Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/04/97aae6c4ac77c4bdf6f9180de0c8d5/tih_rna_sample_00584_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f8/e88fd7fc7045f143707b3a331bf8bc/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/38/14436471d17091b5225f1f2a54de3d/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/38/14436471d17091b5225f1f2a54de3d/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/71/b4dbc69e53e388a11fbdb3e8c95a30/tih_rna_sample_00584_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 25897642
[W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00584_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	25897642
Known Splicing Events:	25597653
Partial Novel Splicing Events:	171246
Novel Splicing Events:	112864
Filtered Splicing Events:	15879

Total splicing  Junctions:	177528
Known Splicing Junctions:	156906
Partial Novel Splicing Junctions:	12545
Novel Splicing Junctions:	8077

===================================================================
Create BED file ...
Create Interact file ...