Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8b/edc90179d880f4dd82b77f5a60bdee/tih_rna_sample_00598_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/61/74a5d65eed225a873583bdbac00f61/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/61/74a5d65eed225a873583bdbac00f61/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6f/3a629bdeef588d9d7d8be6eacf91b0/tih_rna_sample_00598_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (4 inputs)

[W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00598_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai
Load BAM file ...  Done
report duplicte rate based on sequence ...
report duplicte rate based on mapping  ...
generate R script ...
null device 
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