Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f4/9baff156ff381dac88d37abbc169ea/tih_rna_sample_00704_B23MVV7LT4_1.star_alignment.Aligned.sortedByCoord.out.cram
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e8/e16e3bf16ddd59e9df95d58bb10708/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e8/e16e3bf16ddd59e9df95d58bb10708/.command.run
==> STAGING COMPLETE (3 inputs)

ls: *.bai: No such file or directory
ls: *.csi: No such file or directory