Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c1/ec99de83693180e9ce2a981a625041/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/05/358042018d33530932b1c9d34313a0/tih_rna_sample_00594_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c1/ec99de83693180e9ce2a981a625041/.command.run
==> STAGING COMPLETE (3 inputs)

PAIRED_END_BAM_INPUT
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paired = 292569239
unpaired = 5336606
MERGED PAIRED END READS = 292569239
MATES PROCESSED = 590475084
TOTAL READS     = 297905845
DISTINCT READS  = 1.4826e+08
DISTINCT COUNTS = 913
MAX COUNT       = 1271078
COUNTS OF 1     = 8.62072e+07
MAX TERMS       = 100
OBSERVED COUNTS (1271079)
1	86207206
2	32846464
3	13845124
4	6428665
5	3273440
6	1808995
7	1071738
8	676702
9	449698
10	312699
11	228068
12	169534
13	130884
14	103604
15	83215
16	68361
17	57160
18	47736
19	40741
20	35107
21	30115
22	26815
23	23514
24	20853
25	18644
26	16432
27	14743
28	13658
29	12335
30	11239
31	10059
32	9493
33	8631
34	7893
35	7292
36	6920
37	6295
38	5791
39	5399
40	5158
41	4802
42	4475
43	4210
44	3789
45	3650
46	3520
47	3256
48	3098
49	2913
50	2801
51	2533
52	2492
53	2379
54	2332
55	2027
56	2111
57	2006
58	1855
59	1755
60	1606
61	1644
62	1507
63	1439
64	1442
65	1309
66	1270
67	1294
68	1232
69	1237
70	1147
71	1054
72	1015
73	996
74	989
75	961
76	950
77	847
78	841
79	824
80	810
81	742
82	723
83	734
84	651
85	654
86	665
87	614
88	598
89	588
90	533
91	544
92	536
93	517
94	535
95	478
96	436
97	477
98	424
99	462
100	405
101	369
102	433
103	351
104	385
105	372
106	355
107	378
108	342
109	345
110	345
111	302
112	278
113	294
114	289
115	312
116	265
117	262
118	247
119	264
120	276
121	226
122	255
123	234
124	240
125	207
126	227
127	203
128	207
129	221
130	203
131	190
132	188
133	202
134	166
135	183
136	175
137	176
138	165
139	176
140	152
141	160
142	181
143	153
144	141
145	146
146	162
147	150
148	126
149	148
150	154
151	124
152	125
153	120
154	134
155	127
156	116
157	138
158	123
159	112
160	115
161	100
162	106
163	115
164	106
165	107
166	126
167	119
168	107
169	88
170	93
171	85
172	108
173	82
174	76
175	96
176	70
177	88
178	76
179	86
180	88
181	92
182	71
183	75
184	60
185	80
186	64
187	63
188	66
189	76
190	55
191	68
192	73
193	62
194	74
195	71
196	64
197	56
198	61
199	62
200	50
201	73
202	61
203	62
204	54
205	60
206	57
207	47
208	41
209	49
210	54
211	49
212	60
213	43
214	50
215	42
216	53
217	35
218	48
219	37
220	47
221	50
222	33
223	39
224	35
225	46
226	45
227	47
228	45
229	47
230	43
231	42
232	48
233	40
234	47
235	31
236	32
237	39
238	30
239	30
240	38
241	50
242	37
243	34
244	39
245	31
246	25
247	33
248	33
249	26
250	34
251	24
252	27
253	31
254	43
255	27
256	30
257	30
258	26
259	36
260	23
261	21
262	23
263	18
264	30
265	31
266	24
267	17
268	20
269	27
270	27
271	24
272	28
273	19
274	23
275	29
276	30
277	15
278	30
279	30
280	27
281	15
282	19
283	27
284	20
285	22
286	15
287	15
288	19
289	21
290	14
291	13
292	13
293	11
294	20
295	16
296	13
297	32
298	15
299	14
300	9
301	12
302	16
303	21
304	17
305	15
306	8
307	12
308	16
309	17
310	14
311	15
312	9
313	9
314	13
315	9
316	12
317	11
318	13
319	19
320	13
321	16
322	11
323	11
324	14
325	12
326	15
327	12
328	10
329	11
330	13
331	10
332	14
333	10
334	12
335	13
336	15
337	14
338	10
339	14
340	17
341	10
342	12
343	7
344	7
345	15
346	5
347	11
348	11
349	9
350	10
351	13
352	8
353	8
354	12
355	10
356	6
357	7
358	9
359	7
360	10
361	7
362	11
363	9
364	9
365	9
366	11
367	7
368	15
369	11
370	10
371	11
372	6
373	3
374	5
375	7
376	13
377	11
378	8
379	6
380	9
381	13
382	9
383	9
384	9
385	7
386	11
387	6
388	5
389	9
390	3
391	8
392	10
393	10
394	5
395	7
396	8
397	7
398	8
399	5
400	2
401	8
402	7
403	5
404	8
405	4
406	4
407	5
408	12
409	10
410	5
411	2
412	6
413	5
414	6
415	6
416	6
417	7
418	7
419	8
420	12
421	8
422	6
423	8
424	9
426	7
427	5
428	3
429	5
430	2
431	8
432	8
433	6
434	9
435	5
436	3
437	6
438	1
439	6
440	4
441	5
442	5
443	5
444	6
445	6
446	8
447	5
448	5
449	2
450	3
451	4
452	3
453	7
454	5
455	4
456	2
457	6
458	6
459	4
460	4
461	10
462	3
463	3
464	7
465	1
466	6
467	3
468	5
469	3
470	5
471	4
472	6
473	4
474	1
475	5
476	2
477	8
478	4
479	4
480	5
481	2
482	3
483	2
484	3
485	4
486	3
487	5
488	2
489	3
490	3
491	3
492	4
493	4
494	3
495	4
496	2
497	4
498	5
499	3
500	1
501	1
502	3
503	6
504	5
505	1
506	6
507	2
508	3
509	6
510	4
511	3
512	3
513	11
514	2
515	1
516	3
517	3
518	1
520	1
521	4
522	4
524	4
525	2
526	5
528	4
529	3
530	1
531	3
532	2
533	2
534	2
535	1
537	2
538	2
539	4
540	4
542	4
543	3
544	4
545	6
546	1
547	1
548	1
550	1
551	5
552	3
553	2
554	4
555	2
556	3
557	1
558	2
560	1
561	3
562	2
563	2
564	1
565	3
566	3
567	2
568	4
569	1
570	2
572	3
573	1
574	4
575	1
577	1
578	2
579	6
580	1
582	4
583	3
584	2
587	1
589	2
590	1
591	3
592	1
596	3
597	3
598	2
600	1
602	1
603	1
604	1
607	1
609	3
610	4
611	1
612	1
613	1
614	1
616	1
618	1
619	3
620	1
621	4
623	3
624	3
625	1
626	1
627	2
628	2
629	2
630	2
631	1
633	4
634	1
635	1
637	3
638	3
640	1
641	1
642	2
643	2
644	1
647	1
648	2
649	1
650	3
651	1
652	1
653	2
655	1
657	1
658	2
659	2
661	2
664	1
665	1
666	2
668	2
670	2
671	2
672	2
674	1
675	2
676	2
677	1
678	1
679	1
680	2
683	1
686	1
687	1
688	1
689	1
690	1
691	2
692	2
697	1
698	2
699	1
701	1
702	2
703	1
704	1
706	2
707	1
710	2
711	1
714	1
716	2
717	1
718	1
720	1
726	2
727	1
730	1
732	1
737	1
738	1
740	1
741	1
742	1
743	1
744	1
746	2
750	1
751	1
752	3
754	2
755	1
757	3
758	1
761	1
765	1
768	1
770	1
772	1
773	1
774	1
776	1
778	1
779	1
787	1
791	1
792	1
793	1
794	1
795	1
796	1
797	1
801	1
805	1
809	1
812	1
814	1
815	1
817	1
819	2
822	1
826	2
828	2
829	3
832	2
835	1
837	2
840	5
841	1
844	1
848	1
850	1
853	1
855	1
856	1
858	2
862	1
864	1
865	1
866	2
871	1
873	1
874	1
876	1
879	1
881	1
882	2
885	2
886	1
888	1
898	1
903	1
905	1
906	1
909	1
910	1
912	1
918	1
922	2
923	1
930	1
932	1
933	1
935	1
936	1
940	1
942	2
955	1
956	2
965	1
967	1
972	1
983	1
984	1
985	1
989	1
996	1
998	1
999	1
1002	1
1003	1
1008	1
1012	1
1014	1
1016	1
1017	1
1036	1
1043	1
1061	1
1065	1
1067	2
1068	1
1069	1
1072	1
1075	1
1083	3
1090	1
1099	1
1100	1
1102	1
1116	1
1117	1
1122	1
1133	1
1163	2
1169	1
1171	1
1177	1
1181	1
1202	1
1221	1
1227	1
1238	1
1240	1
1249	1
1264	1
1279	1
1280	1
1291	1
1294	1
1301	1
1321	1
1344	1
1370	1
1391	1
1395	1
1397	1
1404	1
1430	1
1437	1
1441	1
1455	1
1547	1
1604	1
1654	1
1711	1
1715	1
1743	1
1748	1
1750	1
1787	1
1797	1
1823	1
1834	1
1846	1
1849	1
1858	1
1863	2
1869	1
1877	1
1885	1
1891	1
1899	1
1907	1
1910	1
1916	1
1925	1
1929	1
1943	1
1950	1
1967	1
1977	1
1982	1
1997	2
2001	1
2040	1
2064	1
2118	1
2124	1
2154	1
2193	1
2206	1
2225	2
2235	1
2243	1
2264	2
2284	1
2286	1
2292	1
2295	1
2300	1
2305	1
2318	1
2344	1
2350	1
2354	1
2362	1
2408	1
2454	1
2458	1
2462	1
2602	1
2651	1
2698	1
2702	1
2718	1
2738	1
2748	1
2755	1
2769	1
2801	1
2881	1
2917	1
3103	1
3123	1
3224	1
3295	1
3335	1
3543	1
3608	1
3833	1
3967	1
4265	1
4656	1
5174	1
5473	1
7305	1
7783	1
10652	1
12691	1
28963	1
1271078	1

[ESTIMATING YIELD CURVE]
[BOOTSTRAPPING HISTOGRAM]
.........._....._......._._........_........_.._._.___.._....._.........
__......._.........._...._...____........__.........
[COMPUTING CONFIDENCE INTERVALS]
[WRITING OUTPUT]