500,+" ; protein_id "ENSP00000367366.4" ; tag upstream_ATG RNA_Seq_supported_partial basic ; transcript_id "PCDHA6--PCDHA13^ENST00000378126.4" ; transcript_name "PCDHA6-201" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA6--PCDHA13 HAVANA mRNA 1001 4267 . + . FI_gene_label "PCDHA6^ENSG00000081842.18" ; ID "PCDHA6--PCDHA13^ENST00000378126.4" ; Parent "PCDHA6--PCDHA13^PCDHA6^ENSG00000081842.18" ; exon_id "ENSE00001476364.4" ; exon_number 1 ; gene_id "PCDHA6--PCDHA13^PCDHA6^ENSG00000081842.18" ; gene_name PCDHA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163353.5" ; havana_transcript "OTTHUMT00000477550.1" ; hgnc_id "HGNC:8672" ; level 2 ; orig_coord_info "chr5,140828092,140830500,+" ; protein_id "ENSP00000367366.4" ; tag upstream_ATG RNA_Seq_supported_partial basic ; transcript_id "PCDHA6--PCDHA13^ENST00000378126.4" ; transcript_name "PCDHA6-201" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA6--PCDHAC1 HAVANA gene 7268 17283 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA6--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA6--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA6--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA6--PCDHAC1 HAVANA mRNA 7268 17283 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA6--PCDHAC1^ENST00000253807.3" ; Parent "PCDHA6--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA6--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA6--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA6--PCDHAC1 HAVANA gene 1001 4267 . + . FI_gene_label "PCDHA6^ENSG00000081842.18" ; ID "PCDHA6--PCDHAC1^PCDHA6^ENSG00000081842.18" ; exon_id "ENSE00001476364.4" ; exon_number 1 ; gene_id "PCDHA6--PCDHAC1^PCDHA6^ENSG00000081842.18" ; gene_name PCDHA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163353.5" ; havana_transcript "OTTHUMT00000477550.1" ; hgnc_id "HGNC:8672" ; level 2 ; orig_coord_info "chr5,140828092,140830500,+" ; protein_id "ENSP00000367366.4" ; tag upstream_ATG RNA_Seq_supported_partial basic ; transcript_id "PCDHA6--PCDHAC1^ENST00000378126.4" ; transcript_name "PCDHA6-201" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA6--PCDHAC1 HAVANA mRNA 1001 4267 . + . FI_gene_label "PCDHA6^ENSG00000081842.18" ; ID "PCDHA6--PCDHAC1^ENST00000378126.4" ; Parent "PCDHA6--PCDHAC1^PCDHA6^ENSG00000081842.18" ; exon_id "ENSE00001476364.4" ; exon_number 1 ; gene_id "PCDHA6--PCDHAC1^PCDHA6^ENSG00000081842.18" ; gene_name PCDHA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163353.5" ; havana_transcript "OTTHUMT00000477550.1" ; hgnc_id "HGNC:8672" ; level 2 ; orig_coord_info "chr5,140828092,140830500,+" ; protein_id "ENSP00000367366.4" ; tag upstream_ATG RNA_Seq_supported_partial basic ; transcript_id "PCDHA6--PCDHAC1^ENST00000378126.4" ; transcript_name "PCDHA6-201" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA6--PCDHAC2 HAVANA gene 7274 18009 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA6--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA6--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA6--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA6--PCDHAC2 HAVANA mRNA 7274 18009 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA6--PCDHAC2^ENST00000289269.7" ; Parent "PCDHA6--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA6--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA6--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA6--PCDHAC2 HAVANA gene 1001 4267 . + . FI_gene_label "PCDHA6^ENSG00000081842.18" ; ID "PCDHA6--PCDHAC2^PCDHA6^ENSG00000081842.18" ; exon_id "ENSE00001476364.4" ; exon_number 1 ; gene_id "PCDHA6--PCDHAC2^PCDHA6^ENSG00000081842.18" ; gene_name PCDHA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163353.5" ; havana_transcript "OTTHUMT00000477550.1" ; hgnc_id "HGNC:8672" ; level 2 ; orig_coord_info "chr5,140828092,140830500,+" ; protein_id "ENSP00000367366.4" ; tag upstream_ATG RNA_Seq_supported_partial basic ; transcript_id "PCDHA6--PCDHAC2^ENST00000378126.4" ; transcript_name "PCDHA6-201" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA6--PCDHAC2 HAVANA mRNA 1001 4267 . + . FI_gene_label "PCDHA6^ENSG00000081842.18" ; ID "PCDHA6--PCDHAC2^ENST00000378126.4" ; Parent "PCDHA6--PCDHAC2^PCDHA6^ENSG00000081842.18" ; exon_id "ENSE00001476364.4" ; exon_number 1 ; gene_id "PCDHA6--PCDHAC2^PCDHA6^ENSG00000081842.18" ; gene_name PCDHA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163353.5" ; havana_transcript "OTTHUMT00000477550.1" ; hgnc_id "HGNC:8672" ; level 2 ; orig_coord_info "chr5,140828092,140830500,+" ; protein_id "ENSP00000367366.4" ; tag upstream_ATG RNA_Seq_supported_partial basic ; transcript_id "PCDHA6--PCDHAC2^ENST00000378126.4" ; transcript_name "PCDHA6-201" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGA10 HAVANA gene 7742 17195 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGA5--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA5--PCDHGA10 HAVANA mRNA 7742 17195 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGA5--PCDHGA10^ENST00000398610.2" ; Parent "PCDHGA5--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGA10 HAVANA gene 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGA10^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA10^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGA10^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA5--PCDHGA10 HAVANA mRNA 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGA10^ENST00000611914.1" ; Parent "PCDHGA5--PCDHGA10^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA10^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGA10^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGA11 HAVANA gene 7557 16362 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGA5--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA5--PCDHGA11 HAVANA mRNA 7557 16362 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGA5--PCDHGA11^ENST00000398587.7" ; Parent "PCDHGA5--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGA11 HAVANA gene 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGA11^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA11^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGA11^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA5--PCDHGA11 HAVANA mRNA 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGA11^ENST00000611914.1" ; Parent "PCDHGA5--PCDHGA11^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA11^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGA11^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGA12 HAVANA gene 7553 15445 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGA5--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA5--PCDHGA12 HAVANA mRNA 7553 15445 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGA5--PCDHGA12^ENST00000252085.4" ; Parent "PCDHGA5--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGA12 HAVANA gene 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGA12^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA12^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGA12^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA5--PCDHGA12 HAVANA mRNA 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGA12^ENST00000611914.1" ; Parent "PCDHGA5--PCDHGA12^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA12^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGA12^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGA8 HAVANA gene 10029 19209 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGA5--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA5--PCDHGA8 HAVANA mRNA 10029 19209 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGA5--PCDHGA8^ENST00000398604.3" ; Parent "PCDHGA5--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGA8 HAVANA gene 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGA8^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA8^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGA8^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA5--PCDHGA8 HAVANA mRNA 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGA8^ENST00000611914.1" ; Parent "PCDHGA5--PCDHGA8^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA8^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGA8^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGA9 HAVANA gene 7574 15301 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGA5--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA5--PCDHGA9 HAVANA mRNA 7574 15301 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGA5--PCDHGA9^ENST00000573521.1" ; Parent "PCDHGA5--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGA9 HAVANA gene 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGA9^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA9^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGA9^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA5--PCDHGA9 HAVANA mRNA 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGA9^ENST00000611914.1" ; Parent "PCDHGA5--PCDHGA9^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA9^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGA9^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGB6 HAVANA gene 7735 17334 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGA5--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA5--PCDHGB6 HAVANA mRNA 7735 17334 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGA5--PCDHGB6^ENST00000520790.1" ; Parent "PCDHGA5--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGB6 HAVANA gene 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGB6^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGB6^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGB6^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA5--PCDHGB6 HAVANA mRNA 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGB6^ENST00000611914.1" ; Parent "PCDHGA5--PCDHGB6^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGB6^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGB6^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGB7 HAVANA gene 7585 15514 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGA5--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA5--PCDHGB7 HAVANA mRNA 7585 15514 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGA5--PCDHGB7^ENST00000398594.4" ; Parent "PCDHGA5--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGB7 HAVANA gene 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGB7^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGB7^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGB7^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA5--PCDHGB7 HAVANA mRNA 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGB7^ENST00000611914.1" ; Parent "PCDHGA5--PCDHGB7^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGB7^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGB7^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGC3 HAVANA gene 7572 17758 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGA5--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA5--PCDHGC3 HAVANA mRNA 7572 17758 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGA5--PCDHGC3^ENST00000308177.5" ; Parent "PCDHGA5--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGC3 HAVANA gene 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGC3^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGC3^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGC3^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA5--PCDHGC3 HAVANA mRNA 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGC3^ENST00000611914.1" ; Parent "PCDHGA5--PCDHGC3^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGC3^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGC3^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGC4 HAVANA gene 7730 15526 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGA5--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA5--PCDHGC4 HAVANA mRNA 7730 15526 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGA5--PCDHGC4^ENST00000306593.1" ; Parent "PCDHGA5--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGC4 HAVANA gene 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGC4^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGC4^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGC4^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA5--PCDHGC4 HAVANA mRNA 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGC4^ENST00000611914.1" ; Parent "PCDHGA5--PCDHGC4^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGC4^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGC4^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGC5 HAVANA gene 7553 15578 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGA5--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA5--PCDHGC5 HAVANA mRNA 7553 15578 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGA5--PCDHGC5^ENST00000252087.3" ; Parent "PCDHGA5--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGC5 HAVANA gene 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGC5^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGC5^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGC5^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA5--PCDHGC5 HAVANA mRNA 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGC5^ENST00000611914.1" ; Parent "PCDHGA5--PCDHGC5^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGC5^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGC5^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA10 HAVANA gene 6778 16231 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA10 HAVANA mRNA 6778 16231 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGB2--PCDHGA10^ENST00000398610.2" ; Parent "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA10 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA10 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA10^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA11 HAVANA gene 6593 15398 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA11 HAVANA mRNA 6593 15398 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGB2--PCDHGA11^ENST00000398587.7" ; Parent "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA11 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA11 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA11^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA12 HAVANA gene 6589 14481 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA12 HAVANA mRNA 6589 14481 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGB2--PCDHGA12^ENST00000252085.4" ; Parent "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA12 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA12 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA12^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA8 HAVANA gene 9065 18245 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA8 HAVANA mRNA 9065 18245 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGB2--PCDHGA8^ENST00000398604.3" ; Parent "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA8 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA8 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA8^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA9 HAVANA gene 6610 14337 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA9 HAVANA mRNA 6610 14337 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGB2--PCDHGA9^ENST00000573521.1" ; Parent "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA9 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA9 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA9^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGB6 HAVANA gene 6771 16370 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGB6 HAVANA mRNA 6771 16370 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGB2--PCDHGB6^ENST00000520790.1" ; Parent "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGB6 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGB6 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGB6^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGB7 HAVANA gene 6621 14550 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGB7 HAVANA mRNA 6621 14550 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGB2--PCDHGB7^ENST00000398594.4" ; Parent "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGB7 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGB7 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGB7^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC3 HAVANA gene 6608 16794 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGC3 HAVANA mRNA 6608 16794 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGB2--PCDHGC3^ENST00000308177.5" ; Parent "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC3 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGC3 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC3^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC4 HAVANA gene 6766 14562 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGC4 HAVANA mRNA 6766 14562 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGB2--PCDHGC4^ENST00000306593.1" ; Parent "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC4 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGC4 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC4^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC5 HAVANA gene 6589 14614 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGC5 HAVANA mRNA 6589 14614 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGB2--PCDHGC5^ENST00000252087.3" ; Parent "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC5 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGC5 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC5^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PDS5B--FRY HAVANA gene 1001 45158 . + . FI_gene_label "PDS5B^ENSG00000083642.19" ; ID "PDS5B--FRY^PDS5B^ENSG00000083642.19" ; ccdsid "CCDS41878.1" ; exon_id "ENSE00003585910.1" ; exon_number 2 ; gene_id "PDS5B--FRY^PDS5B^ENSG00000083642.19" ; gene_name PDS5B ; gene_type protein_coding ; havana_gene "OTTHUMG00000016704.6" ; havana_transcript "OTTHUMT00000044428.4" ; hgnc_id "HGNC:20418" ; level 2 ; orig_coord_info "chr13,32648773,32648880,+" ; protein_id "ENSP00000313851.10" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PDS5B--FRY^ENST00000315596.15" ; transcript_name "PDS5B-201" ; transcript_support_level 1 ; transcript_type protein_coding
PDS5B--FRY HAVANA mRNA 1001 45158 . + . FI_gene_label "PDS5B^ENSG00000083642.19" ; ID "PDS5B--FRY^ENST00000315596.15" ; Parent "PDS5B--FRY^PDS5B^ENSG00000083642.19" ; ccdsid "CCDS41878.1" ; exon_id "ENSE00003585910.1" ; exon_number 2 ; gene_id "PDS5B--FRY^PDS5B^ENSG00000083642.19" ; gene_name PDS5B ; gene_type protein_coding ; havana_gene "OTTHUMG00000016704.6" ; havana_transcript "OTTHUMT00000044428.4" ; hgnc_id "HGNC:20418" ; level 2 ; orig_coord_info "chr13,32648773,32648880,+" ; protein_id "ENSP00000313851.10" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PDS5B--FRY^ENST00000315596.15" ; transcript_name "PDS5B-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PDS5B--FRY HAVANA gene 61955 65645 . + . FI_gene_label "FRY^ENSG00000073910.23" ; ID "PDS5B--FRY^FRY^ENSG00000073910.23" ; exon_id "ENSE00001591297.1" ; exon_number 1 ; gene_id "PDS5B--FRY^FRY^ENSG00000073910.23" ; gene_name FRY ; gene_type protein_coding ; havana_gene "OTTHUMG00000016696.9" ; havana_transcript "OTTHUMT00000044407.2" ; hgnc_id "HGNC:20367" ; level 2 ; orig_coord_info "chr13,32061103,32061163,+" ; protein_id "ENSP00000398010.1" ; tag CAGE_supported_TSS mRNA_end_NF cds_end_NF not_organism_supported ; transcript_id "PDS5B--FRY^ENST00000436046.1" ; transcript_name "FRY-204" ; transcript_support_level 5 ; transcript_type protein_coding
PDS5B--FRY HAVANA mRNA 61955 65645 . + . FI_gene_label "FRY^ENSG00000073910.23" ; ID "PDS5B--FRY^ENST00000436046.1" ; Parent "PDS5B--FRY^FRY^ENSG00000073910.23" ; exon_id "ENSE00001591297.1" ; exon_number 1 ; gene_id "PDS5B--FRY^FRY^ENSG00000073910.23" ; gene_name FRY ; gene_type protein_coding ; havana_gene "OTTHUMG00000016696.9" ; havana_transcript "OTTHUMT00000044407.2" ; hgnc_id "HGNC:20367" ; level 2 ; orig_coord_info "chr13,32061103,32061163,+" ; protein_id "ENSP00000398010.1" ; tag CAGE_supported_TSS mRNA_end_NF cds_end_NF not_organism_supported ; transcript_id "PDS5B--FRY^ENST00000436046.1" ; transcript_name "FRY-204" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
RBM14--RBM4 HAVANA gene 15043 21268 . + . FI_gene_label "RBM4^ENSG00000173933.21" ; ID "RBM14--RBM4^RBM4^ENSG00000173933.21" ; ccdsid "CCDS41676.1" ; exon_id "ENSE00003513724.1" ; exon_number 2 ; gene_id "RBM14--RBM4^RBM4^ENSG00000173933.21" ; gene_name RBM4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000154171.7" ; havana_transcript "OTTHUMT00000334210.2" ; hgnc_id "HGNC:9901" ; level 2 ; orig_coord_info "chr11,66639712,66640123,+" ; protein_id "ENSP00000309166.8" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RBM14--RBM4^ENST00000310092.12" ; transcript_name "RBM4-201" ; transcript_support_level 1 ; transcript_type protein_coding
RBM14--RBM4 HAVANA mRNA 15043 21268 . + . FI_gene_label "RBM4^ENSG00000173933.21" ; ID "RBM14--RBM4^ENST00000310092.12" ; Parent "RBM14--RBM4^RBM4^ENSG00000173933.21" ; ccdsid "CCDS41676.1" ; exon_id "ENSE00003513724.1" ; exon_number 2 ; gene_id "RBM14--RBM4^RBM4^ENSG00000173933.21" ; gene_name RBM4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000154171.7" ; havana_transcript "OTTHUMT00000334210.2" ; hgnc_id "HGNC:9901" ; level 2 ; orig_coord_info "chr11,66639712,66640123,+" ; protein_id "ENSP00000309166.8" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RBM14--RBM4^ENST00000310092.12" ; transcript_name "RBM4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RBM14--RBM4 HAVANA gene 1005 12006 . + . FI_gene_label "RBM14^ENSG00000239306.5" ; ID "RBM14--RBM4^RBM14^ENSG00000239306.5" ; ccdsid "CCDS8147.1" ; exon_id "ENSE00003902856.1" ; exon_number 1 ; gene_id "RBM14--RBM4^RBM14^ENSG00000239306.5" ; gene_name RBM14 ; gene_type protein_coding ; havana_gene "OTTHUMG00000140380.5" ; havana_transcript "OTTHUMT00000277128.1" ; hgnc_id "HGNC:14219" ; level 2 ; orig_coord_info "chr11,66616721,66617057,+" ; protein_id "ENSP00000311747.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RBM14--RBM4^ENST00000310137.5" ; transcript_name "RBM14-201" ; transcript_support_level 1 ; transcript_type protein_coding
RBM14--RBM4 HAVANA mRNA 1005 12006 . + . FI_gene_label "RBM14^ENSG00000239306.5" ; ID "RBM14--RBM4^ENST00000310137.5" ; Parent "RBM14--RBM4^RBM14^ENSG00000239306.5" ; ccdsid "CCDS8147.1" ; exon_id "ENSE00003902856.1" ; exon_number 1 ; gene_id "RBM14--RBM4^RBM14^ENSG00000239306.5" ; gene_name RBM14 ; gene_type protein_coding ; havana_gene "OTTHUMG00000140380.5" ; havana_transcript "OTTHUMT00000277128.1" ; hgnc_id "HGNC:14219" ; level 2 ; orig_coord_info "chr11,66616721,66617057,+" ; protein_id "ENSP00000311747.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RBM14--RBM4^ENST00000310137.5" ; transcript_name "RBM14-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RHPN2--RGS9 HAVANA gene 1001 19023 . + . FI_gene_label "RHPN2^ENSG00000131941.8" ; ID "RHPN2--RGS9^RHPN2^ENSG00000131941.8" ; ccdsid "CCDS12427.1" ; exon_id "ENSE00003607533.1" ; exon_number 1 ; gene_id "RHPN2--RGS9^RHPN2^ENSG00000131941.8" ; gene_name RHPN2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000180340.4" ; havana_transcript "OTTHUMT00000450828.3" ; hgnc_id "HGNC:19974" ; level 2 ; orig_coord_info "chr19,33064784,33064852,-" ; protein_id "ENSP00000254260.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RHPN2--RGS9^ENST00000254260.8" ; transcript_name "RHPN2-201" ; transcript_support_level 1 ; transcript_type protein_coding
RHPN2--RGS9 HAVANA mRNA 1001 19023 . + . FI_gene_label "RHPN2^ENSG00000131941.8" ; ID "RHPN2--RGS9^ENST00000254260.8" ; Parent "RHPN2--RGS9^RHPN2^ENSG00000131941.8" ; ccdsid "CCDS12427.1" ; exon_id "ENSE00003607533.1" ; exon_number 1 ; gene_id "RHPN2--RGS9^RHPN2^ENSG00000131941.8" ; gene_name RHPN2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000180340.4" ; havana_transcript "OTTHUMT00000450828.3" ; hgnc_id "HGNC:19974" ; level 2 ; orig_coord_info "chr19,33064784,33064852,-" ; protein_id "ENSP00000254260.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RHPN2--RGS9^ENST00000254260.8" ; transcript_name "RHPN2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RHPN2--RGS9 HAVANA gene 29514 50556 . + . FI_gene_label "RGS9^ENSG00000108370.17" ; ID "RHPN2--RGS9^RGS9^ENSG00000108370.17" ; ccdsid "CCDS42373.1" ; exon_id "ENSE00002712625.2" ; exon_number 1 ; gene_id "RHPN2--RGS9^RGS9^ENSG00000108370.17" ; gene_name RGS9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179349.3" ; havana_transcript "OTTHUMT00000445885.2" ; hgnc_id "HGNC:10004" ; level 2 ; orig_coord_info "chr17,65137541,65137597,+" ; protein_id "ENSP00000262406.9" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "RHPN2--RGS9^ENST00000262406.10" ; transcript_name "RGS9-201" ; transcript_support_level 1 ; transcript_type protein_coding
RHPN2--RGS9 HAVANA mRNA 29514 50556 . + . FI_gene_label "RGS9^ENSG00000108370.17" ; ID "RHPN2--RGS9^ENST00000262406.10" ; Parent "RHPN2--RGS9^RGS9^ENSG00000108370.17" ; ccdsid "CCDS42373.1" ; exon_id "ENSE00002712625.2" ; exon_number 1 ; gene_id "RHPN2--RGS9^RGS9^ENSG00000108370.17" ; gene_name RGS9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179349.3" ; havana_transcript "OTTHUMT00000445885.2" ; hgnc_id "HGNC:10004" ; level 2 ; orig_coord_info "chr17,65137541,65137597,+" ; protein_id "ENSP00000262406.9" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "RHPN2--RGS9^ENST00000262406.10" ; transcript_name "RGS9-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RNA5SP150--MIGA1 HAVANA gene 4120 26155 . + . FI_gene_label "MIGA1^ENSG00000180488.15" ; ID "RNA5SP150--MIGA1^MIGA1^ENSG00000180488.15" ; ccdsid "CCDS681.1" ; exon_id "ENSE00001453641.1" ; exon_number 1 ; gene_id "RNA5SP150--MIGA1^MIGA1^ENSG00000180488.15" ; gene_name MIGA1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000009766.6" ; havana_transcript "OTTHUMT00000026931.1" ; hgnc_id "HGNC:24741" ; level 2 ; orig_coord_info "chr1,77779656,77779736,+" ; protein_id "ENSP00000359827.3" ; tag basic appris_alternative_2 CCDS ; transcript_id "RNA5SP150--MIGA1^ENST00000370791.7" ; transcript_name "MIGA1-201" ; transcript_support_level 1 ; transcript_type protein_coding
RNA5SP150--MIGA1 HAVANA mRNA 4120 26155 . + . FI_gene_label "MIGA1^ENSG00000180488.15" ; ID "RNA5SP150--MIGA1^ENST00000370791.7" ; Parent "RNA5SP150--MIGA1^MIGA1^ENSG00000180488.15" ; ccdsid "CCDS681.1" ; exon_id "ENSE00001453641.1" ; exon_number 1 ; gene_id "RNA5SP150--MIGA1^MIGA1^ENSG00000180488.15" ; gene_name MIGA1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000009766.6" ; havana_transcript "OTTHUMT00000026931.1" ; hgnc_id "HGNC:24741" ; level 2 ; orig_coord_info "chr1,77779656,77779736,+" ; protein_id "ENSP00000359827.3" ; tag basic appris_alternative_2 CCDS ; transcript_id "RNA5SP150--MIGA1^ENST00000370791.7" ; transcript_name "MIGA1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
STX16--NPEPL1 HAVANA gene 1021 7754 . + . FI_gene_label "STX16^ENSG00000124222.22" ; ID "STX16--NPEPL1^STX16^ENSG00000124222.22" ; exon_id "ENSE00003459479.1" ; exon_number 3 ; gene_id "STX16--NPEPL1^STX16^ENSG00000124222.22" ; gene_name STX16 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033084.8" ; havana_transcript "OTTHUMT00000267911.2" ; hgnc_id "HGNC:11431" ; level 2 ; orig_coord_info "chr20,58667505,58667597,+" ; protein_id "ENSP00000312086.8" ; tag alternative_5_UTR mRNA_end_NF cds_end_NF ; transcript_id "STX16--NPEPL1^ENST00000312283.12" ; transcript_name "STX16-201" ; transcript_support_level 3 ; transcript_type protein_coding
STX16--NPEPL1 HAVANA mRNA 1021 7754 . + . FI_gene_label "STX16^ENSG00000124222.22" ; ID "STX16--NPEPL1^ENST00000312283.12" ; Parent "STX16--NPEPL1^STX16^ENSG00000124222.22" ; exon_id "ENSE00003459479.1" ; exon_number 3 ; gene_id "STX16--NPEPL1^STX16^ENSG00000124222.22" ; gene_name STX16 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033084.8" ; havana_transcript "OTTHUMT00000267911.2" ; hgnc_id "HGNC:11431" ; level 2 ; orig_coord_info "chr20,58667505,58667597,+" ; protein_id "ENSP00000312086.8" ; tag alternative_5_UTR mRNA_end_NF cds_end_NF ; transcript_id "STX16--NPEPL1^ENST00000312283.12" ; transcript_name "STX16-201" ; transcript_support_level 3 ; transcript_type protein_coding
L1 and L2 created:
STX16--NPEPL1 HAVANA gene 18353 29399 . + . FI_gene_label "NPEPL1^ENSG00000215440.12" ; ID "STX16--NPEPL1^NPEPL1^ENSG00000215440.12" ; ccdsid "CCDS46621.1" ; exon_id "ENSE00001408052.7" ; exon_number 1 ; gene_id "STX16--NPEPL1^NPEPL1^ENSG00000215440.12" ; gene_name NPEPL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033060.8" ; havana_transcript "OTTHUMT00000080402.7" ; hgnc_id "HGNC:16244" ; level 2 ; orig_coord_info "chr20,58692901,58693050,+" ; protein_id "ENSP00000348395.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "STX16--NPEPL1^ENST00000356091.11" ; transcript_name "NPEPL1-201" ; transcript_support_level 1 ; transcript_type protein_coding
STX16--NPEPL1 HAVANA mRNA 18353 29399 . + . FI_gene_label "NPEPL1^ENSG00000215440.12" ; ID "STX16--NPEPL1^ENST00000356091.11" ; Parent "STX16--NPEPL1^NPEPL1^ENSG00000215440.12" ; ccdsid "CCDS46621.1" ; exon_id "ENSE00001408052.7" ; exon_number 1 ; gene_id "STX16--NPEPL1^NPEPL1^ENSG00000215440.12" ; gene_name NPEPL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033060.8" ; havana_transcript "OTTHUMT00000080402.7" ; hgnc_id "HGNC:16244" ; level 2 ; orig_coord_info "chr20,58692901,58693050,+" ; protein_id "ENSP00000348395.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "STX16--NPEPL1^ENST00000356091.11" ; transcript_name "NPEPL1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TAF4--CDH4 HAVANA gene 1001 23695 . + . FI_gene_label "TAF4^ENSG00000130699.18" ; ID "TAF4--CDH4^TAF4^ENSG00000130699.18" ; ccdsid "CCDS33500.1" ; exon_id "ENSE00001379037.1" ; exon_number 1 ; gene_id "TAF4--CDH4^TAF4^ENSG00000130699.18" ; gene_name TAF4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032893.9" ; havana_transcript "OTTHUMT00000079968.2" ; hgnc_id "HGNC:11537" ; level 2 ; orig_coord_info "chr20,62064451,62065810,-" ; protein_id "ENSP00000252996.3" ; tag basic appris_principal_1 CCDS ; transcript_id "TAF4--CDH4^ENST00000252996.8" ; transcript_name "TAF4-201" ; transcript_support_level 1 ; transcript_type protein_coding
TAF4--CDH4 HAVANA mRNA 1001 23695 . + . FI_gene_label "TAF4^ENSG00000130699.18" ; ID "TAF4--CDH4^ENST00000252996.8" ; Parent "TAF4--CDH4^TAF4^ENSG00000130699.18" ; ccdsid "CCDS33500.1" ; exon_id "ENSE00001379037.1" ; exon_number 1 ; gene_id "TAF4--CDH4^TAF4^ENSG00000130699.18" ; gene_name TAF4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032893.9" ; havana_transcript "OTTHUMT00000079968.2" ; hgnc_id "HGNC:11537" ; level 2 ; orig_coord_info "chr20,62064451,62065810,-" ; protein_id "ENSP00000252996.3" ; tag basic appris_principal_1 CCDS ; transcript_id "TAF4--CDH4^ENST00000252996.8" ; transcript_name "TAF4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TAF4--CDH4 HAVANA gene 32087 48763 . + . FI_gene_label "CDH4^ENSG00000179242.16" ; ID "TAF4--CDH4^CDH4^ENSG00000179242.16" ; ccdsid "CCDS58784.1" ; exon_id "ENSE00003478283.1" ; exon_number 2 ; gene_id "TAF4--CDH4^CDH4^ENSG00000179242.16" ; gene_name CDH4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032890.5" ; havana_transcript "OTTHUMT00000476987.1" ; hgnc_id "HGNC:1763" ; level 2 ; orig_coord_info "chr20,61743616,61743789,+" ; protein_id "ENSP00000443301.1" ; tag basic CCDS ; transcript_id "TAF4--CDH4^ENST00000543233.2" ; transcript_name "CDH4-201" ; transcript_support_level 2 ; transcript_type protein_coding
TAF4--CDH4 HAVANA mRNA 32087 48763 . + . FI_gene_label "CDH4^ENSG00000179242.16" ; ID "TAF4--CDH4^ENST00000543233.2" ; Parent "TAF4--CDH4^CDH4^ENSG00000179242.16" ; ccdsid "CCDS58784.1" ; exon_id "ENSE00003478283.1" ; exon_number 2 ; gene_id "TAF4--CDH4^CDH4^ENSG00000179242.16" ; gene_name CDH4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032890.5" ; havana_transcript "OTTHUMT00000476987.1" ; hgnc_id "HGNC:1763" ; level 2 ; orig_coord_info "chr20,61743616,61743789,+" ; protein_id "ENSP00000443301.1" ; tag basic CCDS ; transcript_id "TAF4--CDH4^ENST00000543233.2" ; transcript_name "CDH4-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
TAX1BP1--AC007130.1 HAVANA gene 1765 21369 . + . FI_gene_label "TAX1BP1^ENSG00000106052.13" ; ID "TAX1BP1--AC007130.1^TAX1BP1^ENSG00000106052.13" ; ccdsid "CCDS43561.1" ; exon_id "ENSE00003692003.1" ; exon_number 2 ; gene_id "TAX1BP1--AC007130.1^TAX1BP1^ENSG00000106052.13" ; gene_name TAX1BP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000023377.9" ; havana_transcript "OTTHUMT00000214141.2" ; hgnc_id "HGNC:11575" ; level 2 ; orig_coord_info "chr7,27748525,27748686,+" ; protein_id "ENSP00000265393.6" ; tag basic appris_alternative_2 CCDS ; transcript_id "TAX1BP1--AC007130.1^ENST00000265393.10" ; transcript_name "TAX1BP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
TAX1BP1--AC007130.1 HAVANA mRNA 1765 21369 . + . FI_gene_label "TAX1BP1^ENSG00000106052.13" ; ID "TAX1BP1--AC007130.1^ENST00000265393.10" ; Parent "TAX1BP1--AC007130.1^TAX1BP1^ENSG00000106052.13" ; ccdsid "CCDS43561.1" ; exon_id "ENSE00003692003.1" ; exon_number 2 ; gene_id "TAX1BP1--AC007130.1^TAX1BP1^ENSG00000106052.13" ; gene_name TAX1BP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000023377.9" ; havana_transcript "OTTHUMT00000214141.2" ; hgnc_id "HGNC:11575" ; level 2 ; orig_coord_info "chr7,27748525,27748686,+" ; protein_id "ENSP00000265393.6" ; tag basic appris_alternative_2 CCDS ; transcript_id "TAX1BP1--AC007130.1^ENST00000265393.10" ; transcript_name "TAX1BP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TBK1--SRGAP1 HAVANA gene 1031 39962 . + . FI_gene_label "TBK1^ENSG00000183735.11" ; ID "TBK1--SRGAP1^TBK1^ENSG00000183735.11" ; ccdsid "CCDS8968.1" ; exon_id "ENSE00001328105.3" ; exon_number 2 ; gene_id "TBK1--SRGAP1^TBK1^ENSG00000183735.11" ; gene_name TBK1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168796.4" ; havana_transcript "OTTHUMT00000401130.3" ; hgnc_id "HGNC:11584" ; level 2 ; orig_coord_info "chr12,64455871,64455957,+" ; protein_id "ENSP00000329967.5" ; tag CAGE_supported_TSS basic MANE_Select appris_principal_2 CCDS ; transcript_id "TBK1--SRGAP1^ENST00000331710.10" ; transcript_name "TBK1-201" ; transcript_support_level 1 ; transcript_type protein_coding
TBK1--SRGAP1 HAVANA mRNA 1031 39962 . + . FI_gene_label "TBK1^ENSG00000183735.11" ; ID "TBK1--SRGAP1^ENST00000331710.10" ; Parent "TBK1--SRGAP1^TBK1^ENSG00000183735.11" ; ccdsid "CCDS8968.1" ; exon_id "ENSE00001328105.3" ; exon_number 2 ; gene_id "TBK1--SRGAP1^TBK1^ENSG00000183735.11" ; gene_name TBK1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168796.4" ; havana_transcript "OTTHUMT00000401130.3" ; hgnc_id "HGNC:11584" ; level 2 ; orig_coord_info "chr12,64455871,64455957,+" ; protein_id "ENSP00000329967.5" ; tag CAGE_supported_TSS basic MANE_Select appris_principal_2 CCDS ; transcript_id "TBK1--SRGAP1^ENST00000331710.10" ; transcript_name "TBK1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TBK1--SRGAP1 HAVANA gene 42963 88314 . + . FI_gene_label "SRGAP1^ENSG00000196935.9" ; ID "TBK1--SRGAP1^SRGAP1^ENSG00000196935.9" ; ccdsid "CCDS8967.1" ; exon_id "ENSE00002278180.2" ; exon_number 1 ; gene_id "TBK1--SRGAP1^SRGAP1^ENSG00000196935.9" ; gene_name SRGAP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168750.3" ; havana_transcript "OTTHUMT00000400896.3" ; hgnc_id "HGNC:17382" ; level 2 ; orig_coord_info "chr12,63844817,63844883,+" ; protein_id "ENSP00000347198.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TBK1--SRGAP1^ENST00000355086.8" ; transcript_name "SRGAP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
TBK1--SRGAP1 HAVANA mRNA 42963 88314 . + . FI_gene_label "SRGAP1^ENSG00000196935.9" ; ID "TBK1--SRGAP1^ENST00000355086.8" ; Parent "TBK1--SRGAP1^SRGAP1^ENSG00000196935.9" ; ccdsid "CCDS8967.1" ; exon_id "ENSE00002278180.2" ; exon_number 1 ; gene_id "TBK1--SRGAP1^SRGAP1^ENSG00000196935.9" ; gene_name SRGAP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168750.3" ; havana_transcript "OTTHUMT00000400896.3" ; hgnc_id "HGNC:17382" ; level 2 ; orig_coord_info "chr12,63844817,63844883,+" ; protein_id "ENSP00000347198.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TBK1--SRGAP1^ENST00000355086.8" ; transcript_name "SRGAP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TLK2--AC240565.1 HAVANA gene 4784 35054 . + . FI_gene_label "TLK2^ENSG00000146872.18" ; ID "TLK2--AC240565.1^TLK2^ENSG00000146872.18" ; ccdsid "CCDS62283.1" ; exon_id "ENSE00003568961.1" ; exon_number 2 ; gene_id "TLK2--AC240565.1^TLK2^ENSG00000146872.18" ; gene_name TLK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179176.3" ; havana_transcript "OTTHUMT00000445140.1" ; hgnc_id "HGNC:11842" ; level 2 ; orig_coord_info "chr17,62481126,62481206,+" ; protein_id "ENSP00000316512.9" ; tag basic CCDS ; transcript_id "TLK2--AC240565.1^ENST00000326270.13" ; transcript_name "TLK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
TLK2--AC240565.1 HAVANA mRNA 4784 35054 . + . FI_gene_label "TLK2^ENSG00000146872.18" ; ID "TLK2--AC240565.1^ENST00000326270.13" ; Parent "TLK2--AC240565.1^TLK2^ENSG00000146872.18" ; ccdsid "CCDS62283.1" ; exon_id "ENSE00003568961.1" ; exon_number 2 ; gene_id "TLK2--AC240565.1^TLK2^ENSG00000146872.18" ; gene_name TLK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179176.3" ; havana_transcript "OTTHUMT00000445140.1" ; hgnc_id "HGNC:11842" ; level 2 ; orig_coord_info "chr17,62481126,62481206,+" ; protein_id "ENSP00000316512.9" ; tag basic CCDS ; transcript_id "TLK2--AC240565.1^ENST00000326270.13" ; transcript_name "TLK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TLK2--BET1L HAVANA gene 40092 44550 . + . FI_gene_label "BET1L^ENSG00000177951.17" ; ID "TLK2--BET1L^BET1L^ENSG00000177951.17" ; ccdsid "CCDS7689.1" ; exon_id "ENSE00001955579.1" ; exon_number 1 ; gene_id "TLK2--BET1L^BET1L^ENSG00000177951.17" ; gene_name BET1L ; gene_type protein_coding ; havana_gene "OTTHUMG00000119071.4" ; havana_transcript "OTTHUMT00000239284.1" ; hgnc_id "HGNC:19348" ; level 2 ; orig_coord_info "chr11,207303,207321,-" ; protein_id "ENSP00000339093.7" ; tag basic CCDS ; transcript_id "TLK2--BET1L^ENST00000325147.13" ; transcript_name "BET1L-201" ; transcript_support_level 1 ; transcript_type protein_coding
TLK2--BET1L HAVANA mRNA 40092 44550 . + . FI_gene_label "BET1L^ENSG00000177951.17" ; ID "TLK2--BET1L^ENST00000325147.13" ; Parent "TLK2--BET1L^BET1L^ENSG00000177951.17" ; ccdsid "CCDS7689.1" ; exon_id "ENSE00001955579.1" ; exon_number 1 ; gene_id "TLK2--BET1L^BET1L^ENSG00000177951.17" ; gene_name BET1L ; gene_type protein_coding ; havana_gene "OTTHUMG00000119071.4" ; havana_transcript "OTTHUMT00000239284.1" ; hgnc_id "HGNC:19348" ; level 2 ; orig_coord_info "chr11,207303,207321,-" ; protein_id "ENSP00000339093.7" ; tag basic CCDS ; transcript_id "TLK2--BET1L^ENST00000325147.13" ; transcript_name "BET1L-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TLK2--BET1L HAVANA gene 4784 35054 . + . FI_gene_label "TLK2^ENSG00000146872.18" ; ID "TLK2--BET1L^TLK2^ENSG00000146872.18" ; ccdsid "CCDS62283.1" ; exon_id "ENSE00003568961.1" ; exon_number 2 ; gene_id "TLK2--BET1L^TLK2^ENSG00000146872.18" ; gene_name TLK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179176.3" ; havana_transcript "OTTHUMT00000445140.1" ; hgnc_id "HGNC:11842" ; level 2 ; orig_coord_info "chr17,62481126,62481206,+" ; protein_id "ENSP00000316512.9" ; tag basic CCDS ; transcript_id "TLK2--BET1L^ENST00000326270.13" ; transcript_name "TLK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
TLK2--BET1L HAVANA mRNA 4784 35054 . + . FI_gene_label "TLK2^ENSG00000146872.18" ; ID "TLK2--BET1L^ENST00000326270.13" ; Parent "TLK2--BET1L^TLK2^ENSG00000146872.18" ; ccdsid "CCDS62283.1" ; exon_id "ENSE00003568961.1" ; exon_number 2 ; gene_id "TLK2--BET1L^TLK2^ENSG00000146872.18" ; gene_name TLK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179176.3" ; havana_transcript "OTTHUMT00000445140.1" ; hgnc_id "HGNC:11842" ; level 2 ; orig_coord_info "chr17,62481126,62481206,+" ; protein_id "ENSP00000316512.9" ; tag basic CCDS ; transcript_id "TLK2--BET1L^ENST00000326270.13" ; transcript_name "TLK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TVP23C--CDRT4 HAVANA gene 1052 15760 . + . FI_gene_label "TVP23C^ENSG00000175106.17" ; ID "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; ccdsid "CCDS11170.1" ; exon_id "ENSE00001105678.2" ; exon_number 1 ; gene_id "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; gene_name TVP23C ; gene_type protein_coding ; havana_gene "OTTHUMG00000171461.10" ; havana_transcript "OTTHUMT00000130705.3" ; hgnc_id "HGNC:30453" ; level 2 ; orig_coord_info "chr17,15563437,15563448,-" ; protein_id "ENSP00000225576.3" ; tag basic CCDS ; transcript_id "TVP23C--CDRT4^ENST00000225576.7" ; transcript_name "TVP23C-201" ; transcript_support_level 1 ; transcript_type protein_coding
TVP23C--CDRT4 HAVANA mRNA 1052 15760 . + . FI_gene_label "TVP23C^ENSG00000175106.17" ; ID "TVP23C--CDRT4^ENST00000225576.7" ; Parent "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; ccdsid "CCDS11170.1" ; exon_id "ENSE00001105678.2" ; exon_number 1 ; gene_id "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; gene_name TVP23C ; gene_type protein_coding ; havana_gene "OTTHUMG00000171461.10" ; havana_transcript "OTTHUMT00000130705.3" ; hgnc_id "HGNC:30453" ; level 2 ; orig_coord_info "chr17,15563437,15563448,-" ; protein_id "ENSP00000225576.3" ; tag basic CCDS ; transcript_id "TVP23C--CDRT4^ENST00000225576.7" ; transcript_name "TVP23C-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TVP23C--CDRT4 HAVANA gene 19889 25887 . + . FI_gene_label "CDRT4^ENSG00000239704.11" ; ID "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; ccdsid "CCDS73995.1" ; exon_id "ENSE00003735347.1" ; exon_number 3 ; gene_id "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; gene_name CDRT4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059070.14" ; havana_transcript "OTTHUMT00000130383.9" ; hgnc_id "HGNC:14383" ; level 2 ; orig_coord_info "chr17,15440208,15440238,-" ; protein_id "ENSP00000482523.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TVP23C--CDRT4^ENST00000619038.5" ; transcript_name "CDRT4-204" ; transcript_support_level 1 ; transcript_type protein_coding
TVP23C--CDRT4 HAVANA mRNA 19889 25887 . + . FI_gene_label "CDRT4^ENSG00000239704.11" ; ID "TVP23C--CDRT4^ENST00000619038.5" ; Parent "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; ccdsid "CCDS73995.1" ; exon_id "ENSE00003735347.1" ; exon_number 3 ; gene_id "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; gene_name CDRT4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059070.14" ; havana_transcript "OTTHUMT00000130383.9" ; hgnc_id "HGNC:14383" ; level 2 ; orig_coord_info "chr17,15440208,15440238,-" ; protein_id "ENSP00000482523.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TVP23C--CDRT4^ENST00000619038.5" ; transcript_name "CDRT4-204" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ZDHHC17--PLD1 ENSEMBL gene 33366 37271 . + . FI_gene_label "PLD1^ENSG00000075651.16" ; ID "ZDHHC17--PLD1^PLD1^ENSG00000075651.16" ; exon_id "ENSE00001313307.4" ; exon_number 2 ; gene_id "ZDHHC17--PLD1^PLD1^ENSG00000075651.16" ; gene_name PLD1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000156947.8" ; hgnc_id "HGNC:9067" ; level 3 ; orig_coord_info "chr3,171792353,171792808,-" ; protein_id "ENSP00000328422.2" ; tag basic ; transcript_id "ZDHHC17--PLD1^ENST00000331659.2" ; transcript_name "PLD1-201" ; transcript_support_level 1 ; transcript_type protein_coding
ZDHHC17--PLD1 ENSEMBL mRNA 33366 37271 . + . FI_gene_label "PLD1^ENSG00000075651.16" ; ID "ZDHHC17--PLD1^ENST00000331659.2" ; Parent "ZDHHC17--PLD1^PLD1^ENSG00000075651.16" ; exon_id "ENSE00001313307.4" ; exon_number 2 ; gene_id "ZDHHC17--PLD1^PLD1^ENSG00000075651.16" ; gene_name PLD1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000156947.8" ; hgnc_id "HGNC:9067" ; level 3 ; orig_coord_info "chr3,171792353,171792808,-" ; protein_id "ENSP00000328422.2" ; tag basic ; transcript_id "ZDHHC17--PLD1^ENST00000331659.2" ; transcript_name "PLD1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ZDHHC17--PLD1 HAVANA gene 1013 29339 . + . FI_gene_label "ZDHHC17^ENSG00000186908.15" ; ID "ZDHHC17--PLD1^ZDHHC17^ENSG00000186908.15" ; ccdsid "CCDS44946.1" ; exon_id "ENSE00003648392.2" ; exon_number 1 ; gene_id "ZDHHC17--PLD1^ZDHHC17^ENSG00000186908.15" ; gene_name ZDHHC17 ; gene_type protein_coding ; havana_gene "OTTHUMG00000169917.2" ; havana_transcript "OTTHUMT00000406555.1" ; hgnc_id "HGNC:18412" ; level 2 ; orig_coord_info "chr12,76764237,76764329,+" ; protein_id "ENSP00000403397.2" ; tag non_canonical_U12 basic MANE_Select appris_principal_1 CCDS ; transcript_id "ZDHHC17--PLD1^ENST00000426126.7" ; transcript_name "ZDHHC17-201" ; transcript_support_level 1 ; transcript_type protein_coding
ZDHHC17--PLD1 HAVANA mRNA 1013 29339 . + . FI_gene_label "ZDHHC17^ENSG00000186908.15" ; ID "ZDHHC17--PLD1^ENST00000426126.7" ; Parent "ZDHHC17--PLD1^ZDHHC17^ENSG00000186908.15" ; ccdsid "CCDS44946.1" ; exon_id "ENSE00003648392.2" ; exon_number 1 ; gene_id "ZDHHC17--PLD1^ZDHHC17^ENSG00000186908.15" ; gene_name ZDHHC17 ; gene_type protein_coding ; havana_gene "OTTHUMG00000169917.2" ; havana_transcript "OTTHUMT00000406555.1" ; hgnc_id "HGNC:18412" ; level 2 ; orig_coord_info "chr12,76764237,76764329,+" ; protein_id "ENSP00000403397.2" ; tag non_canonical_U12 basic MANE_Select appris_principal_1 CCDS ; transcript_id "ZDHHC17--PLD1^ENST00000426126.7" ; transcript_name "ZDHHC17-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ZNF236--ALG1L2 HAVANA gene 2107 41277 . + . FI_gene_label "ZNF236^ENSG00000130856.17" ; ID "ZNF236--ALG1L2^ZNF236^ENSG00000130856.17" ; ccdsid "CCDS42447.1" ; exon_id "ENSE00001349209.1" ; exon_number 1 ; gene_id "ZNF236--ALG1L2^ZNF236^ENSG00000130856.17" ; gene_name ZNF236 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179331.3" ; havana_transcript "OTTHUMT00000445776.1" ; hgnc_id "HGNC:13028" ; level 2 ; orig_coord_info "chr18,76824358,76824406,+" ; protein_id "ENSP00000253159.8" ; tag basic appris_alternative_2 CCDS ; transcript_id "ZNF236--ALG1L2^ENST00000253159.12" ; transcript_name "ZNF236-201" ; transcript_support_level 1 ; transcript_type protein_coding
ZNF236--ALG1L2 HAVANA mRNA 2107 41277 . + . FI_gene_label "ZNF236^ENSG00000130856.17" ; ID "ZNF236--ALG1L2^ENST00000253159.12" ; Parent "ZNF236--ALG1L2^ZNF236^ENSG00000130856.17" ; ccdsid "CCDS42447.1" ; exon_id "ENSE00001349209.1" ; exon_number 1 ; gene_id "ZNF236--ALG1L2^ZNF236^ENSG00000130856.17" ; gene_name ZNF236 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179331.3" ; havana_transcript "OTTHUMT00000445776.1" ; hgnc_id "HGNC:13028" ; level 2 ; orig_coord_info "chr18,76824358,76824406,+" ; protein_id "ENSP00000253159.8" ; tag basic appris_alternative_2 CCDS ; transcript_id "ZNF236--ALG1L2^ENST00000253159.12" ; transcript_name "ZNF236-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ZNF236--ALG1L2 HAVANA gene 46452 54263 . + . FI_gene_label "ALG1L2^ENSG00000251287.8" ; ID "ZNF236--ALG1L2^ALG1L2^ENSG00000251287.8" ; exon_id "ENSE00003694531.1" ; exon_number 1 ; gene_id "ZNF236--ALG1L2^ALG1L2^ENSG00000251287.8" ; gene_name ALG1L2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000159782.3" ; havana_transcript "OTTHUMT00000357944.2" ; hgnc_id "HGNC:37258" ; level 2 ; orig_coord_info "chr3,130082017,130082036,+" ; protein_id "ENSP00000479850.1" ; tag basic MANE_Select appris_principal_1 ; transcript_id "ZNF236--ALG1L2^ENST00000425059.1" ; transcript_name "ALG1L2-201" ; transcript_support_level 5 ; transcript_type protein_coding
ZNF236--ALG1L2 HAVANA mRNA 46452 54263 . + . FI_gene_label "ALG1L2^ENSG00000251287.8" ; ID "ZNF236--ALG1L2^ENST00000425059.1" ; Parent "ZNF236--ALG1L2^ALG1L2^ENSG00000251287.8" ; exon_id "ENSE00003694531.1" ; exon_number 1 ; gene_id "ZNF236--ALG1L2^ALG1L2^ENSG00000251287.8" ; gene_name ALG1L2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000159782.3" ; havana_transcript "OTTHUMT00000357944.2" ; hgnc_id "HGNC:37258" ; level 2 ; orig_coord_info "chr3,130082017,130082036,+" ; protein_id "ENSP00000479850.1" ; tag basic MANE_Select appris_principal_1 ; transcript_id "ZNF236--ALG1L2^ENST00000425059.1" ; transcript_name "ALG1L2-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
AC091132.4--AC091132.1 HAVANA gene 3561 4511 . + . FI_gene_label "AC091132.4^ENSG00000267198.1" ; ID "AC091132.4--AC091132.1^AC091132.4^ENSG00000267198.1" ; exon_id "ENSE00002974385.1" ; exon_number 1 ; gene_id "AC091132.4--AC091132.1^AC091132.4^ENSG00000267198.1" ; gene_name "AC091132.4" ; gene_type lncRNA ; havana_gene "OTTHUMG00000180602.1" ; havana_transcript "OTTHUMT00000452149.1" ; level 2 ; orig_coord_info "chr17,45552855,45553267,+" ; tag basic ; transcript_id "AC091132.4--AC091132.1^ENST00000585761.1" ; transcript_name "AC091132.4-205" ; transcript_support_level 4 ; transcript_type lncRNA
AC091132.4--AC091132.1 HAVANA RNA 3561 4511 . + . FI_gene_label "AC091132.4^ENSG00000267198.1" ; ID "AC091132.4--AC091132.1^ENST00000585761.1" ; Parent "AC091132.4--AC091132.1^AC091132.4^ENSG00000267198.1" ; exon_id "ENSE00002974385.1" ; exon_number 1 ; gene_id "AC091132.4--AC091132.1^AC091132.4^ENSG00000267198.1" ; gene_name "AC091132.4" ; gene_type lncRNA ; havana_gene "OTTHUMG00000180602.1" ; havana_transcript "OTTHUMT00000452149.1" ; level 2 ; orig_coord_info "chr17,45552855,45553267,+" ; tag basic ; transcript_id "AC091132.4--AC091132.1^ENST00000585761.1" ; transcript_name "AC091132.4-205" ; transcript_support_level 4 ; transcript_type lncRNA
L1 and L2 created:
AC091132.4--AC091132.1 HAVANA gene 11023 11770 . + . FI_gene_label "AC091132.1^ENSG00000131484.4" ; ID "AC091132.4--AC091132.1^AC091132.1^ENSG00000131484.4" ; exon_id "ENSE00002831453.1" ; exon_number 1 ; gene_id "AC091132.4--AC091132.1^AC091132.1^ENSG00000131484.4" ; gene_name "AC091132.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000180601.1" ; havana_transcript "OTTHUMT00000452144.1" ; level 2 ; orig_coord_info "chr17,45533963,45534303,+" ; tag basic ; transcript_id "AC091132.4--AC091132.1^ENST00000588189.1" ; transcript_name "AC091132.1-201" ; transcript_support_level 5 ; transcript_type lncRNA
AC091132.4--AC091132.1 HAVANA RNA 11023 11770 . + . FI_gene_label "AC091132.1^ENSG00000131484.4" ; ID "AC091132.4--AC091132.1^ENST00000588189.1" ; Parent "AC091132.4--AC091132.1^AC091132.1^ENSG00000131484.4" ; exon_id "ENSE00002831453.1" ; exon_number 1 ; gene_id "AC091132.4--AC091132.1^AC091132.1^ENSG00000131484.4" ; gene_name "AC091132.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000180601.1" ; havana_transcript "OTTHUMT00000452144.1" ; level 2 ; orig_coord_info "chr17,45533963,45534303,+" ; tag basic ; transcript_id "AC091132.4--AC091132.1^ENST00000588189.1" ; transcript_name "AC091132.1-201" ; transcript_support_level 5 ; transcript_type lncRNA
L1 and L2 created:
ESR1--UBR5-AS1 HAVANA gene 36702 39749 . + . FI_gene_label "UBR5-AS1^ENSG00000246263.3" ; ID "ESR1--UBR5-AS1^UBR5-AS1^ENSG00000246263.3" ; exon_id "ENSE00001962645.1" ; exon_number 1 ; gene_id "ESR1--UBR5-AS1^UBR5-AS1^ENSG00000246263.3" ; gene_name "UBR5-AS1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000164878.2" ; havana_transcript "OTTHUMT00000380743.1" ; hgnc_id "HGNC:51661" ; level 2 ; orig_coord_info "chr8,102243609,102244121,+" ; transcript_id "ESR1--UBR5-AS1^ENST00000499653.1" ; transcript_name "UBR5-AS1-201" ; transcript_support_level 2 ; transcript_type lncRNA
ESR1--UBR5-AS1 HAVANA RNA 36702 39749 . + . FI_gene_label "UBR5-AS1^ENSG00000246263.3" ; ID "ESR1--UBR5-AS1^ENST00000499653.1" ; Parent "ESR1--UBR5-AS1^UBR5-AS1^ENSG00000246263.3" ; exon_id "ENSE00001962645.1" ; exon_number 1 ; gene_id "ESR1--UBR5-AS1^UBR5-AS1^ENSG00000246263.3" ; gene_name "UBR5-AS1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000164878.2" ; havana_transcript "OTTHUMT00000380743.1" ; hgnc_id "HGNC:51661" ; level 2 ; orig_coord_info "chr8,102243609,102244121,+" ; transcript_id "ESR1--UBR5-AS1^ENST00000499653.1" ; transcript_name "UBR5-AS1-201" ; transcript_support_level 2 ; transcript_type lncRNA
L1 and L2 created:
FSIP1--AC013652.1 HAVANA gene 21835 37275 . + . FI_gene_label "AC013652.1^ENSG00000259345.7" ; ID "FSIP1--AC013652.1^AC013652.1^ENSG00000259345.7" ; exon_id "ENSE00002558629.1" ; exon_number 1 ; gene_id "FSIP1--AC013652.1^AC013652.1^ENSG00000259345.7" ; gene_name "AC013652.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000172466.4" ; havana_transcript "OTTHUMT00000418683.1" ; level 2 ; orig_coord_info "chr15,39427098,39427195,-" ; tag basic ; transcript_id "FSIP1--AC013652.1^ENST00000558209.1" ; transcript_name "AC013652.1-205" ; transcript_support_level 3 ; transcript_type lncRNA
FSIP1--AC013652.1 HAVANA RNA 21835 37275 . + . FI_gene_label "AC013652.1^ENSG00000259345.7" ; ID "FSIP1--AC013652.1^ENST00000558209.1" ; Parent "FSIP1--AC013652.1^AC013652.1^ENSG00000259345.7" ; exon_id "ENSE00002558629.1" ; exon_number 1 ; gene_id "FSIP1--AC013652.1^AC013652.1^ENSG00000259345.7" ; gene_name "AC013652.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000172466.4" ; havana_transcript "OTTHUMT00000418683.1" ; level 2 ; orig_coord_info "chr15,39427098,39427195,-" ; tag basic ; transcript_id "FSIP1--AC013652.1^ENST00000558209.1" ; transcript_name "AC013652.1-205" ; transcript_support_level 3 ; transcript_type lncRNA
L1 and L2 created:
GLI3--AC034187.1 HAVANA gene 40358 41918 . + . FI_gene_label "AC034187.1^ENSG00000224884.1" ; ID "GLI3--AC034187.1^AC034187.1^ENSG00000224884.1" ; exon_id "ENSE00001527608.3" ; exon_number 1 ; gene_id "GLI3--AC034187.1^AC034187.1^ENSG00000224884.1" ; gene_name "AC034187.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000154969.1" ; havana_transcript "OTTHUMT00000337852.1" ; level 2 ; orig_coord_info "chr3,8592713,8593124,-" ; tag basic ; transcript_id "GLI3--AC034187.1^ENST00000437047.1" ; transcript_name "AC034187.1-201" ; transcript_support_level 4 ; transcript_type lncRNA
GLI3--AC034187.1 HAVANA RNA 40358 41918 . + . FI_gene_label "AC034187.1^ENSG00000224884.1" ; ID "GLI3--AC034187.1^ENST00000437047.1" ; Parent "GLI3--AC034187.1^AC034187.1^ENSG00000224884.1" ; exon_id "ENSE00001527608.3" ; exon_number 1 ; gene_id "GLI3--AC034187.1^AC034187.1^ENSG00000224884.1" ; gene_name "AC034187.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000154969.1" ; havana_transcript "OTTHUMT00000337852.1" ; level 2 ; orig_coord_info "chr3,8592713,8593124,-" ; tag basic ; transcript_id "GLI3--AC034187.1^ENST00000437047.1" ; transcript_name "AC034187.1-201" ; transcript_support_level 4 ; transcript_type lncRNA
L1 and L2 created:
MIR4713HG--GLDN HAVANA gene 1001 3561 . + . FI_gene_label "MIR4713HG^ENSG00000259240.1" ; ID "MIR4713HG--GLDN^MIR4713HG^ENSG00000259240.1" ; exon_id "ENSE00002575468.1" ; exon_number 1 ; gene_id "MIR4713HG--GLDN^MIR4713HG^ENSG00000259240.1" ; gene_name MIR4713HG ; gene_type lncRNA ; havana_gene "OTTHUMG00000172467.1" ; havana_transcript "OTTHUMT00000418684.1" ; hgnc_id "HGNC:53124" ; level 2 ; orig_coord_info "chr15,51037488,51037681,+" ; tag basic ; transcript_id "MIR4713HG--GLDN^ENST00000559909.1" ; transcript_name "MIR4713HG-201" ; transcript_support_level 4 ; transcript_type lncRNA
MIR4713HG--GLDN HAVANA RNA 1001 3561 . + . FI_gene_label "MIR4713HG^ENSG00000259240.1" ; ID "MIR4713HG--GLDN^ENST00000559909.1" ; Parent "MIR4713HG--GLDN^MIR4713HG^ENSG00000259240.1" ; exon_id "ENSE00002575468.1" ; exon_number 1 ; gene_id "MIR4713HG--GLDN^MIR4713HG^ENSG00000259240.1" ; gene_name MIR4713HG ; gene_type lncRNA ; havana_gene "OTTHUMG00000172467.1" ; havana_transcript "OTTHUMT00000418684.1" ; hgnc_id "HGNC:53124" ; level 2 ; orig_coord_info "chr15,51037488,51037681,+" ; tag basic ; transcript_id "MIR4713HG--GLDN^ENST00000559909.1" ; transcript_name "MIR4713HG-201" ; transcript_support_level 4 ; transcript_type lncRNA
L1 and L2 created:
NFE2L2--CYCTP HAVANA gene 21005 22635 . + . FI_gene_label "CYCTP^ENSG00000249909.1" ; ID "NFE2L2--CYCTP^CYCTP^ENSG00000249909.1" ; exon_id "ENSE00002053327.1" ; exon_number 1 ; gene_id "NFE2L2--CYCTP^CYCTP^ENSG00000249909.1" ; gene_name CYCTP ; gene_type unitary_pseudogene ; havana_gene "OTTHUMG00000154943.1" ; havana_transcript "OTTHUMT00000337764.1" ; hgnc_id "HGNC:24424" ; level 2 ; ont "PGO:0000006" ; orig_coord_info "chr2,178104302,178104470,-" ; tag basic ; transcript_id "NFE2L2--CYCTP^ENST00000504253.1" ; transcript_name "CYCTP-201" ; transcript_support_level NA ; transcript_type unitary_pseudogene
NFE2L2--CYCTP HAVANA RNA 21005 22635 . + . FI_gene_label "CYCTP^ENSG00000249909.1" ; ID "NFE2L2--CYCTP^ENST00000504253.1" ; Parent "NFE2L2--CYCTP^CYCTP^ENSG00000249909.1" ; exon_id "ENSE00002053327.1" ; exon_number 1 ; gene_id "NFE2L2--CYCTP^CYCTP^ENSG00000249909.1" ; gene_name CYCTP ; gene_type unitary_pseudogene ; havana_gene "OTTHUMG00000154943.1" ; havana_transcript "OTTHUMT00000337764.1" ; hgnc_id "HGNC:24424" ; level 2 ; ont "PGO:0000006" ; orig_coord_info "chr2,178104302,178104470,-" ; tag basic ; transcript_id "NFE2L2--CYCTP^ENST00000504253.1" ; transcript_name "CYCTP-201" ; transcript_support_level NA ; transcript_type unitary_pseudogene
L1 and L2 created:
RNA5SP150--MIGA1 ENSEMBL gene 1001 1119 . + . FI_gene_label "RNA5SP150^ENSG00000199839.1" ; ID "RNA5SP150--MIGA1^RNA5SP150^ENSG00000199839.1" ; exon_id "ENSE00001808926.1" ; exon_number 1 ; gene_id "RNA5SP150--MIGA1^RNA5SP150^ENSG00000199839.1" ; gene_name RNA5SP150 ; gene_type rRNA ; hgnc_id "HGNC:43050" ; level 3 ; orig_coord_info "chr3,181822872,181822990,-" ; tag basic ; transcript_id "RNA5SP150--MIGA1^ENST00000362969.1" ; transcript_name "RNA5SP150-201" ; transcript_support_level NA ; transcript_type rRNA
RNA5SP150--MIGA1 ENSEMBL RNA 1001 1119 . + . FI_gene_label "RNA5SP150^ENSG00000199839.1" ; ID "RNA5SP150--MIGA1^ENST00000362969.1" ; Parent "RNA5SP150--MIGA1^RNA5SP150^ENSG00000199839.1" ; exon_id "ENSE00001808926.1" ; exon_number 1 ; gene_id "RNA5SP150--MIGA1^RNA5SP150^ENSG00000199839.1" ; gene_name RNA5SP150 ; gene_type rRNA ; hgnc_id "HGNC:43050" ; level 3 ; orig_coord_info "chr3,181822872,181822990,-" ; tag basic ; transcript_id "RNA5SP150--MIGA1^ENST00000362969.1" ; transcript_name "RNA5SP150-201" ; transcript_support_level NA ; transcript_type rRNA
L1 and L2 created:
TAX1BP1--AC007130.1 HAVANA gene 31541 33029 . + . FI_gene_label "AC007130.1^ENSG00000286478.1" ; ID "TAX1BP1--AC007130.1^AC007130.1^ENSG00000286478.1" ; exon_id "ENSE00003868055.1" ; exon_number 1 ; gene_id "TAX1BP1--AC007130.1^AC007130.1^ENSG00000286478.1" ; gene_name "AC007130.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000194064.1" ; havana_transcript "OTTHUMT00000509891.1" ; level 2 ; orig_coord_info "chr7,27617474,27617688,+" ; tag basic TAGENE ; transcript_id "TAX1BP1--AC007130.1^ENST00000665298.1" ; transcript_name "AC007130.1-201" ; transcript_type lncRNA
TAX1BP1--AC007130.1 HAVANA RNA 31541 33029 . + . FI_gene_label "AC007130.1^ENSG00000286478.1" ; ID "TAX1BP1--AC007130.1^ENST00000665298.1" ; Parent "TAX1BP1--AC007130.1^AC007130.1^ENSG00000286478.1" ; exon_id "ENSE00003868055.1" ; exon_number 1 ; gene_id "TAX1BP1--AC007130.1^AC007130.1^ENSG00000286478.1" ; gene_name "AC007130.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000194064.1" ; havana_transcript "OTTHUMT00000509891.1" ; level 2 ; orig_coord_info "chr7,27617474,27617688,+" ; tag basic TAGENE ; transcript_id "TAX1BP1--AC007130.1^ENST00000665298.1" ; transcript_name "AC007130.1-201" ; transcript_type lncRNA
L1 and L2 created:
TLK2--AC240565.1 HAVANA gene 40046 48301 . + . FI_gene_label "AC240565.1^ENSG00000280136.2" ; ID "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2" ; exon_id "ENSE00003756821.1" ; exon_number 1 ; gene_id "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2" ; gene_name "AC240565.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000189256.2" ; havana_transcript "OTTHUMT00000479189.2" ; level 2 ; orig_coord_info "chr17,118383,118578,-" ; tag not_best_in_genome_evidence basic ; transcript_id "TLK2--AC240565.1^ENST00000624936.2" ; transcript_name "AC240565.1-201" ; transcript_support_level 5 ; transcript_type lncRNA
TLK2--AC240565.1 HAVANA RNA 40046 48301 . + . FI_gene_label "AC240565.1^ENSG00000280136.2" ; ID "TLK2--AC240565.1^ENST00000624936.2" ; Parent "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2" ; exon_id "ENSE00003756821.1" ; exon_number 1 ; gene_id "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2" ; gene_name "AC240565.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000189256.2" ; havana_transcript "OTTHUMT00000479189.2" ; level 2 ; orig_coord_info "chr17,118383,118578,-" ; tag not_best_in_genome_evidence basic ; transcript_id "TLK2--AC240565.1^ENST00000624936.2" ; transcript_name "AC240565.1-201" ; transcript_support_level 5 ; transcript_type lncRNA
L1 and L2 created:
TLK2P1--AC110079.1 HAVANA gene 1001 4192 . + . FI_gene_label "TLK2P1^ENSG00000226049.3" ; ID "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; exon_id "ENSE00002174619.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; gene_name TLK2P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000166422.1" ; havana_transcript "OTTHUMT00000389700.1" ; hgnc_id "HGNC:18048" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr17,34036681,34039872,-" ; tag pseudo_consens basic ; transcript_id "TLK2P1--AC110079.1^ENST00000530992.1" ; transcript_name "TLK2P1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
TLK2P1--AC110079.1 HAVANA RNA 1001 4192 . + . FI_gene_label "TLK2P1^ENSG00000226049.3" ; ID "TLK2P1--AC110079.1^ENST00000530992.1" ; Parent "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; exon_id "ENSE00002174619.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; gene_name TLK2P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000166422.1" ; havana_transcript "OTTHUMT00000389700.1" ; hgnc_id "HGNC:18048" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr17,34036681,34039872,-" ; tag pseudo_consens basic ; transcript_id "TLK2P1--AC110079.1^ENST00000530992.1" ; transcript_name "TLK2P1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
TLK2P1--AC110079.1 HAVANA gene 7193 19707 . + . FI_gene_label "AC110079.1^ENSG00000260404.3" ; ID "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; exon_id "ENSE00002625896.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; gene_name "AC110079.1" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000161164.4" ; havana_transcript "OTTHUMT00000364170.2" ; level 2 ; orig_coord_info "chr4,118591773,118591895,+" ; tag dotter_confirmed basic ; transcript_id "TLK2P1--AC110079.1^ENST00000567913.2" ; transcript_name "AC110079.1-201" ; transcript_support_level 5 ; transcript_type processed_transcript
TLK2P1--AC110079.1 HAVANA RNA 7193 19707 . + . FI_gene_label "AC110079.1^ENSG00000260404.3" ; ID "TLK2P1--AC110079.1^ENST00000567913.2" ; Parent "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; exon_id "ENSE00002625896.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; gene_name "AC110079.1" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000161164.4" ; havana_transcript "OTTHUMT00000364170.2" ; level 2 ; orig_coord_info "chr4,118591773,118591895,+" ; tag dotter_confirmed basic ; transcript_id "TLK2P1--AC110079.1^ENST00000567913.2" ; transcript_name "AC110079.1-201" ; transcript_support_level 5 ; transcript_type processed_transcript
974 cases fixed where L3 features have parent feature(s) missing
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check5: l1 linked to l2 ----------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check6: remove orphan l1 ---------------------------
We remove only those not supposed to be orphan
None found
------------------------------ done in 0 seconds -------------------------------
------------------------- Check7: all level3 locations -------------------------
------------------------------ done in 0 seconds -------------------------------
------------------------------ Check8: check cds -------------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
----------------------------- Check9: check exons ------------------------------
No exons created
No exons locations modified
No supernumerary exons removed
No level2 locations modified
------------------------------ done in 0 seconds -------------------------------
----------------------------- Check10: check utrs ------------------------------
1849 UTRs created that were missing
No UTRs locations modified
No supernumerary UTRs removed
------------------------------ done in 0 seconds -------------------------------
------------------------ Check11: all level2 locations -------------------------
No problem found
------------------------------ done in 1 seconds -------------------------------
------------------------ Check12: all level1 locations -------------------------
We fixed 76 wrong level1 location cases
------------------------------ done in 0 seconds -------------------------------
---------------------- Check13: remove identical isoforms ----------------------
None found
------------------------------ done in 0 seconds -------------------------------
------ End checks (done in 1 second) ------
GFF3 file parsed