Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f8/e88fd7fc7045f143707b3a331bf8bc/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/57/7eafc5b1dd37cf7f8a08b6d305adc5/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/57/7eafc5b1dd37cf7f8a08b6d305adc5/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e3/4180c47a93835431d059aed33cc9dc/tih_rna_sample_00596_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/08/d352a80c2b869749f08decd2043de4/tih_rna_sample_00596_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (5 inputs)

[W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00596_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai
reading reference bed file:  ref_annot.bed  ...  Done! Total 386135 known splicing junctions.
Load BAM file ...  Done
shuffling alignments ... Done
sampling 5% (15973763) splicing reads. 286938 splicing junctions. 194156 known splicing junctions. 92782 novel splicing junctions.
sampling 10% (31947526) splicing reads. 350144 splicing junctions. 206382 known splicing junctions. 143762 novel splicing junctions.
sampling 15% (47921289) splicing reads. 392795 splicing junctions. 212611 known splicing junctions. 180184 novel splicing junctions.
sampling 20% (63895052) splicing reads. 424624 splicing junctions. 216624 known splicing junctions. 208000 novel splicing junctions.
sampling 25% (79868815) splicing reads. 449282 splicing junctions. 219295 known splicing junctions. 229987 novel splicing junctions.
sampling 30% (95842578) splicing reads. 469539 splicing junctions. 221425 known splicing junctions. 248114 novel splicing junctions.
sampling 35% (111816341) splicing reads. 486126 splicing junctions. 223059 known splicing junctions. 263067 novel splicing junctions.
sampling 40% (127790104) splicing reads. 499868 splicing junctions. 224308 known splicing junctions. 275560 novel splicing junctions.
sampling 45% (143763867) splicing reads. 511658 splicing junctions. 225356 known splicing junctions. 286302 novel splicing junctions.
sampling 50% (159737631) splicing reads. 521921 splicing junctions. 226254 known splicing junctions. 295667 novel splicing junctions.
sampling 55% (175711394) splicing reads. 530629 splicing junctions. 226987 known splicing junctions. 303642 novel splicing junctions.
sampling 60% (191685157) splicing reads. 538311 splicing junctions. 227561 known splicing junctions. 310750 novel splicing junctions.
sampling 65% (207658920) splicing reads. 544803 splicing junctions. 228084 known splicing junctions. 316719 novel splicing junctions.
sampling 70% (223632683) splicing reads. 550377 splicing junctions. 228533 known splicing junctions. 321844 novel splicing junctions.
sampling 75% (239606446) splicing reads. 555270 splicing junctions. 228930 known splicing junctions. 326340 novel splicing junctions.
sampling 80% (255580209) splicing reads. 559418 splicing junctions. 229252 known splicing junctions. 330166 novel splicing junctions.
sampling 85% (271553972) splicing reads. 562774 splicing junctions. 229484 known splicing junctions. 333290 novel splicing junctions.
sampling 90% (287527735) splicing reads. 565618 splicing junctions. 229701 known splicing junctions. 335917 novel splicing junctions.
sampling 95% (303501498) splicing reads. 567876 splicing junctions. 229859 known splicing junctions. 338017 novel splicing junctions.
sampling 100% (319475262) splicing reads. 569591 splicing junctions. 230008 known splicing junctions. 339583 novel splicing junctions.
null device 
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