File Info

Filename
fi_workdir/Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d5/70fc10f7a6ba3e7f7823b132def5df/fi_workdir/Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 10:05:56
                             Started mapping on |	Jun 08 10:12:28
                                    Finished on |	Jun 08 11:22:09
       Mapping speed, Million of reads per hour |	213.22

                          Number of input reads |	247632869
                      Average input read length |	234
                                    UNIQUE READS:
                   Uniquely mapped reads number |	238414418
                        Uniquely mapped reads % |	96.28%
                          Average mapped length |	232.60
                       Number of splices: Total |	314983935
            Number of splices: Annotated (sjdb) |	310722723
                       Number of splices: GT/AG |	311406402
                       Number of splices: GC/AG |	1419154
                       Number of splices: AT/AC |	130858
               Number of splices: Non-canonical |	2027521
                      Mismatch rate per base, % |	0.22%
                         Deletion rate per base |	0.04%
                        Deletion average length |	2.20
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.56
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	5775018
             % of reads mapped to multiple loci |	2.33%
        Number of reads mapped to too many loci |	184547
             % of reads mapped to too many loci |	0.07%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	0
       % of reads unmapped: too many mismatches |	0.00%
            Number of reads unmapped: too short |	2942651
                 % of reads unmapped: too short |	1.19%
                Number of reads unmapped: other |	316235
                     % of reads unmapped: other |	0.13%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%