File Info

Filename
fi_workdir/Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bb/ecb294e0c4d1c8391fb8921fcaaf02/fi_workdir/Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 09:16:21
                             Started mapping on |	Jun 08 09:22:40
                                    Finished on |	Jun 08 09:53:58
       Mapping speed, Million of reads per hour |	296.78

                          Number of input reads |	154820398
                      Average input read length |	227
                                    UNIQUE READS:
                   Uniquely mapped reads number |	147675585
                        Uniquely mapped reads % |	95.39%
                          Average mapped length |	226.43
                       Number of splices: Total |	139078468
            Number of splices: Annotated (sjdb) |	136777724
                       Number of splices: GT/AG |	137200443
                       Number of splices: GC/AG |	853577
                       Number of splices: AT/AC |	78434
               Number of splices: Non-canonical |	946014
                      Mismatch rate per base, % |	0.25%
                         Deletion rate per base |	0.04%
                        Deletion average length |	2.19
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.60
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	4965663
             % of reads mapped to multiple loci |	3.21%
        Number of reads mapped to too many loci |	412711
             % of reads mapped to too many loci |	0.27%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	0
       % of reads unmapped: too many mismatches |	0.00%
            Number of reads unmapped: too short |	1470168
                 % of reads unmapped: too short |	0.95%
                Number of reads unmapped: other |	296271
                     % of reads unmapped: other |	0.19%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%