Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c5/f6f773918406d6eb71e7a255bf3313/tih_rna_sample_00591_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0b/aa87346b13cd7f3613121a369cc5b6/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0b/aa87346b13cd7f3613121a369cc5b6/.command.run
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa.fai
==> STAGING COMPLETE (5 inputs)
Using GATK jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar
Running:
java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -Xmx60620M -XX:-UsePerfData -XX:ParallelGCThreads=2 -jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar MarkDuplicates --INPUT tih_rna_sample_00591_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam --OUTPUT tih_rna_sample_00591_B23MVV7LT4_1.md.bam --METRICS_FILE tih_rna_sample_00591_B23MVV7LT4_1.md.bam.metrics --TMP_DIR . --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa -REMOVE_DUPLICATES false -VALIDATION_STRINGENCY LENIENT
08:41:35.551 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar!/com/intel/gkl/native/libgkl_compression.so
[Mon Jun 08 08:41:35 GMT 2026] MarkDuplicates --INPUT tih_rna_sample_00591_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam --OUTPUT tih_rna_sample_00591_B23MVV7LT4_1.md.bam --METRICS_FILE tih_rna_sample_00591_B23MVV7LT4_1.md.bam.metrics --REMOVE_DUPLICATES false --TMP_DIR . --VALIDATION_STRINGENCY LENIENT --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --FLOW_MODE false --FLOW_QUALITY_SUM_STRATEGY false --USE_END_IN_UNPAIRED_READS false --USE_UNPAIRED_CLIPPED_END false --UNPAIRED_END_UNCERTAINTY 0 --FLOW_SKIP_FIRST_N_FLOWS 0 --FLOW_Q_IS_KNOWN_END false --FLOW_EFFECTIVE_QUALITY_THRESHOLD 15 --ADD_PG_TAG_TO_READS true --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX <optimized capture of last three ':' separated fields as numeric values> --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --VERBOSITY INFO --QUIET false --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Mon Jun 08 08:41:35 GMT 2026] Executing as ?@nf-0baa87346b13cd7f3613121a369cc5b6-4c0a9-lmt4r on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 17.0.3-internal+0-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:4.4.0.0
INFO 2026-06-08 08:41:35 MarkDuplicates Start of doWork freeMemory: 105827976; totalMemory: 134217728; maxMemory: 63585648640
INFO 2026-06-08 08:41:35 MarkDuplicates Reading input file and constructing read end information.
INFO 2026-06-08 08:41:35 MarkDuplicates Will retain up to 230382784 data points before spilling to disk.
INFO 2026-06-08 08:41:39 MarkDuplicates Read 1,000,000 records. Elapsed time: 00:00:02s. Time for last 1,000,000: 2s. Last read position: chr1:1,205,372
INFO 2026-06-08 08:41:39 MarkDuplicates Tracking 2265 as yet unmatched pairs. 80 records in RAM.
INFO 2026-06-08 08:41:42 MarkDuplicates Read 2,000,000 records. Elapsed time: 00:00:05s. Time for last 1,000,000: 2s. Last read position: chr1:1,645,810
INFO 2026-06-08 08:41:42 MarkDuplicates Tracking 5006 as yet unmatched pairs. 223 records in RAM.
INFO 2026-06-08 08:41:44 MarkDuplicates Read 3,000,000 records. Elapsed time: 00:00:07s. Time for last 1,000,000: 1s. Last read position: chr1:6,186,748
INFO 2026-06-08 08:41:44 MarkDuplicates Tracking 8373 as yet unmatched pairs. 1149 records in RAM.
INFO 2026-06-08 08:41:46 MarkDuplicates Read 4,000,000 records. Elapsed time: 00:00:09s. Time for last 1,000,000: 2s. Last read position: chr1:8,861,380
INFO 2026-06-08 08:41:46 MarkDuplicates Tracking 12956 as yet unmatched pairs. 3339 records in RAM.
INFO 2026-06-08 08:41:48 MarkDuplicates Read 5,000,000 records. Elapsed time: 00:00:11s. Time for last 1,000,000: 1s. Last read position: chr1:10,375,331
INFO 2026-06-08 08:41:48 MarkDuplicates Tracking 12109 as yet unmatched pairs. 208 records in RAM.
INFO 2026-06-08 08:41:50 MarkDuplicates Read 6,000,000 records. Elapsed time: 00:00:13s. Time for last 1,000,000: 2s. Last read position: chr1:11,956,995
INFO 2026-06-08 08:41:50 MarkDuplicates Tracking 15263 as yet unmatched pairs. 878 records in RAM.
INFO 2026-06-08 08:41:52 MarkDuplicates Read 7,000,000 records. Elapsed time: 00:00:15s. Time for last 1,000,000: 1s. Last read position: chr1:15,931,512
INFO 2026-06-08 08:41:52 MarkDuplicates Tracking 16868 as yet unmatched pairs. 100 records in RAM.
INFO 2026-06-08 08:41:55 MarkDuplicates Read 8,000,000 records. Elapsed time: 00:00:17s. Time for last 1,000,000: 2s. Last read position: chr1:16,990,207
INFO 2026-06-08 08:41:55 MarkDuplicates Tracking 19147 as yet unmatched pairs. 128 records in RAM.
INFO 2026-06-08 08:41:57 MarkDuplicates Read 9,000,000 records. Elapsed time: 00:00:19s. Time for last 1,000,000: 2s. Last read position: chr1:19,345,232
INFO 2026-06-08 08:41:57 MarkDuplicates Tracking 22159 as yet unmatched pairs. 813 records in RAM.
INFO 2026-06-08 08:41:59 MarkDuplicates Read 10,000,000 records. Elapsed time: 00:00:21s. Time for last 1,000,000: 1s. Last read position: chr1:21,828,079
INFO 2026-06-08 08:41:59 MarkDuplicates Tracking 24340 as yet unmatched pairs. 693 records in RAM.
INFO 2026-06-08 08:42:01 MarkDuplicates Read 11,000,000 records. Elapsed time: 00:00:24s. Time for last 1,000,000: 2s. Last read position: chr1:21,860,177
INFO 2026-06-08 08:42:01 MarkDuplicates Tracking 26630 as yet unmatched pairs. 630 records in RAM.
INFO 2026-06-08 08:42:04 MarkDuplicates Read 12,000,000 records. Elapsed time: 00:00:26s. Time for last 1,000,000: 2s. Last read position: chr1:22,639,035
INFO 2026-06-08 08:42:04 MarkDuplicates Tracking 29052 as yet unmatched pairs. 580 records in RAM.
INFO 2026-06-08 08:42:06 MarkDuplicates Read 13,000,000 records. Elapsed time: 00:00:28s. Time for last 1,000,000: 2s. Last read position: chr1:23,793,007
INFO 2026-06-08 08:42:06 MarkDuplicates Tracking 30799 as yet unmatched pairs. 99 records in RAM.
INFO 2026-06-08 08:42:08 MarkDuplicates Read 14,000,000 records. Elapsed time: 00:00:30s. Time for last 1,000,000: 2s. Last read position: chr1:26,280,133
INFO 2026-06-08 08:42:08 MarkDuplicates Tracking 33125 as yet unmatched pairs. 453 records in RAM.
INFO 2026-06-08 08:42:10 MarkDuplicates Read 15,000,000 records. Elapsed time: 00:00:33s. Time for last 1,000,000: 2s. Last read position: chr1:26,941,542
INFO 2026-06-08 08:42:10 MarkDuplicates Tracking 35141 as yet unmatched pairs. 178 records in RAM.
INFO 2026-06-08 08:42:12 MarkDuplicates Read 16,000,000 records. Elapsed time: 00:00:34s. Time for last 1,000,000: 1s. Last read position: chr1:28,535,916
INFO 2026-06-08 08:42:12 MarkDuplicates Tracking 37527 as yet unmatched pairs. 336 records in RAM.
INFO 2026-06-08 08:42:14 MarkDuplicates Read 17,000,000 records. Elapsed time: 00:00:36s. Time for last 1,000,000: 2s. Last read position: chr1:31,635,220
INFO 2026-06-08 08:42:14 MarkDuplicates Tracking 39660 as yet unmatched pairs. 221 records in RAM.
INFO 2026-06-08 08:42:16 MarkDuplicates Read 18,000,000 records. Elapsed time: 00:00:39s. Time for last 1,000,000: 2s. Last read position: chr1:32,651,957
INFO 2026-06-08 08:42:16 MarkDuplicates Tracking 42523 as yet unmatched pairs. 770 records in RAM.
INFO 2026-06-08 08:42:18 MarkDuplicates Read 19,000,000 records. Elapsed time: 00:00:41s. Time for last 1,000,000: 1s. Last read position: chr1:35,192,223
INFO 2026-06-08 08:42:18 MarkDuplicates Tracking 44286 as yet unmatched pairs. 154 records in RAM.
INFO 2026-06-08 08:42:20 MarkDuplicates Read 20,000,000 records. Elapsed time: 00:00:43s. Time for last 1,000,000: 2s. Last read position: chr1:36,461,302
INFO 2026-06-08 08:42:20 MarkDuplicates Tracking 46998 as yet unmatched pairs. 492 records in RAM.
INFO 2026-06-08 08:42:22 MarkDuplicates Read 21,000,000 records. Elapsed time: 00:00:44s. Time for last 1,000,000: 1s. Last read position: chr1:39,439,445
INFO 2026-06-08 08:42:22 MarkDuplicates Tracking 49685 as yet unmatched pairs. 839 records in RAM.
INFO 2026-06-08 08:42:24 MarkDuplicates Read 22,000,000 records. Elapsed time: 00:00:46s. Time for last 1,000,000: 2s. Last read position: chr1:41,017,092
INFO 2026-06-08 08:42:24 MarkDuplicates Tracking 51113 as yet unmatched pairs. 60 records in RAM.
INFO 2026-06-08 08:42:25 MarkDuplicates Read 23,000,000 records. Elapsed time: 00:00:48s. Time for last 1,000,000: 1s. Last read position: chr1:42,930,654
INFO 2026-06-08 08:42:25 MarkDuplicates Tracking 58480 as yet unmatched pairs. 5160 records in RAM.
INFO 2026-06-08 08:42:27 MarkDuplicates Read 24,000,000 records. Elapsed time: 00:00:50s. Time for last 1,000,000: 1s. Last read position: chr1:43,598,038
INFO 2026-06-08 08:42:27 MarkDuplicates Tracking 56817 as yet unmatched pairs. 1000 records in RAM.
INFO 2026-06-08 08:42:29 MarkDuplicates Read 25,000,000 records. Elapsed time: 00:00:51s. Time for last 1,000,000: 1s. Last read position: chr1:45,014,987
INFO 2026-06-08 08:42:29 MarkDuplicates Tracking 58310 as yet unmatched pairs. 132 records in RAM.
INFO 2026-06-08 08:42:30 MarkDuplicates Read 26,000,000 records. Elapsed time: 00:00:53s. Time for last 1,000,000: 1s. Last read position: chr1:47,262,995
INFO 2026-06-08 08:42:30 MarkDuplicates Tracking 60654 as yet unmatched pairs. 208 records in RAM.
INFO 2026-06-08 08:42:32 MarkDuplicates Read 27,000,000 records. Elapsed time: 00:00:55s. Time for last 1,000,000: 1s. Last read position: chr1:54,043,480
INFO 2026-06-08 08:42:32 MarkDuplicates Tracking 63367 as yet unmatched pairs. 550 records in RAM.
INFO 2026-06-08 08:42:34 MarkDuplicates Read 28,000,000 records. Elapsed time: 00:00:57s. Time for last 1,000,000: 1s. Last read position: chr1:64,847,645
INFO 2026-06-08 08:42:34 MarkDuplicates Tracking 65126 as yet unmatched pairs. 157 records in RAM.
INFO 2026-06-08 08:42:36 MarkDuplicates Read 29,000,000 records. Elapsed time: 00:00:58s. Time for last 1,000,000: 1s. Last read position: chr1:77,968,191
INFO 2026-06-08 08:42:36 MarkDuplicates Tracking 67077 as yet unmatched pairs. 113 records in RAM.
INFO 2026-06-08 08:42:38 MarkDuplicates Read 30,000,000 records. Elapsed time: 00:01:00s. Time for last 1,000,000: 2s. Last read position: chr1:93,114,712
INFO 2026-06-08 08:42:38 MarkDuplicates Tracking 69564 as yet unmatched pairs. 419 records in RAM.
INFO 2026-06-08 08:42:39 MarkDuplicates Read 31,000,000 records. Elapsed time: 00:01:02s. Time for last 1,000,000: 1s. Last read position: chr1:108,628,171
INFO 2026-06-08 08:42:39 MarkDuplicates Tracking 71237 as yet unmatched pairs. 62 records in RAM.
INFO 2026-06-08 08:42:41 MarkDuplicates Read 32,000,000 records. Elapsed time: 00:01:03s. Time for last 1,000,000: 1s. Last read position: chr1:110,894,326
INFO 2026-06-08 08:42:41 MarkDuplicates Tracking 73632 as yet unmatched pairs. 190 records in RAM.
INFO 2026-06-08 08:42:43 MarkDuplicates Read 33,000,000 records. Elapsed time: 00:01:06s. Time for last 1,000,000: 2s. Last read position: chr1:114,410,221
INFO 2026-06-08 08:42:43 MarkDuplicates Tracking 76142 as yet unmatched pairs. 617 records in RAM.
INFO 2026-06-08 08:42:45 MarkDuplicates Read 34,000,000 records. Elapsed time: 00:01:07s. Time for last 1,000,000: 1s. Last read position: chr1:117,076,711
INFO 2026-06-08 08:42:45 MarkDuplicates Tracking 77883 as yet unmatched pairs. 97 records in RAM.
INFO 2026-06-08 08:42:47 MarkDuplicates Read 35,000,000 records. Elapsed time: 00:01:10s. Time for last 1,000,000: 2s. Last read position: chr1:120,579,175
INFO 2026-06-08 08:42:47 MarkDuplicates Tracking 79929 as yet unmatched pairs. 7 records in RAM.
INFO 2026-06-08 08:42:49 MarkDuplicates Read 36,000,000 records. Elapsed time: 00:01:12s. Time for last 1,000,000: 2s. Last read position: chr1:146,128,266
INFO 2026-06-08 08:42:49 MarkDuplicates Tracking 81301 as yet unmatched pairs. 133 records in RAM.
INFO 2026-06-08 08:42:51 MarkDuplicates Read 37,000,000 records. Elapsed time: 00:01:14s. Time for last 1,000,000: 1s. Last read position: chr1:149,430,947
INFO 2026-06-08 08:42:51 MarkDuplicates Tracking 82529 as yet unmatched pairs. 233 records in RAM.
INFO 2026-06-08 08:42:53 MarkDuplicates Read 38,000,000 records. Elapsed time: 00:01:15s. Time for last 1,000,000: 1s. Last read position: chr1:149,842,423
INFO 2026-06-08 08:42:53 MarkDuplicates Tracking 85404 as yet unmatched pairs. 1228 records in RAM.
INFO 2026-06-08 08:42:54 MarkDuplicates Read 39,000,000 records. Elapsed time: 00:01:17s. Time for last 1,000,000: 1s. Last read position: chr1:149,887,060
INFO 2026-06-08 08:42:54 MarkDuplicates Tracking 86434 as yet unmatched pairs. 1344 records in RAM.
INFO 2026-06-08 08:42:56 MarkDuplicates Read 40,000,000 records. Elapsed time: 00:01:18s. Time for last 1,000,000: 1s. Last read position: chr1:150,733,018
INFO 2026-06-08 08:42:56 MarkDuplicates Tracking 87505 as yet unmatched pairs. 310 records in RAM.
INFO 2026-06-08 08:42:58 MarkDuplicates Read 41,000,000 records. Elapsed time: 00:01:21s. Time for last 1,000,000: 2s. Last read position: chr1:151,895,150
INFO 2026-06-08 08:42:58 MarkDuplicates Tracking 89650 as yet unmatched pairs. 136 records in RAM.
INFO 2026-06-08 08:43:01 MarkDuplicates Read 42,000,000 records. Elapsed time: 00:01:23s. Time for last 1,000,000: 2s. Last read position: chr1:153,819,662
INFO 2026-06-08 08:43:01 MarkDuplicates Tracking 91791 as yet unmatched pairs. 115 records in RAM.
INFO 2026-06-08 08:43:03 MarkDuplicates Read 43,000,000 records. Elapsed time: 00:01:25s. Time for last 1,000,000: 2s. Last read position: chr1:154,274,963
INFO 2026-06-08 08:43:03 MarkDuplicates Tracking 94226 as yet unmatched pairs. 512 records in RAM.
INFO 2026-06-08 08:43:05 MarkDuplicates Read 44,000,000 records. Elapsed time: 00:01:28s. Time for last 1,000,000: 2s. Last read position: chr1:155,176,915
INFO 2026-06-08 08:43:05 MarkDuplicates Tracking 95959 as yet unmatched pairs. 6 records in RAM.
INFO 2026-06-08 08:43:07 MarkDuplicates Read 45,000,000 records. Elapsed time: 00:01:30s. Time for last 1,000,000: 1s. Last read position: chr1:155,767,446
INFO 2026-06-08 08:43:07 MarkDuplicates Tracking 98071 as yet unmatched pairs. 174 records in RAM.
INFO 2026-06-08 08:43:09 MarkDuplicates Read 46,000,000 records. Elapsed time: 00:01:31s. Time for last 1,000,000: 1s. Last read position: chr1:156,136,251
INFO 2026-06-08 08:43:09 MarkDuplicates Tracking 101111 as yet unmatched pairs. 500 records in RAM.
INFO 2026-06-08 08:43:11 MarkDuplicates Read 47,000,000 records. Elapsed time: 00:01:33s. Time for last 1,000,000: 1s. Last read position: chr1:156,592,182
INFO 2026-06-08 08:43:11 MarkDuplicates Tracking 103188 as yet unmatched pairs. 178 records in RAM.
INFO 2026-06-08 08:43:12 MarkDuplicates Read 48,000,000 records. Elapsed time: 00:01:35s. Time for last 1,000,000: 1s. Last read position: chr1:160,292,591
INFO 2026-06-08 08:43:12 MarkDuplicates Tracking 105816 as yet unmatched pairs. 553 records in RAM.
INFO 2026-06-08 08:43:14 MarkDuplicates Read 49,000,000 records. Elapsed time: 00:01:37s. Time for last 1,000,000: 1s. Last read position: chr1:161,623,853
INFO 2026-06-08 08:43:14 MarkDuplicates Tracking 107610 as yet unmatched pairs. 280 records in RAM.
INFO 2026-06-08 08:43:16 MarkDuplicates Read 50,000,000 records. Elapsed time: 00:01:39s. Time for last 1,000,000: 1s. Last read position: chr1:169,131,314
INFO 2026-06-08 08:43:16 MarkDuplicates Tracking 111150 as yet unmatched pairs. 1568 records in RAM.
INFO 2026-06-08 08:43:17 MarkDuplicates Read 51,000,000 records. Elapsed time: 00:01:40s. Time for last 1,000,000: 1s. Last read position: chr1:176,162,875
INFO 2026-06-08 08:43:17 MarkDuplicates Tracking 111927 as yet unmatched pairs. 162 records in RAM.
INFO 2026-06-08 08:43:19 MarkDuplicates Read 52,000,000 records. Elapsed time: 00:01:42s. Time for last 1,000,000: 2s. Last read position: chr1:182,982,260
INFO 2026-06-08 08:43:19 MarkDuplicates Tracking 114063 as yet unmatched pairs. 5 records in RAM.
INFO 2026-06-08 08:43:21 MarkDuplicates Read 53,000,000 records. Elapsed time: 00:01:44s. Time for last 1,000,000: 2s. Last read position: chr1:186,356,391
INFO 2026-06-08 08:43:21 MarkDuplicates Tracking 116460 as yet unmatched pairs. 326 records in RAM.
INFO 2026-06-08 08:43:23 MarkDuplicates Read 54,000,000 records. Elapsed time: 00:01:46s. Time for last 1,000,000: 1s. Last read position: chr1:201,468,483
INFO 2026-06-08 08:43:23 MarkDuplicates Tracking 118606 as yet unmatched pairs. 218 records in RAM.
INFO 2026-06-08 08:43:25 MarkDuplicates Read 55,000,000 records. Elapsed time: 00:01:47s. Time for last 1,000,000: 1s. Last read position: chr1:203,838,047
INFO 2026-06-08 08:43:25 MarkDuplicates Tracking 120923 as yet unmatched pairs. 268 records in RAM.
INFO 2026-06-08 08:43:26 MarkDuplicates Read 56,000,000 records. Elapsed time: 00:01:49s. Time for last 1,000,000: 1s. Last read position: chr1:207,023,000
INFO 2026-06-08 08:43:26 MarkDuplicates Tracking 123023 as yet unmatched pairs. 397 records in RAM.
INFO 2026-06-08 08:43:28 MarkDuplicates Read 57,000,000 records. Elapsed time: 00:01:50s. Time for last 1,000,000: 1s. Last read position: chr1:212,100,982
INFO 2026-06-08 08:43:28 MarkDuplicates Tracking 124982 as yet unmatched pairs. 29 records in RAM.
INFO 2026-06-08 08:43:29 MarkDuplicates Read 58,000,000 records. Elapsed time: 00:01:52s. Time for last 1,000,000: 1s. Last read position: chr1:220,272,205
INFO 2026-06-08 08:43:29 MarkDuplicates Tracking 127432 as yet unmatched pairs. 361 records in RAM.
INFO 2026-06-08 08:43:31 MarkDuplicates Read 59,000,000 records. Elapsed time: 00:01:54s. Time for last 1,000,000: 1s. Last read position: chr1:226,361,487
INFO 2026-06-08 08:43:31 MarkDuplicates Tracking 129349 as yet unmatched pairs. 260 records in RAM.
INFO 2026-06-08 08:43:33 MarkDuplicates Read 60,000,000 records. Elapsed time: 00:01:55s. Time for last 1,000,000: 1s. Last read position: chr1:230,688,473
INFO 2026-06-08 08:43:33 MarkDuplicates Tracking 131554 as yet unmatched pairs. 67 records in RAM.
INFO 2026-06-08 08:43:34 MarkDuplicates Read 61,000,000 records. Elapsed time: 00:01:57s. Time for last 1,000,000: 1s. Last read position: chr1:236,835,672
INFO 2026-06-08 08:43:34 MarkDuplicates Tracking 134032 as yet unmatched pairs. 100 records in RAM.
INFO 2026-06-08 08:43:36 MarkDuplicates Read 62,000,000 records. Elapsed time: 00:01:58s. Time for last 1,000,000: 1s. Last read position: chr1:246,862,077
INFO 2026-06-08 08:43:36 MarkDuplicates Tracking 136571 as yet unmatched pairs. 378 records in RAM.
INFO 2026-06-08 08:43:39 MarkDuplicates Read 63,000,000 records. Elapsed time: 00:02:01s. Time for last 1,000,000: 2s. Last read position: chr2:9,493,741
INFO 2026-06-08 08:43:39 MarkDuplicates Tracking 138633 as yet unmatched pairs. 138316 records in RAM.
INFO 2026-06-08 08:43:41 MarkDuplicates Read 64,000,000 records. Elapsed time: 00:02:03s. Time for last 1,000,000: 2s. Last read position: chr2:17,649,433
INFO 2026-06-08 08:43:41 MarkDuplicates Tracking 140975 as yet unmatched pairs. 140653 records in RAM.
INFO 2026-06-08 08:43:43 MarkDuplicates Read 65,000,000 records. Elapsed time: 00:02:06s. Time for last 1,000,000: 2s. Last read position: chr2:25,407,659
INFO 2026-06-08 08:43:43 MarkDuplicates Tracking 143030 as yet unmatched pairs. 142707 records in RAM.
INFO 2026-06-08 08:43:45 MarkDuplicates Read 66,000,000 records. Elapsed time: 00:02:08s. Time for last 1,000,000: 1s. Last read position: chr2:27,241,100
INFO 2026-06-08 08:43:45 MarkDuplicates Tracking 145471 as yet unmatched pairs. 145147 records in RAM.
INFO 2026-06-08 08:43:47 MarkDuplicates Read 67,000,000 records. Elapsed time: 00:02:10s. Time for last 1,000,000: 2s. Last read position: chr2:32,039,480
INFO 2026-06-08 08:43:47 MarkDuplicates Tracking 147655 as yet unmatched pairs. 147326 records in RAM.
INFO 2026-06-08 08:43:49 MarkDuplicates Read 68,000,000 records. Elapsed time: 00:02:12s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,264
INFO 2026-06-08 08:43:49 MarkDuplicates Tracking 290714 as yet unmatched pairs. 140299 records in RAM.
INFO 2026-06-08 08:43:52 MarkDuplicates Read 69,000,000 records. Elapsed time: 00:02:15s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,264
INFO 2026-06-08 08:43:52 MarkDuplicates Tracking 975774 as yet unmatched pairs. 102668 records in RAM.
INFO 2026-06-08 08:43:54 MarkDuplicates Read 70,000,000 records. Elapsed time: 00:02:16s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,406
INFO 2026-06-08 08:43:54 MarkDuplicates Tracking 1198318 as yet unmatched pairs. 90849 records in RAM.
INFO 2026-06-08 08:43:55 MarkDuplicates Read 71,000,000 records. Elapsed time: 00:02:18s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,423
INFO 2026-06-08 08:43:55 MarkDuplicates Tracking 1260843 as yet unmatched pairs. 87662 records in RAM.
INFO 2026-06-08 08:43:57 MarkDuplicates Read 72,000,000 records. Elapsed time: 00:02:19s. Time for last 1,000,000: 1s. Last read position: chr2:42,295,404
INFO 2026-06-08 08:43:57 MarkDuplicates Tracking 1278219 as yet unmatched pairs. 84891 records in RAM.
INFO 2026-06-08 08:43:58 MarkDuplicates Read 73,000,000 records. Elapsed time: 00:02:21s. Time for last 1,000,000: 1s. Last read position: chr2:47,373,900
INFO 2026-06-08 08:43:58 MarkDuplicates Tracking 1276832 as yet unmatched pairs. 83502 records in RAM.
INFO 2026-06-08 08:44:00 MarkDuplicates Read 74,000,000 records. Elapsed time: 00:02:23s. Time for last 1,000,000: 1s. Last read position: chr2:55,027,354
INFO 2026-06-08 08:44:00 MarkDuplicates Tracking 1273879 as yet unmatched pairs. 80539 records in RAM.
INFO 2026-06-08 08:44:02 MarkDuplicates Read 75,000,000 records. Elapsed time: 00:02:25s. Time for last 1,000,000: 1s. Last read position: chr2:61,492,597
INFO 2026-06-08 08:44:02 MarkDuplicates Tracking 1271442 as yet unmatched pairs. 78088 records in RAM.
INFO 2026-06-08 08:44:04 MarkDuplicates Read 76,000,000 records. Elapsed time: 00:02:26s. Time for last 1,000,000: 1s. Last read position: chr2:69,370,079
INFO 2026-06-08 08:44:04 MarkDuplicates Tracking 1270016 as yet unmatched pairs. 76658 records in RAM.
INFO 2026-06-08 08:44:05 MarkDuplicates Read 77,000,000 records. Elapsed time: 00:02:28s. Time for last 1,000,000: 1s. Last read position: chr2:73,265,429
INFO 2026-06-08 08:44:05 MarkDuplicates Tracking 1267072 as yet unmatched pairs. 73708 records in RAM.
INFO 2026-06-08 08:44:07 MarkDuplicates Read 78,000,000 records. Elapsed time: 00:02:30s. Time for last 1,000,000: 1s. Last read position: chr2:74,462,420
INFO 2026-06-08 08:44:07 MarkDuplicates Tracking 1264949 as yet unmatched pairs. 71583 records in RAM.
INFO 2026-06-08 08:44:09 MarkDuplicates Read 79,000,000 records. Elapsed time: 00:02:32s. Time for last 1,000,000: 1s. Last read position: chr2:85,554,158
INFO 2026-06-08 08:44:09 MarkDuplicates Tracking 1262598 as yet unmatched pairs. 69219 records in RAM.
INFO 2026-06-08 08:44:11 MarkDuplicates Read 80,000,000 records. Elapsed time: 00:02:33s. Time for last 1,000,000: 1s. Last read position: chr2:95,047,986
INFO 2026-06-08 08:44:11 MarkDuplicates Tracking 1260530 as yet unmatched pairs. 67147 records in RAM.
INFO 2026-06-08 08:44:12 MarkDuplicates Read 81,000,000 records. Elapsed time: 00:02:35s. Time for last 1,000,000: 1s. Last read position: chr2:97,735,374
INFO 2026-06-08 08:44:12 MarkDuplicates Tracking 1258350 as yet unmatched pairs. 64966 records in RAM.
INFO 2026-06-08 08:44:14 MarkDuplicates Read 82,000,000 records. Elapsed time: 00:02:37s. Time for last 1,000,000: 1s. Last read position: chr2:102,164,996
INFO 2026-06-08 08:44:14 MarkDuplicates Tracking 1256125 as yet unmatched pairs. 62738 records in RAM.
INFO 2026-06-08 08:44:16 MarkDuplicates Read 83,000,000 records. Elapsed time: 00:02:38s. Time for last 1,000,000: 1s. Last read position: chr2:108,772,562
INFO 2026-06-08 08:44:16 MarkDuplicates Tracking 1254891 as yet unmatched pairs. 61500 records in RAM.
INFO 2026-06-08 08:44:17 MarkDuplicates Read 84,000,000 records. Elapsed time: 00:02:40s. Time for last 1,000,000: 1s. Last read position: chr2:112,112,906
INFO 2026-06-08 08:44:17 MarkDuplicates Tracking 1253099 as yet unmatched pairs. 59707 records in RAM.
INFO 2026-06-08 08:44:19 MarkDuplicates Read 85,000,000 records. Elapsed time: 00:02:41s. Time for last 1,000,000: 1s. Last read position: chr2:120,970,449
INFO 2026-06-08 08:44:19 MarkDuplicates Tracking 1251395 as yet unmatched pairs. 57999 records in RAM.
INFO 2026-06-08 08:44:20 MarkDuplicates Read 86,000,000 records. Elapsed time: 00:02:43s. Time for last 1,000,000: 1s. Last read position: chr2:131,105,344
INFO 2026-06-08 08:44:20 MarkDuplicates Tracking 1249127 as yet unmatched pairs. 55725 records in RAM.
INFO 2026-06-08 08:44:22 MarkDuplicates Read 87,000,000 records. Elapsed time: 00:02:45s. Time for last 1,000,000: 1s. Last read position: chr2:151,437,255
INFO 2026-06-08 08:44:22 MarkDuplicates Tracking 1247225 as yet unmatched pairs. 53815 records in RAM.
INFO 2026-06-08 08:44:24 MarkDuplicates Read 88,000,000 records. Elapsed time: 00:02:46s. Time for last 1,000,000: 1s. Last read position: chr2:165,759,438
INFO 2026-06-08 08:44:24 MarkDuplicates Tracking 1245045 as yet unmatched pairs. 51628 records in RAM.
INFO 2026-06-08 08:44:25 MarkDuplicates Read 89,000,000 records. Elapsed time: 00:02:48s. Time for last 1,000,000: 1s. Last read position: chr2:172,489,563
INFO 2026-06-08 08:44:25 MarkDuplicates Tracking 1243929 as yet unmatched pairs. 50505 records in RAM.
INFO 2026-06-08 08:44:27 MarkDuplicates Read 90,000,000 records. Elapsed time: 00:02:50s. Time for last 1,000,000: 1s. Last read position: chr2:177,521,332
INFO 2026-06-08 08:44:27 MarkDuplicates Tracking 1240955 as yet unmatched pairs. 47526 records in RAM.
INFO 2026-06-08 08:44:29 MarkDuplicates Read 91,000,000 records. Elapsed time: 00:02:51s. Time for last 1,000,000: 1s. Last read position: chr2:187,360,606
INFO 2026-06-08 08:44:29 MarkDuplicates Tracking 1238543 as yet unmatched pairs. 45102 records in RAM.
INFO 2026-06-08 08:44:30 MarkDuplicates Read 92,000,000 records. Elapsed time: 00:02:53s. Time for last 1,000,000: 1s. Last read position: chr2:189,001,416
INFO 2026-06-08 08:44:30 MarkDuplicates Tracking 1239468 as yet unmatched pairs. 46026 records in RAM.
INFO 2026-06-08 08:44:32 MarkDuplicates Read 93,000,000 records. Elapsed time: 00:02:54s. Time for last 1,000,000: 1s. Last read position: chr2:189,072,040
INFO 2026-06-08 08:44:32 MarkDuplicates Tracking 1234647 as yet unmatched pairs. 41203 records in RAM.
INFO 2026-06-08 08:44:34 MarkDuplicates Read 94,000,000 records. Elapsed time: 00:02:56s. Time for last 1,000,000: 1s. Last read position: chr2:197,401,786
INFO 2026-06-08 08:44:34 MarkDuplicates Tracking 1231400 as yet unmatched pairs. 37954 records in RAM.
INFO 2026-06-08 08:44:35 MarkDuplicates Read 95,000,000 records. Elapsed time: 00:02:58s. Time for last 1,000,000: 1s. Last read position: chr2:202,035,117
INFO 2026-06-08 08:44:35 MarkDuplicates Tracking 1228828 as yet unmatched pairs. 35380 records in RAM.
INFO 2026-06-08 08:44:37 MarkDuplicates Read 96,000,000 records. Elapsed time: 00:03:00s. Time for last 1,000,000: 1s. Last read position: chr2:208,243,556
INFO 2026-06-08 08:44:37 MarkDuplicates Tracking 1227033 as yet unmatched pairs. 33579 records in RAM.
INFO 2026-06-08 08:44:39 MarkDuplicates Read 97,000,000 records. Elapsed time: 00:03:01s. Time for last 1,000,000: 1s. Last read position: chr2:215,371,978
INFO 2026-06-08 08:44:39 MarkDuplicates Tracking 1228906 as yet unmatched pairs. 35440 records in RAM.
INFO 2026-06-08 08:44:40 MarkDuplicates Read 98,000,000 records. Elapsed time: 00:03:03s. Time for last 1,000,000: 1s. Last read position: chr2:215,376,566
INFO 2026-06-08 08:44:40 MarkDuplicates Tracking 1227521 as yet unmatched pairs. 34053 records in RAM.
INFO 2026-06-08 08:44:43 MarkDuplicates Read 99,000,000 records. Elapsed time: 00:03:05s. Time for last 1,000,000: 2s. Last read position: chr2:215,386,806
INFO 2026-06-08 08:44:43 MarkDuplicates Tracking 1225815 as yet unmatched pairs. 32341 records in RAM.
INFO 2026-06-08 08:44:44 MarkDuplicates Read 100,000,000 records. Elapsed time: 00:03:07s. Time for last 1,000,000: 1s. Last read position: chr2:215,406,251
INFO 2026-06-08 08:44:44 MarkDuplicates Tracking 1222722 as yet unmatched pairs. 29247 records in RAM.
INFO 2026-06-08 08:44:46 MarkDuplicates Read 101,000,000 records. Elapsed time: 00:03:09s. Time for last 1,000,000: 1s. Last read position: chr2:215,419,367
INFO 2026-06-08 08:44:46 MarkDuplicates Tracking 1218628 as yet unmatched pairs. 25150 records in RAM.
INFO 2026-06-08 08:44:48 MarkDuplicates Read 102,000,000 records. Elapsed time: 00:03:11s. Time for last 1,000,000: 1s. Last read position: chr2:215,433,395
INFO 2026-06-08 08:44:48 MarkDuplicates Tracking 1216573 as yet unmatched pairs. 23095 records in RAM.
INFO 2026-06-08 08:44:50 MarkDuplicates Read 103,000,000 records. Elapsed time: 00:03:13s. Time for last 1,000,000: 2s. Last read position: chr2:218,058,730
INFO 2026-06-08 08:44:50 MarkDuplicates Tracking 1211795 as yet unmatched pairs. 18314 records in RAM.
INFO 2026-06-08 08:44:52 MarkDuplicates Read 104,000,000 records. Elapsed time: 00:03:15s. Time for last 1,000,000: 1s. Last read position: chr2:219,247,523
INFO 2026-06-08 08:44:52 MarkDuplicates Tracking 1209480 as yet unmatched pairs. 15994 records in RAM.
INFO 2026-06-08 08:44:54 MarkDuplicates Read 105,000,000 records. Elapsed time: 00:03:16s. Time for last 1,000,000: 1s. Last read position: chr2:224,557,796
INFO 2026-06-08 08:44:54 MarkDuplicates Tracking 1207029 as yet unmatched pairs. 13533 records in RAM.
INFO 2026-06-08 08:44:55 MarkDuplicates Read 106,000,000 records. Elapsed time: 00:03:18s. Time for last 1,000,000: 1s. Last read position: chr2:231,458,281
INFO 2026-06-08 08:44:55 MarkDuplicates Tracking 1208796 as yet unmatched pairs. 15292 records in RAM.
INFO 2026-06-08 08:44:57 MarkDuplicates Read 107,000,000 records. Elapsed time: 00:03:20s. Time for last 1,000,000: 1s. Last read position: chr2:231,712,873
INFO 2026-06-08 08:44:57 MarkDuplicates Tracking 1203755 as yet unmatched pairs. 10246 records in RAM.
INFO 2026-06-08 08:44:59 MarkDuplicates Read 108,000,000 records. Elapsed time: 00:03:21s. Time for last 1,000,000: 1s. Last read position: chr2:237,342,086
INFO 2026-06-08 08:44:59 MarkDuplicates Tracking 1200705 as yet unmatched pairs. 7192 records in RAM.
INFO 2026-06-08 08:45:00 MarkDuplicates Read 109,000,000 records. Elapsed time: 00:03:23s. Time for last 1,000,000: 1s. Last read position: chr2:237,763,057
INFO 2026-06-08 08:45:00 MarkDuplicates Tracking 1198375 as yet unmatched pairs. 4852 records in RAM.
INFO 2026-06-08 08:45:02 MarkDuplicates Read 110,000,000 records. Elapsed time: 00:03:25s. Time for last 1,000,000: 1s. Last read position: chr2:241,126,385
INFO 2026-06-08 08:45:02 MarkDuplicates Tracking 1195436 as yet unmatched pairs. 1898 records in RAM.
INFO 2026-06-08 08:45:04 MarkDuplicates Read 111,000,000 records. Elapsed time: 00:03:27s. Time for last 1,000,000: 2s. Last read position: chr3:5,201,842
INFO 2026-06-08 08:45:04 MarkDuplicates Tracking 1193125 as yet unmatched pairs. 64116 records in RAM.
INFO 2026-06-08 08:45:06 MarkDuplicates Read 112,000,000 records. Elapsed time: 00:03:29s. Time for last 1,000,000: 1s. Last read position: chr3:12,584,630
INFO 2026-06-08 08:45:06 MarkDuplicates Tracking 1190995 as yet unmatched pairs. 61977 records in RAM.
INFO 2026-06-08 08:45:08 MarkDuplicates Read 113,000,000 records. Elapsed time: 00:03:30s. Time for last 1,000,000: 1s. Last read position: chr3:15,262,199
INFO 2026-06-08 08:45:08 MarkDuplicates Tracking 1188541 as yet unmatched pairs. 59521 records in RAM.
INFO 2026-06-08 08:45:09 MarkDuplicates Read 114,000,000 records. Elapsed time: 00:03:32s. Time for last 1,000,000: 1s. Last read position: chr3:31,733,372
INFO 2026-06-08 08:45:09 MarkDuplicates Tracking 1186880 as yet unmatched pairs. 57854 records in RAM.
INFO 2026-06-08 08:45:11 MarkDuplicates Read 115,000,000 records. Elapsed time: 00:03:34s. Time for last 1,000,000: 1s. Last read position: chr3:38,223,903
INFO 2026-06-08 08:45:11 MarkDuplicates Tracking 1184080 as yet unmatched pairs. 55040 records in RAM.
INFO 2026-06-08 08:45:13 MarkDuplicates Read 116,000,000 records. Elapsed time: 00:03:36s. Time for last 1,000,000: 1s. Last read position: chr3:41,225,084
INFO 2026-06-08 08:45:13 MarkDuplicates Tracking 1182825 as yet unmatched pairs. 53779 records in RAM.
INFO 2026-06-08 08:45:15 MarkDuplicates Read 117,000,000 records. Elapsed time: 00:03:38s. Time for last 1,000,000: 1s. Last read position: chr3:45,541,921
INFO 2026-06-08 08:45:15 MarkDuplicates Tracking 1179778 as yet unmatched pairs. 50732 records in RAM.
INFO 2026-06-08 08:45:17 MarkDuplicates Read 118,000,000 records. Elapsed time: 00:03:40s. Time for last 1,000,000: 2s. Last read position: chr3:47,417,646
INFO 2026-06-08 08:45:17 MarkDuplicates Tracking 1177498 as yet unmatched pairs. 48446 records in RAM.
INFO 2026-06-08 08:45:19 MarkDuplicates Read 119,000,000 records. Elapsed time: 00:03:42s. Time for last 1,000,000: 1s. Last read position: chr3:48,460,755
INFO 2026-06-08 08:45:19 MarkDuplicates Tracking 1174958 as yet unmatched pairs. 45899 records in RAM.
INFO 2026-06-08 08:45:21 MarkDuplicates Read 120,000,000 records. Elapsed time: 00:03:44s. Time for last 1,000,000: 1s. Last read position: chr3:49,024,787
INFO 2026-06-08 08:45:21 MarkDuplicates Tracking 1172901 as yet unmatched pairs. 43842 records in RAM.
INFO 2026-06-08 08:45:23 MarkDuplicates Read 121,000,000 records. Elapsed time: 00:03:46s. Time for last 1,000,000: 2s. Last read position: chr3:49,531,017
INFO 2026-06-08 08:45:23 MarkDuplicates Tracking 1170640 as yet unmatched pairs. 41580 records in RAM.
INFO 2026-06-08 08:45:25 MarkDuplicates Read 122,000,000 records. Elapsed time: 00:03:48s. Time for last 1,000,000: 1s. Last read position: chr3:50,249,995
INFO 2026-06-08 08:45:25 MarkDuplicates Tracking 1168330 as yet unmatched pairs. 39267 records in RAM.
INFO 2026-06-08 08:45:26 MarkDuplicates Read 123,000,000 records. Elapsed time: 00:03:49s. Time for last 1,000,000: 1s. Last read position: chr3:51,994,084
INFO 2026-06-08 08:45:26 MarkDuplicates Tracking 1167765 as yet unmatched pairs. 38693 records in RAM.
INFO 2026-06-08 08:45:28 MarkDuplicates Read 124,000,000 records. Elapsed time: 00:03:51s. Time for last 1,000,000: 1s. Last read position: chr3:52,814,297
INFO 2026-06-08 08:45:28 MarkDuplicates Tracking 1163249 as yet unmatched pairs. 34173 records in RAM.
INFO 2026-06-08 08:45:30 MarkDuplicates Read 125,000,000 records. Elapsed time: 00:03:53s. Time for last 1,000,000: 1s. Last read position: chr3:58,112,199
INFO 2026-06-08 08:45:30 MarkDuplicates Tracking 1161144 as yet unmatched pairs. 32066 records in RAM.
INFO 2026-06-08 08:45:32 MarkDuplicates Read 126,000,000 records. Elapsed time: 00:03:55s. Time for last 1,000,000: 2s. Last read position: chr3:70,959,276
INFO 2026-06-08 08:45:32 MarkDuplicates Tracking 1159272 as yet unmatched pairs. 30190 records in RAM.
INFO 2026-06-08 08:45:34 MarkDuplicates Read 127,000,000 records. Elapsed time: 00:03:57s. Time for last 1,000,000: 1s. Last read position: chr3:100,283,741
INFO 2026-06-08 08:45:34 MarkDuplicates Tracking 1156758 as yet unmatched pairs. 27674 records in RAM.
INFO 2026-06-08 08:45:36 MarkDuplicates Read 128,000,000 records. Elapsed time: 00:03:59s. Time for last 1,000,000: 1s. Last read position: chr3:113,724,005
INFO 2026-06-08 08:45:36 MarkDuplicates Tracking 1154952 as yet unmatched pairs. 25864 records in RAM.
INFO 2026-06-08 08:45:38 MarkDuplicates Read 129,000,000 records. Elapsed time: 00:04:01s. Time for last 1,000,000: 1s. Last read position: chr3:123,318,022
INFO 2026-06-08 08:45:38 MarkDuplicates Tracking 1152570 as yet unmatched pairs. 23478 records in RAM.
INFO 2026-06-08 08:45:40 MarkDuplicates Read 130,000,000 records. Elapsed time: 00:04:02s. Time for last 1,000,000: 1s. Last read position: chr3:128,055,539
INFO 2026-06-08 08:45:40 MarkDuplicates Tracking 1151460 as yet unmatched pairs. 22366 records in RAM.
INFO 2026-06-08 08:45:42 MarkDuplicates Read 131,000,000 records. Elapsed time: 00:04:04s. Time for last 1,000,000: 1s. Last read position: chr3:129,572,888
INFO 2026-06-08 08:45:42 MarkDuplicates Tracking 1148046 as yet unmatched pairs. 18947 records in RAM.
INFO 2026-06-08 08:45:43 MarkDuplicates Read 132,000,000 records. Elapsed time: 00:04:06s. Time for last 1,000,000: 1s. Last read position: chr3:138,495,053
INFO 2026-06-08 08:45:43 MarkDuplicates Tracking 1145597 as yet unmatched pairs. 16491 records in RAM.
INFO 2026-06-08 08:45:45 MarkDuplicates Read 133,000,000 records. Elapsed time: 00:04:08s. Time for last 1,000,000: 1s. Last read position: chr3:149,369,809
INFO 2026-06-08 08:45:45 MarkDuplicates Tracking 1144565 as yet unmatched pairs. 15459 records in RAM.
INFO 2026-06-08 08:45:47 MarkDuplicates Read 134,000,000 records. Elapsed time: 00:04:09s. Time for last 1,000,000: 1s. Last read position: chr3:158,660,957
INFO 2026-06-08 08:45:47 MarkDuplicates Tracking 1141234 as yet unmatched pairs. 12122 records in RAM.
INFO 2026-06-08 08:45:49 MarkDuplicates Read 135,000,000 records. Elapsed time: 00:04:12s. Time for last 1,000,000: 2s. Last read position: chr3:172,805,780
INFO 2026-06-08 08:45:49 MarkDuplicates Tracking 1139258 as yet unmatched pairs. 10139 records in RAM.
INFO 2026-06-08 08:45:51 MarkDuplicates Read 136,000,000 records. Elapsed time: 00:04:14s. Time for last 1,000,000: 1s. Last read position: chr3:184,243,855
INFO 2026-06-08 08:45:51 MarkDuplicates Tracking 1137133 as yet unmatched pairs. 8006 records in RAM.
INFO 2026-06-08 08:45:53 MarkDuplicates Read 137,000,000 records. Elapsed time: 00:04:16s. Time for last 1,000,000: 1s. Last read position: chr3:185,417,539
INFO 2026-06-08 08:45:53 MarkDuplicates Tracking 1134457 as yet unmatched pairs. 5328 records in RAM.
INFO 2026-06-08 08:45:55 MarkDuplicates Read 138,000,000 records. Elapsed time: 00:04:17s. Time for last 1,000,000: 1s. Last read position: chr3:194,359,599
INFO 2026-06-08 08:45:55 MarkDuplicates Tracking 1132416 as yet unmatched pairs. 3281 records in RAM.
INFO 2026-06-08 08:45:56 MarkDuplicates Read 139,000,000 records. Elapsed time: 00:04:19s. Time for last 1,000,000: 1s. Last read position: chr3:196,828,354
INFO 2026-06-08 08:45:56 MarkDuplicates Tracking 1130422 as yet unmatched pairs. 1285 records in RAM.
INFO 2026-06-08 08:45:58 MarkDuplicates Read 140,000,000 records. Elapsed time: 00:04:21s. Time for last 1,000,000: 2s. Last read position: chr4:1,024,597
INFO 2026-06-08 08:45:58 MarkDuplicates Tracking 1128196 as yet unmatched pairs. 35196 records in RAM.
INFO 2026-06-08 08:46:00 MarkDuplicates Read 141,000,000 records. Elapsed time: 00:04:22s. Time for last 1,000,000: 1s. Last read position: chr4:1,841,527
INFO 2026-06-08 08:46:00 MarkDuplicates Tracking 1125568 as yet unmatched pairs. 32568 records in RAM.
INFO 2026-06-08 08:46:02 MarkDuplicates Read 142,000,000 records. Elapsed time: 00:04:24s. Time for last 1,000,000: 1s. Last read position: chr4:3,492,897
INFO 2026-06-08 08:46:02 MarkDuplicates Tracking 1123017 as yet unmatched pairs. 30001 records in RAM.
INFO 2026-06-08 08:46:04 MarkDuplicates Read 143,000,000 records. Elapsed time: 00:04:27s. Time for last 1,000,000: 2s. Last read position: chr4:7,781,516
INFO 2026-06-08 08:46:04 MarkDuplicates Tracking 1120496 as yet unmatched pairs. 27475 records in RAM.
INFO 2026-06-08 08:46:06 MarkDuplicates Read 144,000,000 records. Elapsed time: 00:04:29s. Time for last 1,000,000: 1s. Last read position: chr4:24,540,117
INFO 2026-06-08 08:46:06 MarkDuplicates Tracking 1118993 as yet unmatched pairs. 25964 records in RAM.
INFO 2026-06-08 08:46:08 MarkDuplicates Read 145,000,000 records. Elapsed time: 00:04:30s. Time for last 1,000,000: 1s. Last read position: chr4:40,243,906
INFO 2026-06-08 08:46:08 MarkDuplicates Tracking 1116002 as yet unmatched pairs. 22971 records in RAM.
INFO 2026-06-08 08:46:10 MarkDuplicates Read 146,000,000 records. Elapsed time: 00:04:32s. Time for last 1,000,000: 1s. Last read position: chr4:56,448,794
INFO 2026-06-08 08:46:10 MarkDuplicates Tracking 1114576 as yet unmatched pairs. 21541 records in RAM.
INFO 2026-06-08 08:46:11 MarkDuplicates Read 147,000,000 records. Elapsed time: 00:04:34s. Time for last 1,000,000: 1s. Last read position: chr4:73,741,576
INFO 2026-06-08 08:46:11 MarkDuplicates Tracking 1114507 as yet unmatched pairs. 21470 records in RAM.
INFO 2026-06-08 08:46:13 MarkDuplicates Read 148,000,000 records. Elapsed time: 00:04:36s. Time for last 1,000,000: 1s. Last read position: chr4:77,055,364
INFO 2026-06-08 08:46:13 MarkDuplicates Tracking 1110552 as yet unmatched pairs. 17514 records in RAM.
INFO 2026-06-08 08:46:15 MarkDuplicates Read 149,000,000 records. Elapsed time: 00:04:37s. Time for last 1,000,000: 1s. Last read position: chr4:84,808,339
INFO 2026-06-08 08:46:15 MarkDuplicates Tracking 1107207 as yet unmatched pairs. 14169 records in RAM.
INFO 2026-06-08 08:46:17 MarkDuplicates Read 150,000,000 records. Elapsed time: 00:04:39s. Time for last 1,000,000: 1s. Last read position: chr4:101,195,981
INFO 2026-06-08 08:46:17 MarkDuplicates Tracking 1105443 as yet unmatched pairs. 12394 records in RAM.
INFO 2026-06-08 08:46:18 MarkDuplicates Read 151,000,000 records. Elapsed time: 00:04:41s. Time for last 1,000,000: 1s. Last read position: chr4:113,903,182
INFO 2026-06-08 08:46:18 MarkDuplicates Tracking 1103040 as yet unmatched pairs. 9971 records in RAM.
INFO 2026-06-08 08:46:20 MarkDuplicates Read 152,000,000 records. Elapsed time: 00:04:42s. Time for last 1,000,000: 1s. Last read position: chr4:138,180,612
INFO 2026-06-08 08:46:20 MarkDuplicates Tracking 1101869 as yet unmatched pairs. 8791 records in RAM.
INFO 2026-06-08 08:46:21 MarkDuplicates Read 153,000,000 records. Elapsed time: 00:04:44s. Time for last 1,000,000: 1s. Last read position: chr4:151,100,571
INFO 2026-06-08 08:46:21 MarkDuplicates Tracking 1102650 as yet unmatched pairs. 9564 records in RAM.
INFO 2026-06-08 08:46:23 MarkDuplicates Read 154,000,000 records. Elapsed time: 00:04:46s. Time for last 1,000,000: 1s. Last read position: chr4:168,878,144
INFO 2026-06-08 08:46:23 MarkDuplicates Tracking 1097046 as yet unmatched pairs. 3959 records in RAM.
INFO 2026-06-08 08:46:25 MarkDuplicates Read 155,000,000 records. Elapsed time: 00:04:47s. Time for last 1,000,000: 1s. Last read position: chr4:186,603,219
INFO 2026-06-08 08:46:25 MarkDuplicates Tracking 1095256 as yet unmatched pairs. 2166 records in RAM.
INFO 2026-06-08 08:46:27 MarkDuplicates Read 156,000,000 records. Elapsed time: 00:04:50s. Time for last 1,000,000: 2s. Last read position: chr5:1,076,180
INFO 2026-06-08 08:46:27 MarkDuplicates Tracking 1092687 as yet unmatched pairs. 50449 records in RAM.
INFO 2026-06-08 08:46:29 MarkDuplicates Read 157,000,000 records. Elapsed time: 00:04:52s. Time for last 1,000,000: 2s. Last read position: chr5:14,297,132
INFO 2026-06-08 08:46:29 MarkDuplicates Tracking 1090072 as yet unmatched pairs. 47822 records in RAM.
INFO 2026-06-08 08:46:31 MarkDuplicates Read 158,000,000 records. Elapsed time: 00:04:54s. Time for last 1,000,000: 1s. Last read position: chr5:31,515,141
INFO 2026-06-08 08:46:31 MarkDuplicates Tracking 1087761 as yet unmatched pairs. 45509 records in RAM.
INFO 2026-06-08 08:46:33 MarkDuplicates Read 159,000,000 records. Elapsed time: 00:04:55s. Time for last 1,000,000: 1s. Last read position: chr5:40,834,181
INFO 2026-06-08 08:46:33 MarkDuplicates Tracking 1085997 as yet unmatched pairs. 43745 records in RAM.
INFO 2026-06-08 08:46:34 MarkDuplicates Read 160,000,000 records. Elapsed time: 00:04:57s. Time for last 1,000,000: 1s. Last read position: chr5:60,743,785
INFO 2026-06-08 08:46:34 MarkDuplicates Tracking 1083291 as yet unmatched pairs. 41028 records in RAM.
INFO 2026-06-08 08:46:36 MarkDuplicates Read 161,000,000 records. Elapsed time: 00:04:58s. Time for last 1,000,000: 1s. Last read position: chr5:71,041,588
INFO 2026-06-08 08:46:36 MarkDuplicates Tracking 1081614 as yet unmatched pairs. 39347 records in RAM.
INFO 2026-06-08 08:46:37 MarkDuplicates Read 162,000,000 records. Elapsed time: 00:05:00s. Time for last 1,000,000: 1s. Last read position: chr5:76,833,370
INFO 2026-06-08 08:46:37 MarkDuplicates Tracking 1079629 as yet unmatched pairs. 37362 records in RAM.
INFO 2026-06-08 08:46:39 MarkDuplicates Read 163,000,000 records. Elapsed time: 00:05:01s. Time for last 1,000,000: 1s. Last read position: chr5:83,519,941
INFO 2026-06-08 08:46:39 MarkDuplicates Tracking 1077600 as yet unmatched pairs. 35330 records in RAM.
INFO 2026-06-08 08:46:40 MarkDuplicates Read 164,000,000 records. Elapsed time: 00:05:03s. Time for last 1,000,000: 1s. Last read position: chr5:98,779,930
INFO 2026-06-08 08:46:40 MarkDuplicates Tracking 1075266 as yet unmatched pairs. 32992 records in RAM.
INFO 2026-06-08 08:46:42 MarkDuplicates Read 165,000,000 records. Elapsed time: 00:05:04s. Time for last 1,000,000: 1s. Last read position: chr5:122,075,530
INFO 2026-06-08 08:46:42 MarkDuplicates Tracking 1073135 as yet unmatched pairs. 30850 records in RAM.
INFO 2026-06-08 08:46:43 MarkDuplicates Read 166,000,000 records. Elapsed time: 00:05:06s. Time for last 1,000,000: 1s. Last read position: chr5:132,761,553
INFO 2026-06-08 08:46:43 MarkDuplicates Tracking 1071189 as yet unmatched pairs. 28902 records in RAM.
INFO 2026-06-08 08:46:45 MarkDuplicates Read 167,000,000 records. Elapsed time: 00:05:08s. Time for last 1,000,000: 1s. Last read position: chr5:135,345,998
INFO 2026-06-08 08:46:45 MarkDuplicates Tracking 1069165 as yet unmatched pairs. 26872 records in RAM.
INFO 2026-06-08 08:46:47 MarkDuplicates Read 168,000,000 records. Elapsed time: 00:05:09s. Time for last 1,000,000: 1s. Last read position: chr5:138,887,504
INFO 2026-06-08 08:46:47 MarkDuplicates Tracking 1066808 as yet unmatched pairs. 24515 records in RAM.
INFO 2026-06-08 08:46:48 MarkDuplicates Read 169,000,000 records. Elapsed time: 00:05:11s. Time for last 1,000,000: 1s. Last read position: chr5:140,691,657
INFO 2026-06-08 08:46:48 MarkDuplicates Tracking 1064451 as yet unmatched pairs. 22121 records in RAM.
INFO 2026-06-08 08:46:50 MarkDuplicates Read 170,000,000 records. Elapsed time: 00:05:13s. Time for last 1,000,000: 1s. Last read position: chr5:142,314,620
INFO 2026-06-08 08:46:50 MarkDuplicates Tracking 1062325 as yet unmatched pairs. 19994 records in RAM.
INFO 2026-06-08 08:46:51 MarkDuplicates Read 171,000,000 records. Elapsed time: 00:05:14s. Time for last 1,000,000: 1s. Last read position: chr5:150,126,520
INFO 2026-06-08 08:46:51 MarkDuplicates Tracking 1060962 as yet unmatched pairs. 18623 records in RAM.
INFO 2026-06-08 08:46:53 MarkDuplicates Read 172,000,000 records. Elapsed time: 00:05:16s. Time for last 1,000,000: 1s. Last read position: chr5:150,404,727
INFO 2026-06-08 08:46:53 MarkDuplicates Tracking 1065505 as yet unmatched pairs. 23165 records in RAM.
INFO 2026-06-08 08:46:55 MarkDuplicates Read 173,000,000 records. Elapsed time: 00:05:18s. Time for last 1,000,000: 2s. Last read position: chr5:150,695,661
INFO 2026-06-08 08:46:55 MarkDuplicates Tracking 1055524 as yet unmatched pairs. 13184 records in RAM.
INFO 2026-06-08 08:46:57 MarkDuplicates Read 174,000,000 records. Elapsed time: 00:05:19s. Time for last 1,000,000: 1s. Last read position: chr5:157,488,330
INFO 2026-06-08 08:46:57 MarkDuplicates Tracking 1053379 as yet unmatched pairs. 11037 records in RAM.
INFO 2026-06-08 08:46:59 MarkDuplicates Read 175,000,000 records. Elapsed time: 00:05:22s. Time for last 1,000,000: 2s. Last read position: chr5:171,391,750
INFO 2026-06-08 08:46:59 MarkDuplicates Tracking 1056992 as yet unmatched pairs. 14646 records in RAM.
INFO 2026-06-08 08:47:02 MarkDuplicates Read 176,000,000 records. Elapsed time: 00:05:25s. Time for last 1,000,000: 2s. Last read position: chr5:176,384,004
INFO 2026-06-08 08:47:02 MarkDuplicates Tracking 1049555 as yet unmatched pairs. 7205 records in RAM.
INFO 2026-06-08 08:47:04 MarkDuplicates Read 177,000,000 records. Elapsed time: 00:05:26s. Time for last 1,000,000: 1s. Last read position: chr5:177,882,517
INFO 2026-06-08 08:47:04 MarkDuplicates Tracking 1047004 as yet unmatched pairs. 4652 records in RAM.
INFO 2026-06-08 08:47:05 MarkDuplicates Read 178,000,000 records. Elapsed time: 00:05:28s. Time for last 1,000,000: 1s. Last read position: chr5:179,821,067
INFO 2026-06-08 08:47:05 MarkDuplicates Tracking 1047059 as yet unmatched pairs. 4698 records in RAM.
INFO 2026-06-08 08:47:07 MarkDuplicates Read 179,000,000 records. Elapsed time: 00:05:30s. Time for last 1,000,000: 2s. Last read position: chr6:106,736
INFO 2026-06-08 08:47:07 MarkDuplicates Tracking 1042371 as yet unmatched pairs. 74954 records in RAM.
INFO 2026-06-08 08:47:09 MarkDuplicates Read 180,000,000 records. Elapsed time: 00:05:32s. Time for last 1,000,000: 1s. Last read position: chr6:7,230,761
INFO 2026-06-08 08:47:09 MarkDuplicates Tracking 1040647 as yet unmatched pairs. 73225 records in RAM.
INFO 2026-06-08 08:47:11 MarkDuplicates Read 181,000,000 records. Elapsed time: 00:05:33s. Time for last 1,000,000: 1s. Last read position: chr6:7,583,841
INFO 2026-06-08 08:47:11 MarkDuplicates Tracking 1038743 as yet unmatched pairs. 71321 records in RAM.
INFO 2026-06-08 08:47:12 MarkDuplicates Read 182,000,000 records. Elapsed time: 00:05:35s. Time for last 1,000,000: 1s. Last read position: chr6:17,837,074
INFO 2026-06-08 08:47:12 MarkDuplicates Tracking 1035599 as yet unmatched pairs. 68173 records in RAM.
INFO 2026-06-08 08:47:14 MarkDuplicates Read 183,000,000 records. Elapsed time: 00:05:36s. Time for last 1,000,000: 1s. Last read position: chr6:26,055,862
INFO 2026-06-08 08:47:14 MarkDuplicates Tracking 1033379 as yet unmatched pairs. 65951 records in RAM.
INFO 2026-06-08 08:47:15 MarkDuplicates Read 184,000,000 records. Elapsed time: 00:05:38s. Time for last 1,000,000: 1s. Last read position: chr6:26,197,045
INFO 2026-06-08 08:47:15 MarkDuplicates Tracking 1034104 as yet unmatched pairs. 66674 records in RAM.
INFO 2026-06-08 08:47:17 MarkDuplicates Read 185,000,000 records. Elapsed time: 00:05:39s. Time for last 1,000,000: 1s. Last read position: chr6:26,597,210
INFO 2026-06-08 08:47:17 MarkDuplicates Tracking 1028742 as yet unmatched pairs. 61309 records in RAM.
INFO 2026-06-08 08:47:18 MarkDuplicates Read 186,000,000 records. Elapsed time: 00:05:41s. Time for last 1,000,000: 1s. Last read position: chr6:27,810,077
INFO 2026-06-08 08:47:18 MarkDuplicates Tracking 1028791 as yet unmatched pairs. 61358 records in RAM.
INFO 2026-06-08 08:47:19 MarkDuplicates Read 187,000,000 records. Elapsed time: 00:05:42s. Time for last 1,000,000: 1s. Last read position: chr6:27,867,180
INFO 2026-06-08 08:47:19 MarkDuplicates Tracking 1025566 as yet unmatched pairs. 58132 records in RAM.
INFO 2026-06-08 08:47:21 MarkDuplicates Read 188,000,000 records. Elapsed time: 00:05:43s. Time for last 1,000,000: 1s. Last read position: chr6:30,108,059
INFO 2026-06-08 08:47:21 MarkDuplicates Tracking 1022792 as yet unmatched pairs. 55356 records in RAM.
INFO 2026-06-08 08:47:22 MarkDuplicates Read 189,000,000 records. Elapsed time: 00:05:45s. Time for last 1,000,000: 1s. Last read position: chr6:30,722,953
INFO 2026-06-08 08:47:22 MarkDuplicates Tracking 1022497 as yet unmatched pairs. 55059 records in RAM.
INFO 2026-06-08 08:47:24 MarkDuplicates Read 190,000,000 records. Elapsed time: 00:05:47s. Time for last 1,000,000: 1s. Last read position: chr6:31,412,202
INFO 2026-06-08 08:47:24 MarkDuplicates Tracking 1018304 as yet unmatched pairs. 50864 records in RAM.
INFO 2026-06-08 08:47:25 MarkDuplicates Read 191,000,000 records. Elapsed time: 00:05:48s. Time for last 1,000,000: 1s. Last read position: chr6:31,669,918
INFO 2026-06-08 08:47:25 MarkDuplicates Tracking 1015863 as yet unmatched pairs. 48422 records in RAM.
INFO 2026-06-08 08:47:27 MarkDuplicates Read 192,000,000 records. Elapsed time: 00:05:50s. Time for last 1,000,000: 1s. Last read position: chr6:31,829,764
INFO 2026-06-08 08:47:27 MarkDuplicates Tracking 1014511 as yet unmatched pairs. 47070 records in RAM.
INFO 2026-06-08 08:47:29 MarkDuplicates Read 193,000,000 records. Elapsed time: 00:05:51s. Time for last 1,000,000: 1s. Last read position: chr6:32,443,211
INFO 2026-06-08 08:47:29 MarkDuplicates Tracking 1012705 as yet unmatched pairs. 45258 records in RAM.
INFO 2026-06-08 08:47:30 MarkDuplicates Read 194,000,000 records. Elapsed time: 00:05:53s. Time for last 1,000,000: 1s. Last read position: chr6:33,080,723
INFO 2026-06-08 08:47:30 MarkDuplicates Tracking 1009370 as yet unmatched pairs. 41923 records in RAM.
INFO 2026-06-08 08:47:32 MarkDuplicates Read 195,000,000 records. Elapsed time: 00:05:54s. Time for last 1,000,000: 1s. Last read position: chr6:33,417,298
INFO 2026-06-08 08:47:32 MarkDuplicates Tracking 1007849 as yet unmatched pairs. 40397 records in RAM.
INFO 2026-06-08 08:47:34 MarkDuplicates Read 196,000,000 records. Elapsed time: 00:05:57s. Time for last 1,000,000: 2s. Last read position: chr6:35,468,813
INFO 2026-06-08 08:47:34 MarkDuplicates Tracking 1005737 as yet unmatched pairs. 38281 records in RAM.
INFO 2026-06-08 08:47:36 MarkDuplicates Read 197,000,000 records. Elapsed time: 00:05:58s. Time for last 1,000,000: 1s. Last read position: chr6:41,275,069
INFO 2026-06-08 08:47:36 MarkDuplicates Tracking 1002167 as yet unmatched pairs. 34710 records in RAM.
INFO 2026-06-08 08:47:37 MarkDuplicates Read 198,000,000 records. Elapsed time: 00:06:00s. Time for last 1,000,000: 1s. Last read position: chr6:43,141,700
INFO 2026-06-08 08:47:37 MarkDuplicates Tracking 999886 as yet unmatched pairs. 32429 records in RAM.
INFO 2026-06-08 08:47:38 MarkDuplicates Read 199,000,000 records. Elapsed time: 00:06:01s. Time for last 1,000,000: 1s. Last read position: chr6:44,248,758
INFO 2026-06-08 08:47:38 MarkDuplicates Tracking 997629 as yet unmatched pairs. 30165 records in RAM.
INFO 2026-06-08 08:47:40 MarkDuplicates Read 200,000,000 records. Elapsed time: 00:06:03s. Time for last 1,000,000: 1s. Last read position: chr6:52,403,441
INFO 2026-06-08 08:47:40 MarkDuplicates Tracking 995130 as yet unmatched pairs. 27660 records in RAM.
INFO 2026-06-08 08:47:41 MarkDuplicates Read 201,000,000 records. Elapsed time: 00:06:04s. Time for last 1,000,000: 1s. Last read position: chr6:63,691,833
INFO 2026-06-08 08:47:41 MarkDuplicates Tracking 993089 as yet unmatched pairs. 25617 records in RAM.
INFO 2026-06-08 08:47:43 MarkDuplicates Read 202,000,000 records. Elapsed time: 00:06:06s. Time for last 1,000,000: 1s. Last read position: chr6:75,191,709
INFO 2026-06-08 08:47:43 MarkDuplicates Tracking 991077 as yet unmatched pairs. 23603 records in RAM.
INFO 2026-06-08 08:47:45 MarkDuplicates Read 203,000,000 records. Elapsed time: 00:06:07s. Time for last 1,000,000: 1s. Last read position: chr6:87,701,620
INFO 2026-06-08 08:47:45 MarkDuplicates Tracking 988862 as yet unmatched pairs. 21383 records in RAM.
INFO 2026-06-08 08:47:46 MarkDuplicates Read 204,000,000 records. Elapsed time: 00:06:09s. Time for last 1,000,000: 1s. Last read position: chr6:107,040,215
INFO 2026-06-08 08:47:46 MarkDuplicates Tracking 986686 as yet unmatched pairs. 19203 records in RAM.
INFO 2026-06-08 08:47:48 MarkDuplicates Read 205,000,000 records. Elapsed time: 00:06:10s. Time for last 1,000,000: 1s. Last read position: chr6:113,958,651
INFO 2026-06-08 08:47:48 MarkDuplicates Tracking 984619 as yet unmatched pairs. 17132 records in RAM.
INFO 2026-06-08 08:47:49 MarkDuplicates Read 206,000,000 records. Elapsed time: 00:06:12s. Time for last 1,000,000: 1s. Last read position: chr6:130,895,072
INFO 2026-06-08 08:47:49 MarkDuplicates Tracking 982262 as yet unmatched pairs. 14768 records in RAM.
INFO 2026-06-08 08:47:51 MarkDuplicates Read 207,000,000 records. Elapsed time: 00:06:13s. Time for last 1,000,000: 1s. Last read position: chr6:138,334,678
INFO 2026-06-08 08:47:51 MarkDuplicates Tracking 980028 as yet unmatched pairs. 12534 records in RAM.
INFO 2026-06-08 08:47:52 MarkDuplicates Read 208,000,000 records. Elapsed time: 00:06:15s. Time for last 1,000,000: 1s. Last read position: chr6:149,566,410
INFO 2026-06-08 08:47:52 MarkDuplicates Tracking 977922 as yet unmatched pairs. 10426 records in RAM.
INFO 2026-06-08 08:47:54 MarkDuplicates Read 209,000,000 records. Elapsed time: 00:06:16s. Time for last 1,000,000: 1s. Last read position: chr6:157,938,672
INFO 2026-06-08 08:47:54 MarkDuplicates Tracking 975813 as yet unmatched pairs. 8312 records in RAM.
INFO 2026-06-08 08:47:55 MarkDuplicates Read 210,000,000 records. Elapsed time: 00:06:18s. Time for last 1,000,000: 1s. Last read position: chr6:158,770,868
INFO 2026-06-08 08:47:55 MarkDuplicates Tracking 975286 as yet unmatched pairs. 7784 records in RAM.
INFO 2026-06-08 08:47:57 MarkDuplicates Read 211,000,000 records. Elapsed time: 00:06:20s. Time for last 1,000,000: 1s. Last read position: chr6:159,693,157
INFO 2026-06-08 08:47:57 MarkDuplicates Tracking 970753 as yet unmatched pairs. 3245 records in RAM.
INFO 2026-06-08 08:47:58 MarkDuplicates Read 212,000,000 records. Elapsed time: 00:06:21s. Time for last 1,000,000: 1s. Last read position: chr6:169,221,437
INFO 2026-06-08 08:47:58 MarkDuplicates Tracking 968534 as yet unmatched pairs. 1025 records in RAM.
INFO 2026-06-08 08:48:02 MarkDuplicates Read 213,000,000 records. Elapsed time: 00:06:24s. Time for last 1,000,000: 3s. Last read position: chr7:1,487,829
INFO 2026-06-08 08:48:02 MarkDuplicates Tracking 966175 as yet unmatched pairs. 64846 records in RAM.
INFO 2026-06-08 08:48:03 MarkDuplicates Read 214,000,000 records. Elapsed time: 00:06:26s. Time for last 1,000,000: 1s. Last read position: chr7:5,312,503
INFO 2026-06-08 08:48:03 MarkDuplicates Tracking 963280 as yet unmatched pairs. 61951 records in RAM.
INFO 2026-06-08 08:48:05 MarkDuplicates Read 215,000,000 records. Elapsed time: 00:06:28s. Time for last 1,000,000: 1s. Last read position: chr7:5,528,045
INFO 2026-06-08 08:48:05 MarkDuplicates Tracking 970895 as yet unmatched pairs. 69563 records in RAM.
INFO 2026-06-08 08:48:07 MarkDuplicates Read 216,000,000 records. Elapsed time: 00:06:29s. Time for last 1,000,000: 1s. Last read position: chr7:5,529,315
INFO 2026-06-08 08:48:07 MarkDuplicates Tracking 968892 as yet unmatched pairs. 67555 records in RAM.
INFO 2026-06-08 08:48:08 MarkDuplicates Read 217,000,000 records. Elapsed time: 00:06:31s. Time for last 1,000,000: 1s. Last read position: chr7:6,747,182
INFO 2026-06-08 08:48:08 MarkDuplicates Tracking 956094 as yet unmatched pairs. 54748 records in RAM.
INFO 2026-06-08 08:48:10 MarkDuplicates Read 218,000,000 records. Elapsed time: 00:06:32s. Time for last 1,000,000: 1s. Last read position: chr7:24,866,077
INFO 2026-06-08 08:48:10 MarkDuplicates Tracking 954205 as yet unmatched pairs. 52856 records in RAM.
INFO 2026-06-08 08:48:11 MarkDuplicates Read 219,000,000 records. Elapsed time: 00:06:34s. Time for last 1,000,000: 1s. Last read position: chr7:29,924,067
INFO 2026-06-08 08:48:11 MarkDuplicates Tracking 951838 as yet unmatched pairs. 50488 records in RAM.
INFO 2026-06-08 08:48:13 MarkDuplicates Read 220,000,000 records. Elapsed time: 00:06:35s. Time for last 1,000,000: 1s. Last read position: chr7:36,443,782
INFO 2026-06-08 08:48:13 MarkDuplicates Tracking 951646 as yet unmatched pairs. 50294 records in RAM.
INFO 2026-06-08 08:48:14 MarkDuplicates Read 221,000,000 records. Elapsed time: 00:06:37s. Time for last 1,000,000: 1s. Last read position: chr7:44,114,753
INFO 2026-06-08 08:48:14 MarkDuplicates Tracking 947779 as yet unmatched pairs. 46423 records in RAM.
INFO 2026-06-08 08:48:16 MarkDuplicates Read 222,000,000 records. Elapsed time: 00:06:38s. Time for last 1,000,000: 1s. Last read position: chr7:47,369,196
INFO 2026-06-08 08:48:16 MarkDuplicates Tracking 945381 as yet unmatched pairs. 44016 records in RAM.
INFO 2026-06-08 08:48:17 MarkDuplicates Read 223,000,000 records. Elapsed time: 00:06:40s. Time for last 1,000,000: 1s. Last read position: chr7:63,572,491
INFO 2026-06-08 08:48:17 MarkDuplicates Tracking 942881 as yet unmatched pairs. 41514 records in RAM.
INFO 2026-06-08 08:48:19 MarkDuplicates Read 224,000,000 records. Elapsed time: 00:06:41s. Time for last 1,000,000: 1s. Last read position: chr7:73,297,356
INFO 2026-06-08 08:48:19 MarkDuplicates Tracking 941796 as yet unmatched pairs. 40423 records in RAM.
INFO 2026-06-08 08:48:20 MarkDuplicates Read 225,000,000 records. Elapsed time: 00:06:43s. Time for last 1,000,000: 1s. Last read position: chr7:74,519,568
INFO 2026-06-08 08:48:20 MarkDuplicates Tracking 939748 as yet unmatched pairs. 38371 records in RAM.
INFO 2026-06-08 08:48:22 MarkDuplicates Read 226,000,000 records. Elapsed time: 00:06:44s. Time for last 1,000,000: 1s. Last read position: chr7:75,888,315
INFO 2026-06-08 08:48:22 MarkDuplicates Tracking 938061 as yet unmatched pairs. 36682 records in RAM.
INFO 2026-06-08 08:48:23 MarkDuplicates Read 227,000,000 records. Elapsed time: 00:06:46s. Time for last 1,000,000: 1s. Last read position: chr7:77,000,311
INFO 2026-06-08 08:48:23 MarkDuplicates Tracking 935974 as yet unmatched pairs. 34589 records in RAM.
INFO 2026-06-08 08:48:25 MarkDuplicates Read 228,000,000 records. Elapsed time: 00:06:47s. Time for last 1,000,000: 1s. Last read position: chr7:92,387,796
INFO 2026-06-08 08:48:25 MarkDuplicates Tracking 933953 as yet unmatched pairs. 32567 records in RAM.
INFO 2026-06-08 08:48:26 MarkDuplicates Read 229,000,000 records. Elapsed time: 00:06:49s. Time for last 1,000,000: 1s. Last read position: chr7:94,416,482
INFO 2026-06-08 08:48:26 MarkDuplicates Tracking 933462 as yet unmatched pairs. 32073 records in RAM.
INFO 2026-06-08 08:48:28 MarkDuplicates Read 230,000,000 records. Elapsed time: 00:06:51s. Time for last 1,000,000: 1s. Last read position: chr7:98,291,165
INFO 2026-06-08 08:48:28 MarkDuplicates Tracking 929616 as yet unmatched pairs. 28223 records in RAM.
INFO 2026-06-08 08:48:29 MarkDuplicates Read 231,000,000 records. Elapsed time: 00:06:52s. Time for last 1,000,000: 1s. Last read position: chr7:100,071,146
INFO 2026-06-08 08:48:29 MarkDuplicates Tracking 926825 as yet unmatched pairs. 25426 records in RAM.
INFO 2026-06-08 08:48:31 MarkDuplicates Read 232,000,000 records. Elapsed time: 00:06:54s. Time for last 1,000,000: 1s. Last read position: chr7:100,676,534
INFO 2026-06-08 08:48:31 MarkDuplicates Tracking 925125 as yet unmatched pairs. 23723 records in RAM.
INFO 2026-06-08 08:48:34 MarkDuplicates Read 233,000,000 records. Elapsed time: 00:06:57s. Time for last 1,000,000: 2s. Last read position: chr7:102,200,128
INFO 2026-06-08 08:48:34 MarkDuplicates Tracking 922096 as yet unmatched pairs. 20689 records in RAM.
INFO 2026-06-08 08:48:36 MarkDuplicates Read 234,000,000 records. Elapsed time: 00:06:59s. Time for last 1,000,000: 1s. Last read position: chr7:105,532,251
INFO 2026-06-08 08:48:36 MarkDuplicates Tracking 920596 as yet unmatched pairs. 19175 records in RAM.
INFO 2026-06-08 08:48:38 MarkDuplicates Read 235,000,000 records. Elapsed time: 00:07:00s. Time for last 1,000,000: 1s. Last read position: chr7:116,699,589
INFO 2026-06-08 08:48:38 MarkDuplicates Tracking 918778 as yet unmatched pairs. 17356 records in RAM.
INFO 2026-06-08 08:48:39 MarkDuplicates Read 236,000,000 records. Elapsed time: 00:07:02s. Time for last 1,000,000: 1s. Last read position: chr7:128,028,629
INFO 2026-06-08 08:48:39 MarkDuplicates Tracking 917700 as yet unmatched pairs. 16278 records in RAM.
INFO 2026-06-08 08:48:41 MarkDuplicates Read 237,000,000 records. Elapsed time: 00:07:03s. Time for last 1,000,000: 1s. Last read position: chr7:131,464,351
INFO 2026-06-08 08:48:41 MarkDuplicates Tracking 914019 as yet unmatched pairs. 12589 records in RAM.
INFO 2026-06-08 08:48:42 MarkDuplicates Read 238,000,000 records. Elapsed time: 00:07:05s. Time for last 1,000,000: 1s. Last read position: chr7:138,769,171
INFO 2026-06-08 08:48:42 MarkDuplicates Tracking 912120 as yet unmatched pairs. 10687 records in RAM.
INFO 2026-06-08 08:48:44 MarkDuplicates Read 239,000,000 records. Elapsed time: 00:07:06s. Time for last 1,000,000: 1s. Last read position: chr7:142,873,362
INFO 2026-06-08 08:48:44 MarkDuplicates Tracking 909857 as yet unmatched pairs. 8397 records in RAM.
INFO 2026-06-08 08:48:45 MarkDuplicates Read 240,000,000 records. Elapsed time: 00:07:08s. Time for last 1,000,000: 1s. Last read position: chr7:144,365,707
INFO 2026-06-08 08:48:45 MarkDuplicates Tracking 908429 as yet unmatched pairs. 6966 records in RAM.
INFO 2026-06-08 08:48:47 MarkDuplicates Read 241,000,000 records. Elapsed time: 00:07:09s. Time for last 1,000,000: 1s. Last read position: chr7:150,477,128
INFO 2026-06-08 08:48:47 MarkDuplicates Tracking 905846 as yet unmatched pairs. 4381 records in RAM.
INFO 2026-06-08 08:48:48 MarkDuplicates Read 242,000,000 records. Elapsed time: 00:07:11s. Time for last 1,000,000: 1s. Last read position: chr7:152,194,472
INFO 2026-06-08 08:48:48 MarkDuplicates Tracking 903469 as yet unmatched pairs. 2004 records in RAM.
INFO 2026-06-08 08:48:50 MarkDuplicates Read 243,000,000 records. Elapsed time: 00:07:13s. Time for last 1,000,000: 2s. Last read position: chr8:8,318,779
INFO 2026-06-08 08:48:50 MarkDuplicates Tracking 901146 as yet unmatched pairs. 50268 records in RAM.
INFO 2026-06-08 08:48:52 MarkDuplicates Read 244,000,000 records. Elapsed time: 00:07:15s. Time for last 1,000,000: 1s. Last read position: chr8:12,188,161
INFO 2026-06-08 08:48:52 MarkDuplicates Tracking 898631 as yet unmatched pairs. 47752 records in RAM.
INFO 2026-06-08 08:48:54 MarkDuplicates Read 245,000,000 records. Elapsed time: 00:07:16s. Time for last 1,000,000: 1s. Last read position: chr8:22,589,600
INFO 2026-06-08 08:48:54 MarkDuplicates Tracking 896616 as yet unmatched pairs. 45736 records in RAM.
INFO 2026-06-08 08:48:55 MarkDuplicates Read 246,000,000 records. Elapsed time: 00:07:18s. Time for last 1,000,000: 1s. Last read position: chr8:25,366,950
INFO 2026-06-08 08:48:55 MarkDuplicates Tracking 894161 as yet unmatched pairs. 43278 records in RAM.
INFO 2026-06-08 08:48:57 MarkDuplicates Read 247,000,000 records. Elapsed time: 00:07:20s. Time for last 1,000,000: 1s. Last read position: chr8:30,477,799
INFO 2026-06-08 08:48:57 MarkDuplicates Tracking 891658 as yet unmatched pairs. 40770 records in RAM.
INFO 2026-06-08 08:48:59 MarkDuplicates Read 248,000,000 records. Elapsed time: 00:07:21s. Time for last 1,000,000: 1s. Last read position: chr8:38,252,196
INFO 2026-06-08 08:48:59 MarkDuplicates Tracking 889160 as yet unmatched pairs. 38268 records in RAM.
INFO 2026-06-08 08:50:04 MarkDuplicates Read 249,000,000 records. Elapsed time: 00:08:27s. Time for last 1,000,000: 65s. Last read position: chr8:41,941,004
INFO 2026-06-08 08:50:04 MarkDuplicates Tracking 887146 as yet unmatched pairs. 36253 records in RAM.
INFO 2026-06-08 08:50:06 MarkDuplicates Read 250,000,000 records. Elapsed time: 00:08:29s. Time for last 1,000,000: 2s. Last read position: chr8:47,943,244
INFO 2026-06-08 08:50:06 MarkDuplicates Tracking 884802 as yet unmatched pairs. 33905 records in RAM.
INFO 2026-06-08 08:50:08 MarkDuplicates Read 251,000,000 records. Elapsed time: 00:08:30s. Time for last 1,000,000: 1s. Last read position: chr8:60,852,056
INFO 2026-06-08 08:50:08 MarkDuplicates Tracking 882319 as yet unmatched pairs. 31417 records in RAM.
INFO 2026-06-08 08:50:09 MarkDuplicates Read 252,000,000 records. Elapsed time: 00:08:32s. Time for last 1,000,000: 1s. Last read position: chr8:70,128,956
INFO 2026-06-08 08:50:09 MarkDuplicates Tracking 880542 as yet unmatched pairs. 29629 records in RAM.
INFO 2026-06-08 08:50:11 MarkDuplicates Read 253,000,000 records. Elapsed time: 00:08:34s. Time for last 1,000,000: 1s. Last read position: chr8:89,935,529
INFO 2026-06-08 08:50:11 MarkDuplicates Tracking 878831 as yet unmatched pairs. 27912 records in RAM.
INFO 2026-06-08 08:50:13 MarkDuplicates Read 254,000,000 records. Elapsed time: 00:08:35s. Time for last 1,000,000: 1s. Last read position: chr8:100,264,750
INFO 2026-06-08 08:50:13 MarkDuplicates Tracking 876295 as yet unmatched pairs. 25375 records in RAM.
INFO 2026-06-08 08:50:14 MarkDuplicates Read 255,000,000 records. Elapsed time: 00:08:37s. Time for last 1,000,000: 1s. Last read position: chr8:102,300,000
INFO 2026-06-08 08:50:14 MarkDuplicates Tracking 874215 as yet unmatched pairs. 23293 records in RAM.
INFO 2026-06-08 08:50:16 MarkDuplicates Read 256,000,000 records. Elapsed time: 00:08:39s. Time for last 1,000,000: 1s. Last read position: chr8:119,862,797
INFO 2026-06-08 08:50:16 MarkDuplicates Tracking 871723 as yet unmatched pairs. 20799 records in RAM.
INFO 2026-06-08 08:50:18 MarkDuplicates Read 257,000,000 records. Elapsed time: 00:08:40s. Time for last 1,000,000: 1s. Last read position: chr8:127,739,019
INFO 2026-06-08 08:50:18 MarkDuplicates Tracking 871043 as yet unmatched pairs. 20115 records in RAM.
INFO 2026-06-08 08:50:19 MarkDuplicates Read 258,000,000 records. Elapsed time: 00:08:42s. Time for last 1,000,000: 1s. Last read position: chr8:143,560,700
INFO 2026-06-08 08:50:19 MarkDuplicates Tracking 867297 as yet unmatched pairs. 16366 records in RAM.
INFO 2026-06-08 08:50:21 MarkDuplicates Read 259,000,000 records. Elapsed time: 00:08:43s. Time for last 1,000,000: 1s. Last read position: chr8:143,858,182
INFO 2026-06-08 08:50:21 MarkDuplicates Tracking 864466 as yet unmatched pairs. 13534 records in RAM.
INFO 2026-06-08 08:50:22 MarkDuplicates Read 260,000,000 records. Elapsed time: 00:08:45s. Time for last 1,000,000: 1s. Last read position: chr8:143,860,716
INFO 2026-06-08 08:50:22 MarkDuplicates Tracking 864415 as yet unmatched pairs. 13479 records in RAM.
INFO 2026-06-08 08:50:24 MarkDuplicates Read 261,000,000 records. Elapsed time: 00:08:46s. Time for last 1,000,000: 1s. Last read position: chr8:143,862,985
INFO 2026-06-08 08:50:24 MarkDuplicates Tracking 863917 as yet unmatched pairs. 12974 records in RAM.
INFO 2026-06-08 08:50:25 MarkDuplicates Read 262,000,000 records. Elapsed time: 00:08:47s. Time for last 1,000,000: 1s. Last read position: chr8:143,865,194
INFO 2026-06-08 08:50:25 MarkDuplicates Tracking 862258 as yet unmatched pairs. 11313 records in RAM.
INFO 2026-06-08 08:50:26 MarkDuplicates Read 263,000,000 records. Elapsed time: 00:08:49s. Time for last 1,000,000: 1s. Last read position: chr8:143,917,122
INFO 2026-06-08 08:50:26 MarkDuplicates Tracking 861453 as yet unmatched pairs. 10508 records in RAM.
INFO 2026-06-08 08:50:27 MarkDuplicates Read 264,000,000 records. Elapsed time: 00:08:50s. Time for last 1,000,000: 1s. Last read position: chr8:143,924,151
INFO 2026-06-08 08:50:27 MarkDuplicates Tracking 858492 as yet unmatched pairs. 7541 records in RAM.
INFO 2026-06-08 08:50:29 MarkDuplicates Read 265,000,000 records. Elapsed time: 00:08:51s. Time for last 1,000,000: 1s. Last read position: chr8:144,056,955
INFO 2026-06-08 08:50:29 MarkDuplicates Tracking 855077 as yet unmatched pairs. 4110 records in RAM.
INFO 2026-06-08 08:50:30 MarkDuplicates Read 266,000,000 records. Elapsed time: 00:08:53s. Time for last 1,000,000: 1s. Last read position: chr8:144,466,793
INFO 2026-06-08 08:50:30 MarkDuplicates Tracking 852500 as yet unmatched pairs. 1530 records in RAM.
INFO 2026-06-08 08:50:33 MarkDuplicates Read 267,000,000 records. Elapsed time: 00:08:55s. Time for last 1,000,000: 2s. Last read position: chr9:4,722,509
INFO 2026-06-08 08:50:33 MarkDuplicates Tracking 850411 as yet unmatched pairs. 52192 records in RAM.
INFO 2026-06-08 08:50:34 MarkDuplicates Read 268,000,000 records. Elapsed time: 00:08:57s. Time for last 1,000,000: 1s. Last read position: chr9:19,378,842
INFO 2026-06-08 08:50:34 MarkDuplicates Tracking 851339 as yet unmatched pairs. 53116 records in RAM.
INFO 2026-06-08 08:50:35 MarkDuplicates Read 269,000,000 records. Elapsed time: 00:08:58s. Time for last 1,000,000: 1s. Last read position: chr9:34,179,220
INFO 2026-06-08 08:50:35 MarkDuplicates Tracking 846034 as yet unmatched pairs. 47809 records in RAM.
INFO 2026-06-08 08:50:37 MarkDuplicates Read 270,000,000 records. Elapsed time: 00:09:00s. Time for last 1,000,000: 1s. Last read position: chr9:35,689,764
INFO 2026-06-08 08:50:37 MarkDuplicates Tracking 843676 as yet unmatched pairs. 45449 records in RAM.
INFO 2026-06-08 08:50:39 MarkDuplicates Read 271,000,000 records. Elapsed time: 00:09:01s. Time for last 1,000,000: 1s. Last read position: chr9:37,800,872
INFO 2026-06-08 08:50:39 MarkDuplicates Tracking 841381 as yet unmatched pairs. 43138 records in RAM.
INFO 2026-06-08 08:50:40 MarkDuplicates Read 272,000,000 records. Elapsed time: 00:09:03s. Time for last 1,000,000: 1s. Last read position: chr9:73,170,075
INFO 2026-06-08 08:50:40 MarkDuplicates Tracking 840621 as yet unmatched pairs. 42378 records in RAM.
INFO 2026-06-08 08:50:42 MarkDuplicates Read 273,000,000 records. Elapsed time: 00:09:04s. Time for last 1,000,000: 1s. Last read position: chr9:86,946,012
INFO 2026-06-08 08:50:42 MarkDuplicates Tracking 837504 as yet unmatched pairs. 39259 records in RAM.
INFO 2026-06-08 08:50:43 MarkDuplicates Read 274,000,000 records. Elapsed time: 00:09:06s. Time for last 1,000,000: 1s. Last read position: chr9:93,452,271
INFO 2026-06-08 08:50:43 MarkDuplicates Tracking 835402 as yet unmatched pairs. 37157 records in RAM.
INFO 2026-06-08 08:50:45 MarkDuplicates Read 275,000,000 records. Elapsed time: 00:09:07s. Time for last 1,000,000: 1s. Last read position: chr9:98,796,237
INFO 2026-06-08 08:50:45 MarkDuplicates Tracking 832672 as yet unmatched pairs. 34425 records in RAM.
INFO 2026-06-08 08:50:47 MarkDuplicates Read 276,000,000 records. Elapsed time: 00:09:10s. Time for last 1,000,000: 2s. Last read position: chr9:107,300,211
INFO 2026-06-08 08:50:47 MarkDuplicates Tracking 830865 as yet unmatched pairs. 32615 records in RAM.
INFO 2026-06-08 08:50:49 MarkDuplicates Read 277,000,000 records. Elapsed time: 00:09:11s. Time for last 1,000,000: 1s. Last read position: chr9:113,256,154
INFO 2026-06-08 08:50:49 MarkDuplicates Tracking 828119 as yet unmatched pairs. 29861 records in RAM.
INFO 2026-06-08 08:50:50 MarkDuplicates Read 278,000,000 records. Elapsed time: 00:09:13s. Time for last 1,000,000: 1s. Last read position: chr9:120,400,821
INFO 2026-06-08 08:50:50 MarkDuplicates Tracking 825771 as yet unmatched pairs. 27513 records in RAM.
INFO 2026-06-08 08:50:52 MarkDuplicates Read 279,000,000 records. Elapsed time: 00:09:15s. Time for last 1,000,000: 2s. Last read position: chr9:123,583,241
INFO 2026-06-08 08:50:52 MarkDuplicates Tracking 823460 as yet unmatched pairs. 25200 records in RAM.
INFO 2026-06-08 08:50:54 MarkDuplicates Read 280,000,000 records. Elapsed time: 00:09:17s. Time for last 1,000,000: 1s. Last read position: chr9:127,506,768
INFO 2026-06-08 08:50:54 MarkDuplicates Tracking 821592 as yet unmatched pairs. 23330 records in RAM.
INFO 2026-06-08 08:50:56 MarkDuplicates Read 281,000,000 records. Elapsed time: 00:09:18s. Time for last 1,000,000: 1s. Last read position: chr9:128,254,621
INFO 2026-06-08 08:50:56 MarkDuplicates Tracking 818898 as yet unmatched pairs. 20629 records in RAM.
INFO 2026-06-08 08:50:57 MarkDuplicates Read 282,000,000 records. Elapsed time: 00:09:20s. Time for last 1,000,000: 1s. Last read position: chr9:128,752,751
INFO 2026-06-08 08:50:57 MarkDuplicates Tracking 816506 as yet unmatched pairs. 18236 records in RAM.
INFO 2026-06-08 08:50:59 MarkDuplicates Read 283,000,000 records. Elapsed time: 00:09:21s. Time for last 1,000,000: 1s. Last read position: chr9:130,464,116
INFO 2026-06-08 08:50:59 MarkDuplicates Tracking 814003 as yet unmatched pairs. 15720 records in RAM.
INFO 2026-06-08 08:51:00 MarkDuplicates Read 284,000,000 records. Elapsed time: 00:09:23s. Time for last 1,000,000: 1s. Last read position: chr9:131,650,229
INFO 2026-06-08 08:51:00 MarkDuplicates Tracking 811856 as yet unmatched pairs. 13573 records in RAM.
INFO 2026-06-08 08:51:02 MarkDuplicates Read 285,000,000 records. Elapsed time: 00:09:25s. Time for last 1,000,000: 1s. Last read position: chr9:134,033,661
INFO 2026-06-08 08:51:02 MarkDuplicates Tracking 809712 as yet unmatched pairs. 11421 records in RAM.
INFO 2026-06-08 08:51:03 MarkDuplicates Read 286,000,000 records. Elapsed time: 00:09:26s. Time for last 1,000,000: 1s. Last read position: chr9:135,486,275
INFO 2026-06-08 08:51:03 MarkDuplicates Tracking 806993 as yet unmatched pairs. 8702 records in RAM.
INFO 2026-06-08 08:51:05 MarkDuplicates Read 287,000,000 records. Elapsed time: 00:09:28s. Time for last 1,000,000: 1s. Last read position: chr9:136,514,517
INFO 2026-06-08 08:51:05 MarkDuplicates Tracking 804357 as yet unmatched pairs. 6064 records in RAM.
INFO 2026-06-08 08:51:07 MarkDuplicates Read 288,000,000 records. Elapsed time: 00:09:29s. Time for last 1,000,000: 1s. Last read position: chr9:137,078,983
INFO 2026-06-08 08:51:07 MarkDuplicates Tracking 801640 as yet unmatched pairs. 3347 records in RAM.
INFO 2026-06-08 08:51:08 MarkDuplicates Read 289,000,000 records. Elapsed time: 00:09:31s. Time for last 1,000,000: 1s. Last read position: chr9:137,552,233
INFO 2026-06-08 08:51:08 MarkDuplicates Tracking 799407 as yet unmatched pairs. 1107 records in RAM.
INFO 2026-06-08 08:51:10 MarkDuplicates Read 290,000,000 records. Elapsed time: 00:09:33s. Time for last 1,000,000: 1s. Last read position: chr10:5,735,307
INFO 2026-06-08 08:51:10 MarkDuplicates Tracking 796620 as yet unmatched pairs. 41516 records in RAM.
INFO 2026-06-08 08:51:12 MarkDuplicates Read 291,000,000 records. Elapsed time: 00:09:34s. Time for last 1,000,000: 1s. Last read position: chr10:15,841,572
INFO 2026-06-08 08:51:12 MarkDuplicates Tracking 794446 as yet unmatched pairs. 39337 records in RAM.
INFO 2026-06-08 08:51:13 MarkDuplicates Read 292,000,000 records. Elapsed time: 00:09:36s. Time for last 1,000,000: 1s. Last read position: chr10:27,136,346
INFO 2026-06-08 08:51:13 MarkDuplicates Tracking 792480 as yet unmatched pairs. 37369 records in RAM.
INFO 2026-06-08 08:51:15 MarkDuplicates Read 293,000,000 records. Elapsed time: 00:09:38s. Time for last 1,000,000: 1s. Last read position: chr10:32,028,515
INFO 2026-06-08 08:51:15 MarkDuplicates Tracking 793361 as yet unmatched pairs. 38250 records in RAM.
INFO 2026-06-08 08:51:16 MarkDuplicates Read 294,000,000 records. Elapsed time: 00:09:39s. Time for last 1,000,000: 1s. Last read position: chr10:42,820,339
INFO 2026-06-08 08:51:16 MarkDuplicates Tracking 788162 as yet unmatched pairs. 33051 records in RAM.
INFO 2026-06-08 08:51:18 MarkDuplicates Read 295,000,000 records. Elapsed time: 00:09:40s. Time for last 1,000,000: 1s. Last read position: chr10:49,932,165
INFO 2026-06-08 08:51:18 MarkDuplicates Tracking 786381 as yet unmatched pairs. 31263 records in RAM.
INFO 2026-06-08 08:51:19 MarkDuplicates Read 296,000,000 records. Elapsed time: 00:09:42s. Time for last 1,000,000: 1s. Last read position: chr10:68,288,548
INFO 2026-06-08 08:51:19 MarkDuplicates Tracking 784251 as yet unmatched pairs. 29119 records in RAM.
INFO 2026-06-08 08:51:21 MarkDuplicates Read 297,000,000 records. Elapsed time: 00:09:44s. Time for last 1,000,000: 2s. Last read position: chr10:70,736,752
INFO 2026-06-08 08:51:21 MarkDuplicates Tracking 781871 as yet unmatched pairs. 26733 records in RAM.
INFO 2026-06-08 08:51:23 MarkDuplicates Read 298,000,000 records. Elapsed time: 00:09:46s. Time for last 1,000,000: 1s. Last read position: chr10:73,768,857
INFO 2026-06-08 08:51:23 MarkDuplicates Tracking 779712 as yet unmatched pairs. 24573 records in RAM.
INFO 2026-06-08 08:51:25 MarkDuplicates Read 299,000,000 records. Elapsed time: 00:09:47s. Time for last 1,000,000: 1s. Last read position: chr10:78,035,649
INFO 2026-06-08 08:51:25 MarkDuplicates Tracking 779592 as yet unmatched pairs. 24449 records in RAM.
INFO 2026-06-08 08:51:26 MarkDuplicates Read 300,000,000 records. Elapsed time: 00:09:49s. Time for last 1,000,000: 1s. Last read position: chr10:87,051,853
INFO 2026-06-08 08:51:26 MarkDuplicates Tracking 775531 as yet unmatched pairs. 20388 records in RAM.
INFO 2026-06-08 08:51:28 MarkDuplicates Read 301,000,000 records. Elapsed time: 00:09:50s. Time for last 1,000,000: 1s. Last read position: chr10:93,349,928
INFO 2026-06-08 08:51:28 MarkDuplicates Tracking 773185 as yet unmatched pairs. 18042 records in RAM.
INFO 2026-06-08 08:51:29 MarkDuplicates Read 302,000,000 records. Elapsed time: 00:09:52s. Time for last 1,000,000: 1s. Last read position: chr10:97,066,020
INFO 2026-06-08 08:51:29 MarkDuplicates Tracking 770767 as yet unmatched pairs. 15623 records in RAM.
INFO 2026-06-08 08:51:31 MarkDuplicates Read 303,000,000 records. Elapsed time: 00:09:53s. Time for last 1,000,000: 1s. Last read position: chr10:100,489,319
INFO 2026-06-08 08:51:31 MarkDuplicates Tracking 768637 as yet unmatched pairs. 13490 records in RAM.
INFO 2026-06-08 08:51:32 MarkDuplicates Read 304,000,000 records. Elapsed time: 00:09:55s. Time for last 1,000,000: 1s. Last read position: chr10:102,362,520
INFO 2026-06-08 08:51:32 MarkDuplicates Tracking 766311 as yet unmatched pairs. 11164 records in RAM.
INFO 2026-06-08 08:51:34 MarkDuplicates Read 305,000,000 records. Elapsed time: 00:09:57s. Time for last 1,000,000: 1s. Last read position: chr10:104,279,448
INFO 2026-06-08 08:51:34 MarkDuplicates Tracking 764077 as yet unmatched pairs. 8930 records in RAM.
INFO 2026-06-08 08:51:36 MarkDuplicates Read 306,000,000 records. Elapsed time: 00:09:58s. Time for last 1,000,000: 1s. Last read position: chr10:116,960,154
INFO 2026-06-08 08:51:36 MarkDuplicates Tracking 762022 as yet unmatched pairs. 6867 records in RAM.
INFO 2026-06-08 08:51:37 MarkDuplicates Read 307,000,000 records. Elapsed time: 00:10:00s. Time for last 1,000,000: 1s. Last read position: chr10:120,905,397
INFO 2026-06-08 08:51:37 MarkDuplicates Tracking 759431 as yet unmatched pairs. 4275 records in RAM.
INFO 2026-06-08 08:51:38 MarkDuplicates Read 308,000,000 records. Elapsed time: 00:10:01s. Time for last 1,000,000: 1s. Last read position: chr10:128,101,344
INFO 2026-06-08 08:51:38 MarkDuplicates Tracking 757261 as yet unmatched pairs. 2100 records in RAM.
INFO 2026-06-08 08:51:41 MarkDuplicates Read 309,000,000 records. Elapsed time: 00:10:03s. Time for last 1,000,000: 2s. Last read position: chr11:290,671
INFO 2026-06-08 08:51:41 MarkDuplicates Tracking 754834 as yet unmatched pairs. 86288 records in RAM.
INFO 2026-06-08 08:51:43 MarkDuplicates Read 310,000,000 records. Elapsed time: 00:10:05s. Time for last 1,000,000: 1s. Last read position: chr11:592,598
INFO 2026-06-08 08:51:43 MarkDuplicates Tracking 752785 as yet unmatched pairs. 84233 records in RAM.
INFO 2026-06-08 08:51:44 MarkDuplicates Read 311,000,000 records. Elapsed time: 00:10:07s. Time for last 1,000,000: 1s. Last read position: chr11:1,026,062
INFO 2026-06-08 08:51:44 MarkDuplicates Tracking 749951 as yet unmatched pairs. 81395 records in RAM.
INFO 2026-06-08 08:51:45 MarkDuplicates Read 312,000,000 records. Elapsed time: 00:10:08s. Time for last 1,000,000: 1s. Last read position: chr11:1,754,068
INFO 2026-06-08 08:51:45 MarkDuplicates Tracking 750739 as yet unmatched pairs. 82182 records in RAM.
INFO 2026-06-08 08:51:47 MarkDuplicates Read 313,000,000 records. Elapsed time: 00:10:10s. Time for last 1,000,000: 1s. Last read position: chr11:3,038,094
INFO 2026-06-08 08:51:47 MarkDuplicates Tracking 745891 as yet unmatched pairs. 77331 records in RAM.
INFO 2026-06-08 08:51:49 MarkDuplicates Read 314,000,000 records. Elapsed time: 00:10:11s. Time for last 1,000,000: 1s. Last read position: chr11:6,616,699
INFO 2026-06-08 08:51:49 MarkDuplicates Tracking 743620 as yet unmatched pairs. 75051 records in RAM.
INFO 2026-06-08 08:51:50 MarkDuplicates Read 315,000,000 records. Elapsed time: 00:10:13s. Time for last 1,000,000: 1s. Last read position: chr11:10,799,212
INFO 2026-06-08 08:51:50 MarkDuplicates Tracking 742074 as yet unmatched pairs. 73505 records in RAM.
INFO 2026-06-08 08:51:52 MarkDuplicates Read 316,000,000 records. Elapsed time: 00:10:14s. Time for last 1,000,000: 1s. Last read position: chr11:16,789,147
INFO 2026-06-08 08:51:52 MarkDuplicates Tracking 739010 as yet unmatched pairs. 70441 records in RAM.
INFO 2026-06-08 08:51:53 MarkDuplicates Read 317,000,000 records. Elapsed time: 00:10:16s. Time for last 1,000,000: 1s. Last read position: chr11:20,048,953
INFO 2026-06-08 08:51:53 MarkDuplicates Tracking 737135 as yet unmatched pairs. 68563 records in RAM.
INFO 2026-06-08 08:51:55 MarkDuplicates Read 318,000,000 records. Elapsed time: 00:10:18s. Time for last 1,000,000: 1s. Last read position: chr11:34,124,322
INFO 2026-06-08 08:51:55 MarkDuplicates Tracking 734941 as yet unmatched pairs. 66364 records in RAM.
INFO 2026-06-08 08:51:56 MarkDuplicates Read 319,000,000 records. Elapsed time: 00:10:19s. Time for last 1,000,000: 1s. Last read position: chr11:46,372,161
INFO 2026-06-08 08:51:56 MarkDuplicates Tracking 732560 as yet unmatched pairs. 63981 records in RAM.
INFO 2026-06-08 08:51:58 MarkDuplicates Read 320,000,000 records. Elapsed time: 00:10:21s. Time for last 1,000,000: 1s. Last read position: chr11:47,424,100
INFO 2026-06-08 08:51:58 MarkDuplicates Tracking 730716 as yet unmatched pairs. 62127 records in RAM.
INFO 2026-06-08 08:52:00 MarkDuplicates Read 321,000,000 records. Elapsed time: 00:10:23s. Time for last 1,000,000: 1s. Last read position: chr11:57,602,034
INFO 2026-06-08 08:52:00 MarkDuplicates Tracking 728056 as yet unmatched pairs. 59466 records in RAM.
INFO 2026-06-08 08:52:02 MarkDuplicates Read 322,000,000 records. Elapsed time: 00:10:24s. Time for last 1,000,000: 1s. Last read position: chr11:60,899,150
INFO 2026-06-08 08:52:02 MarkDuplicates Tracking 726018 as yet unmatched pairs. 57427 records in RAM.
INFO 2026-06-08 08:52:04 MarkDuplicates Read 323,000,000 records. Elapsed time: 00:10:26s. Time for last 1,000,000: 1s. Last read position: chr11:61,964,996
INFO 2026-06-08 08:52:04 MarkDuplicates Tracking 724367 as yet unmatched pairs. 55772 records in RAM.
INFO 2026-06-08 08:52:05 MarkDuplicates Read 324,000,000 records. Elapsed time: 00:10:28s. Time for last 1,000,000: 1s. Last read position: chr11:62,525,579
INFO 2026-06-08 08:52:05 MarkDuplicates Tracking 721949 as yet unmatched pairs. 53352 records in RAM.
INFO 2026-06-08 08:52:07 MarkDuplicates Read 325,000,000 records. Elapsed time: 00:10:30s. Time for last 1,000,000: 1s. Last read position: chr11:62,572,604
INFO 2026-06-08 08:52:07 MarkDuplicates Tracking 719157 as yet unmatched pairs. 50556 records in RAM.
INFO 2026-06-08 08:52:09 MarkDuplicates Read 326,000,000 records. Elapsed time: 00:10:31s. Time for last 1,000,000: 1s. Last read position: chr11:62,803,905
INFO 2026-06-08 08:52:09 MarkDuplicates Tracking 716700 as yet unmatched pairs. 48099 records in RAM.
INFO 2026-06-08 08:52:10 MarkDuplicates Read 327,000,000 records. Elapsed time: 00:10:33s. Time for last 1,000,000: 1s. Last read position: chr11:64,231,955
INFO 2026-06-08 08:52:10 MarkDuplicates Tracking 714181 as yet unmatched pairs. 45575 records in RAM.
INFO 2026-06-08 08:52:12 MarkDuplicates Read 328,000,000 records. Elapsed time: 00:10:35s. Time for last 1,000,000: 1s. Last read position: chr11:64,789,885
INFO 2026-06-08 08:52:12 MarkDuplicates Tracking 711577 as yet unmatched pairs. 42971 records in RAM.
INFO 2026-06-08 08:52:14 MarkDuplicates Read 329,000,000 records. Elapsed time: 00:10:36s. Time for last 1,000,000: 1s. Last read position: chr11:65,287,736
INFO 2026-06-08 08:52:14 MarkDuplicates Tracking 709208 as yet unmatched pairs. 40600 records in RAM.
INFO 2026-06-08 08:52:15 MarkDuplicates Read 330,000,000 records. Elapsed time: 00:10:38s. Time for last 1,000,000: 1s. Last read position: chr11:65,655,733
INFO 2026-06-08 08:52:15 MarkDuplicates Tracking 706734 as yet unmatched pairs. 38124 records in RAM.
INFO 2026-06-08 08:52:17 MarkDuplicates Read 331,000,000 records. Elapsed time: 00:10:40s. Time for last 1,000,000: 1s. Last read position: chr11:65,964,073
INFO 2026-06-08 08:52:17 MarkDuplicates Tracking 703719 as yet unmatched pairs. 35109 records in RAM.
INFO 2026-06-08 08:52:19 MarkDuplicates Read 332,000,000 records. Elapsed time: 00:10:41s. Time for last 1,000,000: 1s. Last read position: chr11:66,643,733
INFO 2026-06-08 08:52:19 MarkDuplicates Tracking 701418 as yet unmatched pairs. 32808 records in RAM.
INFO 2026-06-08 08:52:20 MarkDuplicates Read 333,000,000 records. Elapsed time: 00:10:43s. Time for last 1,000,000: 1s. Last read position: chr11:67,464,669
INFO 2026-06-08 08:52:20 MarkDuplicates Tracking 698930 as yet unmatched pairs. 30319 records in RAM.
INFO 2026-06-08 08:52:22 MarkDuplicates Read 334,000,000 records. Elapsed time: 00:10:44s. Time for last 1,000,000: 1s. Last read position: chr11:68,784,815
INFO 2026-06-08 08:52:22 MarkDuplicates Tracking 696324 as yet unmatched pairs. 27711 records in RAM.
INFO 2026-06-08 08:52:23 MarkDuplicates Read 335,000,000 records. Elapsed time: 00:10:46s. Time for last 1,000,000: 1s. Last read position: chr11:69,699,374
INFO 2026-06-08 08:52:23 MarkDuplicates Tracking 696513 as yet unmatched pairs. 27898 records in RAM.
INFO 2026-06-08 08:52:25 MarkDuplicates Read 336,000,000 records. Elapsed time: 00:10:47s. Time for last 1,000,000: 1s. Last read position: chr11:72,013,178
INFO 2026-06-08 08:52:25 MarkDuplicates Tracking 691915 as yet unmatched pairs. 23300 records in RAM.
INFO 2026-06-08 08:52:26 MarkDuplicates Read 337,000,000 records. Elapsed time: 00:10:49s. Time for last 1,000,000: 1s. Last read position: chr11:73,873,325
INFO 2026-06-08 08:52:26 MarkDuplicates Tracking 689156 as yet unmatched pairs. 20539 records in RAM.
INFO 2026-06-08 08:52:28 MarkDuplicates Read 338,000,000 records. Elapsed time: 00:10:50s. Time for last 1,000,000: 1s. Last read position: chr11:76,796,499
INFO 2026-06-08 08:52:28 MarkDuplicates Tracking 686858 as yet unmatched pairs. 18240 records in RAM.
INFO 2026-06-08 08:52:29 MarkDuplicates Read 339,000,000 records. Elapsed time: 00:10:52s. Time for last 1,000,000: 1s. Last read position: chr11:92,550,445
INFO 2026-06-08 08:52:29 MarkDuplicates Tracking 684558 as yet unmatched pairs. 15939 records in RAM.
INFO 2026-06-08 08:52:31 MarkDuplicates Read 340,000,000 records. Elapsed time: 00:10:53s. Time for last 1,000,000: 1s. Last read position: chr11:102,227,503
INFO 2026-06-08 08:52:31 MarkDuplicates Tracking 684259 as yet unmatched pairs. 15629 records in RAM.
INFO 2026-06-08 08:52:33 MarkDuplicates Read 341,000,000 records. Elapsed time: 00:10:55s. Time for last 1,000,000: 2s. Last read position: chr11:112,228,627
INFO 2026-06-08 08:52:33 MarkDuplicates Tracking 680236 as yet unmatched pairs. 11602 records in RAM.
INFO 2026-06-08 08:52:34 MarkDuplicates Read 342,000,000 records. Elapsed time: 00:10:57s. Time for last 1,000,000: 1s. Last read position: chr11:118,406,967
INFO 2026-06-08 08:52:34 MarkDuplicates Tracking 679368 as yet unmatched pairs. 10732 records in RAM.
INFO 2026-06-08 08:52:36 MarkDuplicates Read 343,000,000 records. Elapsed time: 00:10:58s. Time for last 1,000,000: 1s. Last read position: chr11:119,012,186
INFO 2026-06-08 08:52:36 MarkDuplicates Tracking 675952 as yet unmatched pairs. 7308 records in RAM.
INFO 2026-06-08 08:52:37 MarkDuplicates Read 344,000,000 records. Elapsed time: 00:11:00s. Time for last 1,000,000: 1s. Last read position: chr11:120,475,369
INFO 2026-06-08 08:52:37 MarkDuplicates Tracking 673553 as yet unmatched pairs. 4908 records in RAM.
INFO 2026-06-08 08:52:39 MarkDuplicates Read 345,000,000 records. Elapsed time: 00:11:02s. Time for last 1,000,000: 1s. Last read position: chr11:126,355,823
INFO 2026-06-08 08:52:39 MarkDuplicates Tracking 671396 as yet unmatched pairs. 2749 records in RAM.
INFO 2026-06-08 08:52:41 MarkDuplicates Read 346,000,000 records. Elapsed time: 00:11:03s. Time for last 1,000,000: 1s. Last read position: chr11:134,220,636
INFO 2026-06-08 08:52:41 MarkDuplicates Tracking 669154 as yet unmatched pairs. 507 records in RAM.
INFO 2026-06-08 08:52:43 MarkDuplicates Read 347,000,000 records. Elapsed time: 00:11:06s. Time for last 1,000,000: 2s. Last read position: chr12:1,028,248
INFO 2026-06-08 08:52:43 MarkDuplicates Tracking 666828 as yet unmatched pairs. 81164 records in RAM.
INFO 2026-06-08 08:52:45 MarkDuplicates Read 348,000,000 records. Elapsed time: 00:11:08s. Time for last 1,000,000: 1s. Last read position: chr12:6,347,997
INFO 2026-06-08 08:52:45 MarkDuplicates Tracking 664728 as yet unmatched pairs. 79062 records in RAM.
INFO 2026-06-08 08:52:47 MarkDuplicates Read 349,000,000 records. Elapsed time: 00:11:10s. Time for last 1,000,000: 2s. Last read position: chr12:6,751,996
INFO 2026-06-08 08:52:47 MarkDuplicates Tracking 663386 as yet unmatched pairs. 77718 records in RAM.
INFO 2026-06-08 08:52:49 MarkDuplicates Read 350,000,000 records. Elapsed time: 00:11:12s. Time for last 1,000,000: 1s. Last read position: chr12:6,981,026
INFO 2026-06-08 08:52:49 MarkDuplicates Tracking 660016 as yet unmatched pairs. 74347 records in RAM.
INFO 2026-06-08 08:52:51 MarkDuplicates Read 351,000,000 records. Elapsed time: 00:11:13s. Time for last 1,000,000: 1s. Last read position: chr12:9,091,212
INFO 2026-06-08 08:52:51 MarkDuplicates Tracking 657919 as yet unmatched pairs. 72249 records in RAM.
INFO 2026-06-08 08:52:52 MarkDuplicates Read 352,000,000 records. Elapsed time: 00:11:15s. Time for last 1,000,000: 1s. Last read position: chr12:12,908,764
INFO 2026-06-08 08:52:52 MarkDuplicates Tracking 657218 as yet unmatched pairs. 71543 records in RAM.
INFO 2026-06-08 08:52:54 MarkDuplicates Read 353,000,000 records. Elapsed time: 00:11:16s. Time for last 1,000,000: 1s. Last read position: chr12:21,642,075
INFO 2026-06-08 08:52:54 MarkDuplicates Tracking 655270 as yet unmatched pairs. 69595 records in RAM.
INFO 2026-06-08 08:52:55 MarkDuplicates Read 354,000,000 records. Elapsed time: 00:11:18s. Time for last 1,000,000: 1s. Last read position: chr12:31,984,542
INFO 2026-06-08 08:52:55 MarkDuplicates Tracking 652255 as yet unmatched pairs. 66574 records in RAM.
INFO 2026-06-08 08:52:57 MarkDuplicates Read 355,000,000 records. Elapsed time: 00:11:20s. Time for last 1,000,000: 1s. Last read position: chr12:47,795,219
INFO 2026-06-08 08:52:57 MarkDuplicates Tracking 649203 as yet unmatched pairs. 63509 records in RAM.
INFO 2026-06-08 08:52:59 MarkDuplicates Read 356,000,000 records. Elapsed time: 00:11:21s. Time for last 1,000,000: 1s. Last read position: chr12:49,049,985
INFO 2026-06-08 08:52:59 MarkDuplicates Tracking 647064 as yet unmatched pairs. 61369 records in RAM.
INFO 2026-06-08 08:53:00 MarkDuplicates Read 357,000,000 records. Elapsed time: 00:11:23s. Time for last 1,000,000: 1s. Last read position: chr12:49,129,596
INFO 2026-06-08 08:53:00 MarkDuplicates Tracking 647869 as yet unmatched pairs. 62174 records in RAM.
INFO 2026-06-08 08:53:02 MarkDuplicates Read 358,000,000 records. Elapsed time: 00:11:24s. Time for last 1,000,000: 1s. Last read position: chr12:49,758,452
INFO 2026-06-08 08:53:02 MarkDuplicates Tracking 644429 as yet unmatched pairs. 58734 records in RAM.
INFO 2026-06-08 08:53:03 MarkDuplicates Read 359,000,000 records. Elapsed time: 00:11:26s. Time for last 1,000,000: 1s. Last read position: chr12:52,488,330
INFO 2026-06-08 08:53:03 MarkDuplicates Tracking 641270 as yet unmatched pairs. 55571 records in RAM.
INFO 2026-06-08 08:53:05 MarkDuplicates Read 360,000,000 records. Elapsed time: 00:11:27s. Time for last 1,000,000: 1s. Last read position: chr12:52,904,692
INFO 2026-06-08 08:53:05 MarkDuplicates Tracking 643599 as yet unmatched pairs. 57900 records in RAM.
INFO 2026-06-08 08:53:06 MarkDuplicates Read 361,000,000 records. Elapsed time: 00:11:29s. Time for last 1,000,000: 1s. Last read position: chr12:52,949,473
INFO 2026-06-08 08:53:06 MarkDuplicates Tracking 640694 as yet unmatched pairs. 54995 records in RAM.
INFO 2026-06-08 08:53:08 MarkDuplicates Read 362,000,000 records. Elapsed time: 00:11:31s. Time for last 1,000,000: 1s. Last read position: chr12:53,269,148
INFO 2026-06-08 08:53:08 MarkDuplicates Tracking 634520 as yet unmatched pairs. 48818 records in RAM.
INFO 2026-06-08 08:53:10 MarkDuplicates Read 363,000,000 records. Elapsed time: 00:11:32s. Time for last 1,000,000: 1s. Last read position: chr12:54,280,758
INFO 2026-06-08 08:53:10 MarkDuplicates Tracking 632628 as yet unmatched pairs. 46925 records in RAM.
INFO 2026-06-08 08:53:11 MarkDuplicates Read 364,000,000 records. Elapsed time: 00:11:34s. Time for last 1,000,000: 1s. Last read position: chr12:54,396,355
INFO 2026-06-08 08:53:11 MarkDuplicates Tracking 630798 as yet unmatched pairs. 45095 records in RAM.
INFO 2026-06-08 08:53:13 MarkDuplicates Read 365,000,000 records. Elapsed time: 00:11:36s. Time for last 1,000,000: 2s. Last read position: chr12:56,109,266
INFO 2026-06-08 08:53:13 MarkDuplicates Tracking 628729 as yet unmatched pairs. 43026 records in RAM.
INFO 2026-06-08 08:53:15 MarkDuplicates Read 366,000,000 records. Elapsed time: 00:11:38s. Time for last 1,000,000: 1s. Last read position: chr12:56,355,284
INFO 2026-06-08 08:53:15 MarkDuplicates Tracking 626125 as yet unmatched pairs. 40420 records in RAM.
INFO 2026-06-08 08:53:17 MarkDuplicates Read 367,000,000 records. Elapsed time: 00:11:39s. Time for last 1,000,000: 1s. Last read position: chr12:56,716,925
INFO 2026-06-08 08:53:17 MarkDuplicates Tracking 624292 as yet unmatched pairs. 38585 records in RAM.
INFO 2026-06-08 08:53:19 MarkDuplicates Read 368,000,000 records. Elapsed time: 00:11:42s. Time for last 1,000,000: 2s. Last read position: chr12:57,201,116
INFO 2026-06-08 08:53:19 MarkDuplicates Tracking 621638 as yet unmatched pairs. 35931 records in RAM.
INFO 2026-06-08 08:53:21 MarkDuplicates Read 369,000,000 records. Elapsed time: 00:11:44s. Time for last 1,000,000: 1s. Last read position: chr12:57,750,937
INFO 2026-06-08 08:53:21 MarkDuplicates Tracking 619759 as yet unmatched pairs. 34052 records in RAM.
INFO 2026-06-08 08:53:22 MarkDuplicates Read 370,000,000 records. Elapsed time: 00:11:45s. Time for last 1,000,000: 1s. Last read position: chr12:68,746,493
INFO 2026-06-08 08:53:22 MarkDuplicates Tracking 617310 as yet unmatched pairs. 31603 records in RAM.
INFO 2026-06-08 08:53:24 MarkDuplicates Read 371,000,000 records. Elapsed time: 00:11:46s. Time for last 1,000,000: 1s. Last read position: chr12:76,030,675
INFO 2026-06-08 08:53:24 MarkDuplicates Tracking 617474 as yet unmatched pairs. 31761 records in RAM.
INFO 2026-06-08 08:53:25 MarkDuplicates Read 372,000,000 records. Elapsed time: 00:11:48s. Time for last 1,000,000: 1s. Last read position: chr12:79,775,922
INFO 2026-06-08 08:53:25 MarkDuplicates Tracking 612946 as yet unmatched pairs. 27231 records in RAM.
INFO 2026-06-08 08:53:27 MarkDuplicates Read 373,000,000 records. Elapsed time: 00:11:49s. Time for last 1,000,000: 1s. Last read position: chr12:95,266,414
INFO 2026-06-08 08:53:27 MarkDuplicates Tracking 610898 as yet unmatched pairs. 25181 records in RAM.
INFO 2026-06-08 08:53:28 MarkDuplicates Read 374,000,000 records. Elapsed time: 00:11:51s. Time for last 1,000,000: 1s. Last read position: chr12:103,796,933
INFO 2026-06-08 08:53:28 MarkDuplicates Tracking 608801 as yet unmatched pairs. 23084 records in RAM.
INFO 2026-06-08 08:53:30 MarkDuplicates Read 375,000,000 records. Elapsed time: 00:11:53s. Time for last 1,000,000: 1s. Last read position: chr12:107,692,832
INFO 2026-06-08 08:53:30 MarkDuplicates Tracking 606776 as yet unmatched pairs. 21059 records in RAM.
INFO 2026-06-08 08:53:31 MarkDuplicates Read 376,000,000 records. Elapsed time: 00:11:54s. Time for last 1,000,000: 1s. Last read position: chr12:110,493,127
INFO 2026-06-08 08:53:31 MarkDuplicates Tracking 604919 as yet unmatched pairs. 19194 records in RAM.
INFO 2026-06-08 08:53:33 MarkDuplicates Read 377,000,000 records. Elapsed time: 00:11:56s. Time for last 1,000,000: 1s. Last read position: chr12:112,502,141
INFO 2026-06-08 08:53:33 MarkDuplicates Tracking 602600 as yet unmatched pairs. 16874 records in RAM.
INFO 2026-06-08 08:53:35 MarkDuplicates Read 378,000,000 records. Elapsed time: 00:11:57s. Time for last 1,000,000: 1s. Last read position: chr12:118,246,145
INFO 2026-06-08 08:53:35 MarkDuplicates Tracking 599905 as yet unmatched pairs. 14178 records in RAM.
INFO 2026-06-08 08:53:36 MarkDuplicates Read 379,000,000 records. Elapsed time: 00:11:59s. Time for last 1,000,000: 1s. Last read position: chr12:120,222,734
INFO 2026-06-08 08:53:36 MarkDuplicates Tracking 598031 as yet unmatched pairs. 12303 records in RAM.
INFO 2026-06-08 08:53:37 MarkDuplicates Read 380,000,000 records. Elapsed time: 00:12:00s. Time for last 1,000,000: 1s. Last read position: chr12:122,130,043
INFO 2026-06-08 08:53:37 MarkDuplicates Tracking 595200 as yet unmatched pairs. 9465 records in RAM.
INFO 2026-06-08 08:53:39 MarkDuplicates Read 381,000,000 records. Elapsed time: 00:12:02s. Time for last 1,000,000: 1s. Last read position: chr12:123,436,270
INFO 2026-06-08 08:53:39 MarkDuplicates Tracking 592765 as yet unmatched pairs. 7026 records in RAM.
INFO 2026-06-08 08:53:41 MarkDuplicates Read 382,000,000 records. Elapsed time: 00:12:04s. Time for last 1,000,000: 1s. Last read position: chr12:124,810,186
INFO 2026-06-08 08:53:41 MarkDuplicates Tracking 590709 as yet unmatched pairs. 4957 records in RAM.
INFO 2026-06-08 08:53:43 MarkDuplicates Read 383,000,000 records. Elapsed time: 00:12:05s. Time for last 1,000,000: 1s. Last read position: chr12:132,104,265
INFO 2026-06-08 08:53:43 MarkDuplicates Tracking 588177 as yet unmatched pairs. 2418 records in RAM.
INFO 2026-06-08 08:53:44 MarkDuplicates Read 384,000,000 records. Elapsed time: 00:12:07s. Time for last 1,000,000: 1s. Last read position: chr13:19,838,734
INFO 2026-06-08 08:53:44 MarkDuplicates Tracking 585554 as yet unmatched pairs. 17224 records in RAM.
INFO 2026-06-08 08:53:46 MarkDuplicates Read 385,000,000 records. Elapsed time: 00:12:09s. Time for last 1,000,000: 1s. Last read position: chr13:27,095,817
INFO 2026-06-08 08:53:46 MarkDuplicates Tracking 583441 as yet unmatched pairs. 15104 records in RAM.
INFO 2026-06-08 08:53:48 MarkDuplicates Read 386,000,000 records. Elapsed time: 00:12:11s. Time for last 1,000,000: 1s. Last read position: chr13:37,582,504
INFO 2026-06-08 08:53:48 MarkDuplicates Tracking 581617 as yet unmatched pairs. 13276 records in RAM.
INFO 2026-06-08 08:53:50 MarkDuplicates Read 387,000,000 records. Elapsed time: 00:12:13s. Time for last 1,000,000: 1s. Last read position: chr13:45,401,133
INFO 2026-06-08 08:53:50 MarkDuplicates Tracking 579123 as yet unmatched pairs. 10781 records in RAM.
INFO 2026-06-08 08:53:52 MarkDuplicates Read 388,000,000 records. Elapsed time: 00:12:14s. Time for last 1,000,000: 1s. Last read position: chr13:65,787,981
INFO 2026-06-08 08:53:52 MarkDuplicates Tracking 577115 as yet unmatched pairs. 8772 records in RAM.
INFO 2026-06-08 08:53:53 MarkDuplicates Read 389,000,000 records. Elapsed time: 00:12:16s. Time for last 1,000,000: 1s. Last read position: chr13:97,976,658
INFO 2026-06-08 08:53:53 MarkDuplicates Tracking 575064 as yet unmatched pairs. 6719 records in RAM.
INFO 2026-06-08 08:53:55 MarkDuplicates Read 390,000,000 records. Elapsed time: 00:12:18s. Time for last 1,000,000: 1s. Last read position: chr13:110,164,944
INFO 2026-06-08 08:53:55 MarkDuplicates Tracking 572748 as yet unmatched pairs. 4397 records in RAM.
INFO 2026-06-08 08:53:57 MarkDuplicates Read 391,000,000 records. Elapsed time: 00:12:19s. Time for last 1,000,000: 1s. Last read position: chr13:111,243,918
INFO 2026-06-08 08:53:57 MarkDuplicates Tracking 570124 as yet unmatched pairs. 1772 records in RAM.
INFO 2026-06-08 08:53:59 MarkDuplicates Read 392,000,000 records. Elapsed time: 00:12:21s. Time for last 1,000,000: 1s. Last read position: chr14:20,457,418
INFO 2026-06-08 08:53:59 MarkDuplicates Tracking 567742 as yet unmatched pairs. 44261 records in RAM.
INFO 2026-06-08 08:54:00 MarkDuplicates Read 393,000,000 records. Elapsed time: 00:12:23s. Time for last 1,000,000: 1s. Last read position: chr14:22,830,234
INFO 2026-06-08 08:54:00 MarkDuplicates Tracking 566749 as yet unmatched pairs. 43266 records in RAM.
INFO 2026-06-08 08:54:02 MarkDuplicates Read 394,000,000 records. Elapsed time: 00:12:24s. Time for last 1,000,000: 1s. Last read position: chr14:23,097,695
INFO 2026-06-08 08:54:02 MarkDuplicates Tracking 563250 as yet unmatched pairs. 39767 records in RAM.
INFO 2026-06-08 08:54:03 MarkDuplicates Read 395,000,000 records. Elapsed time: 00:12:26s. Time for last 1,000,000: 1s. Last read position: chr14:24,217,207
INFO 2026-06-08 08:54:03 MarkDuplicates Tracking 561049 as yet unmatched pairs. 37566 records in RAM.
INFO 2026-06-08 08:54:05 MarkDuplicates Read 396,000,000 records. Elapsed time: 00:12:28s. Time for last 1,000,000: 1s. Last read position: chr14:34,435,137
INFO 2026-06-08 08:54:05 MarkDuplicates Tracking 558604 as yet unmatched pairs. 35120 records in RAM.
INFO 2026-06-08 08:54:07 MarkDuplicates Read 397,000,000 records. Elapsed time: 00:12:29s. Time for last 1,000,000: 1s. Last read position: chr14:49,621,683
INFO 2026-06-08 08:54:07 MarkDuplicates Tracking 556831 as yet unmatched pairs. 33342 records in RAM.
INFO 2026-06-08 08:54:08 MarkDuplicates Read 398,000,000 records. Elapsed time: 00:12:31s. Time for last 1,000,000: 1s. Last read position: chr14:52,730,430
INFO 2026-06-08 08:54:08 MarkDuplicates Tracking 554687 as yet unmatched pairs. 31191 records in RAM.
INFO 2026-06-08 08:54:10 MarkDuplicates Read 399,000,000 records. Elapsed time: 00:12:32s. Time for last 1,000,000: 1s. Last read position: chr14:58,488,745
INFO 2026-06-08 08:54:10 MarkDuplicates Tracking 552178 as yet unmatched pairs. 28670 records in RAM.
INFO 2026-06-08 08:54:11 MarkDuplicates Read 400,000,000 records. Elapsed time: 00:12:34s. Time for last 1,000,000: 1s. Last read position: chr14:64,541,564
INFO 2026-06-08 08:54:11 MarkDuplicates Tracking 549968 as yet unmatched pairs. 26455 records in RAM.
INFO 2026-06-08 08:54:13 MarkDuplicates Read 401,000,000 records. Elapsed time: 00:12:36s. Time for last 1,000,000: 1s. Last read position: chr14:68,884,193
INFO 2026-06-08 08:54:13 MarkDuplicates Tracking 548780 as yet unmatched pairs. 25266 records in RAM.
INFO 2026-06-08 08:54:15 MarkDuplicates Read 402,000,000 records. Elapsed time: 00:12:37s. Time for last 1,000,000: 1s. Last read position: chr14:73,276,870
INFO 2026-06-08 08:54:15 MarkDuplicates Tracking 545694 as yet unmatched pairs. 22177 records in RAM.
INFO 2026-06-08 08:54:16 MarkDuplicates Read 403,000,000 records. Elapsed time: 00:12:39s. Time for last 1,000,000: 1s. Last read position: chr14:75,147,724
INFO 2026-06-08 08:54:16 MarkDuplicates Tracking 543726 as yet unmatched pairs. 20209 records in RAM.
INFO 2026-06-08 08:54:18 MarkDuplicates Read 404,000,000 records. Elapsed time: 00:12:40s. Time for last 1,000,000: 1s. Last read position: chr14:90,403,875
INFO 2026-06-08 08:54:18 MarkDuplicates Tracking 541694 as yet unmatched pairs. 18173 records in RAM.
INFO 2026-06-08 08:54:20 MarkDuplicates Read 405,000,000 records. Elapsed time: 00:12:42s. Time for last 1,000,000: 1s. Last read position: chr14:95,196,542
INFO 2026-06-08 08:54:20 MarkDuplicates Tracking 538623 as yet unmatched pairs. 15100 records in RAM.
INFO 2026-06-08 08:54:22 MarkDuplicates Read 406,000,000 records. Elapsed time: 00:12:44s. Time for last 1,000,000: 1s. Last read position: chr14:101,995,185
INFO 2026-06-08 08:54:22 MarkDuplicates Tracking 536639 as yet unmatched pairs. 13108 records in RAM.
INFO 2026-06-08 08:54:23 MarkDuplicates Read 407,000,000 records. Elapsed time: 00:12:46s. Time for last 1,000,000: 1s. Last read position: chr14:102,086,001
INFO 2026-06-08 08:54:23 MarkDuplicates Tracking 534333 as yet unmatched pairs. 10802 records in RAM.
INFO 2026-06-08 08:54:25 MarkDuplicates Read 408,000,000 records. Elapsed time: 00:12:47s. Time for last 1,000,000: 1s. Last read position: chr14:104,703,410
INFO 2026-06-08 08:54:25 MarkDuplicates Tracking 531952 as yet unmatched pairs. 8418 records in RAM.
INFO 2026-06-08 08:54:26 MarkDuplicates Read 409,000,000 records. Elapsed time: 00:12:49s. Time for last 1,000,000: 1s. Last read position: chr14:104,946,412
INFO 2026-06-08 08:54:26 MarkDuplicates Tracking 530118 as yet unmatched pairs. 6584 records in RAM.
INFO 2026-06-08 08:54:28 MarkDuplicates Read 410,000,000 records. Elapsed time: 00:12:50s. Time for last 1,000,000: 1s. Last read position: chr14:105,625,772
INFO 2026-06-08 08:54:28 MarkDuplicates Tracking 527290 as yet unmatched pairs. 3750 records in RAM.
INFO 2026-06-08 08:54:29 MarkDuplicates Read 411,000,000 records. Elapsed time: 00:12:52s. Time for last 1,000,000: 1s. Last read position: chr14:105,741,895
INFO 2026-06-08 08:54:29 MarkDuplicates Tracking 529479 as yet unmatched pairs. 5938 records in RAM.
INFO 2026-06-08 08:54:31 MarkDuplicates Read 412,000,000 records. Elapsed time: 00:12:53s. Time for last 1,000,000: 1s. Last read position: chr14:105,771,223
INFO 2026-06-08 08:54:31 MarkDuplicates Tracking 524694 as yet unmatched pairs. 1149 records in RAM.
INFO 2026-06-08 08:54:33 MarkDuplicates Read 413,000,000 records. Elapsed time: 00:12:56s. Time for last 1,000,000: 2s. Last read position: chr15:28,632,723
INFO 2026-06-08 08:54:33 MarkDuplicates Tracking 522185 as yet unmatched pairs. 39305 records in RAM.
INFO 2026-06-08 08:54:35 MarkDuplicates Read 414,000,000 records. Elapsed time: 00:12:58s. Time for last 1,000,000: 2s. Last read position: chr15:33,066,721
INFO 2026-06-08 08:54:35 MarkDuplicates Tracking 520287 as yet unmatched pairs. 37407 records in RAM.
INFO 2026-06-08 08:54:37 MarkDuplicates Read 415,000,000 records. Elapsed time: 00:12:59s. Time for last 1,000,000: 1s. Last read position: chr15:40,272,478
INFO 2026-06-08 08:54:37 MarkDuplicates Tracking 518183 as yet unmatched pairs. 35303 records in RAM.
INFO 2026-06-08 08:54:38 MarkDuplicates Read 416,000,000 records. Elapsed time: 00:13:01s. Time for last 1,000,000: 1s. Last read position: chr15:41,669,362
INFO 2026-06-08 08:54:38 MarkDuplicates Tracking 516012 as yet unmatched pairs. 33126 records in RAM.
INFO 2026-06-08 08:54:40 MarkDuplicates Read 417,000,000 records. Elapsed time: 00:13:03s. Time for last 1,000,000: 1s. Last read position: chr15:43,421,098
INFO 2026-06-08 08:54:40 MarkDuplicates Tracking 513605 as yet unmatched pairs. 30718 records in RAM.
INFO 2026-06-08 08:54:42 MarkDuplicates Read 418,000,000 records. Elapsed time: 00:13:04s. Time for last 1,000,000: 1s. Last read position: chr15:44,486,595
INFO 2026-06-08 08:54:42 MarkDuplicates Tracking 511569 as yet unmatched pairs. 28682 records in RAM.
INFO 2026-06-08 08:54:43 MarkDuplicates Read 419,000,000 records. Elapsed time: 00:13:06s. Time for last 1,000,000: 1s. Last read position: chr15:50,609,680
INFO 2026-06-08 08:54:43 MarkDuplicates Tracking 509337 as yet unmatched pairs. 26450 records in RAM.
INFO 2026-06-08 08:54:45 MarkDuplicates Read 420,000,000 records. Elapsed time: 00:13:07s. Time for last 1,000,000: 1s. Last read position: chr15:58,184,348
INFO 2026-06-08 08:54:45 MarkDuplicates Tracking 507186 as yet unmatched pairs. 24299 records in RAM.
INFO 2026-06-08 08:54:46 MarkDuplicates Read 421,000,000 records. Elapsed time: 00:13:09s. Time for last 1,000,000: 1s. Last read position: chr15:63,057,002
INFO 2026-06-08 08:54:46 MarkDuplicates Tracking 505566 as yet unmatched pairs. 22677 records in RAM.
INFO 2026-06-08 08:54:48 MarkDuplicates Read 422,000,000 records. Elapsed time: 00:13:10s. Time for last 1,000,000: 1s. Last read position: chr15:65,551,680
INFO 2026-06-08 08:54:48 MarkDuplicates Tracking 502949 as yet unmatched pairs. 20059 records in RAM.
INFO 2026-06-08 08:54:49 MarkDuplicates Read 423,000,000 records. Elapsed time: 00:13:12s. Time for last 1,000,000: 1s. Last read position: chr15:69,436,642
INFO 2026-06-08 08:54:49 MarkDuplicates Tracking 500569 as yet unmatched pairs. 17679 records in RAM.
INFO 2026-06-08 08:54:51 MarkDuplicates Read 424,000,000 records. Elapsed time: 00:13:13s. Time for last 1,000,000: 1s. Last read position: chr15:72,208,766
INFO 2026-06-08 08:54:51 MarkDuplicates Tracking 501739 as yet unmatched pairs. 18849 records in RAM.
INFO 2026-06-08 08:54:52 MarkDuplicates Read 425,000,000 records. Elapsed time: 00:13:15s. Time for last 1,000,000: 1s. Last read position: chr15:74,035,316
INFO 2026-06-08 08:54:52 MarkDuplicates Tracking 496778 as yet unmatched pairs. 13883 records in RAM.
INFO 2026-06-08 08:54:54 MarkDuplicates Read 426,000,000 records. Elapsed time: 00:13:16s. Time for last 1,000,000: 1s. Last read position: chr15:75,677,030
INFO 2026-06-08 08:54:54 MarkDuplicates Tracking 493545 as yet unmatched pairs. 10650 records in RAM.
INFO 2026-06-08 08:54:55 MarkDuplicates Read 427,000,000 records. Elapsed time: 00:13:18s. Time for last 1,000,000: 1s. Last read position: chr15:80,922,079
INFO 2026-06-08 08:54:55 MarkDuplicates Tracking 491431 as yet unmatched pairs. 8509 records in RAM.
INFO 2026-06-08 08:54:57 MarkDuplicates Read 428,000,000 records. Elapsed time: 00:13:20s. Time for last 1,000,000: 1s. Last read position: chr15:85,575,237
INFO 2026-06-08 08:54:57 MarkDuplicates Tracking 489332 as yet unmatched pairs. 6409 records in RAM.
INFO 2026-06-08 08:54:58 MarkDuplicates Read 429,000,000 records. Elapsed time: 00:13:21s. Time for last 1,000,000: 1s. Last read position: chr15:90,084,816
INFO 2026-06-08 08:54:58 MarkDuplicates Tracking 489235 as yet unmatched pairs. 6311 records in RAM.
INFO 2026-06-08 08:55:00 MarkDuplicates Read 430,000,000 records. Elapsed time: 00:13:22s. Time for last 1,000,000: 1s. Last read position: chr15:92,286,135
INFO 2026-06-08 08:55:00 MarkDuplicates Tracking 484806 as yet unmatched pairs. 1881 records in RAM.
INFO 2026-06-08 08:55:02 MarkDuplicates Read 431,000,000 records. Elapsed time: 00:13:25s. Time for last 1,000,000: 2s. Last read position: chr16:58,502
INFO 2026-06-08 08:55:02 MarkDuplicates Tracking 482913 as yet unmatched pairs. 73140 records in RAM.
INFO 2026-06-08 08:55:03 MarkDuplicates Read 432,000,000 records. Elapsed time: 00:13:26s. Time for last 1,000,000: 1s. Last read position: chr16:672,971
INFO 2026-06-08 08:55:03 MarkDuplicates Tracking 480966 as yet unmatched pairs. 71193 records in RAM.
INFO 2026-06-08 08:55:05 MarkDuplicates Read 433,000,000 records. Elapsed time: 00:13:28s. Time for last 1,000,000: 1s. Last read position: chr16:1,614,940
INFO 2026-06-08 08:55:05 MarkDuplicates Tracking 477524 as yet unmatched pairs. 67751 records in RAM.
INFO 2026-06-08 08:55:07 MarkDuplicates Read 434,000,000 records. Elapsed time: 00:13:29s. Time for last 1,000,000: 1s. Last read position: chr16:2,090,979
INFO 2026-06-08 08:55:07 MarkDuplicates Tracking 475101 as yet unmatched pairs. 65328 records in RAM.
INFO 2026-06-08 08:55:08 MarkDuplicates Read 435,000,000 records. Elapsed time: 00:13:31s. Time for last 1,000,000: 1s. Last read position: chr16:2,581,318
INFO 2026-06-08 08:55:08 MarkDuplicates Tracking 472072 as yet unmatched pairs. 62299 records in RAM.
INFO 2026-06-08 08:55:09 MarkDuplicates Read 436,000,000 records. Elapsed time: 00:13:32s. Time for last 1,000,000: 1s. Last read position: chr16:2,858,057
INFO 2026-06-08 08:55:09 MarkDuplicates Tracking 469898 as yet unmatched pairs. 60125 records in RAM.
INFO 2026-06-08 08:55:11 MarkDuplicates Read 437,000,000 records. Elapsed time: 00:13:34s. Time for last 1,000,000: 1s. Last read position: chr16:3,770,808
INFO 2026-06-08 08:55:11 MarkDuplicates Tracking 467553 as yet unmatched pairs. 57780 records in RAM.
INFO 2026-06-08 08:55:13 MarkDuplicates Read 438,000,000 records. Elapsed time: 00:13:36s. Time for last 1,000,000: 2s. Last read position: chr16:8,896,997
INFO 2026-06-08 08:55:13 MarkDuplicates Tracking 465210 as yet unmatched pairs. 55437 records in RAM.
INFO 2026-06-08 08:55:15 MarkDuplicates Read 439,000,000 records. Elapsed time: 00:13:38s. Time for last 1,000,000: 1s. Last read position: chr16:14,584,420
INFO 2026-06-08 08:55:15 MarkDuplicates Tracking 462985 as yet unmatched pairs. 53211 records in RAM.
INFO 2026-06-08 08:55:16 MarkDuplicates Read 440,000,000 records. Elapsed time: 00:13:39s. Time for last 1,000,000: 1s. Last read position: chr16:15,133,403
INFO 2026-06-08 08:55:16 MarkDuplicates Tracking 461952 as yet unmatched pairs. 52178 records in RAM.
INFO 2026-06-08 08:55:18 MarkDuplicates Read 441,000,000 records. Elapsed time: 00:13:40s. Time for last 1,000,000: 1s. Last read position: chr16:16,252,453
INFO 2026-06-08 08:55:18 MarkDuplicates Tracking 459494 as yet unmatched pairs. 49716 records in RAM.
INFO 2026-06-08 08:55:19 MarkDuplicates Read 442,000,000 records. Elapsed time: 00:13:42s. Time for last 1,000,000: 1s. Last read position: chr16:18,318,108
INFO 2026-06-08 08:55:19 MarkDuplicates Tracking 458961 as yet unmatched pairs. 49183 records in RAM.
INFO 2026-06-08 08:55:20 MarkDuplicates Read 443,000,000 records. Elapsed time: 00:13:43s. Time for last 1,000,000: 1s. Last read position: chr16:18,523,842
INFO 2026-06-08 08:55:20 MarkDuplicates Tracking 458165 as yet unmatched pairs. 48387 records in RAM.
INFO 2026-06-08 08:55:22 MarkDuplicates Read 444,000,000 records. Elapsed time: 00:13:44s. Time for last 1,000,000: 1s. Last read position: chr16:21,404,600
INFO 2026-06-08 08:55:22 MarkDuplicates Tracking 456106 as yet unmatched pairs. 46328 records in RAM.
INFO 2026-06-08 08:55:23 MarkDuplicates Read 445,000,000 records. Elapsed time: 00:13:46s. Time for last 1,000,000: 1s. Last read position: chr16:22,483,035
INFO 2026-06-08 08:55:23 MarkDuplicates Tracking 454944 as yet unmatched pairs. 45159 records in RAM.
INFO 2026-06-08 08:55:24 MarkDuplicates Read 446,000,000 records. Elapsed time: 00:13:47s. Time for last 1,000,000: 1s. Last read position: chr16:25,788,866
INFO 2026-06-08 08:55:24 MarkDuplicates Tracking 453340 as yet unmatched pairs. 43555 records in RAM.
INFO 2026-06-08 08:55:26 MarkDuplicates Read 447,000,000 records. Elapsed time: 00:13:48s. Time for last 1,000,000: 1s. Last read position: chr16:28,732,118
INFO 2026-06-08 08:55:26 MarkDuplicates Tracking 451506 as yet unmatched pairs. 41720 records in RAM.
INFO 2026-06-08 08:55:27 MarkDuplicates Read 448,000,000 records. Elapsed time: 00:13:50s. Time for last 1,000,000: 1s. Last read position: chr16:29,454,254
INFO 2026-06-08 08:55:27 MarkDuplicates Tracking 450128 as yet unmatched pairs. 40337 records in RAM.
INFO 2026-06-08 08:55:29 MarkDuplicates Read 449,000,000 records. Elapsed time: 00:13:51s. Time for last 1,000,000: 1s. Last read position: chr16:29,860,647
INFO 2026-06-08 08:55:29 MarkDuplicates Tracking 447869 as yet unmatched pairs. 38077 records in RAM.
INFO 2026-06-08 08:55:30 MarkDuplicates Read 450,000,000 records. Elapsed time: 00:13:53s. Time for last 1,000,000: 1s. Last read position: chr16:30,195,003
INFO 2026-06-08 08:55:30 MarkDuplicates Tracking 445296 as yet unmatched pairs. 35504 records in RAM.
INFO 2026-06-08 08:55:31 MarkDuplicates Read 451,000,000 records. Elapsed time: 00:13:54s. Time for last 1,000,000: 1s. Last read position: chr16:30,720,926
INFO 2026-06-08 08:55:31 MarkDuplicates Tracking 443854 as yet unmatched pairs. 34062 records in RAM.
INFO 2026-06-08 08:55:33 MarkDuplicates Read 452,000,000 records. Elapsed time: 00:13:56s. Time for last 1,000,000: 1s. Last read position: chr16:31,182,544
INFO 2026-06-08 08:55:33 MarkDuplicates Tracking 442367 as yet unmatched pairs. 32564 records in RAM.
INFO 2026-06-08 08:55:35 MarkDuplicates Read 453,000,000 records. Elapsed time: 00:13:57s. Time for last 1,000,000: 1s. Last read position: chr16:46,897,689
INFO 2026-06-08 08:55:35 MarkDuplicates Tracking 438866 as yet unmatched pairs. 29062 records in RAM.
INFO 2026-06-08 08:55:36 MarkDuplicates Read 454,000,000 records. Elapsed time: 00:13:59s. Time for last 1,000,000: 1s. Last read position: chr16:53,933,984
INFO 2026-06-08 08:55:36 MarkDuplicates Tracking 436753 as yet unmatched pairs. 26946 records in RAM.
INFO 2026-06-08 08:55:38 MarkDuplicates Read 455,000,000 records. Elapsed time: 00:14:00s. Time for last 1,000,000: 1s. Last read position: chr16:57,061,669
INFO 2026-06-08 08:55:38 MarkDuplicates Tracking 434435 as yet unmatched pairs. 24628 records in RAM.
INFO 2026-06-08 08:55:39 MarkDuplicates Read 456,000,000 records. Elapsed time: 00:14:02s. Time for last 1,000,000: 1s. Last read position: chr16:58,555,206
INFO 2026-06-08 08:55:39 MarkDuplicates Tracking 432112 as yet unmatched pairs. 22305 records in RAM.
INFO 2026-06-08 08:55:41 MarkDuplicates Read 457,000,000 records. Elapsed time: 00:14:04s. Time for last 1,000,000: 1s. Last read position: chr16:67,542,621
INFO 2026-06-08 08:55:41 MarkDuplicates Tracking 429948 as yet unmatched pairs. 20141 records in RAM.
INFO 2026-06-08 08:55:43 MarkDuplicates Read 458,000,000 records. Elapsed time: 00:14:05s. Time for last 1,000,000: 1s. Last read position: chr16:68,801,717
INFO 2026-06-08 08:55:43 MarkDuplicates Tracking 427516 as yet unmatched pairs. 17709 records in RAM.
INFO 2026-06-08 08:55:45 MarkDuplicates Read 459,000,000 records. Elapsed time: 00:14:08s. Time for last 1,000,000: 2s. Last read position: chr16:70,042,930
INFO 2026-06-08 08:55:45 MarkDuplicates Tracking 425139 as yet unmatched pairs. 15329 records in RAM.
INFO 2026-06-08 08:55:47 MarkDuplicates Read 460,000,000 records. Elapsed time: 00:14:09s. Time for last 1,000,000: 1s. Last read position: chr16:71,649,253
INFO 2026-06-08 08:55:47 MarkDuplicates Tracking 422876 as yet unmatched pairs. 13065 records in RAM.
INFO 2026-06-08 08:55:48 MarkDuplicates Read 461,000,000 records. Elapsed time: 00:14:11s. Time for last 1,000,000: 1s. Last read position: chr16:75,305,087
INFO 2026-06-08 08:55:48 MarkDuplicates Tracking 420536 as yet unmatched pairs. 10724 records in RAM.
INFO 2026-06-08 08:55:50 MarkDuplicates Read 462,000,000 records. Elapsed time: 00:14:12s. Time for last 1,000,000: 1s. Last read position: chr16:84,873,010
INFO 2026-06-08 08:55:50 MarkDuplicates Tracking 418147 as yet unmatched pairs. 8331 records in RAM.
INFO 2026-06-08 08:55:51 MarkDuplicates Read 463,000,000 records. Elapsed time: 00:14:14s. Time for last 1,000,000: 1s. Last read position: chr16:87,869,249
INFO 2026-06-08 08:55:51 MarkDuplicates Tracking 416085 as yet unmatched pairs. 6263 records in RAM.
INFO 2026-06-08 08:55:53 MarkDuplicates Read 464,000,000 records. Elapsed time: 00:14:15s. Time for last 1,000,000: 1s. Last read position: chr16:88,809,609
INFO 2026-06-08 08:55:53 MarkDuplicates Tracking 413337 as yet unmatched pairs. 3515 records in RAM.
INFO 2026-06-08 08:55:54 MarkDuplicates Read 465,000,000 records. Elapsed time: 00:14:17s. Time for last 1,000,000: 1s. Last read position: chr16:89,722,610
INFO 2026-06-08 08:55:54 MarkDuplicates Tracking 410850 as yet unmatched pairs. 1024 records in RAM.
INFO 2026-06-08 08:55:57 MarkDuplicates Read 466,000,000 records. Elapsed time: 00:14:20s. Time for last 1,000,000: 2s. Last read position: chr17:1,361,226
INFO 2026-06-08 08:55:57 MarkDuplicates Tracking 411435 as yet unmatched pairs. 141134 records in RAM.
INFO 2026-06-08 08:55:59 MarkDuplicates Read 467,000,000 records. Elapsed time: 00:14:21s. Time for last 1,000,000: 1s. Last read position: chr17:1,677,076
INFO 2026-06-08 08:55:59 MarkDuplicates Tracking 406410 as yet unmatched pairs. 136109 records in RAM.
INFO 2026-06-08 08:56:00 MarkDuplicates Read 468,000,000 records. Elapsed time: 00:14:23s. Time for last 1,000,000: 1s. Last read position: chr17:3,624,151
INFO 2026-06-08 08:56:00 MarkDuplicates Tracking 403949 as yet unmatched pairs. 133644 records in RAM.
INFO 2026-06-08 08:56:02 MarkDuplicates Read 469,000,000 records. Elapsed time: 00:14:25s. Time for last 1,000,000: 1s. Last read position: chr17:4,691,036
INFO 2026-06-08 08:56:02 MarkDuplicates Tracking 401220 as yet unmatched pairs. 130915 records in RAM.
INFO 2026-06-08 08:56:04 MarkDuplicates Read 470,000,000 records. Elapsed time: 00:14:26s. Time for last 1,000,000: 1s. Last read position: chr17:5,386,205
INFO 2026-06-08 08:56:04 MarkDuplicates Tracking 398761 as yet unmatched pairs. 128456 records in RAM.
INFO 2026-06-08 08:56:05 MarkDuplicates Read 471,000,000 records. Elapsed time: 00:14:28s. Time for last 1,000,000: 1s. Last read position: chr17:7,260,660
INFO 2026-06-08 08:56:05 MarkDuplicates Tracking 396644 as yet unmatched pairs. 126339 records in RAM.
INFO 2026-06-08 08:56:07 MarkDuplicates Read 472,000,000 records. Elapsed time: 00:14:30s. Time for last 1,000,000: 1s. Last read position: chr17:7,508,261
INFO 2026-06-08 08:56:07 MarkDuplicates Tracking 394297 as yet unmatched pairs. 123992 records in RAM.
INFO 2026-06-08 08:56:09 MarkDuplicates Read 473,000,000 records. Elapsed time: 00:14:31s. Time for last 1,000,000: 1s. Last read position: chr17:7,673,551
INFO 2026-06-08 08:56:09 MarkDuplicates Tracking 392455 as yet unmatched pairs. 122149 records in RAM.
INFO 2026-06-08 08:56:11 MarkDuplicates Read 474,000,000 records. Elapsed time: 00:14:33s. Time for last 1,000,000: 1s. Last read position: chr17:8,379,833
INFO 2026-06-08 08:56:11 MarkDuplicates Tracking 392530 as yet unmatched pairs. 122224 records in RAM.
INFO 2026-06-08 08:56:13 MarkDuplicates Read 475,000,000 records. Elapsed time: 00:14:36s. Time for last 1,000,000: 2s. Last read position: chr17:16,382,138
INFO 2026-06-08 08:56:13 MarkDuplicates Tracking 388849 as yet unmatched pairs. 118541 records in RAM.
INFO 2026-06-08 08:56:15 MarkDuplicates Read 476,000,000 records. Elapsed time: 00:14:37s. Time for last 1,000,000: 1s. Last read position: chr17:17,973,897
INFO 2026-06-08 08:56:15 MarkDuplicates Tracking 385354 as yet unmatched pairs. 115046 records in RAM.
INFO 2026-06-08 08:56:16 MarkDuplicates Read 477,000,000 records. Elapsed time: 00:14:39s. Time for last 1,000,000: 1s. Last read position: chr17:21,004,306
INFO 2026-06-08 08:56:16 MarkDuplicates Tracking 383855 as yet unmatched pairs. 113547 records in RAM.
INFO 2026-06-08 08:56:18 MarkDuplicates Read 478,000,000 records. Elapsed time: 00:14:40s. Time for last 1,000,000: 1s. Last read position: chr17:28,715,088
INFO 2026-06-08 08:56:18 MarkDuplicates Tracking 381121 as yet unmatched pairs. 110813 records in RAM.
INFO 2026-06-08 08:56:19 MarkDuplicates Read 479,000,000 records. Elapsed time: 00:14:42s. Time for last 1,000,000: 1s. Last read position: chr17:30,379,172
INFO 2026-06-08 08:56:19 MarkDuplicates Tracking 378711 as yet unmatched pairs. 108403 records in RAM.
INFO 2026-06-08 08:56:21 MarkDuplicates Read 480,000,000 records. Elapsed time: 00:14:44s. Time for last 1,000,000: 1s. Last read position: chr17:35,021,410
INFO 2026-06-08 08:56:21 MarkDuplicates Tracking 376671 as yet unmatched pairs. 106351 records in RAM.
INFO 2026-06-08 08:56:22 MarkDuplicates Read 481,000,000 records. Elapsed time: 00:14:45s. Time for last 1,000,000: 1s. Last read position: chr17:36,952,920
INFO 2026-06-08 08:56:22 MarkDuplicates Tracking 374755 as yet unmatched pairs. 104435 records in RAM.
INFO 2026-06-08 08:56:24 MarkDuplicates Read 482,000,000 records. Elapsed time: 00:14:47s. Time for last 1,000,000: 1s. Last read position: chr17:38,850,148
INFO 2026-06-08 08:56:24 MarkDuplicates Tracking 376695 as yet unmatched pairs. 106373 records in RAM.
INFO 2026-06-08 08:56:26 MarkDuplicates Read 483,000,000 records. Elapsed time: 00:14:48s. Time for last 1,000,000: 1s. Last read position: chr17:39,700,270
INFO 2026-06-08 08:56:26 MarkDuplicates Tracking 371246 as yet unmatched pairs. 100923 records in RAM.
INFO 2026-06-08 08:56:27 MarkDuplicates Read 484,000,000 records. Elapsed time: 00:14:50s. Time for last 1,000,000: 1s. Last read position: chr17:40,192,223
INFO 2026-06-08 08:56:27 MarkDuplicates Tracking 368104 as yet unmatched pairs. 97781 records in RAM.
INFO 2026-06-08 08:56:30 MarkDuplicates Read 485,000,000 records. Elapsed time: 00:14:52s. Time for last 1,000,000: 2s. Last read position: chr17:41,523,867
INFO 2026-06-08 08:56:30 MarkDuplicates Tracking 367398 as yet unmatched pairs. 97074 records in RAM.
INFO 2026-06-08 08:56:32 MarkDuplicates Read 486,000,000 records. Elapsed time: 00:14:54s. Time for last 1,000,000: 1s. Last read position: chr17:41,769,549
INFO 2026-06-08 08:56:32 MarkDuplicates Tracking 363331 as yet unmatched pairs. 93007 records in RAM.
INFO 2026-06-08 08:56:33 MarkDuplicates Read 487,000,000 records. Elapsed time: 00:14:56s. Time for last 1,000,000: 1s. Last read position: chr17:42,564,087
INFO 2026-06-08 08:56:33 MarkDuplicates Tracking 360647 as yet unmatched pairs. 90323 records in RAM.
INFO 2026-06-08 08:56:35 MarkDuplicates Read 488,000,000 records. Elapsed time: 00:14:57s. Time for last 1,000,000: 1s. Last read position: chr17:43,769,621
INFO 2026-06-08 08:56:35 MarkDuplicates Tracking 358294 as yet unmatched pairs. 87970 records in RAM.
INFO 2026-06-08 08:56:36 MarkDuplicates Read 489,000,000 records. Elapsed time: 00:14:59s. Time for last 1,000,000: 1s. Last read position: chr17:44,936,312
INFO 2026-06-08 08:56:36 MarkDuplicates Tracking 355851 as yet unmatched pairs. 85526 records in RAM.
INFO 2026-06-08 08:56:38 MarkDuplicates Read 490,000,000 records. Elapsed time: 00:15:00s. Time for last 1,000,000: 1s. Last read position: chr17:46,938,557
INFO 2026-06-08 08:56:38 MarkDuplicates Tracking 354240 as yet unmatched pairs. 83915 records in RAM.
INFO 2026-06-08 08:56:39 MarkDuplicates Read 491,000,000 records. Elapsed time: 00:15:02s. Time for last 1,000,000: 1s. Last read position: chr17:48,608,015
INFO 2026-06-08 08:56:39 MarkDuplicates Tracking 351725 as yet unmatched pairs. 81400 records in RAM.
INFO 2026-06-08 08:56:41 MarkDuplicates Read 492,000,000 records. Elapsed time: 00:15:03s. Time for last 1,000,000: 1s. Last read position: chr17:50,185,926
INFO 2026-06-08 08:56:41 MarkDuplicates Tracking 352080 as yet unmatched pairs. 81755 records in RAM.
INFO 2026-06-08 08:56:42 MarkDuplicates Read 493,000,000 records. Elapsed time: 00:15:05s. Time for last 1,000,000: 1s. Last read position: chr17:50,187,024
INFO 2026-06-08 08:56:42 MarkDuplicates Tracking 377824 as yet unmatched pairs. 107499 records in RAM.
INFO 2026-06-08 08:56:44 MarkDuplicates Read 494,000,000 records. Elapsed time: 00:15:07s. Time for last 1,000,000: 1s. Last read position: chr17:50,187,963
INFO 2026-06-08 08:56:44 MarkDuplicates Tracking 370341 as yet unmatched pairs. 100014 records in RAM.
INFO 2026-06-08 08:56:46 MarkDuplicates Read 495,000,000 records. Elapsed time: 00:15:08s. Time for last 1,000,000: 1s. Last read position: chr17:50,188,771
INFO 2026-06-08 08:56:46 MarkDuplicates Tracking 372132 as yet unmatched pairs. 101805 records in RAM.
INFO 2026-06-08 08:56:47 MarkDuplicates Read 496,000,000 records. Elapsed time: 00:15:10s. Time for last 1,000,000: 1s. Last read position: chr17:50,189,410
INFO 2026-06-08 08:56:47 MarkDuplicates Tracking 361380 as yet unmatched pairs. 91053 records in RAM.
INFO 2026-06-08 08:56:50 MarkDuplicates Read 497,000,000 records. Elapsed time: 00:15:12s. Time for last 1,000,000: 2s. Last read position: chr17:50,189,899
INFO 2026-06-08 08:56:50 MarkDuplicates Tracking 355419 as yet unmatched pairs. 85091 records in RAM.
INFO 2026-06-08 08:56:51 MarkDuplicates Read 498,000,000 records. Elapsed time: 00:15:14s. Time for last 1,000,000: 1s. Last read position: chr17:50,190,585
INFO 2026-06-08 08:56:51 MarkDuplicates Tracking 343140 as yet unmatched pairs. 72810 records in RAM.
INFO 2026-06-08 08:56:53 MarkDuplicates Read 499,000,000 records. Elapsed time: 00:15:16s. Time for last 1,000,000: 1s. Last read position: chr17:50,191,866
INFO 2026-06-08 08:56:53 MarkDuplicates Tracking 365975 as yet unmatched pairs. 95645 records in RAM.
INFO 2026-06-08 08:59:04 MarkDuplicates Read 500,000,000 records. Elapsed time: 00:17:27s. Time for last 1,000,000: 131s. Last read position: chr17:50,192,831
INFO 2026-06-08 08:59:04 MarkDuplicates Tracking 359959 as yet unmatched pairs. 89629 records in RAM.
INFO 2026-06-08 08:59:06 MarkDuplicates Read 501,000,000 records. Elapsed time: 00:17:29s. Time for last 1,000,000: 2s. Last read position: chr17:50,194,129
INFO 2026-06-08 08:59:06 MarkDuplicates Tracking 363896 as yet unmatched pairs. 93566 records in RAM.
INFO 2026-06-08 08:59:08 MarkDuplicates Read 502,000,000 records. Elapsed time: 00:17:31s. Time for last 1,000,000: 1s. Last read position: chr17:50,194,615
INFO 2026-06-08 08:59:08 MarkDuplicates Tracking 345990 as yet unmatched pairs. 75659 records in RAM.
INFO 2026-06-08 08:59:10 MarkDuplicates Read 503,000,000 records. Elapsed time: 00:17:32s. Time for last 1,000,000: 1s. Last read position: chr17:50,195,380
INFO 2026-06-08 08:59:10 MarkDuplicates Tracking 336251 as yet unmatched pairs. 65917 records in RAM.
INFO 2026-06-08 08:59:11 MarkDuplicates Read 504,000,000 records. Elapsed time: 00:17:34s. Time for last 1,000,000: 1s. Last read position: chr17:50,196,158
INFO 2026-06-08 08:59:11 MarkDuplicates Tracking 346971 as yet unmatched pairs. 76637 records in RAM.
INFO 2026-06-08 08:59:13 MarkDuplicates Read 505,000,000 records. Elapsed time: 00:17:36s. Time for last 1,000,000: 1s. Last read position: chr17:50,196,644
INFO 2026-06-08 08:59:13 MarkDuplicates Tracking 347654 as yet unmatched pairs. 77320 records in RAM.
INFO 2026-06-08 08:59:15 MarkDuplicates Read 506,000,000 records. Elapsed time: 00:17:38s. Time for last 1,000,000: 1s. Last read position: chr17:50,197,769
INFO 2026-06-08 08:59:15 MarkDuplicates Tracking 338820 as yet unmatched pairs. 68486 records in RAM.
INFO 2026-06-08 08:59:17 MarkDuplicates Read 507,000,000 records. Elapsed time: 00:17:39s. Time for last 1,000,000: 1s. Last read position: chr17:50,199,290
INFO 2026-06-08 08:59:17 MarkDuplicates Tracking 328180 as yet unmatched pairs. 57846 records in RAM.
INFO 2026-06-08 08:59:19 MarkDuplicates Read 508,000,000 records. Elapsed time: 00:17:41s. Time for last 1,000,000: 1s. Last read position: chr17:50,385,163
INFO 2026-06-08 08:59:19 MarkDuplicates Tracking 308847 as yet unmatched pairs. 38511 records in RAM.
INFO 2026-06-08 08:59:20 MarkDuplicates Read 509,000,000 records. Elapsed time: 00:17:43s. Time for last 1,000,000: 1s. Last read position: chr17:57,569,127
INFO 2026-06-08 08:59:20 MarkDuplicates Tracking 306520 as yet unmatched pairs. 36183 records in RAM.
INFO 2026-06-08 08:59:22 MarkDuplicates Read 510,000,000 records. Elapsed time: 00:17:44s. Time for last 1,000,000: 1s. Last read position: chr17:59,661,460
INFO 2026-06-08 08:59:22 MarkDuplicates Tracking 304953 as yet unmatched pairs. 34614 records in RAM.
INFO 2026-06-08 08:59:23 MarkDuplicates Read 511,000,000 records. Elapsed time: 00:17:46s. Time for last 1,000,000: 1s. Last read position: chr17:61,982,904
INFO 2026-06-08 08:59:23 MarkDuplicates Tracking 302398 as yet unmatched pairs. 32058 records in RAM.
INFO 2026-06-08 08:59:25 MarkDuplicates Read 512,000,000 records. Elapsed time: 00:17:47s. Time for last 1,000,000: 1s. Last read position: chr17:64,499,862
INFO 2026-06-08 08:59:25 MarkDuplicates Tracking 300173 as yet unmatched pairs. 29832 records in RAM.
INFO 2026-06-08 08:59:27 MarkDuplicates Read 513,000,000 records. Elapsed time: 00:17:49s. Time for last 1,000,000: 1s. Last read position: chr17:67,963,416
INFO 2026-06-08 08:59:27 MarkDuplicates Tracking 297523 as yet unmatched pairs. 27182 records in RAM.
INFO 2026-06-08 08:59:28 MarkDuplicates Read 514,000,000 records. Elapsed time: 00:17:51s. Time for last 1,000,000: 1s. Last read position: chr17:74,209,211
INFO 2026-06-08 08:59:28 MarkDuplicates Tracking 295139 as yet unmatched pairs. 24798 records in RAM.
INFO 2026-06-08 08:59:30 MarkDuplicates Read 515,000,000 records. Elapsed time: 00:17:52s. Time for last 1,000,000: 1s. Last read position: chr17:75,570,960
INFO 2026-06-08 08:59:30 MarkDuplicates Tracking 293046 as yet unmatched pairs. 22704 records in RAM.
INFO 2026-06-08 08:59:31 MarkDuplicates Read 516,000,000 records. Elapsed time: 00:17:54s. Time for last 1,000,000: 1s. Last read position: chr17:75,743,831
INFO 2026-06-08 08:59:31 MarkDuplicates Tracking 291846 as yet unmatched pairs. 21498 records in RAM.
INFO 2026-06-08 08:59:33 MarkDuplicates Read 517,000,000 records. Elapsed time: 00:17:56s. Time for last 1,000,000: 1s. Last read position: chr17:75,920,037
INFO 2026-06-08 08:59:33 MarkDuplicates Tracking 287632 as yet unmatched pairs. 17284 records in RAM.
INFO 2026-06-08 08:59:35 MarkDuplicates Read 518,000,000 records. Elapsed time: 00:17:58s. Time for last 1,000,000: 1s. Last read position: chr17:77,402,634
INFO 2026-06-08 08:59:35 MarkDuplicates Tracking 285494 as yet unmatched pairs. 15146 records in RAM.
INFO 2026-06-08 08:59:37 MarkDuplicates Read 519,000,000 records. Elapsed time: 00:17:59s. Time for last 1,000,000: 1s. Last read position: chr17:78,993,707
INFO 2026-06-08 08:59:37 MarkDuplicates Tracking 283001 as yet unmatched pairs. 12653 records in RAM.
INFO 2026-06-08 08:59:38 MarkDuplicates Read 520,000,000 records. Elapsed time: 00:18:01s. Time for last 1,000,000: 1s. Last read position: chr17:81,103,966
INFO 2026-06-08 08:59:38 MarkDuplicates Tracking 280418 as yet unmatched pairs. 10070 records in RAM.
INFO 2026-06-08 08:59:40 MarkDuplicates Read 521,000,000 records. Elapsed time: 00:18:03s. Time for last 1,000,000: 1s. Last read position: chr17:81,694,996
INFO 2026-06-08 08:59:40 MarkDuplicates Tracking 278063 as yet unmatched pairs. 7715 records in RAM.
INFO 2026-06-08 08:59:42 MarkDuplicates Read 522,000,000 records. Elapsed time: 00:18:05s. Time for last 1,000,000: 1s. Last read position: chr17:81,933,341
INFO 2026-06-08 08:59:42 MarkDuplicates Tracking 276309 as yet unmatched pairs. 5961 records in RAM.
INFO 2026-06-08 08:59:43 MarkDuplicates Read 523,000,000 records. Elapsed time: 00:18:06s. Time for last 1,000,000: 1s. Last read position: chr17:82,091,596
INFO 2026-06-08 08:59:43 MarkDuplicates Tracking 272954 as yet unmatched pairs. 2606 records in RAM.
INFO 2026-06-08 08:59:45 MarkDuplicates Read 524,000,000 records. Elapsed time: 00:18:07s. Time for last 1,000,000: 1s. Last read position: chr18:670,847
INFO 2026-06-08 08:59:45 MarkDuplicates Tracking 270264 as yet unmatched pairs. 13584 records in RAM.
INFO 2026-06-08 08:59:47 MarkDuplicates Read 525,000,000 records. Elapsed time: 00:18:09s. Time for last 1,000,000: 1s. Last read position: chr18:9,859,286
INFO 2026-06-08 08:59:47 MarkDuplicates Tracking 267992 as yet unmatched pairs. 11303 records in RAM.
INFO 2026-06-08 08:59:49 MarkDuplicates Read 526,000,000 records. Elapsed time: 00:18:11s. Time for last 1,000,000: 1s. Last read position: chr18:26,018,369
INFO 2026-06-08 08:59:49 MarkDuplicates Tracking 265900 as yet unmatched pairs. 9209 records in RAM.
INFO 2026-06-08 08:59:50 MarkDuplicates Read 527,000,000 records. Elapsed time: 00:18:13s. Time for last 1,000,000: 1s. Last read position: chr18:36,126,402
INFO 2026-06-08 08:59:50 MarkDuplicates Tracking 264026 as yet unmatched pairs. 7333 records in RAM.
INFO 2026-06-08 08:59:51 MarkDuplicates Read 528,000,000 records. Elapsed time: 00:18:14s. Time for last 1,000,000: 1s. Last read position: chr18:50,272,874
INFO 2026-06-08 08:59:51 MarkDuplicates Tracking 262005 as yet unmatched pairs. 5312 records in RAM.
INFO 2026-06-08 08:59:53 MarkDuplicates Read 529,000,000 records. Elapsed time: 00:18:16s. Time for last 1,000,000: 1s. Last read position: chr18:59,902,682
INFO 2026-06-08 08:59:53 MarkDuplicates Tracking 259876 as yet unmatched pairs. 3181 records in RAM.
INFO 2026-06-08 08:59:55 MarkDuplicates Read 530,000,000 records. Elapsed time: 00:18:17s. Time for last 1,000,000: 1s. Last read position: chr18:79,973,658
INFO 2026-06-08 08:59:55 MarkDuplicates Tracking 257315 as yet unmatched pairs. 620 records in RAM.
INFO 2026-06-08 08:59:57 MarkDuplicates Read 531,000,000 records. Elapsed time: 00:18:20s. Time for last 1,000,000: 2s. Last read position: chr19:757,561
INFO 2026-06-08 08:59:57 MarkDuplicates Tracking 255048 as yet unmatched pairs. 118156 records in RAM.
INFO 2026-06-08 08:59:59 MarkDuplicates Read 532,000,000 records. Elapsed time: 00:18:21s. Time for last 1,000,000: 1s. Last read position: chr19:1,037,809
INFO 2026-06-08 08:59:59 MarkDuplicates Tracking 252512 as yet unmatched pairs. 115620 records in RAM.
INFO 2026-06-08 09:00:00 MarkDuplicates Read 533,000,000 records. Elapsed time: 00:18:23s. Time for last 1,000,000: 1s. Last read position: chr19:1,425,913
INFO 2026-06-08 09:00:00 MarkDuplicates Tracking 249373 as yet unmatched pairs. 112480 records in RAM.
INFO 2026-06-08 09:00:02 MarkDuplicates Read 534,000,000 records. Elapsed time: 00:18:24s. Time for last 1,000,000: 1s. Last read position: chr19:1,848,172
INFO 2026-06-08 09:00:02 MarkDuplicates Tracking 246494 as yet unmatched pairs. 109601 records in RAM.
INFO 2026-06-08 09:00:03 MarkDuplicates Read 535,000,000 records. Elapsed time: 00:18:26s. Time for last 1,000,000: 1s. Last read position: chr19:2,291,385
INFO 2026-06-08 09:00:03 MarkDuplicates Tracking 243931 as yet unmatched pairs. 107038 records in RAM.
INFO 2026-06-08 09:00:05 MarkDuplicates Read 536,000,000 records. Elapsed time: 00:18:28s. Time for last 1,000,000: 1s. Last read position: chr19:3,544,846
INFO 2026-06-08 09:00:05 MarkDuplicates Tracking 241608 as yet unmatched pairs. 104713 records in RAM.
INFO 2026-06-08 09:00:07 MarkDuplicates Read 537,000,000 records. Elapsed time: 00:18:29s. Time for last 1,000,000: 1s. Last read position: chr19:4,446,394
INFO 2026-06-08 09:00:07 MarkDuplicates Tracking 238624 as yet unmatched pairs. 101728 records in RAM.
INFO 2026-06-08 09:00:08 MarkDuplicates Read 538,000,000 records. Elapsed time: 00:18:31s. Time for last 1,000,000: 1s. Last read position: chr19:5,649,490
INFO 2026-06-08 09:00:08 MarkDuplicates Tracking 236442 as yet unmatched pairs. 99546 records in RAM.
INFO 2026-06-08 09:00:10 MarkDuplicates Read 539,000,000 records. Elapsed time: 00:18:33s. Time for last 1,000,000: 2s. Last read position: chr19:6,417,732
INFO 2026-06-08 09:00:10 MarkDuplicates Tracking 234583 as yet unmatched pairs. 97687 records in RAM.
INFO 2026-06-08 09:00:13 MarkDuplicates Read 540,000,000 records. Elapsed time: 00:18:36s. Time for last 1,000,000: 2s. Last read position: chr19:7,519,952
INFO 2026-06-08 09:00:13 MarkDuplicates Tracking 231392 as yet unmatched pairs. 94496 records in RAM.
INFO 2026-06-08 09:00:15 MarkDuplicates Read 541,000,000 records. Elapsed time: 00:18:37s. Time for last 1,000,000: 1s. Last read position: chr19:8,445,065
INFO 2026-06-08 09:00:15 MarkDuplicates Tracking 228993 as yet unmatched pairs. 92096 records in RAM.
INFO 2026-06-08 09:00:16 MarkDuplicates Read 542,000,000 records. Elapsed time: 00:18:39s. Time for last 1,000,000: 1s. Last read position: chr19:10,119,090
INFO 2026-06-08 09:00:16 MarkDuplicates Tracking 226680 as yet unmatched pairs. 89783 records in RAM.
INFO 2026-06-08 09:00:18 MarkDuplicates Read 543,000,000 records. Elapsed time: 00:18:40s. Time for last 1,000,000: 1s. Last read position: chr19:10,671,002
INFO 2026-06-08 09:00:18 MarkDuplicates Tracking 224127 as yet unmatched pairs. 87230 records in RAM.
INFO 2026-06-08 09:00:19 MarkDuplicates Read 544,000,000 records. Elapsed time: 00:18:42s. Time for last 1,000,000: 1s. Last read position: chr19:11,041,477
INFO 2026-06-08 09:00:19 MarkDuplicates Tracking 221512 as yet unmatched pairs. 84615 records in RAM.
INFO 2026-06-08 09:00:21 MarkDuplicates Read 545,000,000 records. Elapsed time: 00:18:43s. Time for last 1,000,000: 1s. Last read position: chr19:11,666,472
INFO 2026-06-08 09:00:21 MarkDuplicates Tracking 218897 as yet unmatched pairs. 81999 records in RAM.
INFO 2026-06-08 09:00:22 MarkDuplicates Read 546,000,000 records. Elapsed time: 00:18:45s. Time for last 1,000,000: 1s. Last read position: chr19:12,938,730
INFO 2026-06-08 09:00:22 MarkDuplicates Tracking 217768 as yet unmatched pairs. 80870 records in RAM.
INFO 2026-06-08 09:00:24 MarkDuplicates Read 547,000,000 records. Elapsed time: 00:18:46s. Time for last 1,000,000: 1s. Last read position: chr19:13,970,110
INFO 2026-06-08 09:00:24 MarkDuplicates Tracking 214016 as yet unmatched pairs. 77118 records in RAM.
INFO 2026-06-08 09:00:25 MarkDuplicates Read 548,000,000 records. Elapsed time: 00:18:48s. Time for last 1,000,000: 1s. Last read position: chr19:14,516,670
INFO 2026-06-08 09:00:25 MarkDuplicates Tracking 214277 as yet unmatched pairs. 77379 records in RAM.
INFO 2026-06-08 09:00:27 MarkDuplicates Read 549,000,000 records. Elapsed time: 00:18:49s. Time for last 1,000,000: 1s. Last read position: chr19:15,238,849
INFO 2026-06-08 09:00:27 MarkDuplicates Tracking 209459 as yet unmatched pairs. 72561 records in RAM.
INFO 2026-06-08 09:00:28 MarkDuplicates Read 550,000,000 records. Elapsed time: 00:18:51s. Time for last 1,000,000: 1s. Last read position: chr19:15,424,270
INFO 2026-06-08 09:00:28 MarkDuplicates Tracking 206961 as yet unmatched pairs. 70063 records in RAM.
INFO 2026-06-08 09:00:30 MarkDuplicates Read 551,000,000 records. Elapsed time: 00:18:53s. Time for last 1,000,000: 1s. Last read position: chr19:17,226,837
INFO 2026-06-08 09:00:30 MarkDuplicates Tracking 204355 as yet unmatched pairs. 67448 records in RAM.
INFO 2026-06-08 09:00:31 MarkDuplicates Read 552,000,000 records. Elapsed time: 00:18:54s. Time for last 1,000,000: 1s. Last read position: chr19:17,862,960
INFO 2026-06-08 09:00:31 MarkDuplicates Tracking 202733 as yet unmatched pairs. 65824 records in RAM.
INFO 2026-06-08 09:00:33 MarkDuplicates Read 553,000,000 records. Elapsed time: 00:18:56s. Time for last 1,000,000: 1s. Last read position: chr19:18,573,697
INFO 2026-06-08 09:00:33 MarkDuplicates Tracking 200357 as yet unmatched pairs. 63448 records in RAM.
INFO 2026-06-08 09:00:35 MarkDuplicates Read 554,000,000 records. Elapsed time: 00:18:58s. Time for last 1,000,000: 2s. Last read position: chr19:19,516,305
INFO 2026-06-08 09:00:35 MarkDuplicates Tracking 197151 as yet unmatched pairs. 60242 records in RAM.
INFO 2026-06-08 09:00:37 MarkDuplicates Read 555,000,000 records. Elapsed time: 00:19:00s. Time for last 1,000,000: 1s. Last read position: chr19:34,219,774
INFO 2026-06-08 09:00:37 MarkDuplicates Tracking 194418 as yet unmatched pairs. 57508 records in RAM.
INFO 2026-06-08 09:00:39 MarkDuplicates Read 556,000,000 records. Elapsed time: 00:19:01s. Time for last 1,000,000: 1s. Last read position: chr19:35,266,483
INFO 2026-06-08 09:00:39 MarkDuplicates Tracking 193146 as yet unmatched pairs. 56236 records in RAM.
INFO 2026-06-08 09:00:40 MarkDuplicates Read 557,000,000 records. Elapsed time: 00:19:03s. Time for last 1,000,000: 1s. Last read position: chr19:35,903,886
INFO 2026-06-08 09:00:40 MarkDuplicates Tracking 189104 as yet unmatched pairs. 52194 records in RAM.
INFO 2026-06-08 09:00:41 MarkDuplicates Read 558,000,000 records. Elapsed time: 00:19:04s. Time for last 1,000,000: 1s. Last read position: chr19:38,309,035
INFO 2026-06-08 09:00:41 MarkDuplicates Tracking 186782 as yet unmatched pairs. 49872 records in RAM.
INFO 2026-06-08 09:00:43 MarkDuplicates Read 559,000,000 records. Elapsed time: 00:19:06s. Time for last 1,000,000: 1s. Last read position: chr19:38,724,518
INFO 2026-06-08 09:00:43 MarkDuplicates Tracking 185194 as yet unmatched pairs. 48283 records in RAM.
INFO 2026-06-08 09:00:45 MarkDuplicates Read 560,000,000 records. Elapsed time: 00:19:07s. Time for last 1,000,000: 1s. Last read position: chr19:39,408,082
INFO 2026-06-08 09:00:45 MarkDuplicates Tracking 181902 as yet unmatched pairs. 44991 records in RAM.
INFO 2026-06-08 09:00:46 MarkDuplicates Read 561,000,000 records. Elapsed time: 00:19:09s. Time for last 1,000,000: 1s. Last read position: chr19:40,075,126
INFO 2026-06-08 09:00:46 MarkDuplicates Tracking 179547 as yet unmatched pairs. 42636 records in RAM.
INFO 2026-06-08 09:00:48 MarkDuplicates Read 562,000,000 records. Elapsed time: 00:19:10s. Time for last 1,000,000: 1s. Last read position: chr19:41,237,941
INFO 2026-06-08 09:00:48 MarkDuplicates Tracking 177125 as yet unmatched pairs. 40214 records in RAM.
INFO 2026-06-08 09:00:49 MarkDuplicates Read 563,000,000 records. Elapsed time: 00:19:12s. Time for last 1,000,000: 1s. Last read position: chr19:41,906,740
INFO 2026-06-08 09:00:49 MarkDuplicates Tracking 174887 as yet unmatched pairs. 37975 records in RAM.
INFO 2026-06-08 09:00:51 MarkDuplicates Read 564,000,000 records. Elapsed time: 00:19:13s. Time for last 1,000,000: 1s. Last read position: chr19:42,352,211
INFO 2026-06-08 09:00:51 MarkDuplicates Tracking 172206 as yet unmatched pairs. 35294 records in RAM.
INFO 2026-06-08 09:00:52 MarkDuplicates Read 565,000,000 records. Elapsed time: 00:19:15s. Time for last 1,000,000: 1s. Last read position: chr19:44,909,121
INFO 2026-06-08 09:00:52 MarkDuplicates Tracking 169884 as yet unmatched pairs. 32968 records in RAM.
INFO 2026-06-08 09:00:54 MarkDuplicates Read 566,000,000 records. Elapsed time: 00:19:16s. Time for last 1,000,000: 1s. Last read position: chr19:45,687,487
INFO 2026-06-08 09:00:54 MarkDuplicates Tracking 167198 as yet unmatched pairs. 30282 records in RAM.
INFO 2026-06-08 09:00:55 MarkDuplicates Read 567,000,000 records. Elapsed time: 00:19:18s. Time for last 1,000,000: 1s. Last read position: chr19:46,775,649
INFO 2026-06-08 09:00:55 MarkDuplicates Tracking 165611 as yet unmatched pairs. 28690 records in RAM.
INFO 2026-06-08 09:00:57 MarkDuplicates Read 568,000,000 records. Elapsed time: 00:19:19s. Time for last 1,000,000: 1s. Last read position: chr19:47,094,026
INFO 2026-06-08 09:00:57 MarkDuplicates Tracking 161757 as yet unmatched pairs. 24836 records in RAM.
INFO 2026-06-08 09:00:59 MarkDuplicates Read 569,000,000 records. Elapsed time: 00:19:21s. Time for last 1,000,000: 1s. Last read position: chr19:48,473,339
INFO 2026-06-08 09:00:59 MarkDuplicates Tracking 159487 as yet unmatched pairs. 22566 records in RAM.
INFO 2026-06-08 09:01:01 MarkDuplicates Read 570,000,000 records. Elapsed time: 00:19:23s. Time for last 1,000,000: 1s. Last read position: chr19:49,015,628
INFO 2026-06-08 09:01:01 MarkDuplicates Tracking 156957 as yet unmatched pairs. 20036 records in RAM.
INFO 2026-06-08 09:01:02 MarkDuplicates Read 571,000,000 records. Elapsed time: 00:19:25s. Time for last 1,000,000: 1s. Last read position: chr19:49,542,695
INFO 2026-06-08 09:01:02 MarkDuplicates Tracking 154569 as yet unmatched pairs. 17648 records in RAM.
INFO 2026-06-08 09:01:04 MarkDuplicates Read 572,000,000 records. Elapsed time: 00:19:26s. Time for last 1,000,000: 1s. Last read position: chr19:49,854,426
INFO 2026-06-08 09:01:04 MarkDuplicates Tracking 152134 as yet unmatched pairs. 15213 records in RAM.
INFO 2026-06-08 09:01:05 MarkDuplicates Read 573,000,000 records. Elapsed time: 00:19:28s. Time for last 1,000,000: 1s. Last read position: chr19:50,480,736
INFO 2026-06-08 09:01:05 MarkDuplicates Tracking 149636 as yet unmatched pairs. 12715 records in RAM.
INFO 2026-06-08 09:01:07 MarkDuplicates Read 574,000,000 records. Elapsed time: 00:19:29s. Time for last 1,000,000: 1s. Last read position: chr19:53,873,781
INFO 2026-06-08 09:01:07 MarkDuplicates Tracking 147028 as yet unmatched pairs. 10107 records in RAM.
INFO 2026-06-08 09:01:08 MarkDuplicates Read 575,000,000 records. Elapsed time: 00:19:31s. Time for last 1,000,000: 1s. Last read position: chr19:54,939,756
INFO 2026-06-08 09:01:08 MarkDuplicates Tracking 144467 as yet unmatched pairs. 7546 records in RAM.
INFO 2026-06-08 09:01:10 MarkDuplicates Read 576,000,000 records. Elapsed time: 00:19:33s. Time for last 1,000,000: 1s. Last read position: chr19:55,483,551
INFO 2026-06-08 09:01:10 MarkDuplicates Tracking 141754 as yet unmatched pairs. 4833 records in RAM.
INFO 2026-06-08 09:01:11 MarkDuplicates Read 577,000,000 records. Elapsed time: 00:19:34s. Time for last 1,000,000: 1s. Last read position: chr19:58,085,224
INFO 2026-06-08 09:01:11 MarkDuplicates Tracking 139139 as yet unmatched pairs. 2218 records in RAM.
INFO 2026-06-08 09:01:14 MarkDuplicates Read 578,000,000 records. Elapsed time: 00:19:36s. Time for last 1,000,000: 2s. Last read position: chr20:396,540
INFO 2026-06-08 09:01:14 MarkDuplicates Tracking 136952 as yet unmatched pairs. 37771 records in RAM.
INFO 2026-06-08 09:01:15 MarkDuplicates Read 579,000,000 records. Elapsed time: 00:19:38s. Time for last 1,000,000: 1s. Last read position: chr20:3,200,407
INFO 2026-06-08 09:01:15 MarkDuplicates Tracking 134488 as yet unmatched pairs. 35307 records in RAM.
INFO 2026-06-08 09:01:17 MarkDuplicates Read 580,000,000 records. Elapsed time: 00:19:39s. Time for last 1,000,000: 1s. Last read position: chr20:6,094,950
INFO 2026-06-08 09:01:17 MarkDuplicates Tracking 131812 as yet unmatched pairs. 32630 records in RAM.
INFO 2026-06-08 09:01:18 MarkDuplicates Read 581,000,000 records. Elapsed time: 00:19:41s. Time for last 1,000,000: 1s. Last read position: chr20:17,659,605
INFO 2026-06-08 09:01:18 MarkDuplicates Tracking 129435 as yet unmatched pairs. 30253 records in RAM.
INFO 2026-06-08 09:01:20 MarkDuplicates Read 582,000,000 records. Elapsed time: 00:19:43s. Time for last 1,000,000: 1s. Last read position: chr20:25,271,407
INFO 2026-06-08 09:01:20 MarkDuplicates Tracking 127860 as yet unmatched pairs. 28678 records in RAM.
INFO 2026-06-08 09:01:21 MarkDuplicates Read 583,000,000 records. Elapsed time: 00:19:44s. Time for last 1,000,000: 1s. Last read position: chr20:32,435,527
INFO 2026-06-08 09:01:21 MarkDuplicates Tracking 124910 as yet unmatched pairs. 25728 records in RAM.
INFO 2026-06-08 09:01:23 MarkDuplicates Read 584,000,000 records. Elapsed time: 00:19:46s. Time for last 1,000,000: 1s. Last read position: chr20:35,134,787
INFO 2026-06-08 09:01:23 MarkDuplicates Tracking 122489 as yet unmatched pairs. 23304 records in RAM.
INFO 2026-06-08 09:01:25 MarkDuplicates Read 585,000,000 records. Elapsed time: 00:19:48s. Time for last 1,000,000: 1s. Last read position: chr20:36,605,997
INFO 2026-06-08 09:01:25 MarkDuplicates Tracking 120268 as yet unmatched pairs. 21083 records in RAM.
INFO 2026-06-08 09:01:27 MarkDuplicates Read 586,000,000 records. Elapsed time: 00:19:49s. Time for last 1,000,000: 1s. Last read position: chr20:41,159,922
INFO 2026-06-08 09:01:27 MarkDuplicates Tracking 117719 as yet unmatched pairs. 18533 records in RAM.
INFO 2026-06-08 09:01:28 MarkDuplicates Read 587,000,000 records. Elapsed time: 00:19:51s. Time for last 1,000,000: 1s. Last read position: chr20:45,416,657
INFO 2026-06-08 09:01:28 MarkDuplicates Tracking 115598 as yet unmatched pairs. 16412 records in RAM.
INFO 2026-06-08 09:01:30 MarkDuplicates Read 588,000,000 records. Elapsed time: 00:19:52s. Time for last 1,000,000: 1s. Last read position: chr20:48,965,960
INFO 2026-06-08 09:01:30 MarkDuplicates Tracking 113373 as yet unmatched pairs. 14187 records in RAM.
INFO 2026-06-08 09:01:31 MarkDuplicates Read 589,000,000 records. Elapsed time: 00:19:54s. Time for last 1,000,000: 1s. Last read position: chr20:54,173,085
INFO 2026-06-08 09:01:31 MarkDuplicates Tracking 110744 as yet unmatched pairs. 11555 records in RAM.
INFO 2026-06-08 09:01:33 MarkDuplicates Read 590,000,000 records. Elapsed time: 00:19:55s. Time for last 1,000,000: 1s. Last read position: chr20:58,909,413
INFO 2026-06-08 09:01:33 MarkDuplicates Tracking 108558 as yet unmatched pairs. 9368 records in RAM.
INFO 2026-06-08 09:01:34 MarkDuplicates Read 591,000,000 records. Elapsed time: 00:19:57s. Time for last 1,000,000: 1s. Last read position: chr20:62,387,340
INFO 2026-06-08 09:01:34 MarkDuplicates Tracking 106259 as yet unmatched pairs. 7067 records in RAM.
INFO 2026-06-08 09:01:35 MarkDuplicates Read 592,000,000 records. Elapsed time: 00:19:58s. Time for last 1,000,000: 1s. Last read position: chr20:62,880,765
INFO 2026-06-08 09:01:35 MarkDuplicates Tracking 103350 as yet unmatched pairs. 4158 records in RAM.
INFO 2026-06-08 09:01:37 MarkDuplicates Read 593,000,000 records. Elapsed time: 00:20:00s. Time for last 1,000,000: 1s. Last read position: chr20:63,700,613
INFO 2026-06-08 09:01:37 MarkDuplicates Tracking 101065 as yet unmatched pairs. 1872 records in RAM.
INFO 2026-06-08 09:01:39 MarkDuplicates Read 594,000,000 records. Elapsed time: 00:20:01s. Time for last 1,000,000: 1s. Last read position: chr21:8,214,657
INFO 2026-06-08 09:01:39 MarkDuplicates Tracking 98808 as yet unmatched pairs. 19110 records in RAM.
INFO 2026-06-08 09:01:40 MarkDuplicates Read 595,000,000 records. Elapsed time: 00:20:02s. Time for last 1,000,000: 1s. Last read position: chr21:8,260,228
INFO 2026-06-08 09:01:40 MarkDuplicates Tracking 97496 as yet unmatched pairs. 17788 records in RAM.
INFO 2026-06-08 09:01:41 MarkDuplicates Read 596,000,000 records. Elapsed time: 00:20:04s. Time for last 1,000,000: 1s. Last read position: chr21:8,441,962
INFO 2026-06-08 09:01:41 MarkDuplicates Tracking 96859 as yet unmatched pairs. 17147 records in RAM.
INFO 2026-06-08 09:01:42 MarkDuplicates Read 597,000,000 records. Elapsed time: 00:20:05s. Time for last 1,000,000: 1s. Last read position: chr21:25,362,225
INFO 2026-06-08 09:01:42 MarkDuplicates Tracking 95141 as yet unmatched pairs. 15429 records in RAM.
INFO 2026-06-08 09:01:44 MarkDuplicates Read 598,000,000 records. Elapsed time: 00:20:06s. Time for last 1,000,000: 1s. Last read position: chr21:32,347,023
INFO 2026-06-08 09:01:44 MarkDuplicates Tracking 93254 as yet unmatched pairs. 13542 records in RAM.
INFO 2026-06-08 09:01:45 MarkDuplicates Read 599,000,000 records. Elapsed time: 00:20:08s. Time for last 1,000,000: 1s. Last read position: chr21:34,887,036
INFO 2026-06-08 09:01:45 MarkDuplicates Tracking 91178 as yet unmatched pairs. 11466 records in RAM.
INFO 2026-06-08 09:01:47 MarkDuplicates Read 600,000,000 records. Elapsed time: 00:20:10s. Time for last 1,000,000: 1s. Last read position: chr21:41,494,485
INFO 2026-06-08 09:01:47 MarkDuplicates Tracking 88300 as yet unmatched pairs. 8588 records in RAM.
INFO 2026-06-08 09:01:48 MarkDuplicates Read 601,000,000 records. Elapsed time: 00:20:11s. Time for last 1,000,000: 1s. Last read position: chr21:44,771,461
INFO 2026-06-08 09:01:48 MarkDuplicates Tracking 86332 as yet unmatched pairs. 6618 records in RAM.
INFO 2026-06-08 09:01:50 MarkDuplicates Read 602,000,000 records. Elapsed time: 00:20:13s. Time for last 1,000,000: 1s. Last read position: chr21:45,992,162
INFO 2026-06-08 09:01:50 MarkDuplicates Tracking 84637 as yet unmatched pairs. 4923 records in RAM.
INFO 2026-06-08 09:01:51 MarkDuplicates Read 603,000,000 records. Elapsed time: 00:20:14s. Time for last 1,000,000: 1s. Last read position: chr21:46,244,818
INFO 2026-06-08 09:01:51 MarkDuplicates Tracking 81416 as yet unmatched pairs. 1702 records in RAM.
INFO 2026-06-08 09:01:53 MarkDuplicates Read 604,000,000 records. Elapsed time: 00:20:16s. Time for last 1,000,000: 1s. Last read position: chr22:19,435,797
INFO 2026-06-08 09:01:53 MarkDuplicates Tracking 78417 as yet unmatched pairs. 37860 records in RAM.
INFO 2026-06-08 09:01:55 MarkDuplicates Read 605,000,000 records. Elapsed time: 00:20:17s. Time for last 1,000,000: 1s. Last read position: chr22:21,446,389
INFO 2026-06-08 09:01:55 MarkDuplicates Tracking 76047 as yet unmatched pairs. 35490 records in RAM.
INFO 2026-06-08 09:01:56 MarkDuplicates Read 606,000,000 records. Elapsed time: 00:20:19s. Time for last 1,000,000: 1s. Last read position: chr22:23,787,088
INFO 2026-06-08 09:01:56 MarkDuplicates Tracking 73690 as yet unmatched pairs. 33133 records in RAM.
INFO 2026-06-08 09:01:58 MarkDuplicates Read 607,000,000 records. Elapsed time: 00:20:20s. Time for last 1,000,000: 1s. Last read position: chr22:25,170,836
INFO 2026-06-08 09:01:58 MarkDuplicates Tracking 71568 as yet unmatched pairs. 31011 records in RAM.
INFO 2026-06-08 09:02:00 MarkDuplicates Read 608,000,000 records. Elapsed time: 00:20:23s. Time for last 1,000,000: 2s. Last read position: chr22:29,288,760
INFO 2026-06-08 09:02:00 MarkDuplicates Tracking 70288 as yet unmatched pairs. 29730 records in RAM.
INFO 2026-06-08 09:02:02 MarkDuplicates Read 609,000,000 records. Elapsed time: 00:20:24s. Time for last 1,000,000: 1s. Last read position: chr22:30,243,684
INFO 2026-06-08 09:02:02 MarkDuplicates Tracking 66617 as yet unmatched pairs. 26059 records in RAM.
INFO 2026-06-08 09:02:03 MarkDuplicates Read 610,000,000 records. Elapsed time: 00:20:26s. Time for last 1,000,000: 1s. Last read position: chr22:31,715,491
INFO 2026-06-08 09:02:03 MarkDuplicates Tracking 64335 as yet unmatched pairs. 23777 records in RAM.
INFO 2026-06-08 09:02:05 MarkDuplicates Read 611,000,000 records. Elapsed time: 00:20:28s. Time for last 1,000,000: 1s. Last read position: chr22:36,286,733
INFO 2026-06-08 09:02:05 MarkDuplicates Tracking 62586 as yet unmatched pairs. 22028 records in RAM.
INFO 2026-06-08 09:02:07 MarkDuplicates Read 612,000,000 records. Elapsed time: 00:20:29s. Time for last 1,000,000: 1s. Last read position: chr22:36,322,434
INFO 2026-06-08 09:02:07 MarkDuplicates Tracking 60084 as yet unmatched pairs. 19526 records in RAM.
INFO 2026-06-08 09:02:08 MarkDuplicates Read 613,000,000 records. Elapsed time: 00:20:31s. Time for last 1,000,000: 1s. Last read position: chr22:37,678,625
INFO 2026-06-08 09:02:08 MarkDuplicates Tracking 57708 as yet unmatched pairs. 17150 records in RAM.
INFO 2026-06-08 09:02:10 MarkDuplicates Read 614,000,000 records. Elapsed time: 00:20:33s. Time for last 1,000,000: 1s. Last read position: chr22:38,738,174
INFO 2026-06-08 09:02:10 MarkDuplicates Tracking 54457 as yet unmatched pairs. 13899 records in RAM.
INFO 2026-06-08 09:02:12 MarkDuplicates Read 615,000,000 records. Elapsed time: 00:20:34s. Time for last 1,000,000: 1s. Last read position: chr22:40,358,896
INFO 2026-06-08 09:02:12 MarkDuplicates Tracking 52378 as yet unmatched pairs. 11820 records in RAM.
INFO 2026-06-08 09:02:13 MarkDuplicates Read 616,000,000 records. Elapsed time: 00:20:36s. Time for last 1,000,000: 1s. Last read position: chr22:41,636,589
INFO 2026-06-08 09:02:13 MarkDuplicates Tracking 50274 as yet unmatched pairs. 9715 records in RAM.
INFO 2026-06-08 09:02:15 MarkDuplicates Read 617,000,000 records. Elapsed time: 00:20:37s. Time for last 1,000,000: 1s. Last read position: chr22:42,822,384
INFO 2026-06-08 09:02:15 MarkDuplicates Tracking 47897 as yet unmatched pairs. 7338 records in RAM.
INFO 2026-06-08 09:02:16 MarkDuplicates Read 618,000,000 records. Elapsed time: 00:20:39s. Time for last 1,000,000: 1s. Last read position: chr22:49,903,816
INFO 2026-06-08 09:02:16 MarkDuplicates Tracking 45106 as yet unmatched pairs. 4547 records in RAM.
INFO 2026-06-08 09:02:18 MarkDuplicates Read 619,000,000 records. Elapsed time: 00:20:41s. Time for last 1,000,000: 1s. Last read position: chr22:50,466,396
INFO 2026-06-08 09:02:18 MarkDuplicates Tracking 42686 as yet unmatched pairs. 2127 records in RAM.
INFO 2026-06-08 09:02:20 MarkDuplicates Read 620,000,000 records. Elapsed time: 00:20:42s. Time for last 1,000,000: 1s. Last read position: chrX:2,489,331
INFO 2026-06-08 09:02:20 MarkDuplicates Tracking 39637 as yet unmatched pairs. 34205 records in RAM.
INFO 2026-06-08 09:02:22 MarkDuplicates Read 621,000,000 records. Elapsed time: 00:20:44s. Time for last 1,000,000: 1s. Last read position: chrX:18,897,225
INFO 2026-06-08 09:02:22 MarkDuplicates Tracking 37411 as yet unmatched pairs. 31977 records in RAM.
INFO 2026-06-08 09:02:23 MarkDuplicates Read 622,000,000 records. Elapsed time: 00:20:46s. Time for last 1,000,000: 1s. Last read position: chrX:39,787,446
INFO 2026-06-08 09:02:23 MarkDuplicates Tracking 35194 as yet unmatched pairs. 29759 records in RAM.
INFO 2026-06-08 09:02:25 MarkDuplicates Read 623,000,000 records. Elapsed time: 00:20:47s. Time for last 1,000,000: 1s. Last read position: chrX:47,199,227
INFO 2026-06-08 09:02:25 MarkDuplicates Tracking 33373 as yet unmatched pairs. 27937 records in RAM.
INFO 2026-06-08 09:02:26 MarkDuplicates Read 624,000,000 records. Elapsed time: 00:20:49s. Time for last 1,000,000: 1s. Last read position: chrX:48,823,361
INFO 2026-06-08 09:02:26 MarkDuplicates Tracking 30941 as yet unmatched pairs. 25505 records in RAM.
INFO 2026-06-08 09:02:28 MarkDuplicates Read 625,000,000 records. Elapsed time: 00:20:51s. Time for last 1,000,000: 1s. Last read position: chrX:53,405,818
INFO 2026-06-08 09:02:28 MarkDuplicates Tracking 28560 as yet unmatched pairs. 23124 records in RAM.
INFO 2026-06-08 09:02:30 MarkDuplicates Read 626,000,000 records. Elapsed time: 00:20:52s. Time for last 1,000,000: 1s. Last read position: chrX:57,593,187
INFO 2026-06-08 09:02:30 MarkDuplicates Tracking 26203 as yet unmatched pairs. 20767 records in RAM.
INFO 2026-06-08 09:02:31 MarkDuplicates Read 627,000,000 records. Elapsed time: 00:20:54s. Time for last 1,000,000: 1s. Last read position: chrX:71,291,956
INFO 2026-06-08 09:02:31 MarkDuplicates Tracking 24920 as yet unmatched pairs. 19484 records in RAM.
INFO 2026-06-08 09:02:32 MarkDuplicates Read 628,000,000 records. Elapsed time: 00:20:55s. Time for last 1,000,000: 1s. Last read position: chrX:77,682,970
INFO 2026-06-08 09:02:32 MarkDuplicates Tracking 22005 as yet unmatched pairs. 16569 records in RAM.
INFO 2026-06-08 09:02:34 MarkDuplicates Read 629,000,000 records. Elapsed time: 00:20:57s. Time for last 1,000,000: 1s. Last read position: chrX:103,586,667
INFO 2026-06-08 09:02:34 MarkDuplicates Tracking 20343 as yet unmatched pairs. 14907 records in RAM.
INFO 2026-06-08 09:02:36 MarkDuplicates Read 630,000,000 records. Elapsed time: 00:20:59s. Time for last 1,000,000: 1s. Last read position: chrX:120,254,011
INFO 2026-06-08 09:02:36 MarkDuplicates Tracking 17890 as yet unmatched pairs. 12454 records in RAM.
INFO 2026-06-08 09:02:37 MarkDuplicates Read 631,000,000 records. Elapsed time: 00:21:00s. Time for last 1,000,000: 1s. Last read position: chrX:136,509,128
INFO 2026-06-08 09:02:37 MarkDuplicates Tracking 16168 as yet unmatched pairs. 10732 records in RAM.
INFO 2026-06-08 09:02:39 MarkDuplicates Read 632,000,000 records. Elapsed time: 00:21:02s. Time for last 1,000,000: 2s. Last read position: chrX:153,775,973
INFO 2026-06-08 09:02:39 MarkDuplicates Tracking 13764 as yet unmatched pairs. 8327 records in RAM.
INFO 2026-06-08 09:02:41 MarkDuplicates Read 633,000,000 records. Elapsed time: 00:21:04s. Time for last 1,000,000: 1s. Last read position: chrX:154,350,964
INFO 2026-06-08 09:02:41 MarkDuplicates Tracking 11755 as yet unmatched pairs. 6318 records in RAM.
INFO 2026-06-08 09:02:43 MarkDuplicates Read 634,000,000 records. Elapsed time: 00:21:06s. Time for last 1,000,000: 1s. Last read position: chrX:154,362,660
INFO 2026-06-08 09:02:43 MarkDuplicates Tracking 9439 as yet unmatched pairs. 4002 records in RAM.
INFO 2026-06-08 09:02:45 MarkDuplicates Read 635,000,000 records. Elapsed time: 00:21:07s. Time for last 1,000,000: 1s. Last read position: chrX:154,478,754
INFO 2026-06-08 09:02:45 MarkDuplicates Tracking 6381 as yet unmatched pairs. 944 records in RAM.
INFO 2026-06-08 09:02:46 MarkDuplicates Read 636,000,000 records. Elapsed time: 00:21:09s. Time for last 1,000,000: 1s. Last read position: GL000220.1:113,030
INFO 2026-06-08 09:02:46 MarkDuplicates Tracking 4729 as yet unmatched pairs. 1307 records in RAM.
INFO 2026-06-08 09:02:47 MarkDuplicates Read 637,000,000 records. Elapsed time: 00:21:10s. Time for last 1,000,000: 0s. Last read position: GL000220.1:158,122
INFO 2026-06-08 09:02:47 MarkDuplicates Tracking 3478 as yet unmatched pairs. 56 records in RAM.
INFO 2026-06-08 09:02:48 MarkDuplicates Read 638,000,000 records. Elapsed time: 00:21:11s. Time for last 1,000,000: 1s. Last read position: KI270733.1:131,009
INFO 2026-06-08 09:02:48 MarkDuplicates Tracking 2309 as yet unmatched pairs. 2302 records in RAM.
INFO 2026-06-08 09:02:49 MarkDuplicates Read 639,000,000 records. Elapsed time: 00:21:12s. Time for last 1,000,000: 1s. Last read position: KI270733.1:177,434
INFO 2026-06-08 09:02:49 MarkDuplicates Tracking 28 as yet unmatched pairs. 21 records in RAM.
INFO 2026-06-08 09:02:50 MarkDuplicates Read 639412098 records. 0 pairs never matched.
INFO 2026-06-08 09:03:39 MarkDuplicates After buildSortedReadEndLists freeMemory: 204140568; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:03:39 MarkDuplicates Will retain up to 1987051520 duplicate indices before spilling to disk.
INFO 2026-06-08 09:03:41 MarkDuplicates Traversing read pair information and detecting duplicates.
WARNING 2026-06-08 09:03:41 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 09:04:01 OpticalDuplicateFinder Large duplicate set. size = 1218
INFO 2026-06-08 09:04:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,367
INFO 2026-06-08 09:04:05 OpticalDuplicateFinder Large duplicate set. size = 1324
INFO 2026-06-08 09:04:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,780
INFO 2026-06-08 09:04:34 OpticalDuplicateFinder Large duplicate set. size = 1117
INFO 2026-06-08 09:04:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,549
INFO 2026-06-08 09:04:34 OpticalDuplicateFinder Large duplicate set. size = 1151
INFO 2026-06-08 09:04:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,880
INFO 2026-06-08 09:04:35 OpticalDuplicateFinder Large duplicate set. size = 1314
INFO 2026-06-08 09:04:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,590
INFO 2026-06-08 09:04:35 OpticalDuplicateFinder Large duplicate set. size = 1177
INFO 2026-06-08 09:04:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,550
INFO 2026-06-08 09:04:35 OpticalDuplicateFinder Large duplicate set. size = 1673
INFO 2026-06-08 09:04:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,679
INFO 2026-06-08 09:04:50 OpticalDuplicateFinder Large duplicate set. size = 1009
INFO 2026-06-08 09:04:50 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,546
INFO 2026-06-08 09:04:50 OpticalDuplicateFinder Large duplicate set. size = 1178
INFO 2026-06-08 09:04:50 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,729
INFO 2026-06-08 09:04:51 OpticalDuplicateFinder Large duplicate set. size = 1128
INFO 2026-06-08 09:04:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,758
INFO 2026-06-08 09:04:51 OpticalDuplicateFinder Large duplicate set. size = 1185
INFO 2026-06-08 09:04:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,483
INFO 2026-06-08 09:04:51 OpticalDuplicateFinder Large duplicate set. size = 1447
INFO 2026-06-08 09:04:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,638
INFO 2026-06-08 09:04:51 OpticalDuplicateFinder Large duplicate set. size = 1449
INFO 2026-06-08 09:04:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,510
INFO 2026-06-08 09:04:51 OpticalDuplicateFinder Large duplicate set. size = 1018
INFO 2026-06-08 09:04:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,985
INFO 2026-06-08 09:04:51 OpticalDuplicateFinder Large duplicate set. size = 1336
INFO 2026-06-08 09:04:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,838
INFO 2026-06-08 09:04:51 OpticalDuplicateFinder Large duplicate set. size = 1097
INFO 2026-06-08 09:04:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,548
INFO 2026-06-08 09:04:51 OpticalDuplicateFinder Large duplicate set. size = 1110
INFO 2026-06-08 09:04:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,055
INFO 2026-06-08 09:04:51 OpticalDuplicateFinder Large duplicate set. size = 1271
INFO 2026-06-08 09:04:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,965
INFO 2026-06-08 09:04:51 OpticalDuplicateFinder Large duplicate set. size = 1487
INFO 2026-06-08 09:04:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,204
INFO 2026-06-08 09:04:51 OpticalDuplicateFinder Large duplicate set. size = 2098
INFO 2026-06-08 09:04:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,057
INFO 2026-06-08 09:04:51 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,844
INFO 2026-06-08 09:04:51 OpticalDuplicateFinder Large duplicate set. size = 1342
INFO 2026-06-08 09:04:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,033
INFO 2026-06-08 09:04:51 OpticalDuplicateFinder Large duplicate set. size = 1655
INFO 2026-06-08 09:04:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,720
INFO 2026-06-08 09:04:52 OpticalDuplicateFinder Large duplicate set. size = 1386
INFO 2026-06-08 09:04:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,929
INFO 2026-06-08 09:04:52 OpticalDuplicateFinder Large duplicate set. size = 1103
INFO 2026-06-08 09:04:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,300
INFO 2026-06-08 09:04:52 OpticalDuplicateFinder Large duplicate set. size = 1424
INFO 2026-06-08 09:04:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,215
INFO 2026-06-08 09:05:07 MarkDuplicates Traversing fragment information and detecting duplicates.
WARNING 2026-06-08 09:05:07 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 09:06:12 MarkDuplicates Sorting list of duplicate records.
INFO 2026-06-08 09:06:17 MarkDuplicates After generateDuplicateIndexes freeMemory: 203947512; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:06:17 MarkDuplicates Marking 347953473 records as duplicates.
INFO 2026-06-08 09:06:17 MarkDuplicates Found 18756067 optical duplicate clusters.
INFO 2026-06-08 09:06:17 MarkDuplicates Reads are assumed to be ordered by: coordinate
INFO 2026-06-08 09:06:34 MarkDuplicates Written 10,000,000 records. Elapsed time: 00:00:17s. Time for last 10,000,000: 17s. Last read position: chr1:21,828,079
INFO 2026-06-08 09:06:51 MarkDuplicates Written 20,000,000 records. Elapsed time: 00:00:34s. Time for last 10,000,000: 16s. Last read position: chr1:36,461,302
INFO 2026-06-08 09:07:08 MarkDuplicates Written 30,000,000 records. Elapsed time: 00:00:51s. Time for last 10,000,000: 17s. Last read position: chr1:93,114,712
INFO 2026-06-08 09:07:26 MarkDuplicates Written 40,000,000 records. Elapsed time: 00:01:08s. Time for last 10,000,000: 17s. Last read position: chr1:150,733,018
INFO 2026-06-08 09:07:43 MarkDuplicates Written 50,000,000 records. Elapsed time: 00:01:26s. Time for last 10,000,000: 17s. Last read position: chr1:169,131,314
INFO 2026-06-08 09:08:00 MarkDuplicates Written 60,000,000 records. Elapsed time: 00:01:43s. Time for last 10,000,000: 17s. Last read position: chr1:230,688,473
INFO 2026-06-08 09:08:17 MarkDuplicates Written 70,000,000 records. Elapsed time: 00:02:00s. Time for last 10,000,000: 17s. Last read position: chr2:32,916,406
INFO 2026-06-08 09:08:34 MarkDuplicates Written 80,000,000 records. Elapsed time: 00:02:17s. Time for last 10,000,000: 17s. Last read position: chr2:95,047,986
INFO 2026-06-08 09:08:51 MarkDuplicates Written 90,000,000 records. Elapsed time: 00:02:34s. Time for last 10,000,000: 17s. Last read position: chr2:177,521,332
INFO 2026-06-08 09:09:09 MarkDuplicates Written 100,000,000 records. Elapsed time: 00:02:52s. Time for last 10,000,000: 17s. Last read position: chr2:215,406,251
INFO 2026-06-08 09:09:26 MarkDuplicates Written 110,000,000 records. Elapsed time: 00:03:09s. Time for last 10,000,000: 17s. Last read position: chr2:241,126,385
INFO 2026-06-08 09:09:43 MarkDuplicates Written 120,000,000 records. Elapsed time: 00:03:26s. Time for last 10,000,000: 17s. Last read position: chr3:49,024,787
INFO 2026-06-08 09:10:00 MarkDuplicates Written 130,000,000 records. Elapsed time: 00:03:43s. Time for last 10,000,000: 17s. Last read position: chr3:128,055,539
INFO 2026-06-08 09:10:17 MarkDuplicates Written 140,000,000 records. Elapsed time: 00:04:00s. Time for last 10,000,000: 17s. Last read position: chr4:1,024,597
INFO 2026-06-08 09:10:35 MarkDuplicates Written 150,000,000 records. Elapsed time: 00:04:18s. Time for last 10,000,000: 17s. Last read position: chr4:101,195,981
INFO 2026-06-08 09:10:52 MarkDuplicates Written 160,000,000 records. Elapsed time: 00:04:35s. Time for last 10,000,000: 17s. Last read position: chr5:60,743,785
INFO 2026-06-08 09:11:10 MarkDuplicates Written 170,000,000 records. Elapsed time: 00:04:53s. Time for last 10,000,000: 17s. Last read position: chr5:142,314,620
INFO 2026-06-08 09:11:27 MarkDuplicates Written 180,000,000 records. Elapsed time: 00:05:10s. Time for last 10,000,000: 17s. Last read position: chr6:7,230,761
INFO 2026-06-08 09:11:44 MarkDuplicates Written 190,000,000 records. Elapsed time: 00:05:27s. Time for last 10,000,000: 17s. Last read position: chr6:31,412,202
INFO 2026-06-08 09:12:01 MarkDuplicates Written 200,000,000 records. Elapsed time: 00:05:44s. Time for last 10,000,000: 17s. Last read position: chr6:52,403,441
INFO 2026-06-08 09:12:19 MarkDuplicates Written 210,000,000 records. Elapsed time: 00:06:02s. Time for last 10,000,000: 17s. Last read position: chr6:158,770,868
INFO 2026-06-08 09:12:36 MarkDuplicates Written 220,000,000 records. Elapsed time: 00:06:19s. Time for last 10,000,000: 17s. Last read position: chr7:36,443,782
INFO 2026-06-08 09:12:55 MarkDuplicates Written 230,000,000 records. Elapsed time: 00:06:38s. Time for last 10,000,000: 19s. Last read position: chr7:98,291,165
INFO 2026-06-08 09:13:12 MarkDuplicates Written 240,000,000 records. Elapsed time: 00:06:55s. Time for last 10,000,000: 17s. Last read position: chr7:144,365,707
INFO 2026-06-08 09:13:30 MarkDuplicates Written 250,000,000 records. Elapsed time: 00:07:13s. Time for last 10,000,000: 17s. Last read position: chr8:47,943,244
INFO 2026-06-08 09:13:47 MarkDuplicates Written 260,000,000 records. Elapsed time: 00:07:30s. Time for last 10,000,000: 17s. Last read position: chr8:143,860,716
INFO 2026-06-08 09:14:04 MarkDuplicates Written 270,000,000 records. Elapsed time: 00:07:47s. Time for last 10,000,000: 17s. Last read position: chr9:35,689,764
INFO 2026-06-08 09:14:22 MarkDuplicates Written 280,000,000 records. Elapsed time: 00:08:04s. Time for last 10,000,000: 17s. Last read position: chr9:127,506,768
INFO 2026-06-08 09:14:40 MarkDuplicates Written 290,000,000 records. Elapsed time: 00:08:22s. Time for last 10,000,000: 17s. Last read position: chr10:5,735,307
INFO 2026-06-08 09:14:57 MarkDuplicates Written 300,000,000 records. Elapsed time: 00:08:39s. Time for last 10,000,000: 17s. Last read position: chr10:87,051,853
INFO 2026-06-08 09:15:14 MarkDuplicates Written 310,000,000 records. Elapsed time: 00:08:57s. Time for last 10,000,000: 17s. Last read position: chr11:592,598
INFO 2026-06-08 09:15:31 MarkDuplicates Written 320,000,000 records. Elapsed time: 00:09:14s. Time for last 10,000,000: 16s. Last read position: chr11:47,424,100
INFO 2026-06-08 09:15:47 MarkDuplicates Written 330,000,000 records. Elapsed time: 00:09:30s. Time for last 10,000,000: 16s. Last read position: chr11:65,655,733
INFO 2026-06-08 09:16:04 MarkDuplicates Written 340,000,000 records. Elapsed time: 00:09:47s. Time for last 10,000,000: 16s. Last read position: chr11:102,227,503
INFO 2026-06-08 09:16:22 MarkDuplicates Written 350,000,000 records. Elapsed time: 00:10:04s. Time for last 10,000,000: 17s. Last read position: chr12:6,981,026
INFO 2026-06-08 09:16:39 MarkDuplicates Written 360,000,000 records. Elapsed time: 00:10:22s. Time for last 10,000,000: 17s. Last read position: chr12:52,904,692
INFO 2026-06-08 09:16:56 MarkDuplicates Written 370,000,000 records. Elapsed time: 00:10:39s. Time for last 10,000,000: 17s. Last read position: chr12:68,746,493
INFO 2026-06-08 09:17:14 MarkDuplicates Written 380,000,000 records. Elapsed time: 00:10:57s. Time for last 10,000,000: 17s. Last read position: chr12:122,130,043
INFO 2026-06-08 09:17:31 MarkDuplicates Written 390,000,000 records. Elapsed time: 00:11:14s. Time for last 10,000,000: 17s. Last read position: chr13:110,164,944
INFO 2026-06-08 09:17:49 MarkDuplicates Written 400,000,000 records. Elapsed time: 00:11:32s. Time for last 10,000,000: 17s. Last read position: chr14:64,541,564
INFO 2026-06-08 09:18:06 MarkDuplicates Written 410,000,000 records. Elapsed time: 00:11:49s. Time for last 10,000,000: 17s. Last read position: chr14:105,625,772
INFO 2026-06-08 09:18:23 MarkDuplicates Written 420,000,000 records. Elapsed time: 00:12:06s. Time for last 10,000,000: 17s. Last read position: chr15:58,184,348
INFO 2026-06-08 09:18:40 MarkDuplicates Written 430,000,000 records. Elapsed time: 00:12:23s. Time for last 10,000,000: 17s. Last read position: chr15:92,286,135
INFO 2026-06-08 09:18:57 MarkDuplicates Written 440,000,000 records. Elapsed time: 00:12:40s. Time for last 10,000,000: 17s. Last read position: chr16:15,133,403
INFO 2026-06-08 09:19:14 MarkDuplicates Written 450,000,000 records. Elapsed time: 00:12:57s. Time for last 10,000,000: 17s. Last read position: chr16:30,195,003
INFO 2026-06-08 09:19:31 MarkDuplicates Written 460,000,000 records. Elapsed time: 00:13:14s. Time for last 10,000,000: 17s. Last read position: chr16:71,649,253
INFO 2026-06-08 09:19:48 MarkDuplicates Written 470,000,000 records. Elapsed time: 00:13:31s. Time for last 10,000,000: 16s. Last read position: chr17:5,386,205
INFO 2026-06-08 09:20:05 MarkDuplicates Written 480,000,000 records. Elapsed time: 00:13:48s. Time for last 10,000,000: 17s. Last read position: chr17:35,021,410
INFO 2026-06-08 09:20:22 MarkDuplicates Written 490,000,000 records. Elapsed time: 00:14:05s. Time for last 10,000,000: 16s. Last read position: chr17:46,938,557
INFO 2026-06-08 09:20:39 MarkDuplicates Written 500,000,000 records. Elapsed time: 00:14:22s. Time for last 10,000,000: 16s. Last read position: chr17:50,192,831
INFO 2026-06-08 09:20:56 MarkDuplicates Written 510,000,000 records. Elapsed time: 00:14:39s. Time for last 10,000,000: 16s. Last read position: chr17:59,661,460
INFO 2026-06-08 09:21:14 MarkDuplicates Written 520,000,000 records. Elapsed time: 00:14:57s. Time for last 10,000,000: 18s. Last read position: chr17:81,103,966
INFO 2026-06-08 09:21:31 MarkDuplicates Written 530,000,000 records. Elapsed time: 00:15:14s. Time for last 10,000,000: 17s. Last read position: chr18:79,973,658
INFO 2026-06-08 09:21:48 MarkDuplicates Written 540,000,000 records. Elapsed time: 00:15:31s. Time for last 10,000,000: 17s. Last read position: chr19:7,519,952
INFO 2026-06-08 09:22:06 MarkDuplicates Written 550,000,000 records. Elapsed time: 00:15:49s. Time for last 10,000,000: 17s. Last read position: chr19:15,424,270
INFO 2026-06-08 09:22:23 MarkDuplicates Written 560,000,000 records. Elapsed time: 00:16:05s. Time for last 10,000,000: 16s. Last read position: chr19:39,408,082
INFO 2026-06-08 09:22:39 MarkDuplicates Written 570,000,000 records. Elapsed time: 00:16:22s. Time for last 10,000,000: 16s. Last read position: chr19:49,015,628
INFO 2026-06-08 09:22:56 MarkDuplicates Written 580,000,000 records. Elapsed time: 00:16:39s. Time for last 10,000,000: 16s. Last read position: chr20:6,094,950
INFO 2026-06-08 09:23:13 MarkDuplicates Written 590,000,000 records. Elapsed time: 00:16:56s. Time for last 10,000,000: 17s. Last read position: chr20:58,909,413
INFO 2026-06-08 09:23:30 MarkDuplicates Written 600,000,000 records. Elapsed time: 00:17:12s. Time for last 10,000,000: 16s. Last read position: chr21:41,494,485
INFO 2026-06-08 09:23:46 MarkDuplicates Written 610,000,000 records. Elapsed time: 00:17:29s. Time for last 10,000,000: 16s. Last read position: chr22:31,715,491
INFO 2026-06-08 09:24:05 MarkDuplicates Written 620,000,000 records. Elapsed time: 00:17:48s. Time for last 10,000,000: 18s. Last read position: chrX:2,489,331
INFO 2026-06-08 09:24:22 MarkDuplicates Written 630,000,000 records. Elapsed time: 00:18:05s. Time for last 10,000,000: 17s. Last read position: chrX:120,254,011
INFO 2026-06-08 09:24:39 MarkDuplicates Written 640,000,000 records. Elapsed time: 00:18:21s. Time for last 10,000,000: 16s. Last read position: */*
INFO 2026-06-08 09:24:44 MarkDuplicates Writing complete. Closing input iterator.
INFO 2026-06-08 09:24:44 MarkDuplicates Duplicate Index cleanup.
INFO 2026-06-08 09:24:44 MarkDuplicates Getting Memory Stats.
INFO 2026-06-08 09:24:44 MarkDuplicates Before output close freeMemory: 203936632; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:24:44 MarkDuplicates Closed outputs. Getting more Memory Stats.
INFO 2026-06-08 09:24:44 MarkDuplicates After output close freeMemory: 104161304; totalMemory: 134217728; maxMemory: 63585648640
[Mon Jun 08 09:24:44 GMT 2026] picard.sam.markduplicates.MarkDuplicates done. Elapsed time: 43.16 minutes.
Runtime.totalMemory()=134217728
Tool returned:
0
ls: *cram: No such file or directory
ls: *.crai: No such file or directory