File Info

Filename
fi_workdir/Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/49/01a6e8c690b1b8896cea02eb181ef2/fi_workdir/Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 10:17:12
                             Started mapping on |	Jun 08 10:23:46
                                    Finished on |	Jun 08 11:25:06
       Mapping speed, Million of reads per hour |	289.71

                          Number of input reads |	296148083
                      Average input read length |	263
                                    UNIQUE READS:
                   Uniquely mapped reads number |	280433496
                        Uniquely mapped reads % |	94.69%
                          Average mapped length |	262.89
                       Number of splices: Total |	356853504
            Number of splices: Annotated (sjdb) |	350887527
                       Number of splices: GT/AG |	352733888
                       Number of splices: GC/AG |	2379138
                       Number of splices: AT/AC |	255520
               Number of splices: Non-canonical |	1484958
                      Mismatch rate per base, % |	0.21%
                         Deletion rate per base |	0.03%
                        Deletion average length |	2.08
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.56
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	12143521
             % of reads mapped to multiple loci |	4.10%
        Number of reads mapped to too many loci |	517293
             % of reads mapped to too many loci |	0.17%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	0
       % of reads unmapped: too many mismatches |	0.00%
            Number of reads unmapped: too short |	2710316
                 % of reads unmapped: too short |	0.92%
                Number of reads unmapped: other |	343457
                     % of reads unmapped: other |	0.12%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%