Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f8/e88fd7fc7045f143707b3a331bf8bc/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5d/be02d9ed072d1420d6e63164ffff6b/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/eb/78880aa9d63347a65ceb8ec5a63b37/tih_rna_sample_00594_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5d/be02d9ed072d1420d6e63164ffff6b/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/05/358042018d33530932b1c9d34313a0/tih_rna_sample_00594_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)

processing ref_annot.bed ... Done
[W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00594_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai
processing tih_rna_sample_00594_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam ... Finished