Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/66/ddfcbb0693bc896de23657a14f3eb3/tih_rna_sample_00586_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a9/2dd8d02c683670fa9b5b903dbd3cfe/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cb/8c295ff11ad8ede9fdedb3bbb32497/tih_rna_sample_00586_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a9/2dd8d02c683670fa9b5b903dbd3cfe/.command.run
==> STAGING COMPLETE (4 inputs)

[W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00586_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai
Load BAM file ...  Done
report duplicte rate based on sequence ...
report duplicte rate based on mapping  ...
generate R script ...
null device 
          1