Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8b/a7db4c2c58d56ff5f10441cb1f1b5c/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8b/a7db4c2c58d56ff5f10441cb1f1b5c/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f8/b005ec650673d11d28d9f5cb516ee2/tih_rna_sample_00666_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/86/7b5670466e079fd42c8e0b6762e328/tih_rna_sample_00666_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (5 inputs)

ls: *.sam: No such file or directory
ls: *.csi: No such file or directory
ls: *.crai: No such file or directory