Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fe/f57a5c37e857bfb61a38e5aa193a62/FFPE_HD789_01_RNA_13_B23MVV7LT4_1.star_alignment.Aligned.sortedByCoord.out.cram
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ac/4baaa069dda40d84eb9ebf0bbe257e/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ac/4baaa069dda40d84eb9ebf0bbe257e/.command.run
==> STAGING COMPLETE (3 inputs)

ls: *.bai: No such file or directory
ls: *.csi: No such file or directory