Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/92/00b0020c7842118c0f33bf86f2bf8b/tih_rna_sample_00576_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8c/0af3b1034ae1e19ded8c193cff3251/tih_rna_sample_00576_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f8/e88fd7fc7045f143707b3a331bf8bc/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0d/5ac166e71c5134aeae42e0f5264d65/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0d/5ac166e71c5134aeae42e0f5264d65/.command.run
==> STAGING COMPLETE (5 inputs)

[W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00576_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai
reading reference bed file:  ref_annot.bed  ...  Done! Total 386135 known splicing junctions.
Load BAM file ...  Done
shuffling alignments ... Done
sampling 5% (9447072) splicing reads. 231078 splicing junctions. 178201 known splicing junctions. 52877 novel splicing junctions.
sampling 10% (18894145) splicing reads. 274863 splicing junctions. 190773 known splicing junctions. 84090 novel splicing junctions.
sampling 15% (28341217) splicing reads. 304641 splicing junctions. 197344 known splicing junctions. 107297 novel splicing junctions.
sampling 20% (37788290) splicing reads. 327465 splicing junctions. 201769 known splicing junctions. 125696 novel splicing junctions.
sampling 25% (47235362) splicing reads. 345516 splicing junctions. 204857 known splicing junctions. 140659 novel splicing junctions.
sampling 30% (56682435) splicing reads. 360245 splicing junctions. 207186 known splicing junctions. 153059 novel splicing junctions.
sampling 35% (66129507) splicing reads. 372699 splicing junctions. 208998 known splicing junctions. 163701 novel splicing junctions.
sampling 40% (75576580) splicing reads. 383185 splicing junctions. 210475 known splicing junctions. 172710 novel splicing junctions.
sampling 45% (85023652) splicing reads. 392149 splicing junctions. 211726 known splicing junctions. 180423 novel splicing junctions.
sampling 50% (94470725) splicing reads. 399832 splicing junctions. 212744 known splicing junctions. 187088 novel splicing junctions.
sampling 55% (103917797) splicing reads. 406471 splicing junctions. 213541 known splicing junctions. 192930 novel splicing junctions.
sampling 60% (113364870) splicing reads. 412237 splicing junctions. 214218 known splicing junctions. 198019 novel splicing junctions.
sampling 65% (122811942) splicing reads. 417266 splicing junctions. 214864 known splicing junctions. 202402 novel splicing junctions.
sampling 70% (132259014) splicing reads. 421557 splicing junctions. 215407 known splicing junctions. 206150 novel splicing junctions.
sampling 75% (141706087) splicing reads. 425338 splicing junctions. 215834 known splicing junctions. 209504 novel splicing junctions.
sampling 80% (151153160) splicing reads. 428427 splicing junctions. 216208 known splicing junctions. 212219 novel splicing junctions.
sampling 85% (160600232) splicing reads. 430924 splicing junctions. 216506 known splicing junctions. 214418 novel splicing junctions.
sampling 90% (170047305) splicing reads. 432987 splicing junctions. 216723 known splicing junctions. 216264 novel splicing junctions.
sampling 95% (179494377) splicing reads. 434600 splicing junctions. 216915 known splicing junctions. 217685 novel splicing junctions.
sampling 100% (188941450) splicing reads. 435740 splicing junctions. 217055 known splicing junctions. 218685 novel splicing junctions.
null device 
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