File Info

Filename
fi_workdir/Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/16/db06508b6252a3f9d4a4bec5b2eb2a/fi_workdir/Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 09:54:05
                             Started mapping on |	Jun 08 10:00:41
                                    Finished on |	Jun 08 10:53:18
       Mapping speed, Million of reads per hour |	273.44

                          Number of input reads |	239789527
                      Average input read length |	243
                                    UNIQUE READS:
                   Uniquely mapped reads number |	231647796
                        Uniquely mapped reads % |	96.60%
                          Average mapped length |	242.47
                       Number of splices: Total |	253587983
            Number of splices: Annotated (sjdb) |	249436038
                       Number of splices: GT/AG |	249753877
                       Number of splices: GC/AG |	2111171
                       Number of splices: AT/AC |	194872
               Number of splices: Non-canonical |	1528063
                      Mismatch rate per base, % |	0.21%
                         Deletion rate per base |	0.04%
                        Deletion average length |	2.30
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.55
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	5451309
             % of reads mapped to multiple loci |	2.27%
        Number of reads mapped to too many loci |	289962
             % of reads mapped to too many loci |	0.12%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	0
       % of reads unmapped: too many mismatches |	0.00%
            Number of reads unmapped: too short |	2202324
                 % of reads unmapped: too short |	0.92%
                Number of reads unmapped: other |	198136
                     % of reads unmapped: other |	0.08%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%