Using standard /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/agat_config.yaml file
------------------------------------------------------------------------------
| Another GFF Analysis Toolkit (AGAT) - Version: v1.2.0 |
| https://github.com/NBISweden/AGAT |
| National Bioinformatics Infrastructure Sweden (NBIS) - www.nbis.se |
------------------------------------------------------------------------------
------ Start parsing ------
-------------------------- parse options and metadata --------------------------
=> Accessing the feature_levels YAML file
Using standard /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/feature_levels.yaml file
=> Attribute used to group features when no Parent/ID relationship exists (i.e common tag):
* locus_tag
* gene_id
=> merge_loci option deactivated
=> Machine information:
This script is being run by perl v5.32.1
Bioperl location being used: /usr/local/lib/perl5/site_perl/Bio/
Operating system being used: linux
=> Accessing Ontology
No ontology accessible from the gff file header!
We use the SOFA ontology distributed with AGAT:
/usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/so.obo
Read ontology /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/so.obo:
4 root terms, and 2596 total terms, and 1516 leaf terms
Filtering ontology:
We found 1861 terms that are sequence_feature or is_a child of it.
--------------------------------- parsing file ---------------------------------
=> Number of line in file: 20005
=> Number of comment lines: 0
=> Fasta included: No
=> Number of features lines: 20005
=> Number of feature type (3rd column): 2
* Level1: 0 =>
* level2: 0 =>
* level3: 2 => CDS exon
* unknown: 0 =>
=>Check because only level3 features:
* Number of feature with Parent attribute:0
* Number of feature with a common attribute:20005
=> Some common attributes and some Parent attributes missing.
/!\ For features where both are missing A single Level2 features (e.g. mRNA) and a single level1 (e.g. gene) will be created by AGAT, and all level3 feautres (e,g, CDS,exon) will be attached to them. This is probably not what you want...
see B. 2.2 and 3. at https://agat.readthedocs.io/en/latest/agat_how_does_it_work.html
/!\ For features where the common attribute or the parent attribute is missing, it would be fine as long as you do not expect isoforms in your annotation (Eukaryote). see B. 4. at https://agat.readthedocs.io/en/latest/agat_how_does_it_work.html
!! You might try to fix the issue by choosing a common tag attribute to use in order to group the features correctly (parameter --ct in agat_convert_sp_gxf2gxf.pl).
=> Version of the Bioperl GFF parser selected by AGAT: 2
------ End parsing (done in 4 second) ------
------ Start checks ------
---------------------------- Check1: feature types -----------------------------
----------------------------------- ontology -----------------------------------
All feature types in agreement with the Ontology.
------------------------------------- agat -------------------------------------
AGAT can deal with all the encountered feature types (3rd column)
------------------------------ done in 0 seconds -------------------------------
------------------------------ Check2: duplicates ------------------------------
None found
------------------------------ done in 0 seconds -------------------------------
-------------------------- Check3: sequential bucket ---------------------------
Nothing to check as sequential bucket!
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check4: l2 linked to l3 ----------------------------
L1 and L2 created:
ADAP1--C7orf50 HAVANA gene 1728 16832 . + . FI_gene_label "ADAP1^ENSG00000105963.15" ; ID "ADAP1--C7orf50^ADAP1^ENSG00000105963.15" ; ccdsid "CCDS5318.1" ; exon_id "ENSE00003850789.1" ; exon_number 1 ; gene_id "ADAP1--C7orf50^ADAP1^ENSG00000105963.15" ; gene_name ADAP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000023380.16" ; havana_transcript "OTTHUMT00000059701.3" ; hgnc_id "HGNC:16486" ; level 2 ; orig_coord_info "chr7,954396,954477,-" ; protein_id "ENSP00000265846.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ADAP1--C7orf50^ENST00000265846.10" ; transcript_name "ADAP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
ADAP1--C7orf50 HAVANA mRNA 1728 16832 . + . FI_gene_label "ADAP1^ENSG00000105963.15" ; ID "ADAP1--C7orf50^ENST00000265846.10" ; Parent "ADAP1--C7orf50^ADAP1^ENSG00000105963.15" ; ccdsid "CCDS5318.1" ; exon_id "ENSE00003850789.1" ; exon_number 1 ; gene_id "ADAP1--C7orf50^ADAP1^ENSG00000105963.15" ; gene_name ADAP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000023380.16" ; havana_transcript "OTTHUMT00000059701.3" ; hgnc_id "HGNC:16486" ; level 2 ; orig_coord_info "chr7,954396,954477,-" ; protein_id "ENSP00000265846.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ADAP1--C7orf50^ENST00000265846.10" ; transcript_name "ADAP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ADAP1--C7orf50 HAVANA gene 19836 32793 . + . FI_gene_label "C7orf50^ENSG00000146540.15" ; ID "ADAP1--C7orf50^C7orf50^ENSG00000146540.15" ; ccdsid "CCDS5320.1" ; exon_id "ENSE00001034888.1" ; exon_number 2 ; gene_id "ADAP1--C7orf50^C7orf50^ENSG00000146540.15" ; gene_name C7orf50 ; gene_type protein_coding ; havana_gene "OTTHUMG00000151477.7" ; havana_transcript "OTTHUMT00000322816.2" ; hgnc_id "HGNC:22421" ; level 2 ; orig_coord_info "chr7,1127257,1127385,-" ; protein_id "ENSP00000350011.5" ; tag basic appris_principal_1 CCDS ; transcript_id "ADAP1--C7orf50^ENST00000357429.10" ; transcript_name "C7orf50-201" ; transcript_support_level 1 ; transcript_type protein_coding
ADAP1--C7orf50 HAVANA mRNA 19836 32793 . + . FI_gene_label "C7orf50^ENSG00000146540.15" ; ID "ADAP1--C7orf50^ENST00000357429.10" ; Parent "ADAP1--C7orf50^C7orf50^ENSG00000146540.15" ; ccdsid "CCDS5320.1" ; exon_id "ENSE00001034888.1" ; exon_number 2 ; gene_id "ADAP1--C7orf50^C7orf50^ENSG00000146540.15" ; gene_name C7orf50 ; gene_type protein_coding ; havana_gene "OTTHUMG00000151477.7" ; havana_transcript "OTTHUMT00000322816.2" ; hgnc_id "HGNC:22421" ; level 2 ; orig_coord_info "chr7,1127257,1127385,-" ; protein_id "ENSP00000350011.5" ; tag basic appris_principal_1 CCDS ; transcript_id "ADAP1--C7orf50^ENST00000357429.10" ; transcript_name "C7orf50-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ADCY1--GCK HAVANA gene 1229 32916 . + . FI_gene_label "ADCY1^ENSG00000164742.16" ; ID "ADCY1--GCK^ADCY1^ENSG00000164742.16" ; ccdsid "CCDS34631.1" ; exon_id "ENSE00001212237.4" ; exon_number 1 ; gene_id "ADCY1--GCK^ADCY1^ENSG00000164742.16" ; gene_name ADCY1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000155420.4" ; havana_transcript "OTTHUMT00000340055.3" ; hgnc_id "HGNC:232" ; level 2 ; orig_coord_info "chr7,45574544,45575182,+" ; protein_id "ENSP00000297323.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ADCY1--GCK^ENST00000297323.12" ; transcript_name "ADCY1-201" ; transcript_support_level 1 ; transcript_type protein_coding
ADCY1--GCK HAVANA mRNA 1229 32916 . + . FI_gene_label "ADCY1^ENSG00000164742.16" ; ID "ADCY1--GCK^ENST00000297323.12" ; Parent "ADCY1--GCK^ADCY1^ENSG00000164742.16" ; ccdsid "CCDS34631.1" ; exon_id "ENSE00001212237.4" ; exon_number 1 ; gene_id "ADCY1--GCK^ADCY1^ENSG00000164742.16" ; gene_name ADCY1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000155420.4" ; havana_transcript "OTTHUMT00000340055.3" ; hgnc_id "HGNC:232" ; level 2 ; orig_coord_info "chr7,45574544,45575182,+" ; protein_id "ENSP00000297323.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ADCY1--GCK^ENST00000297323.12" ; transcript_name "ADCY1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ADCY1--GCK HAVANA gene 47336 49205 . + . FI_gene_label "GCK^ENSG00000106633.17" ; ID "ADCY1--GCK^GCK^ENSG00000106633.17" ; exon_id "ENSE00001741995.1" ; exon_number 1 ; gene_id "ADCY1--GCK^GCK^ENSG00000106633.17" ; gene_name GCK ; gene_type protein_coding ; havana_gene "OTTHUMG00000022903.7" ; havana_transcript "OTTHUMT00000343117.3" ; hgnc_id "HGNC:4195" ; level 2 ; orig_coord_info "chr7,44146074,44146126,-" ; protein_id "ENSP00000338009.5" ; tag CAGE_supported_TSS basic ; transcript_id "ADCY1--GCK^ENST00000336642.9" ; transcript_name "GCK-201" ; transcript_support_level 2 ; transcript_type protein_coding
ADCY1--GCK HAVANA mRNA 47336 49205 . + . FI_gene_label "GCK^ENSG00000106633.17" ; ID "ADCY1--GCK^ENST00000336642.9" ; Parent "ADCY1--GCK^GCK^ENSG00000106633.17" ; exon_id "ENSE00001741995.1" ; exon_number 1 ; gene_id "ADCY1--GCK^GCK^ENSG00000106633.17" ; gene_name GCK ; gene_type protein_coding ; havana_gene "OTTHUMG00000022903.7" ; havana_transcript "OTTHUMT00000343117.3" ; hgnc_id "HGNC:4195" ; level 2 ; orig_coord_info "chr7,44146074,44146126,-" ; protein_id "ENSP00000338009.5" ; tag CAGE_supported_TSS basic ; transcript_id "ADCY1--GCK^ENST00000336642.9" ; transcript_name "GCK-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
ADGRF1--TNFRSF21 ENSEMBL gene 10127 22869 . + . FI_gene_label "ADGRF1^ENSG00000153292.16" ; ID "ADGRF1--TNFRSF21^ADGRF1^ENSG00000153292.16" ; exon_id "ENSE00002279638.1" ; exon_number 1 ; gene_id "ADGRF1--TNFRSF21^ADGRF1^ENSG00000153292.16" ; gene_name ADGRF1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014795.3" ; hgnc_id "HGNC:18990" ; level 3 ; orig_coord_info "chr6,47018480,47018499,-" ; protein_id "ENSP00000283297.5" ; tag basic ; transcript_id "ADGRF1--TNFRSF21^ENST00000283297.5" ; transcript_name "ADGRF1-201" ; transcript_support_level 1 ; transcript_type protein_coding
ADGRF1--TNFRSF21 ENSEMBL mRNA 10127 22869 . + . FI_gene_label "ADGRF1^ENSG00000153292.16" ; ID "ADGRF1--TNFRSF21^ENST00000283297.5" ; Parent "ADGRF1--TNFRSF21^ADGRF1^ENSG00000153292.16" ; exon_id "ENSE00002279638.1" ; exon_number 1 ; gene_id "ADGRF1--TNFRSF21^ADGRF1^ENSG00000153292.16" ; gene_name ADGRF1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014795.3" ; hgnc_id "HGNC:18990" ; level 3 ; orig_coord_info "chr6,47018480,47018499,-" ; protein_id "ENSP00000283297.5" ; tag basic ; transcript_id "ADGRF1--TNFRSF21^ENST00000283297.5" ; transcript_name "ADGRF1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ADGRF1--TNFRSF21 HAVANA gene 28384 36978 . + . FI_gene_label "TNFRSF21^ENSG00000146072.6" ; ID "ADGRF1--TNFRSF21^TNFRSF21^ENSG00000146072.6" ; ccdsid "CCDS4921.1" ; exon_id "ENSE00001226615.2" ; exon_number 1 ; gene_id "ADGRF1--TNFRSF21^TNFRSF21^ENSG00000146072.6" ; gene_name TNFRSF21 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014796.1" ; havana_transcript "OTTHUMT00000040814.1" ; hgnc_id "HGNC:13469" ; level 2 ; orig_coord_info "chr6,47309416,47309511,-" ; protein_id "ENSP00000296861.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ADGRF1--TNFRSF21^ENST00000296861.2" ; transcript_name "TNFRSF21-201" ; transcript_support_level 1 ; transcript_type protein_coding
ADGRF1--TNFRSF21 HAVANA mRNA 28384 36978 . + . FI_gene_label "TNFRSF21^ENSG00000146072.6" ; ID "ADGRF1--TNFRSF21^ENST00000296861.2" ; Parent "ADGRF1--TNFRSF21^TNFRSF21^ENSG00000146072.6" ; ccdsid "CCDS4921.1" ; exon_id "ENSE00001226615.2" ; exon_number 1 ; gene_id "ADGRF1--TNFRSF21^TNFRSF21^ENSG00000146072.6" ; gene_name TNFRSF21 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014796.1" ; havana_transcript "OTTHUMT00000040814.1" ; hgnc_id "HGNC:13469" ; level 2 ; orig_coord_info "chr6,47309416,47309511,-" ; protein_id "ENSP00000296861.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ADGRF1--TNFRSF21^ENST00000296861.2" ; transcript_name "TNFRSF21-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AHCY--AL356299.1 HAVANA gene 2334 13213 . + . FI_gene_label "AHCY^ENSG00000101444.13" ; ID "AHCY--AL356299.1^AHCY^ENSG00000101444.13" ; ccdsid "CCDS13233.1" ; exon_id "ENSE00001152081.5" ; exon_number 1 ; gene_id "AHCY--AL356299.1^AHCY^ENSG00000101444.13" ; gene_name AHCY ; gene_type protein_coding ; havana_gene "OTTHUMG00000140098.4" ; havana_transcript "OTTHUMT00000078773.3" ; hgnc_id "HGNC:343" ; level 2 ; orig_coord_info "chr20,34303243,34303270,-" ; protein_id "ENSP00000217426.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AHCY--AL356299.1^ENST00000217426.7" ; transcript_name "AHCY-201" ; transcript_support_level 1 ; transcript_type protein_coding
AHCY--AL356299.1 HAVANA mRNA 2334 13213 . + . FI_gene_label "AHCY^ENSG00000101444.13" ; ID "AHCY--AL356299.1^ENST00000217426.7" ; Parent "AHCY--AL356299.1^AHCY^ENSG00000101444.13" ; ccdsid "CCDS13233.1" ; exon_id "ENSE00001152081.5" ; exon_number 1 ; gene_id "AHCY--AL356299.1^AHCY^ENSG00000101444.13" ; gene_name AHCY ; gene_type protein_coding ; havana_gene "OTTHUMG00000140098.4" ; havana_transcript "OTTHUMT00000078773.3" ; hgnc_id "HGNC:343" ; level 2 ; orig_coord_info "chr20,34303243,34303270,-" ; protein_id "ENSP00000217426.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AHCY--AL356299.1^ENST00000217426.7" ; transcript_name "AHCY-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AKAP8L--BRD4 HAVANA gene 19217 47911 . + . FI_gene_label "BRD4^ENSG00000141867.19" ; ID "AKAP8L--BRD4^BRD4^ENSG00000141867.19" ; ccdsid "CCDS12328.1" ; exon_id "ENSE00001113202.1" ; exon_number 2 ; gene_id "AKAP8L--BRD4^BRD4^ENSG00000141867.19" ; gene_name BRD4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000183252.8" ; havana_transcript "OTTHUMT00000465800.4" ; hgnc_id "HGNC:13575" ; level 2 ; orig_coord_info "chr19,15272815,15273099,-" ; protein_id "ENSP00000263377.1" ; tag overlapping_uORF basic appris_principal_1 CCDS ; transcript_id "AKAP8L--BRD4^ENST00000263377.6" ; transcript_name "BRD4-201" ; transcript_support_level 1 ; transcript_type protein_coding
AKAP8L--BRD4 HAVANA mRNA 19217 47911 . + . FI_gene_label "BRD4^ENSG00000141867.19" ; ID "AKAP8L--BRD4^ENST00000263377.6" ; Parent "AKAP8L--BRD4^BRD4^ENSG00000141867.19" ; ccdsid "CCDS12328.1" ; exon_id "ENSE00001113202.1" ; exon_number 2 ; gene_id "AKAP8L--BRD4^BRD4^ENSG00000141867.19" ; gene_name BRD4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000183252.8" ; havana_transcript "OTTHUMT00000465800.4" ; hgnc_id "HGNC:13575" ; level 2 ; orig_coord_info "chr19,15272815,15273099,-" ; protein_id "ENSP00000263377.1" ; tag overlapping_uORF basic appris_principal_1 CCDS ; transcript_id "AKAP8L--BRD4^ENST00000263377.6" ; transcript_name "BRD4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AKAP8L--BRD4 HAVANA gene 1154 14506 . + . FI_gene_label "AKAP8L^ENSG00000011243.19" ; ID "AKAP8L--BRD4^AKAP8L^ENSG00000011243.19" ; ccdsid "CCDS46005.1" ; exon_id "ENSE00003693521.1" ; exon_number 1 ; gene_id "AKAP8L--BRD4^AKAP8L^ENSG00000011243.19" ; gene_name AKAP8L ; gene_type protein_coding ; havana_gene "OTTHUMG00000182446.9" ; havana_transcript "OTTHUMT00000461301.4" ; hgnc_id "HGNC:29857" ; level 2 ; orig_coord_info "chr19,15418911,15418923,-" ; protein_id "ENSP00000380557.3" ; tag CAGE_supported_TSS basic MANE_Select appris_principal_2 CCDS ; transcript_id "AKAP8L--BRD4^ENST00000397410.10" ; transcript_name "AKAP8L-201" ; transcript_support_level 1 ; transcript_type protein_coding
AKAP8L--BRD4 HAVANA mRNA 1154 14506 . + . FI_gene_label "AKAP8L^ENSG00000011243.19" ; ID "AKAP8L--BRD4^ENST00000397410.10" ; Parent "AKAP8L--BRD4^AKAP8L^ENSG00000011243.19" ; ccdsid "CCDS46005.1" ; exon_id "ENSE00003693521.1" ; exon_number 1 ; gene_id "AKAP8L--BRD4^AKAP8L^ENSG00000011243.19" ; gene_name AKAP8L ; gene_type protein_coding ; havana_gene "OTTHUMG00000182446.9" ; havana_transcript "OTTHUMT00000461301.4" ; hgnc_id "HGNC:29857" ; level 2 ; orig_coord_info "chr19,15418911,15418923,-" ; protein_id "ENSP00000380557.3" ; tag CAGE_supported_TSS basic MANE_Select appris_principal_2 CCDS ; transcript_id "AKAP8L--BRD4^ENST00000397410.10" ; transcript_name "AKAP8L-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ANKRD45--KLHL20 HAVANA gene 13166 27878 . + . FI_gene_label "KLHL20^ENSG00000076321.11" ; ID "ANKRD45--KLHL20^KLHL20^ENSG00000076321.11" ; ccdsid "CCDS1310.1" ; exon_id "ENSE00003670659.1" ; exon_number 2 ; gene_id "ANKRD45--KLHL20^KLHL20^ENSG00000076321.11" ; gene_name KLHL20 ; gene_type protein_coding ; havana_gene "OTTHUMG00000040548.2" ; havana_transcript "OTTHUMT00000097582.2" ; hgnc_id "HGNC:25056" ; level 2 ; orig_coord_info "chr1,173716044,173716066,+" ; protein_id "ENSP00000209884.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ANKRD45--KLHL20^ENST00000209884.5" ; transcript_name "KLHL20-201" ; transcript_support_level 1 ; transcript_type protein_coding
ANKRD45--KLHL20 HAVANA mRNA 13166 27878 . + . FI_gene_label "KLHL20^ENSG00000076321.11" ; ID "ANKRD45--KLHL20^ENST00000209884.5" ; Parent "ANKRD45--KLHL20^KLHL20^ENSG00000076321.11" ; ccdsid "CCDS1310.1" ; exon_id "ENSE00003670659.1" ; exon_number 2 ; gene_id "ANKRD45--KLHL20^KLHL20^ENSG00000076321.11" ; gene_name KLHL20 ; gene_type protein_coding ; havana_gene "OTTHUMG00000040548.2" ; havana_transcript "OTTHUMT00000097582.2" ; hgnc_id "HGNC:25056" ; level 2 ; orig_coord_info "chr1,173716044,173716066,+" ; protein_id "ENSP00000209884.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ANKRD45--KLHL20^ENST00000209884.5" ; transcript_name "KLHL20-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ANKRD45--KLHL20 HAVANA gene 1001 10125 . + . FI_gene_label "ANKRD45^ENSG00000183831.7" ; ID "ANKRD45--KLHL20^ANKRD45^ENSG00000183831.7" ; ccdsid "CCDS1309.1" ; exon_id "ENSE00002248306.1" ; exon_number 2 ; gene_id "ANKRD45--KLHL20^ANKRD45^ENSG00000183831.7" ; gene_name ANKRD45 ; gene_type protein_coding ; havana_gene "OTTHUMG00000040546.4" ; havana_transcript "OTTHUMT00000097580.3" ; hgnc_id "HGNC:24786" ; level 2 ; orig_coord_info "chr1,173659091,173659418,-" ; protein_id "ENSP00000331268.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ANKRD45--KLHL20^ENST00000333279.3" ; transcript_name "ANKRD45-201" ; transcript_support_level 1 ; transcript_type protein_coding
ANKRD45--KLHL20 HAVANA mRNA 1001 10125 . + . FI_gene_label "ANKRD45^ENSG00000183831.7" ; ID "ANKRD45--KLHL20^ENST00000333279.3" ; Parent "ANKRD45--KLHL20^ANKRD45^ENSG00000183831.7" ; ccdsid "CCDS1309.1" ; exon_id "ENSE00002248306.1" ; exon_number 2 ; gene_id "ANKRD45--KLHL20^ANKRD45^ENSG00000183831.7" ; gene_name ANKRD45 ; gene_type protein_coding ; havana_gene "OTTHUMG00000040546.4" ; havana_transcript "OTTHUMT00000097580.3" ; hgnc_id "HGNC:24786" ; level 2 ; orig_coord_info "chr1,173659091,173659418,-" ; protein_id "ENSP00000331268.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ANKRD45--KLHL20^ENST00000333279.3" ; transcript_name "ANKRD45-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ASPH--TACC2 HAVANA gene 79562 103629 . + . FI_gene_label "TACC2^ENSG00000138162.19" ; ID "ASPH--TACC2^TACC2^ENSG00000138162.19" ; ccdsid "CCDS7627.1" ; exon_id "ENSE00001920458.1" ; exon_number 1 ; gene_id "ASPH--TACC2^TACC2^ENSG00000138162.19" ; gene_name TACC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000019181.8" ; havana_transcript "OTTHUMT00000050774.1" ; hgnc_id "HGNC:11523" ; level 2 ; orig_coord_info "chr10,122163925,122163992,+" ; protein_id "ENSP00000260733.3" ; tag basic appris_alternative_2 CCDS ; transcript_id "ASPH--TACC2^ENST00000260733.7" ; transcript_name "TACC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
ASPH--TACC2 HAVANA mRNA 79562 103629 . + . FI_gene_label "TACC2^ENSG00000138162.19" ; ID "ASPH--TACC2^ENST00000260733.7" ; Parent "ASPH--TACC2^TACC2^ENSG00000138162.19" ; ccdsid "CCDS7627.1" ; exon_id "ENSE00001920458.1" ; exon_number 1 ; gene_id "ASPH--TACC2^TACC2^ENSG00000138162.19" ; gene_name TACC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000019181.8" ; havana_transcript "OTTHUMT00000050774.1" ; hgnc_id "HGNC:11523" ; level 2 ; orig_coord_info "chr10,122163925,122163992,+" ; protein_id "ENSP00000260733.3" ; tag basic appris_alternative_2 CCDS ; transcript_id "ASPH--TACC2^ENST00000260733.7" ; transcript_name "TACC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ASPH--TACC2 HAVANA gene 1045 33265 . + . FI_gene_label "ASPH^ENSG00000198363.18" ; ID "ASPH--TACC2^ASPH^ENSG00000198363.18" ; ccdsid "CCDS43742.1" ; exon_id "ENSE00002130497.1" ; exon_number 1 ; gene_id "ASPH--TACC2^ASPH^ENSG00000198363.18" ; gene_name ASPH ; gene_type protein_coding ; havana_gene "OTTHUMG00000164375.13" ; havana_transcript "OTTHUMT00000378511.2" ; hgnc_id "HGNC:757" ; level 2 ; orig_coord_info "chr8,61714269,61714371,-" ; protein_id "ENSP00000348841.5" ; tag basic CCDS ; transcript_id "ASPH--TACC2^ENST00000356457.9" ; transcript_name "ASPH-201" ; transcript_support_level 1 ; transcript_type protein_coding
ASPH--TACC2 HAVANA mRNA 1045 33265 . + . FI_gene_label "ASPH^ENSG00000198363.18" ; ID "ASPH--TACC2^ENST00000356457.9" ; Parent "ASPH--TACC2^ASPH^ENSG00000198363.18" ; ccdsid "CCDS43742.1" ; exon_id "ENSE00002130497.1" ; exon_number 1 ; gene_id "ASPH--TACC2^ASPH^ENSG00000198363.18" ; gene_name ASPH ; gene_type protein_coding ; havana_gene "OTTHUMG00000164375.13" ; havana_transcript "OTTHUMT00000378511.2" ; hgnc_id "HGNC:757" ; level 2 ; orig_coord_info "chr8,61714269,61714371,-" ; protein_id "ENSP00000348841.5" ; tag basic CCDS ; transcript_id "ASPH--TACC2^ENST00000356457.9" ; transcript_name "ASPH-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ATP7A--ATRX HAVANA gene 1038 35114 . + . FI_gene_label "ATP7A^ENSG00000165240.20" ; ID "ATP7A--ATRX^ATP7A^ENSG00000165240.20" ; ccdsid "CCDS35339.1" ; exon_id "ENSE00002210530.1" ; exon_number 2 ; gene_id "ATP7A--ATRX^ATP7A^ENSG00000165240.20" ; gene_name ATP7A ; gene_type protein_coding ; havana_gene "OTTHUMG00000021885.4" ; havana_transcript "OTTHUMT00000057306.3" ; hgnc_id "HGNC:869" ; level 2 ; orig_coord_info "chrX,77971642,77971761,+" ; protein_id "ENSP00000345728.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ATP7A--ATRX^ENST00000341514.11" ; transcript_name "ATP7A-201" ; transcript_support_level 1 ; transcript_type protein_coding
ATP7A--ATRX HAVANA mRNA 1038 35114 . + . FI_gene_label "ATP7A^ENSG00000165240.20" ; ID "ATP7A--ATRX^ENST00000341514.11" ; Parent "ATP7A--ATRX^ATP7A^ENSG00000165240.20" ; ccdsid "CCDS35339.1" ; exon_id "ENSE00002210530.1" ; exon_number 2 ; gene_id "ATP7A--ATRX^ATP7A^ENSG00000165240.20" ; gene_name ATP7A ; gene_type protein_coding ; havana_gene "OTTHUMG00000021885.4" ; havana_transcript "OTTHUMT00000057306.3" ; hgnc_id "HGNC:869" ; level 2 ; orig_coord_info "chrX,77971642,77971761,+" ; protein_id "ENSP00000345728.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ATP7A--ATRX^ENST00000341514.11" ; transcript_name "ATP7A-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ATP7A--ATRX HAVANA gene 38132 93174 . + . FI_gene_label "ATRX^ENSG00000085224.23" ; ID "ATP7A--ATRX^ATRX^ENSG00000085224.23" ; ccdsid "CCDS14434.1" ; exon_id "ENSE00003734946.1" ; exon_number 1 ; gene_id "ATP7A--ATRX^ATRX^ENSG00000085224.23" ; gene_name ATRX ; gene_type protein_coding ; havana_gene "OTTHUMG00000022686.12" ; havana_transcript "OTTHUMT00000058860.5" ; hgnc_id "HGNC:886" ; level 2 ; orig_coord_info "chrX,77785982,77786001,-" ; protein_id "ENSP00000362441.4" ; tag CAGE_supported_TSS basic MANE_Select appris_principal_3 CCDS ; transcript_id "ATP7A--ATRX^ENST00000373344.11" ; transcript_name "ATRX-201" ; transcript_support_level 1 ; transcript_type protein_coding
ATP7A--ATRX HAVANA mRNA 38132 93174 . + . FI_gene_label "ATRX^ENSG00000085224.23" ; ID "ATP7A--ATRX^ENST00000373344.11" ; Parent "ATP7A--ATRX^ATRX^ENSG00000085224.23" ; ccdsid "CCDS14434.1" ; exon_id "ENSE00003734946.1" ; exon_number 1 ; gene_id "ATP7A--ATRX^ATRX^ENSG00000085224.23" ; gene_name ATRX ; gene_type protein_coding ; havana_gene "OTTHUMG00000022686.12" ; havana_transcript "OTTHUMT00000058860.5" ; hgnc_id "HGNC:886" ; level 2 ; orig_coord_info "chrX,77785982,77786001,-" ; protein_id "ENSP00000362441.4" ; tag CAGE_supported_TSS basic MANE_Select appris_principal_3 CCDS ; transcript_id "ATP7A--ATRX^ENST00000373344.11" ; transcript_name "ATRX-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ATP7A--MAGT1 HAVANA gene 1038 35114 . + . FI_gene_label "ATP7A^ENSG00000165240.20" ; ID "ATP7A--MAGT1^ATP7A^ENSG00000165240.20" ; ccdsid "CCDS35339.1" ; exon_id "ENSE00002210530.1" ; exon_number 2 ; gene_id "ATP7A--MAGT1^ATP7A^ENSG00000165240.20" ; gene_name ATP7A ; gene_type protein_coding ; havana_gene "OTTHUMG00000021885.4" ; havana_transcript "OTTHUMT00000057306.3" ; hgnc_id "HGNC:869" ; level 2 ; orig_coord_info "chrX,77971642,77971761,+" ; protein_id "ENSP00000345728.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ATP7A--MAGT1^ENST00000341514.11" ; transcript_name "ATP7A-201" ; transcript_support_level 1 ; transcript_type protein_coding
ATP7A--MAGT1 HAVANA mRNA 1038 35114 . + . FI_gene_label "ATP7A^ENSG00000165240.20" ; ID "ATP7A--MAGT1^ENST00000341514.11" ; Parent "ATP7A--MAGT1^ATP7A^ENSG00000165240.20" ; ccdsid "CCDS35339.1" ; exon_id "ENSE00002210530.1" ; exon_number 2 ; gene_id "ATP7A--MAGT1^ATP7A^ENSG00000165240.20" ; gene_name ATP7A ; gene_type protein_coding ; havana_gene "OTTHUMG00000021885.4" ; havana_transcript "OTTHUMT00000057306.3" ; hgnc_id "HGNC:869" ; level 2 ; orig_coord_info "chrX,77971642,77971761,+" ; protein_id "ENSP00000345728.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ATP7A--MAGT1^ENST00000341514.11" ; transcript_name "ATP7A-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ATP7A--MAGT1 HAVANA gene 38115 52328 . + . FI_gene_label "MAGT1^ENSG00000102158.20" ; ID "ATP7A--MAGT1^MAGT1^ENSG00000102158.20" ; ccdsid "CCDS14436.2" ; exon_id "ENSE00001900899.1" ; exon_number 1 ; gene_id "ATP7A--MAGT1^MAGT1^ENSG00000102158.20" ; gene_name MAGT1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000021882.4" ; havana_transcript "OTTHUMT00000057301.2" ; hgnc_id "HGNC:28880" ; level 2 ; orig_coord_info "chrX,77895309,77895506,-" ; protein_id "ENSP00000354649.5" ; tag basic appris_principal_4 CCDS ; transcript_id "ATP7A--MAGT1^ENST00000358075.10" ; transcript_name "MAGT1-201" ; transcript_support_level 1 ; transcript_type protein_coding
ATP7A--MAGT1 HAVANA mRNA 38115 52328 . + . FI_gene_label "MAGT1^ENSG00000102158.20" ; ID "ATP7A--MAGT1^ENST00000358075.10" ; Parent "ATP7A--MAGT1^MAGT1^ENSG00000102158.20" ; ccdsid "CCDS14436.2" ; exon_id "ENSE00001900899.1" ; exon_number 1 ; gene_id "ATP7A--MAGT1^MAGT1^ENSG00000102158.20" ; gene_name MAGT1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000021882.4" ; havana_transcript "OTTHUMT00000057301.2" ; hgnc_id "HGNC:28880" ; level 2 ; orig_coord_info "chrX,77895309,77895506,-" ; protein_id "ENSP00000354649.5" ; tag basic appris_principal_4 CCDS ; transcript_id "ATP7A--MAGT1^ENST00000358075.10" ; transcript_name "MAGT1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ATXN10--TTC38 HAVANA gene 1037 22970 . + . FI_gene_label "ATXN10^ENSG00000130638.17" ; ID "ATXN10--TTC38^ATXN10^ENSG00000130638.17" ; ccdsid "CCDS14070.1" ; exon_id "ENSE00001487386.3" ; exon_number 1 ; gene_id "ATXN10--TTC38^ATXN10^ENSG00000130638.17" ; gene_name ATXN10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150451.3" ; havana_transcript "OTTHUMT00000318142.3" ; hgnc_id "HGNC:10549" ; level 2 ; orig_coord_info "chr22,45672064,45672179,+" ; protein_id "ENSP00000252934.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ATXN10--TTC38^ENST00000252934.10" ; transcript_name "ATXN10-201" ; transcript_support_level 1 ; transcript_type protein_coding
ATXN10--TTC38 HAVANA mRNA 1037 22970 . + . FI_gene_label "ATXN10^ENSG00000130638.17" ; ID "ATXN10--TTC38^ENST00000252934.10" ; Parent "ATXN10--TTC38^ATXN10^ENSG00000130638.17" ; ccdsid "CCDS14070.1" ; exon_id "ENSE00001487386.3" ; exon_number 1 ; gene_id "ATXN10--TTC38^ATXN10^ENSG00000130638.17" ; gene_name ATXN10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150451.3" ; havana_transcript "OTTHUMT00000318142.3" ; hgnc_id "HGNC:10549" ; level 2 ; orig_coord_info "chr22,45672064,45672179,+" ; protein_id "ENSP00000252934.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ATXN10--TTC38^ENST00000252934.10" ; transcript_name "ATXN10-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ATXN10--TTC38 HAVANA gene 26018 42994 . + . FI_gene_label "TTC38^ENSG00000075234.17" ; ID "ATXN10--TTC38^TTC38^ENSG00000075234.17" ; ccdsid "CCDS43030.1" ; exon_id "ENSE00003686648.1" ; exon_number 1 ; gene_id "ATXN10--TTC38^TTC38^ENSG00000075234.17" ; gene_name TTC38 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150494.3" ; havana_transcript "OTTHUMT00000318469.2" ; hgnc_id "HGNC:26082" ; level 1 ; orig_coord_info "chr22,46268040,46268072,+" ; protein_id "ENSP00000370419.3" ; tag basic MANE_Select appris_principal_1 exp_conf CCDS ; transcript_id "ATXN10--TTC38^ENST00000381031.8" ; transcript_name "TTC38-201" ; transcript_support_level 1 ; transcript_type protein_coding
ATXN10--TTC38 HAVANA mRNA 26018 42994 . + . FI_gene_label "TTC38^ENSG00000075234.17" ; ID "ATXN10--TTC38^ENST00000381031.8" ; Parent "ATXN10--TTC38^TTC38^ENSG00000075234.17" ; ccdsid "CCDS43030.1" ; exon_id "ENSE00003686648.1" ; exon_number 1 ; gene_id "ATXN10--TTC38^TTC38^ENSG00000075234.17" ; gene_name TTC38 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150494.3" ; havana_transcript "OTTHUMT00000318469.2" ; hgnc_id "HGNC:26082" ; level 1 ; orig_coord_info "chr22,46268040,46268072,+" ; protein_id "ENSP00000370419.3" ; tag basic MANE_Select appris_principal_1 exp_conf CCDS ; transcript_id "ATXN10--TTC38^ENST00000381031.8" ; transcript_name "TTC38-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AVL9--DPY19L1P2 HAVANA gene 1064 30635 . + . FI_gene_label "AVL9^ENSG00000105778.19" ; ID "AVL9--DPY19L1P2^AVL9^ENSG00000105778.19" ; ccdsid "CCDS34613.1" ; exon_id "ENSE00001944463.1" ; exon_number 1 ; gene_id "AVL9--DPY19L1P2^AVL9^ENSG00000105778.19" ; gene_name AVL9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000152929.2" ; havana_transcript "OTTHUMT00000328643.2" ; hgnc_id "HGNC:28994" ; level 2 ; orig_coord_info "chr7,32495710,32495802,+" ; protein_id "ENSP00000315568.4" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "AVL9--DPY19L1P2^ENST00000318709.9" ; transcript_name "AVL9-201" ; transcript_support_level 2 ; transcript_type protein_coding
AVL9--DPY19L1P2 HAVANA mRNA 1064 30635 . + . FI_gene_label "AVL9^ENSG00000105778.19" ; ID "AVL9--DPY19L1P2^ENST00000318709.9" ; Parent "AVL9--DPY19L1P2^AVL9^ENSG00000105778.19" ; ccdsid "CCDS34613.1" ; exon_id "ENSE00001944463.1" ; exon_number 1 ; gene_id "AVL9--DPY19L1P2^AVL9^ENSG00000105778.19" ; gene_name AVL9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000152929.2" ; havana_transcript "OTTHUMT00000328643.2" ; hgnc_id "HGNC:28994" ; level 2 ; orig_coord_info "chr7,32495710,32495802,+" ; protein_id "ENSP00000315568.4" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "AVL9--DPY19L1P2^ENST00000318709.9" ; transcript_name "AVL9-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
BPTF--LINC00674 HAVANA gene 1001 44099 . + . FI_gene_label "BPTF^ENSG00000171634.18" ; ID "BPTF--LINC00674^BPTF^ENSG00000171634.18" ; ccdsid "CCDS11673.1" ; exon_id "ENSE00002689718.2" ; exon_number 1 ; gene_id "BPTF--LINC00674^BPTF^ENSG00000171634.18" ; gene_name BPTF ; gene_type protein_coding ; havana_gene "OTTHUMG00000132254.6" ; havana_transcript "OTTHUMT00000255334.3" ; hgnc_id "HGNC:3581" ; level 2 ; orig_coord_info "chr17,67825725,67826337,+" ; protein_id "ENSP00000307208.6" ; tag basic MANE_Select CCDS ; transcript_id "BPTF--LINC00674^ENST00000306378.11" ; transcript_name "BPTF-201" ; transcript_support_level 1 ; transcript_type protein_coding
BPTF--LINC00674 HAVANA mRNA 1001 44099 . + . FI_gene_label "BPTF^ENSG00000171634.18" ; ID "BPTF--LINC00674^ENST00000306378.11" ; Parent "BPTF--LINC00674^BPTF^ENSG00000171634.18" ; ccdsid "CCDS11673.1" ; exon_id "ENSE00002689718.2" ; exon_number 1 ; gene_id "BPTF--LINC00674^BPTF^ENSG00000171634.18" ; gene_name BPTF ; gene_type protein_coding ; havana_gene "OTTHUMG00000132254.6" ; havana_transcript "OTTHUMT00000255334.3" ; hgnc_id "HGNC:3581" ; level 2 ; orig_coord_info "chr17,67825725,67826337,+" ; protein_id "ENSP00000307208.6" ; tag basic MANE_Select CCDS ; transcript_id "BPTF--LINC00674^ENST00000306378.11" ; transcript_name "BPTF-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CCT2--FRS2 HAVANA gene 1034 12714 . + . FI_gene_label "CCT2^ENSG00000166226.13" ; ID "CCT2--FRS2^CCT2^ENSG00000166226.13" ; ccdsid "CCDS8991.1" ; exon_id "ENSE00002415709.2" ; exon_number 1 ; gene_id "CCT2--FRS2^CCT2^ENSG00000166226.13" ; gene_name CCT2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000169383.2" ; havana_transcript "OTTHUMT00000403818.2" ; hgnc_id "HGNC:1615" ; level 2 ; orig_coord_info "chr12,69585522,69585524,+" ; protein_id "ENSP00000299300.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CCT2--FRS2^ENST00000299300.11" ; transcript_name "CCT2-201" ; transcript_support_level 1 ; transcript_type protein_coding
CCT2--FRS2 HAVANA mRNA 1034 12714 . + . FI_gene_label "CCT2^ENSG00000166226.13" ; ID "CCT2--FRS2^ENST00000299300.11" ; Parent "CCT2--FRS2^CCT2^ENSG00000166226.13" ; ccdsid "CCDS8991.1" ; exon_id "ENSE00002415709.2" ; exon_number 1 ; gene_id "CCT2--FRS2^CCT2^ENSG00000166226.13" ; gene_name CCT2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000169383.2" ; havana_transcript "OTTHUMT00000403818.2" ; hgnc_id "HGNC:1615" ; level 2 ; orig_coord_info "chr12,69585522,69585524,+" ; protein_id "ENSP00000299300.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CCT2--FRS2^ENST00000299300.11" ; transcript_name "CCT2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CCT2--FRS2 ENSEMBL gene 23375 35397 . + . FI_gene_label "FRS2^ENSG00000166225.9" ; ID "CCT2--FRS2^FRS2^ENSG00000166225.9" ; ccdsid "CCDS41809.1" ; exon_id "ENSE00001101187.1" ; exon_number 3 ; gene_id "CCT2--FRS2^FRS2^ENSG00000166225.9" ; gene_name FRS2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000169373.3" ; hgnc_id "HGNC:16971" ; level 3 ; orig_coord_info "chr12,69569031,69569096,+" ; protein_id "ENSP00000381083.2" ; tag basic appris_principal_1 CCDS ; transcript_id "CCT2--FRS2^ENST00000397997.6" ; transcript_name "FRS2-201" ; transcript_support_level 5 ; transcript_type protein_coding
CCT2--FRS2 ENSEMBL mRNA 23375 35397 . + . FI_gene_label "FRS2^ENSG00000166225.9" ; ID "CCT2--FRS2^ENST00000397997.6" ; Parent "CCT2--FRS2^FRS2^ENSG00000166225.9" ; ccdsid "CCDS41809.1" ; exon_id "ENSE00001101187.1" ; exon_number 3 ; gene_id "CCT2--FRS2^FRS2^ENSG00000166225.9" ; gene_name FRS2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000169373.3" ; hgnc_id "HGNC:16971" ; level 3 ; orig_coord_info "chr12,69569031,69569096,+" ; protein_id "ENSP00000381083.2" ; tag basic appris_principal_1 CCDS ; transcript_id "CCT2--FRS2^ENST00000397997.6" ; transcript_name "FRS2-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
CDC42--CELA3B HAVANA gene 2212 15067 . + . FI_gene_label "CDC42^ENSG00000070831.17" ; ID "CDC42--CELA3B^CDC42^ENSG00000070831.17" ; ccdsid "CCDS222.1" ; exon_id "ENSE00003849315.1" ; exon_number 2 ; gene_id "CDC42--CELA3B^CDC42^ENSG00000070831.17" ; gene_name CDC42 ; gene_type protein_coding ; havana_gene "OTTHUMG00000002753.10" ; havana_transcript "OTTHUMT00000008075.2" ; hgnc_id "HGNC:1736" ; level 2 ; orig_coord_info "chr1,22078479,22078583,+" ; protein_id "ENSP00000314458.8" ; tag CAGE_supported_TSS basic appris_alternative_1 CCDS ; transcript_id "CDC42--CELA3B^ENST00000315554.13" ; transcript_name "CDC42-201" ; transcript_support_level 1 ; transcript_type protein_coding
CDC42--CELA3B HAVANA mRNA 2212 15067 . + . FI_gene_label "CDC42^ENSG00000070831.17" ; ID "CDC42--CELA3B^ENST00000315554.13" ; Parent "CDC42--CELA3B^CDC42^ENSG00000070831.17" ; ccdsid "CCDS222.1" ; exon_id "ENSE00003849315.1" ; exon_number 2 ; gene_id "CDC42--CELA3B^CDC42^ENSG00000070831.17" ; gene_name CDC42 ; gene_type protein_coding ; havana_gene "OTTHUMG00000002753.10" ; havana_transcript "OTTHUMT00000008075.2" ; hgnc_id "HGNC:1736" ; level 2 ; orig_coord_info "chr1,22078479,22078583,+" ; protein_id "ENSP00000314458.8" ; tag CAGE_supported_TSS basic appris_alternative_1 CCDS ; transcript_id "CDC42--CELA3B^ENST00000315554.13" ; transcript_name "CDC42-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CDC42--CELA3B HAVANA gene 28621 35614 . + . FI_gene_label "CELA3B^ENSG00000219073.8" ; ID "CDC42--CELA3B^CELA3B^ENSG00000219073.8" ; ccdsid "CCDS219.1" ; exon_id "ENSE00001464211.3" ; exon_number 1 ; gene_id "CDC42--CELA3B^CELA3B^ENSG00000219073.8" ; gene_name CELA3B ; gene_type protein_coding ; havana_gene "OTTHUMG00000002758.5" ; havana_transcript "OTTHUMT00000007797.2" ; hgnc_id "HGNC:15945" ; level 2 ; orig_coord_info "chr1,21977040,21977082,+" ; protein_id "ENSP00000338369.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CDC42--CELA3B^ENST00000337107.11" ; transcript_name "CELA3B-201" ; transcript_support_level 1 ; transcript_type protein_coding
CDC42--CELA3B HAVANA mRNA 28621 35614 . + . FI_gene_label "CELA3B^ENSG00000219073.8" ; ID "CDC42--CELA3B^ENST00000337107.11" ; Parent "CDC42--CELA3B^CELA3B^ENSG00000219073.8" ; ccdsid "CCDS219.1" ; exon_id "ENSE00001464211.3" ; exon_number 1 ; gene_id "CDC42--CELA3B^CELA3B^ENSG00000219073.8" ; gene_name CELA3B ; gene_type protein_coding ; havana_gene "OTTHUMG00000002758.5" ; havana_transcript "OTTHUMT00000007797.2" ; hgnc_id "HGNC:15945" ; level 2 ; orig_coord_info "chr1,21977040,21977082,+" ; protein_id "ENSP00000338369.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CDC42--CELA3B^ENST00000337107.11" ; transcript_name "CELA3B-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CERS6--NOSTRIN HAVANA gene 1024 17424 . + . FI_gene_label "CERS6^ENSG00000172292.15" ; ID "CERS6--NOSTRIN^CERS6^ENSG00000172292.15" ; ccdsid "CCDS2228.1" ; exon_id "ENSE00002561332.2" ; exon_number 1 ; gene_id "CERS6--NOSTRIN^CERS6^ENSG00000172292.15" ; gene_name CERS6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132183.4" ; havana_transcript "OTTHUMT00000255235.3" ; hgnc_id "HGNC:23826" ; level 2 ; orig_coord_info "chr2,168456449,168456618,+" ; protein_id "ENSP00000306579.6" ; tag basic MANE_Select appris_alternative_1 CCDS ; transcript_id "CERS6--NOSTRIN^ENST00000305747.11" ; transcript_name "CERS6-201" ; transcript_support_level 2 ; transcript_type protein_coding
CERS6--NOSTRIN HAVANA mRNA 1024 17424 . + . FI_gene_label "CERS6^ENSG00000172292.15" ; ID "CERS6--NOSTRIN^ENST00000305747.11" ; Parent "CERS6--NOSTRIN^CERS6^ENSG00000172292.15" ; ccdsid "CCDS2228.1" ; exon_id "ENSE00002561332.2" ; exon_number 1 ; gene_id "CERS6--NOSTRIN^CERS6^ENSG00000172292.15" ; gene_name CERS6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132183.4" ; havana_transcript "OTTHUMT00000255235.3" ; hgnc_id "HGNC:23826" ; level 2 ; orig_coord_info "chr2,168456449,168456618,+" ; protein_id "ENSP00000306579.6" ; tag basic MANE_Select appris_alternative_1 CCDS ; transcript_id "CERS6--NOSTRIN^ENST00000305747.11" ; transcript_name "CERS6-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
CERS6--NOSTRIN HAVANA gene 25177 43216 . + . FI_gene_label "NOSTRIN^ENSG00000163072.16" ; ID "CERS6--NOSTRIN^NOSTRIN^ENSG00000163072.16" ; ccdsid "CCDS42771.1" ; exon_id "ENSE00001829457.2" ; exon_number 1 ; gene_id "CERS6--NOSTRIN^NOSTRIN^ENSG00000163072.16" ; gene_name NOSTRIN ; gene_type protein_coding ; havana_gene "OTTHUMG00000153990.20" ; havana_transcript "OTTHUMT00000333356.4" ; hgnc_id "HGNC:20203" ; level 2 ; orig_coord_info "chr2,168802647,168802673,+" ; protein_id "ENSP00000318921.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CERS6--NOSTRIN^ENST00000317647.12" ; transcript_name "NOSTRIN-201" ; transcript_support_level 1 ; transcript_type protein_coding
CERS6--NOSTRIN HAVANA mRNA 25177 43216 . + . FI_gene_label "NOSTRIN^ENSG00000163072.16" ; ID "CERS6--NOSTRIN^ENST00000317647.12" ; Parent "CERS6--NOSTRIN^NOSTRIN^ENSG00000163072.16" ; ccdsid "CCDS42771.1" ; exon_id "ENSE00001829457.2" ; exon_number 1 ; gene_id "CERS6--NOSTRIN^NOSTRIN^ENSG00000163072.16" ; gene_name NOSTRIN ; gene_type protein_coding ; havana_gene "OTTHUMG00000153990.20" ; havana_transcript "OTTHUMT00000333356.4" ; hgnc_id "HGNC:20203" ; level 2 ; orig_coord_info "chr2,168802647,168802673,+" ; protein_id "ENSP00000318921.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CERS6--NOSTRIN^ENST00000317647.12" ; transcript_name "NOSTRIN-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CLIP2--LAT2 HAVANA gene 1001 24520 . + . FI_gene_label "CLIP2^ENSG00000106665.16" ; ID "CLIP2--LAT2^CLIP2^ENSG00000106665.16" ; ccdsid "CCDS5569.1" ; exon_id "ENSE00001128453.3" ; exon_number 2 ; gene_id "CLIP2--LAT2^CLIP2^ENSG00000106665.16" ; gene_name CLIP2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000022980.5" ; havana_transcript "OTTHUMT00000252556.3" ; hgnc_id "HGNC:2586" ; level 2 ; orig_coord_info "chr7,74317547,74317667,+" ; protein_id "ENSP00000223398.6" ; tag RNA_Seq_supported_partial basic MANE_Select appris_principal_3 CCDS ; transcript_id "CLIP2--LAT2^ENST00000223398.11" ; transcript_name "CLIP2-201" ; transcript_support_level 5 ; transcript_type protein_coding
CLIP2--LAT2 HAVANA mRNA 1001 24520 . + . FI_gene_label "CLIP2^ENSG00000106665.16" ; ID "CLIP2--LAT2^ENST00000223398.11" ; Parent "CLIP2--LAT2^CLIP2^ENSG00000106665.16" ; ccdsid "CCDS5569.1" ; exon_id "ENSE00001128453.3" ; exon_number 2 ; gene_id "CLIP2--LAT2^CLIP2^ENSG00000106665.16" ; gene_name CLIP2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000022980.5" ; havana_transcript "OTTHUMT00000252556.3" ; hgnc_id "HGNC:2586" ; level 2 ; orig_coord_info "chr7,74317547,74317667,+" ; protein_id "ENSP00000223398.6" ; tag RNA_Seq_supported_partial basic MANE_Select appris_principal_3 CCDS ; transcript_id "CLIP2--LAT2^ENST00000223398.11" ; transcript_name "CLIP2-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
CLIP2--LAT2 HAVANA gene 29165 40912 . + . FI_gene_label "LAT2^ENSG00000086730.17" ; ID "CLIP2--LAT2^LAT2^ENSG00000086730.17" ; ccdsid "CCDS5566.2" ; exon_id "ENSE00002180078.1" ; exon_number 3 ; gene_id "CLIP2--LAT2^LAT2^ENSG00000086730.17" ; gene_name LAT2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000130151.11" ; havana_transcript "OTTHUMT00000348624.1" ; hgnc_id "HGNC:12749" ; level 2 ; orig_coord_info "chr7,74215976,74216069,+" ; protein_id "ENSP00000275635.7" ; tag alternative_5_UTR basic appris_principal_1 CCDS ; transcript_id "CLIP2--LAT2^ENST00000275635.11" ; transcript_name "LAT2-201" ; transcript_support_level 1 ; transcript_type protein_coding
CLIP2--LAT2 HAVANA mRNA 29165 40912 . + . FI_gene_label "LAT2^ENSG00000086730.17" ; ID "CLIP2--LAT2^ENST00000275635.11" ; Parent "CLIP2--LAT2^LAT2^ENSG00000086730.17" ; ccdsid "CCDS5566.2" ; exon_id "ENSE00002180078.1" ; exon_number 3 ; gene_id "CLIP2--LAT2^LAT2^ENSG00000086730.17" ; gene_name LAT2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000130151.11" ; havana_transcript "OTTHUMT00000348624.1" ; hgnc_id "HGNC:12749" ; level 2 ; orig_coord_info "chr7,74215976,74216069,+" ; protein_id "ENSP00000275635.7" ; tag alternative_5_UTR basic appris_principal_1 CCDS ; transcript_id "CLIP2--LAT2^ENST00000275635.11" ; transcript_name "LAT2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CNOT2--IRAK3 HAVANA gene 1432 32747 . + . FI_gene_label "CNOT2^ENSG00000111596.14" ; ID "CNOT2--IRAK3^CNOT2^ENSG00000111596.14" ; ccdsid "CCDS31857.1" ; exon_id "ENSE00003652343.1" ; exon_number 2 ; gene_id "CNOT2--IRAK3^CNOT2^ENSG00000111596.14" ; gene_name CNOT2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000169481.8" ; havana_transcript "OTTHUMT00000404258.4" ; hgnc_id "HGNC:7878" ; level 2 ; orig_coord_info "chr12,70278227,70278274,+" ; protein_id "ENSP00000229195.3" ; tag alternative_5_UTR RNA_Seq_supported_partial basic MANE_Select CCDS ; transcript_id "CNOT2--IRAK3^ENST00000229195.8" ; transcript_name "CNOT2-201" ; transcript_support_level 1 ; transcript_type protein_coding
CNOT2--IRAK3 HAVANA mRNA 1432 32747 . + . FI_gene_label "CNOT2^ENSG00000111596.14" ; ID "CNOT2--IRAK3^ENST00000229195.8" ; Parent "CNOT2--IRAK3^CNOT2^ENSG00000111596.14" ; ccdsid "CCDS31857.1" ; exon_id "ENSE00003652343.1" ; exon_number 2 ; gene_id "CNOT2--IRAK3^CNOT2^ENSG00000111596.14" ; gene_name CNOT2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000169481.8" ; havana_transcript "OTTHUMT00000404258.4" ; hgnc_id "HGNC:7878" ; level 2 ; orig_coord_info "chr12,70278227,70278274,+" ; protein_id "ENSP00000229195.3" ; tag alternative_5_UTR RNA_Seq_supported_partial basic MANE_Select CCDS ; transcript_id "CNOT2--IRAK3^ENST00000229195.8" ; transcript_name "CNOT2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CNOT2--IRAK3 HAVANA gene 35767 55411 . + . FI_gene_label "IRAK3^ENSG00000090376.11" ; ID "CNOT2--IRAK3^IRAK3^ENSG00000090376.11" ; ccdsid "CCDS8975.1" ; exon_id "ENSE00002237551.2" ; exon_number 1 ; gene_id "CNOT2--IRAK3^IRAK3^ENSG00000090376.11" ; gene_name IRAK3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000169002.2" ; havana_transcript "OTTHUMT00000401908.2" ; hgnc_id "HGNC:17020" ; level 2 ; orig_coord_info "chr12,66189300,66189432,+" ; protein_id "ENSP00000261233.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CNOT2--IRAK3^ENST00000261233.9" ; transcript_name "IRAK3-201" ; transcript_support_level 1 ; transcript_type protein_coding
CNOT2--IRAK3 HAVANA mRNA 35767 55411 . + . FI_gene_label "IRAK3^ENSG00000090376.11" ; ID "CNOT2--IRAK3^ENST00000261233.9" ; Parent "CNOT2--IRAK3^IRAK3^ENSG00000090376.11" ; ccdsid "CCDS8975.1" ; exon_id "ENSE00002237551.2" ; exon_number 1 ; gene_id "CNOT2--IRAK3^IRAK3^ENSG00000090376.11" ; gene_name IRAK3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000169002.2" ; havana_transcript "OTTHUMT00000401908.2" ; hgnc_id "HGNC:17020" ; level 2 ; orig_coord_info "chr12,66189300,66189432,+" ; protein_id "ENSP00000261233.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CNOT2--IRAK3^ENST00000261233.9" ; transcript_name "IRAK3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CNOT2--TPH2 HAVANA gene 1432 32747 . + . FI_gene_label "CNOT2^ENSG00000111596.14" ; ID "CNOT2--TPH2^CNOT2^ENSG00000111596.14" ; ccdsid "CCDS31857.1" ; exon_id "ENSE00003652343.1" ; exon_number 2 ; gene_id "CNOT2--TPH2^CNOT2^ENSG00000111596.14" ; gene_name CNOT2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000169481.8" ; havana_transcript "OTTHUMT00000404258.4" ; hgnc_id "HGNC:7878" ; level 2 ; orig_coord_info "chr12,70278227,70278274,+" ; protein_id "ENSP00000229195.3" ; tag alternative_5_UTR RNA_Seq_supported_partial basic MANE_Select CCDS ; transcript_id "CNOT2--TPH2^ENST00000229195.8" ; transcript_name "CNOT2-201" ; transcript_support_level 1 ; transcript_type protein_coding
CNOT2--TPH2 HAVANA mRNA 1432 32747 . + . FI_gene_label "CNOT2^ENSG00000111596.14" ; ID "CNOT2--TPH2^ENST00000229195.8" ; Parent "CNOT2--TPH2^CNOT2^ENSG00000111596.14" ; ccdsid "CCDS31857.1" ; exon_id "ENSE00003652343.1" ; exon_number 2 ; gene_id "CNOT2--TPH2^CNOT2^ENSG00000111596.14" ; gene_name CNOT2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000169481.8" ; havana_transcript "OTTHUMT00000404258.4" ; hgnc_id "HGNC:7878" ; level 2 ; orig_coord_info "chr12,70278227,70278274,+" ; protein_id "ENSP00000229195.3" ; tag alternative_5_UTR RNA_Seq_supported_partial basic MANE_Select CCDS ; transcript_id "CNOT2--TPH2^ENST00000229195.8" ; transcript_name "CNOT2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CNOT2--TPH2 HAVANA gene 35748 50718 . + . FI_gene_label "TPH2^ENSG00000139287.13" ; ID "CNOT2--TPH2^TPH2^ENSG00000139287.13" ; ccdsid "CCDS31859.1" ; exon_id "ENSE00001339312.3" ; exon_number 1 ; gene_id "CNOT2--TPH2^TPH2^ENSG00000139287.13" ; gene_name TPH2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000169677.3" ; havana_transcript "OTTHUMT00000405234.2" ; hgnc_id "HGNC:20692" ; level 2 ; orig_coord_info "chr12,71938987,71939091,+" ; protein_id "ENSP00000329093.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CNOT2--TPH2^ENST00000333850.4" ; transcript_name "TPH2-201" ; transcript_support_level 1 ; transcript_type protein_coding
CNOT2--TPH2 HAVANA mRNA 35748 50718 . + . FI_gene_label "TPH2^ENSG00000139287.13" ; ID "CNOT2--TPH2^ENST00000333850.4" ; Parent "CNOT2--TPH2^TPH2^ENSG00000139287.13" ; ccdsid "CCDS31859.1" ; exon_id "ENSE00001339312.3" ; exon_number 1 ; gene_id "CNOT2--TPH2^TPH2^ENSG00000139287.13" ; gene_name TPH2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000169677.3" ; havana_transcript "OTTHUMT00000405234.2" ; hgnc_id "HGNC:20692" ; level 2 ; orig_coord_info "chr12,71938987,71939091,+" ; protein_id "ENSP00000329093.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CNOT2--TPH2^ENST00000333850.4" ; transcript_name "TPH2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
COX19--C7orf50 HAVANA gene 1001 8840 . + . FI_gene_label "COX19^ENSG00000240230.6" ; ID "COX19--C7orf50^COX19^ENSG00000240230.6" ; ccdsid "CCDS34582.1" ; exon_id "ENSE00003485938.1" ; exon_number 1 ; gene_id "COX19--C7orf50^COX19^ENSG00000240230.6" ; gene_name COX19 ; gene_type protein_coding ; havana_gene "OTTHUMG00000151476.2" ; havana_transcript "OTTHUMT00000322812.2" ; hgnc_id "HGNC:28074" ; level 2 ; orig_coord_info "chr7,975428,975509,-" ; protein_id "ENSP00000342015.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "COX19--C7orf50^ENST00000344111.4" ; transcript_name "COX19-201" ; transcript_support_level 1 ; transcript_type protein_coding
COX19--C7orf50 HAVANA mRNA 1001 8840 . + . FI_gene_label "COX19^ENSG00000240230.6" ; ID "COX19--C7orf50^ENST00000344111.4" ; Parent "COX19--C7orf50^COX19^ENSG00000240230.6" ; ccdsid "CCDS34582.1" ; exon_id "ENSE00003485938.1" ; exon_number 1 ; gene_id "COX19--C7orf50^COX19^ENSG00000240230.6" ; gene_name COX19 ; gene_type protein_coding ; havana_gene "OTTHUMG00000151476.2" ; havana_transcript "OTTHUMT00000322812.2" ; hgnc_id "HGNC:28074" ; level 2 ; orig_coord_info "chr7,975428,975509,-" ; protein_id "ENSP00000342015.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "COX19--C7orf50^ENST00000344111.4" ; transcript_name "COX19-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
COX19--C7orf50 HAVANA gene 20036 32993 . + . FI_gene_label "C7orf50^ENSG00000146540.15" ; ID "COX19--C7orf50^C7orf50^ENSG00000146540.15" ; ccdsid "CCDS5320.1" ; exon_id "ENSE00001034888.1" ; exon_number 2 ; gene_id "COX19--C7orf50^C7orf50^ENSG00000146540.15" ; gene_name C7orf50 ; gene_type protein_coding ; havana_gene "OTTHUMG00000151477.7" ; havana_transcript "OTTHUMT00000322816.2" ; hgnc_id "HGNC:22421" ; level 2 ; orig_coord_info "chr7,1127257,1127385,-" ; protein_id "ENSP00000350011.5" ; tag basic appris_principal_1 CCDS ; transcript_id "COX19--C7orf50^ENST00000357429.10" ; transcript_name "C7orf50-201" ; transcript_support_level 1 ; transcript_type protein_coding
COX19--C7orf50 HAVANA mRNA 20036 32993 . + . FI_gene_label "C7orf50^ENSG00000146540.15" ; ID "COX19--C7orf50^ENST00000357429.10" ; Parent "COX19--C7orf50^C7orf50^ENSG00000146540.15" ; ccdsid "CCDS5320.1" ; exon_id "ENSE00001034888.1" ; exon_number 2 ; gene_id "COX19--C7orf50^C7orf50^ENSG00000146540.15" ; gene_name C7orf50 ; gene_type protein_coding ; havana_gene "OTTHUMG00000151477.7" ; havana_transcript "OTTHUMT00000322816.2" ; hgnc_id "HGNC:22421" ; level 2 ; orig_coord_info "chr7,1127257,1127385,-" ; protein_id "ENSP00000350011.5" ; tag basic appris_principal_1 CCDS ; transcript_id "COX19--C7orf50^ENST00000357429.10" ; transcript_name "C7orf50-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CPD--RIT1 HAVANA gene 1001 31490 . + . FI_gene_label "CPD^ENSG00000108582.12" ; ID "CPD--RIT1^CPD^ENSG00000108582.12" ; ccdsid "CCDS11257.1" ; exon_id "ENSE00001311861.5" ; exon_number 1 ; gene_id "CPD--RIT1^CPD^ENSG00000108582.12" ; gene_name CPD ; gene_type protein_coding ; havana_gene "OTTHUMG00000132797.6" ; havana_transcript "OTTHUMT00000256214.4" ; hgnc_id "HGNC:2301" ; level 2 ; orig_coord_info "chr17,30378981,30379726,+" ; protein_id "ENSP00000225719.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CPD--RIT1^ENST00000225719.9" ; transcript_name "CPD-201" ; transcript_support_level 1 ; transcript_type protein_coding
CPD--RIT1 HAVANA mRNA 1001 31490 . + . FI_gene_label "CPD^ENSG00000108582.12" ; ID "CPD--RIT1^ENST00000225719.9" ; Parent "CPD--RIT1^CPD^ENSG00000108582.12" ; ccdsid "CCDS11257.1" ; exon_id "ENSE00001311861.5" ; exon_number 1 ; gene_id "CPD--RIT1^CPD^ENSG00000108582.12" ; gene_name CPD ; gene_type protein_coding ; havana_gene "OTTHUMG00000132797.6" ; havana_transcript "OTTHUMT00000256214.4" ; hgnc_id "HGNC:2301" ; level 2 ; orig_coord_info "chr17,30378981,30379726,+" ; protein_id "ENSP00000225719.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CPD--RIT1^ENST00000225719.9" ; transcript_name "CPD-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CPD--RIT1 HAVANA gene 34980 38639 . + . FI_gene_label "RIT1^ENSG00000143622.11" ; ID "CPD--RIT1^RIT1^ENSG00000143622.11" ; ccdsid "CCDS58037.1" ; exon_id "ENSE00001642113.2" ; exon_number 1 ; gene_id "CPD--RIT1^RIT1^ENSG00000143622.11" ; gene_name RIT1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014104.4" ; havana_transcript "OTTHUMT00000039594.1" ; hgnc_id "HGNC:10023" ; level 2 ; orig_coord_info "chr1,155910878,155910885,-" ; protein_id "ENSP00000357305.3" ; tag basic CCDS ; transcript_id "CPD--RIT1^ENST00000368322.7" ; transcript_name "RIT1-201" ; transcript_support_level 3 ; transcript_type protein_coding
CPD--RIT1 HAVANA mRNA 34980 38639 . + . FI_gene_label "RIT1^ENSG00000143622.11" ; ID "CPD--RIT1^ENST00000368322.7" ; Parent "CPD--RIT1^RIT1^ENSG00000143622.11" ; ccdsid "CCDS58037.1" ; exon_id "ENSE00001642113.2" ; exon_number 1 ; gene_id "CPD--RIT1^RIT1^ENSG00000143622.11" ; gene_name RIT1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014104.4" ; havana_transcript "OTTHUMT00000039594.1" ; hgnc_id "HGNC:10023" ; level 2 ; orig_coord_info "chr1,155910878,155910885,-" ; protein_id "ENSP00000357305.3" ; tag basic CCDS ; transcript_id "CPD--RIT1^ENST00000368322.7" ; transcript_name "RIT1-201" ; transcript_support_level 3 ; transcript_type protein_coding
L1 and L2 created:
CPNE3--AC060765.2 HAVANA gene 5993 16038 . + . FI_gene_label "CPNE3^ENSG00000085719.13" ; ID "CPNE3--AC060765.2^CPNE3^ENSG00000085719.13" ; exon_id "ENSE00002138332.1" ; exon_number 1 ; gene_id "CPNE3--AC060765.2^CPNE3^ENSG00000085719.13" ; gene_name CPNE3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163725.7" ; havana_transcript "OTTHUMT00000375102.3" ; hgnc_id "HGNC:2316" ; level 2 ; orig_coord_info "chr8,86529063,86529124,+" ; protein_id "ENSP00000428561.1" ; tag mRNA_start_NF mRNA_end_NF cds_start_NF cds_end_NF ; transcript_id "CPNE3--AC060765.2^ENST00000517391.5" ; transcript_name "CPNE3-202" ; transcript_support_level 3 ; transcript_type protein_coding
CPNE3--AC060765.2 HAVANA mRNA 5993 16038 . + . FI_gene_label "CPNE3^ENSG00000085719.13" ; ID "CPNE3--AC060765.2^ENST00000517391.5" ; Parent "CPNE3--AC060765.2^CPNE3^ENSG00000085719.13" ; exon_id "ENSE00002138332.1" ; exon_number 1 ; gene_id "CPNE3--AC060765.2^CPNE3^ENSG00000085719.13" ; gene_name CPNE3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163725.7" ; havana_transcript "OTTHUMT00000375102.3" ; hgnc_id "HGNC:2316" ; level 2 ; orig_coord_info "chr8,86529063,86529124,+" ; protein_id "ENSP00000428561.1" ; tag mRNA_start_NF mRNA_end_NF cds_start_NF cds_end_NF ; transcript_id "CPNE3--AC060765.2^ENST00000517391.5" ; transcript_name "CPNE3-202" ; transcript_support_level 3 ; transcript_type protein_coding
L1 and L2 created:
DCUN1D2--GRTP1 HAVANA gene 19504 23869 . + . FI_gene_label "GRTP1^ENSG00000139835.14" ; ID "DCUN1D2--GRTP1^GRTP1^ENSG00000139835.14" ; exon_id "ENSE00000940357.5" ; exon_number 1 ; gene_id "DCUN1D2--GRTP1^GRTP1^ENSG00000139835.14" ; gene_name GRTP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000017381.6" ; havana_transcript "OTTHUMT00000045881.3" ; hgnc_id "HGNC:20310" ; level 2 ; orig_coord_info "chr13,113355323,113355428,-" ; protein_id "ENSP00000321850.3" ; tag basic ; transcript_id "DCUN1D2--GRTP1^ENST00000326039.3" ; transcript_name "GRTP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
DCUN1D2--GRTP1 HAVANA mRNA 19504 23869 . + . FI_gene_label "GRTP1^ENSG00000139835.14" ; ID "DCUN1D2--GRTP1^ENST00000326039.3" ; Parent "DCUN1D2--GRTP1^GRTP1^ENSG00000139835.14" ; exon_id "ENSE00000940357.5" ; exon_number 1 ; gene_id "DCUN1D2--GRTP1^GRTP1^ENSG00000139835.14" ; gene_name GRTP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000017381.6" ; havana_transcript "OTTHUMT00000045881.3" ; hgnc_id "HGNC:20310" ; level 2 ; orig_coord_info "chr13,113355323,113355428,-" ; protein_id "ENSP00000321850.3" ; tag basic ; transcript_id "DCUN1D2--GRTP1^ENST00000326039.3" ; transcript_name "GRTP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
DCUN1D2--GRTP1 HAVANA gene 1261 13403 . + . FI_gene_label "DCUN1D2^ENSG00000150401.15" ; ID "DCUN1D2--GRTP1^DCUN1D2^ENSG00000150401.15" ; exon_id "ENSE00003657586.1" ; exon_number 2 ; gene_id "DCUN1D2--GRTP1^DCUN1D2^ENSG00000150401.15" ; gene_name DCUN1D2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000017390.7" ; havana_transcript "OTTHUMT00000045934.2" ; hgnc_id "HGNC:20328" ; level 2 ; orig_coord_info "chr13,113474124,113474244,-" ; protein_id "ENSP00000330629.3" ; tag basic ; transcript_id "DCUN1D2--GRTP1^ENST00000332592.7" ; transcript_name "DCUN1D2-201" ; transcript_support_level 2 ; transcript_type protein_coding
DCUN1D2--GRTP1 HAVANA mRNA 1261 13403 . + . FI_gene_label "DCUN1D2^ENSG00000150401.15" ; ID "DCUN1D2--GRTP1^ENST00000332592.7" ; Parent "DCUN1D2--GRTP1^DCUN1D2^ENSG00000150401.15" ; exon_id "ENSE00003657586.1" ; exon_number 2 ; gene_id "DCUN1D2--GRTP1^DCUN1D2^ENSG00000150401.15" ; gene_name DCUN1D2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000017390.7" ; havana_transcript "OTTHUMT00000045934.2" ; hgnc_id "HGNC:20328" ; level 2 ; orig_coord_info "chr13,113474124,113474244,-" ; protein_id "ENSP00000330629.3" ; tag basic ; transcript_id "DCUN1D2--GRTP1^ENST00000332592.7" ; transcript_name "DCUN1D2-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
DIAPH3--RIOK3P1 HAVANA gene 1163 31013 . + . FI_gene_label "DIAPH3^ENSG00000139734.19" ; ID "DIAPH3--RIOK3P1^DIAPH3^ENSG00000139734.19" ; ccdsid "CCDS58297.1" ; exon_id "ENSE00001251532.6" ; exon_number 1 ; gene_id "DIAPH3--RIOK3P1^DIAPH3^ENSG00000139734.19" ; gene_name DIAPH3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000017004.7" ; havana_transcript "OTTHUMT00000280483.1" ; hgnc_id "HGNC:15480" ; level 2 ; orig_coord_info "chr13,60163587,60163766,-" ; protein_id "ENSP00000267215.4" ; tag basic appris_alternative_2 CCDS ; transcript_id "DIAPH3--RIOK3P1^ENST00000267215.8" ; transcript_name "DIAPH3-201" ; transcript_support_level 1 ; transcript_type protein_coding
DIAPH3--RIOK3P1 HAVANA mRNA 1163 31013 . + . FI_gene_label "DIAPH3^ENSG00000139734.19" ; ID "DIAPH3--RIOK3P1^ENST00000267215.8" ; Parent "DIAPH3--RIOK3P1^DIAPH3^ENSG00000139734.19" ; ccdsid "CCDS58297.1" ; exon_id "ENSE00001251532.6" ; exon_number 1 ; gene_id "DIAPH3--RIOK3P1^DIAPH3^ENSG00000139734.19" ; gene_name DIAPH3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000017004.7" ; havana_transcript "OTTHUMT00000280483.1" ; hgnc_id "HGNC:15480" ; level 2 ; orig_coord_info "chr13,60163587,60163766,-" ; protein_id "ENSP00000267215.4" ; tag basic appris_alternative_2 CCDS ; transcript_id "DIAPH3--RIOK3P1^ENST00000267215.8" ; transcript_name "DIAPH3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
DIAPH3--RNU6-38P HAVANA gene 1163 31013 . + . FI_gene_label "DIAPH3^ENSG00000139734.19" ; ID "DIAPH3--RNU6-38P^DIAPH3^ENSG00000139734.19" ; ccdsid "CCDS58297.1" ; exon_id "ENSE00001251532.6" ; exon_number 1 ; gene_id "DIAPH3--RNU6-38P^DIAPH3^ENSG00000139734.19" ; gene_name DIAPH3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000017004.7" ; havana_transcript "OTTHUMT00000280483.1" ; hgnc_id "HGNC:15480" ; level 2 ; orig_coord_info "chr13,60163587,60163766,-" ; protein_id "ENSP00000267215.4" ; tag basic appris_alternative_2 CCDS ; transcript_id "DIAPH3--RNU6-38P^ENST00000267215.8" ; transcript_name "DIAPH3-201" ; transcript_support_level 1 ; transcript_type protein_coding
DIAPH3--RNU6-38P HAVANA mRNA 1163 31013 . + . FI_gene_label "DIAPH3^ENSG00000139734.19" ; ID "DIAPH3--RNU6-38P^ENST00000267215.8" ; Parent "DIAPH3--RNU6-38P^DIAPH3^ENSG00000139734.19" ; ccdsid "CCDS58297.1" ; exon_id "ENSE00001251532.6" ; exon_number 1 ; gene_id "DIAPH3--RNU6-38P^DIAPH3^ENSG00000139734.19" ; gene_name DIAPH3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000017004.7" ; havana_transcript "OTTHUMT00000280483.1" ; hgnc_id "HGNC:15480" ; level 2 ; orig_coord_info "chr13,60163587,60163766,-" ; protein_id "ENSP00000267215.4" ; tag basic appris_alternative_2 CCDS ; transcript_id "DIAPH3--RNU6-38P^ENST00000267215.8" ; transcript_name "DIAPH3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
FBXW7--SLC39A8 HAVANA gene 1001 26124 . + . FI_gene_label "FBXW7^ENSG00000109670.16" ; ID "FBXW7--SLC39A8^FBXW7^ENSG00000109670.16" ; ccdsid "CCDS3777.1" ; exon_id "ENSE00001200526.4" ; exon_number 4 ; gene_id "FBXW7--SLC39A8^FBXW7^ENSG00000109670.16" ; gene_name FBXW7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000185246.10" ; havana_transcript "OTTHUMT00000469960.5" ; hgnc_id "HGNC:16712" ; level 2 ; orig_coord_info "chr4,152411303,152411803,-" ; protein_id "ENSP00000281708.3" ; tag alternative_5_UTR CAGE_supported_TSS basic MANE_Select CCDS ; transcript_id "FBXW7--SLC39A8^ENST00000281708.10" ; transcript_name "FBXW7-201" ; transcript_support_level 1 ; transcript_type protein_coding
FBXW7--SLC39A8 HAVANA mRNA 1001 26124 . + . FI_gene_label "FBXW7^ENSG00000109670.16" ; ID "FBXW7--SLC39A8^ENST00000281708.10" ; Parent "FBXW7--SLC39A8^FBXW7^ENSG00000109670.16" ; ccdsid "CCDS3777.1" ; exon_id "ENSE00001200526.4" ; exon_number 4 ; gene_id "FBXW7--SLC39A8^FBXW7^ENSG00000109670.16" ; gene_name FBXW7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000185246.10" ; havana_transcript "OTTHUMT00000469960.5" ; hgnc_id "HGNC:16712" ; level 2 ; orig_coord_info "chr4,152411303,152411803,-" ; protein_id "ENSP00000281708.3" ; tag alternative_5_UTR CAGE_supported_TSS basic MANE_Select CCDS ; transcript_id "FBXW7--SLC39A8^ENST00000281708.10" ; transcript_name "FBXW7-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
FBXW7--SLC39A8 HAVANA gene 32630 42993 . + . FI_gene_label "SLC39A8^ENSG00000138821.13" ; ID "FBXW7--SLC39A8^SLC39A8^ENSG00000138821.13" ; ccdsid "CCDS3656.1" ; exon_id "ENSE00001411230.1" ; exon_number 2 ; gene_id "FBXW7--SLC39A8^SLC39A8^ENSG00000138821.13" ; gene_name SLC39A8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000131120.3" ; havana_transcript "OTTHUMT00000253797.2" ; hgnc_id "HGNC:20862" ; level 2 ; orig_coord_info "chr4,102344444,102344662,-" ; protein_id "ENSP00000349174.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "FBXW7--SLC39A8^ENST00000356736.5" ; transcript_name "SLC39A8-201" ; transcript_support_level 1 ; transcript_type protein_coding
FBXW7--SLC39A8 HAVANA mRNA 32630 42993 . + . FI_gene_label "SLC39A8^ENSG00000138821.13" ; ID "FBXW7--SLC39A8^ENST00000356736.5" ; Parent "FBXW7--SLC39A8^SLC39A8^ENSG00000138821.13" ; ccdsid "CCDS3656.1" ; exon_id "ENSE00001411230.1" ; exon_number 2 ; gene_id "FBXW7--SLC39A8^SLC39A8^ENSG00000138821.13" ; gene_name SLC39A8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000131120.3" ; havana_transcript "OTTHUMT00000253797.2" ; hgnc_id "HGNC:20862" ; level 2 ; orig_coord_info "chr4,102344444,102344662,-" ; protein_id "ENSP00000349174.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "FBXW7--SLC39A8^ENST00000356736.5" ; transcript_name "SLC39A8-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
FRS2--GRIP1 HAVANA gene 27204 59701 . + . FI_gene_label "GRIP1^ENSG00000155974.13" ; ID "FRS2--GRIP1^GRIP1^ENSG00000155974.13" ; exon_id "ENSE00003912333.1" ; exon_number 1 ; gene_id "FRS2--GRIP1^GRIP1^ENSG00000155974.13" ; gene_name GRIP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000169019.7" ; hgnc_id "HGNC:18708" ; level 2 ; orig_coord_info "chr12,66678850,66678904,-" ; protein_id "ENSP00000352780.4" ; tag CAGE_supported_TSS basic MANE_Select appris_principal_1 ; transcript_id "FRS2--GRIP1^ENST00000359742.9" ; transcript_name "GRIP1-201" ; transcript_support_level 5 ; transcript_type protein_coding
FRS2--GRIP1 HAVANA mRNA 27204 59701 . + . FI_gene_label "GRIP1^ENSG00000155974.13" ; ID "FRS2--GRIP1^ENST00000359742.9" ; Parent "FRS2--GRIP1^GRIP1^ENSG00000155974.13" ; exon_id "ENSE00003912333.1" ; exon_number 1 ; gene_id "FRS2--GRIP1^GRIP1^ENSG00000155974.13" ; gene_name GRIP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000169019.7" ; hgnc_id "HGNC:18708" ; level 2 ; orig_coord_info "chr12,66678850,66678904,-" ; protein_id "ENSP00000352780.4" ; tag CAGE_supported_TSS basic MANE_Select appris_principal_1 ; transcript_id "FRS2--GRIP1^ENST00000359742.9" ; transcript_name "GRIP1-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
FRS2--GRIP1 ENSEMBL gene 8661 20683 . + . FI_gene_label "FRS2^ENSG00000166225.9" ; ID "FRS2--GRIP1^FRS2^ENSG00000166225.9" ; ccdsid "CCDS41809.1" ; exon_id "ENSE00001101187.1" ; exon_number 3 ; gene_id "FRS2--GRIP1^FRS2^ENSG00000166225.9" ; gene_name FRS2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000169373.3" ; hgnc_id "HGNC:16971" ; level 3 ; orig_coord_info "chr12,69569031,69569096,+" ; protein_id "ENSP00000381083.2" ; tag basic appris_principal_1 CCDS ; transcript_id "FRS2--GRIP1^ENST00000397997.6" ; transcript_name "FRS2-201" ; transcript_support_level 5 ; transcript_type protein_coding
FRS2--GRIP1 ENSEMBL mRNA 8661 20683 . + . FI_gene_label "FRS2^ENSG00000166225.9" ; ID "FRS2--GRIP1^ENST00000397997.6" ; Parent "FRS2--GRIP1^FRS2^ENSG00000166225.9" ; ccdsid "CCDS41809.1" ; exon_id "ENSE00001101187.1" ; exon_number 3 ; gene_id "FRS2--GRIP1^FRS2^ENSG00000166225.9" ; gene_name FRS2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000169373.3" ; hgnc_id "HGNC:16971" ; level 3 ; orig_coord_info "chr12,69569031,69569096,+" ; protein_id "ENSP00000381083.2" ; tag basic appris_principal_1 CCDS ; transcript_id "FRS2--GRIP1^ENST00000397997.6" ; transcript_name "FRS2-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
FRS2--LYZ HAVANA gene 23688 28265 . + . FI_gene_label "LYZ^ENSG00000090382.7" ; ID "FRS2--LYZ^LYZ^ENSG00000090382.7" ; ccdsid "CCDS8989.1" ; exon_id "ENSE00000920754.4" ; exon_number 1 ; gene_id "FRS2--LYZ^LYZ^ENSG00000090382.7" ; gene_name LYZ ; gene_type protein_coding ; havana_gene "OTTHUMG00000169342.3" ; havana_transcript "OTTHUMT00000403624.3" ; hgnc_id "HGNC:6740" ; level 2 ; orig_coord_info "chr12,69348409,69348544,+" ; protein_id "ENSP00000261267.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "FRS2--LYZ^ENST00000261267.7" ; transcript_name "LYZ-201" ; transcript_support_level 1 ; transcript_type protein_coding
FRS2--LYZ HAVANA mRNA 23688 28265 . + . FI_gene_label "LYZ^ENSG00000090382.7" ; ID "FRS2--LYZ^ENST00000261267.7" ; Parent "FRS2--LYZ^LYZ^ENSG00000090382.7" ; ccdsid "CCDS8989.1" ; exon_id "ENSE00000920754.4" ; exon_number 1 ; gene_id "FRS2--LYZ^LYZ^ENSG00000090382.7" ; gene_name LYZ ; gene_type protein_coding ; havana_gene "OTTHUMG00000169342.3" ; havana_transcript "OTTHUMT00000403624.3" ; hgnc_id "HGNC:6740" ; level 2 ; orig_coord_info "chr12,69348409,69348544,+" ; protein_id "ENSP00000261267.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "FRS2--LYZ^ENST00000261267.7" ; transcript_name "LYZ-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
FRS2--LYZ ENSEMBL gene 8661 20683 . + . FI_gene_label "FRS2^ENSG00000166225.9" ; ID "FRS2--LYZ^FRS2^ENSG00000166225.9" ; ccdsid "CCDS41809.1" ; exon_id "ENSE00001101187.1" ; exon_number 3 ; gene_id "FRS2--LYZ^FRS2^ENSG00000166225.9" ; gene_name FRS2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000169373.3" ; hgnc_id "HGNC:16971" ; level 3 ; orig_coord_info "chr12,69569031,69569096,+" ; protein_id "ENSP00000381083.2" ; tag basic appris_principal_1 CCDS ; transcript_id "FRS2--LYZ^ENST00000397997.6" ; transcript_name "FRS2-201" ; transcript_support_level 5 ; transcript_type protein_coding
FRS2--LYZ ENSEMBL mRNA 8661 20683 . + . FI_gene_label "FRS2^ENSG00000166225.9" ; ID "FRS2--LYZ^ENST00000397997.6" ; Parent "FRS2--LYZ^FRS2^ENSG00000166225.9" ; ccdsid "CCDS41809.1" ; exon_id "ENSE00001101187.1" ; exon_number 3 ; gene_id "FRS2--LYZ^FRS2^ENSG00000166225.9" ; gene_name FRS2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000169373.3" ; hgnc_id "HGNC:16971" ; level 3 ; orig_coord_info "chr12,69569031,69569096,+" ; protein_id "ENSP00000381083.2" ; tag basic appris_principal_1 CCDS ; transcript_id "FRS2--LYZ^ENST00000397997.6" ; transcript_name "FRS2-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
GRIP1--CPSF6 HAVANA gene 40062 51992 . + . FI_gene_label "CPSF6^ENSG00000111605.18" ; ID "GRIP1--CPSF6^CPSF6^ENSG00000111605.18" ; ccdsid "CCDS73494.1" ; exon_id "ENSE00002424959.1" ; exon_number 1 ; gene_id "GRIP1--CPSF6^CPSF6^ENSG00000111605.18" ; gene_name CPSF6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000169340.4" ; havana_transcript "OTTHUMT00000403613.1" ; hgnc_id "HGNC:13871" ; level 2 ; orig_coord_info "chr12,69239647,69239706,+" ; protein_id "ENSP00000266679.8" ; tag basic appris_alternative_1 CCDS ; transcript_id "GRIP1--CPSF6^ENST00000266679.8" ; transcript_name "CPSF6-201" ; transcript_support_level 1 ; transcript_type protein_coding
GRIP1--CPSF6 HAVANA mRNA 40062 51992 . + . FI_gene_label "CPSF6^ENSG00000111605.18" ; ID "GRIP1--CPSF6^ENST00000266679.8" ; Parent "GRIP1--CPSF6^CPSF6^ENSG00000111605.18" ; ccdsid "CCDS73494.1" ; exon_id "ENSE00002424959.1" ; exon_number 1 ; gene_id "GRIP1--CPSF6^CPSF6^ENSG00000111605.18" ; gene_name CPSF6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000169340.4" ; havana_transcript "OTTHUMT00000403613.1" ; hgnc_id "HGNC:13871" ; level 2 ; orig_coord_info "chr12,69239647,69239706,+" ; protein_id "ENSP00000266679.8" ; tag basic appris_alternative_1 CCDS ; transcript_id "GRIP1--CPSF6^ENST00000266679.8" ; transcript_name "CPSF6-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
GRIP1--CPSF6 HAVANA gene 4517 37014 . + . FI_gene_label "GRIP1^ENSG00000155974.13" ; ID "GRIP1--CPSF6^GRIP1^ENSG00000155974.13" ; exon_id "ENSE00003912333.1" ; exon_number 1 ; gene_id "GRIP1--CPSF6^GRIP1^ENSG00000155974.13" ; gene_name GRIP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000169019.7" ; hgnc_id "HGNC:18708" ; level 2 ; orig_coord_info "chr12,66678850,66678904,-" ; protein_id "ENSP00000352780.4" ; tag CAGE_supported_TSS basic MANE_Select appris_principal_1 ; transcript_id "GRIP1--CPSF6^ENST00000359742.9" ; transcript_name "GRIP1-201" ; transcript_support_level 5 ; transcript_type protein_coding
GRIP1--CPSF6 HAVANA mRNA 4517 37014 . + . FI_gene_label "GRIP1^ENSG00000155974.13" ; ID "GRIP1--CPSF6^ENST00000359742.9" ; Parent "GRIP1--CPSF6^GRIP1^ENSG00000155974.13" ; exon_id "ENSE00003912333.1" ; exon_number 1 ; gene_id "GRIP1--CPSF6^GRIP1^ENSG00000155974.13" ; gene_name GRIP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000169019.7" ; hgnc_id "HGNC:18708" ; level 2 ; orig_coord_info "chr12,66678850,66678904,-" ; protein_id "ENSP00000352780.4" ; tag CAGE_supported_TSS basic MANE_Select appris_principal_1 ; transcript_id "GRIP1--CPSF6^ENST00000359742.9" ; transcript_name "GRIP1-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
GRIP1--NUP107 HAVANA gene 40042 70205 . + . FI_gene_label "NUP107^ENSG00000111581.10" ; ID "GRIP1--NUP107^NUP107^ENSG00000111581.10" ; ccdsid "CCDS8985.1" ; exon_id "ENSE00002321492.2" ; exon_number 1 ; gene_id "GRIP1--NUP107^NUP107^ENSG00000111581.10" ; gene_name NUP107 ; gene_type protein_coding ; havana_gene "OTTHUMG00000169265.4" ; havana_transcript "OTTHUMT00000403195.3" ; hgnc_id "HGNC:29914" ; level 2 ; orig_coord_info "chr12,68687066,68687073,+" ; protein_id "ENSP00000229179.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "GRIP1--NUP107^ENST00000229179.9" ; transcript_name "NUP107-201" ; transcript_support_level 1 ; transcript_type protein_coding
GRIP1--NUP107 HAVANA mRNA 40042 70205 . + . FI_gene_label "NUP107^ENSG00000111581.10" ; ID "GRIP1--NUP107^ENST00000229179.9" ; Parent "GRIP1--NUP107^NUP107^ENSG00000111581.10" ; ccdsid "CCDS8985.1" ; exon_id "ENSE00002321492.2" ; exon_number 1 ; gene_id "GRIP1--NUP107^NUP107^ENSG00000111581.10" ; gene_name NUP107 ; gene_type protein_coding ; havana_gene "OTTHUMG00000169265.4" ; havana_transcript "OTTHUMT00000403195.3" ; hgnc_id "HGNC:29914" ; level 2 ; orig_coord_info "chr12,68687066,68687073,+" ; protein_id "ENSP00000229179.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "GRIP1--NUP107^ENST00000229179.9" ; transcript_name "NUP107-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
GRIP1--NUP107 HAVANA gene 4517 37014 . + . FI_gene_label "GRIP1^ENSG00000155974.13" ; ID "GRIP1--NUP107^GRIP1^ENSG00000155974.13" ; exon_id "ENSE00003912333.1" ; exon_number 1 ; gene_id "GRIP1--NUP107^GRIP1^ENSG00000155974.13" ; gene_name GRIP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000169019.7" ; hgnc_id "HGNC:18708" ; level 2 ; orig_coord_info "chr12,66678850,66678904,-" ; protein_id "ENSP00000352780.4" ; tag CAGE_supported_TSS basic MANE_Select appris_principal_1 ; transcript_id "GRIP1--NUP107^ENST00000359742.9" ; transcript_name "GRIP1-201" ; transcript_support_level 5 ; transcript_type protein_coding
GRIP1--NUP107 HAVANA mRNA 4517 37014 . + . FI_gene_label "GRIP1^ENSG00000155974.13" ; ID "GRIP1--NUP107^ENST00000359742.9" ; Parent "GRIP1--NUP107^GRIP1^ENSG00000155974.13" ; exon_id "ENSE00003912333.1" ; exon_number 1 ; gene_id "GRIP1--NUP107^GRIP1^ENSG00000155974.13" ; gene_name GRIP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000169019.7" ; hgnc_id "HGNC:18708" ; level 2 ; orig_coord_info "chr12,66678850,66678904,-" ; protein_id "ENSP00000352780.4" ; tag CAGE_supported_TSS basic MANE_Select appris_principal_1 ; transcript_id "GRIP1--NUP107^ENST00000359742.9" ; transcript_name "GRIP1-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
GTF2IRD1--POM121 HAVANA gene 1001 30976 . + . FI_gene_label "GTF2IRD1^ENSG00000006704.11" ; ID "GTF2IRD1--POM121^GTF2IRD1^ENSG00000006704.11" ; ccdsid "CCDS5571.1" ; exon_id "ENSE00003523203.1" ; exon_number 2 ; gene_id "GTF2IRD1--POM121^GTF2IRD1^ENSG00000006704.11" ; gene_name GTF2IRD1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000023782.4" ; havana_transcript "OTTHUMT00000252654.2" ; hgnc_id "HGNC:4661" ; level 2 ; orig_coord_info "chr7,74508081,74508203,+" ; protein_id "ENSP00000265755.3" ; tag basic CCDS ; transcript_id "GTF2IRD1--POM121^ENST00000265755.7" ; transcript_name "GTF2IRD1-201" ; transcript_support_level 1 ; transcript_type protein_coding
GTF2IRD1--POM121 HAVANA mRNA 1001 30976 . + . FI_gene_label "GTF2IRD1^ENSG00000006704.11" ; ID "GTF2IRD1--POM121^ENST00000265755.7" ; Parent "GTF2IRD1--POM121^GTF2IRD1^ENSG00000006704.11" ; ccdsid "CCDS5571.1" ; exon_id "ENSE00003523203.1" ; exon_number 2 ; gene_id "GTF2IRD1--POM121^GTF2IRD1^ENSG00000006704.11" ; gene_name GTF2IRD1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000023782.4" ; havana_transcript "OTTHUMT00000252654.2" ; hgnc_id "HGNC:4661" ; level 2 ; orig_coord_info "chr7,74508081,74508203,+" ; protein_id "ENSP00000265755.3" ; tag basic CCDS ; transcript_id "GTF2IRD1--POM121^ENST00000265755.7" ; transcript_name "GTF2IRD1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
GTF2IRD1--POM121 HAVANA gene 35848 51802 . + . FI_gene_label "POM121^ENSG00000196313.11" ; ID "GTF2IRD1--POM121^POM121^ENSG00000196313.11" ; ccdsid "CCDS5542.1" ; exon_id "ENSE00003531651.1" ; exon_number 2 ; gene_id "GTF2IRD1--POM121^POM121^ENSG00000196313.11" ; gene_name POM121 ; gene_type protein_coding ; havana_gene "OTTHUMG00000023527.5" ; havana_transcript "OTTHUMT00000252021.2" ; hgnc_id "HGNC:19702" ; level 2 ; orig_coord_info "chr7,72926413,72926477,+" ; protein_id "ENSP00000351124.3" ; tag basic appris_alternative_2 CCDS ; transcript_id "GTF2IRD1--POM121^ENST00000358357.7" ; transcript_name "POM121-201" ; transcript_support_level 1 ; transcript_type protein_coding
GTF2IRD1--POM121 HAVANA mRNA 35848 51802 . + . FI_gene_label "POM121^ENSG00000196313.11" ; ID "GTF2IRD1--POM121^ENST00000358357.7" ; Parent "GTF2IRD1--POM121^POM121^ENSG00000196313.11" ; ccdsid "CCDS5542.1" ; exon_id "ENSE00003531651.1" ; exon_number 2 ; gene_id "GTF2IRD1--POM121^POM121^ENSG00000196313.11" ; gene_name POM121 ; gene_type protein_coding ; havana_gene "OTTHUMG00000023527.5" ; havana_transcript "OTTHUMT00000252021.2" ; hgnc_id "HGNC:19702" ; level 2 ; orig_coord_info "chr7,72926413,72926477,+" ; protein_id "ENSP00000351124.3" ; tag basic appris_alternative_2 CCDS ; transcript_id "GTF2IRD1--POM121^ENST00000358357.7" ; transcript_name "POM121-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
HELB--GRIP1 HAVANA gene 1001 16483 . + . FI_gene_label "HELB^ENSG00000127311.10" ; ID "HELB--GRIP1^HELB^ENSG00000127311.10" ; ccdsid "CCDS8976.1" ; exon_id "ENSE00002312419.2" ; exon_number 1 ; gene_id "HELB--GRIP1^HELB^ENSG00000127311.10" ; gene_name HELB ; gene_type protein_coding ; havana_gene "OTTHUMG00000169006.2" ; havana_transcript "OTTHUMT00000401919.2" ; hgnc_id "HGNC:17196" ; level 2 ; orig_coord_info "chr12,66302604,66302790,+" ; protein_id "ENSP00000247815.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "HELB--GRIP1^ENST00000247815.9" ; transcript_name "HELB-201" ; transcript_support_level 1 ; transcript_type protein_coding
HELB--GRIP1 HAVANA mRNA 1001 16483 . + . FI_gene_label "HELB^ENSG00000127311.10" ; ID "HELB--GRIP1^ENST00000247815.9" ; Parent "HELB--GRIP1^HELB^ENSG00000127311.10" ; ccdsid "CCDS8976.1" ; exon_id "ENSE00002312419.2" ; exon_number 1 ; gene_id "HELB--GRIP1^HELB^ENSG00000127311.10" ; gene_name HELB ; gene_type protein_coding ; havana_gene "OTTHUMG00000169006.2" ; havana_transcript "OTTHUMT00000401919.2" ; hgnc_id "HGNC:17196" ; level 2 ; orig_coord_info "chr12,66302604,66302790,+" ; protein_id "ENSP00000247815.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "HELB--GRIP1^ENST00000247815.9" ; transcript_name "HELB-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
HELB--GRIP1 HAVANA gene 24201 56698 . + . FI_gene_label "GRIP1^ENSG00000155974.13" ; ID "HELB--GRIP1^GRIP1^ENSG00000155974.13" ; exon_id "ENSE00003912333.1" ; exon_number 1 ; gene_id "HELB--GRIP1^GRIP1^ENSG00000155974.13" ; gene_name GRIP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000169019.7" ; hgnc_id "HGNC:18708" ; level 2 ; orig_coord_info "chr12,66678850,66678904,-" ; protein_id "ENSP00000352780.4" ; tag CAGE_supported_TSS basic MANE_Select appris_principal_1 ; transcript_id "HELB--GRIP1^ENST00000359742.9" ; transcript_name "GRIP1-201" ; transcript_support_level 5 ; transcript_type protein_coding
HELB--GRIP1 HAVANA mRNA 24201 56698 . + . FI_gene_label "GRIP1^ENSG00000155974.13" ; ID "HELB--GRIP1^ENST00000359742.9" ; Parent "HELB--GRIP1^GRIP1^ENSG00000155974.13" ; exon_id "ENSE00003912333.1" ; exon_number 1 ; gene_id "HELB--GRIP1^GRIP1^ENSG00000155974.13" ; gene_name GRIP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000169019.7" ; hgnc_id "HGNC:18708" ; level 2 ; orig_coord_info "chr12,66678850,66678904,-" ; protein_id "ENSP00000352780.4" ; tag CAGE_supported_TSS basic MANE_Select appris_principal_1 ; transcript_id "HELB--GRIP1^ENST00000359742.9" ; transcript_name "GRIP1-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
ITGB6--RBMS1 HAVANA gene 1042 19338 . + . FI_gene_label "ITGB6^ENSG00000115221.12" ; ID "ITGB6--RBMS1^ITGB6^ENSG00000115221.12" ; ccdsid "CCDS2212.1" ; exon_id "ENSE00001900255.2" ; exon_number 1 ; gene_id "ITGB6--RBMS1^ITGB6^ENSG00000115221.12" ; gene_name ITGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132026.8" ; havana_transcript "OTTHUMT00000255036.2" ; hgnc_id "HGNC:6161" ; level 2 ; orig_coord_info "chr2,160200003,160200063,-" ; protein_id "ENSP00000283249.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ITGB6--RBMS1^ENST00000283249.7" ; transcript_name "ITGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
ITGB6--RBMS1 HAVANA mRNA 1042 19338 . + . FI_gene_label "ITGB6^ENSG00000115221.12" ; ID "ITGB6--RBMS1^ENST00000283249.7" ; Parent "ITGB6--RBMS1^ITGB6^ENSG00000115221.12" ; ccdsid "CCDS2212.1" ; exon_id "ENSE00001900255.2" ; exon_number 1 ; gene_id "ITGB6--RBMS1^ITGB6^ENSG00000115221.12" ; gene_name ITGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132026.8" ; havana_transcript "OTTHUMT00000255036.2" ; hgnc_id "HGNC:6161" ; level 2 ; orig_coord_info "chr2,160200003,160200063,-" ; protein_id "ENSP00000283249.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ITGB6--RBMS1^ENST00000283249.7" ; transcript_name "ITGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ITGB6--RBMS1 HAVANA gene 22343 49987 . + . FI_gene_label "RBMS1^ENSG00000153250.20" ; ID "ITGB6--RBMS1^RBMS1^ENSG00000153250.20" ; ccdsid "CCDS2213.1" ; exon_id "ENSE00002037352.2" ; exon_number 1 ; gene_id "ITGB6--RBMS1^RBMS1^ENSG00000153250.20" ; gene_name RBMS1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132031.10" ; havana_transcript "OTTHUMT00000255043.5" ; hgnc_id "HGNC:9907" ; level 2 ; orig_coord_info "chr2,160493289,160493363,-" ; protein_id "ENSP00000294904.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ITGB6--RBMS1^ENST00000348849.8" ; transcript_name "RBMS1-201" ; transcript_support_level 1 ; transcript_type protein_coding
ITGB6--RBMS1 HAVANA mRNA 22343 49987 . + . FI_gene_label "RBMS1^ENSG00000153250.20" ; ID "ITGB6--RBMS1^ENST00000348849.8" ; Parent "ITGB6--RBMS1^RBMS1^ENSG00000153250.20" ; ccdsid "CCDS2213.1" ; exon_id "ENSE00002037352.2" ; exon_number 1 ; gene_id "ITGB6--RBMS1^RBMS1^ENSG00000153250.20" ; gene_name RBMS1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132031.10" ; havana_transcript "OTTHUMT00000255043.5" ; hgnc_id "HGNC:9907" ; level 2 ; orig_coord_info "chr2,160493289,160493363,-" ; protein_id "ENSP00000294904.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ITGB6--RBMS1^ENST00000348849.8" ; transcript_name "RBMS1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
JUP--P3H4 HAVANA gene 1234 16167 . + . FI_gene_label "JUP^ENSG00000173801.17" ; ID "JUP--P3H4^JUP^ENSG00000173801.17" ; ccdsid "CCDS11407.1" ; exon_id "ENSE00002523385.1" ; exon_number 2 ; gene_id "JUP--P3H4^JUP^ENSG00000173801.17" ; gene_name JUP ; gene_type protein_coding ; havana_gene "OTTHUMG00000133494.10" ; havana_transcript "OTTHUMT00000257399.1" ; hgnc_id "HGNC:6207" ; level 2 ; orig_coord_info "chr17,41771647,41771854,-" ; protein_id "ENSP00000311113.5" ; tag basic appris_principal_1 CCDS ; transcript_id "JUP--P3H4^ENST00000310706.9" ; transcript_name "JUP-201" ; transcript_support_level 1 ; transcript_type protein_coding
JUP--P3H4 HAVANA mRNA 1234 16167 . + . FI_gene_label "JUP^ENSG00000173801.17" ; ID "JUP--P3H4^ENST00000310706.9" ; Parent "JUP--P3H4^JUP^ENSG00000173801.17" ; ccdsid "CCDS11407.1" ; exon_id "ENSE00002523385.1" ; exon_number 2 ; gene_id "JUP--P3H4^JUP^ENSG00000173801.17" ; gene_name JUP ; gene_type protein_coding ; havana_gene "OTTHUMG00000133494.10" ; havana_transcript "OTTHUMT00000257399.1" ; hgnc_id "HGNC:6207" ; level 2 ; orig_coord_info "chr17,41771647,41771854,-" ; protein_id "ENSP00000311113.5" ; tag basic appris_principal_1 CCDS ; transcript_id "JUP--P3H4^ENST00000310706.9" ; transcript_name "JUP-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
JUP--P3H4 HAVANA gene 19169 26760 . + . FI_gene_label "P3H4^ENSG00000141696.13" ; ID "JUP--P3H4^P3H4^ENSG00000141696.13" ; ccdsid "CCDS11408.1" ; exon_id "ENSE00001404867.3" ; exon_number 2 ; gene_id "JUP--P3H4^P3H4^ENSG00000141696.13" ; gene_name P3H4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133501.8" ; havana_transcript "OTTHUMT00000257439.2" ; hgnc_id "HGNC:16946" ; level 2 ; orig_coord_info "chr17,41811454,41811915,-" ; protein_id "ENSP00000347649.2" ; tag basic appris_principal_1 CCDS ; transcript_id "JUP--P3H4^ENST00000355468.7" ; transcript_name "P3H4-201" ; transcript_support_level 2 ; transcript_type protein_coding
JUP--P3H4 HAVANA mRNA 19169 26760 . + . FI_gene_label "P3H4^ENSG00000141696.13" ; ID "JUP--P3H4^ENST00000355468.7" ; Parent "JUP--P3H4^P3H4^ENSG00000141696.13" ; ccdsid "CCDS11408.1" ; exon_id "ENSE00001404867.3" ; exon_number 2 ; gene_id "JUP--P3H4^P3H4^ENSG00000141696.13" ; gene_name P3H4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133501.8" ; havana_transcript "OTTHUMT00000257439.2" ; hgnc_id "HGNC:16946" ; level 2 ; orig_coord_info "chr17,41811454,41811915,-" ; protein_id "ENSP00000347649.2" ; tag basic appris_principal_1 CCDS ; transcript_id "JUP--P3H4^ENST00000355468.7" ; transcript_name "P3H4-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
KANSL1--ARL17B HAVANA gene 7306 43177 . + . FI_gene_label "KANSL1^ENSG00000120071.15" ; ID "KANSL1--ARL17B^KANSL1^ENSG00000120071.15" ; ccdsid "CCDS11503.2" ; exon_id "ENSE00003614505.1" ; exon_number 2 ; gene_id "KANSL1--ARL17B^KANSL1^ENSG00000120071.15" ; gene_name KANSL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000178026.11" ; havana_transcript "OTTHUMT00000440274.2" ; hgnc_id "HGNC:24565" ; level 2 ; orig_coord_info "chr17,46170855,46172143,-" ; protein_id "ENSP00000262419.6" ; tag alternative_5_UTR NAGNAG_splice_site basic CCDS ; transcript_id "KANSL1--ARL17B^ENST00000262419.10" ; transcript_name "KANSL1-201" ; transcript_support_level 1 ; transcript_type protein_coding
KANSL1--ARL17B HAVANA mRNA 7306 43177 . + . FI_gene_label "KANSL1^ENSG00000120071.15" ; ID "KANSL1--ARL17B^ENST00000262419.10" ; Parent "KANSL1--ARL17B^KANSL1^ENSG00000120071.15" ; ccdsid "CCDS11503.2" ; exon_id "ENSE00003614505.1" ; exon_number 2 ; gene_id "KANSL1--ARL17B^KANSL1^ENSG00000120071.15" ; gene_name KANSL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000178026.11" ; havana_transcript "OTTHUMT00000440274.2" ; hgnc_id "HGNC:24565" ; level 2 ; orig_coord_info "chr17,46170855,46172143,-" ; protein_id "ENSP00000262419.6" ; tag alternative_5_UTR NAGNAG_splice_site basic CCDS ; transcript_id "KANSL1--ARL17B^ENST00000262419.10" ; transcript_name "KANSL1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
KANSL1--ARL17B HAVANA gene 46270 61341 . + . FI_gene_label "ARL17B^ENSG00000228696.10" ; ID "KANSL1--ARL17B^ARL17B^ENSG00000228696.10" ; ccdsid "CCDS54137.1" ; exon_id "ENSE00002352294.1" ; exon_number 2 ; gene_id "KANSL1--ARL17B^ARL17B^ENSG00000228696.10" ; gene_name ARL17B ; gene_type protein_coding ; havana_gene "OTTHUMG00000178031.2" ; havana_transcript "OTTHUMT00000440292.1" ; hgnc_id "HGNC:32387" ; level 2 ; orig_coord_info "chr17,46358250,46358397,-" ; protein_id "ENSP00000391751.2" ; tag basic CCDS ; transcript_id "KANSL1--ARL17B^ENST00000434041.6" ; transcript_name "ARL17B-201" ; transcript_support_level 1 ; transcript_type protein_coding
KANSL1--ARL17B HAVANA mRNA 46270 61341 . + . FI_gene_label "ARL17B^ENSG00000228696.10" ; ID "KANSL1--ARL17B^ENST00000434041.6" ; Parent "KANSL1--ARL17B^ARL17B^ENSG00000228696.10" ; ccdsid "CCDS54137.1" ; exon_id "ENSE00002352294.1" ; exon_number 2 ; gene_id "KANSL1--ARL17B^ARL17B^ENSG00000228696.10" ; gene_name ARL17B ; gene_type protein_coding ; havana_gene "OTTHUMG00000178031.2" ; havana_transcript "OTTHUMT00000440292.1" ; hgnc_id "HGNC:32387" ; level 2 ; orig_coord_info "chr17,46358250,46358397,-" ; protein_id "ENSP00000391751.2" ; tag basic CCDS ; transcript_id "KANSL1--ARL17B^ENST00000434041.6" ; transcript_name "ARL17B-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
LINC02408--GRIP1 HAVANA gene 17614 50111 . + . FI_gene_label "GRIP1^ENSG00000155974.13" ; ID "LINC02408--GRIP1^GRIP1^ENSG00000155974.13" ; exon_id "ENSE00003912333.1" ; exon_number 1 ; gene_id "LINC02408--GRIP1^GRIP1^ENSG00000155974.13" ; gene_name GRIP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000169019.7" ; hgnc_id "HGNC:18708" ; level 2 ; orig_coord_info "chr12,66678850,66678904,-" ; protein_id "ENSP00000352780.4" ; tag CAGE_supported_TSS basic MANE_Select appris_principal_1 ; transcript_id "LINC02408--GRIP1^ENST00000359742.9" ; transcript_name "GRIP1-201" ; transcript_support_level 5 ; transcript_type protein_coding
LINC02408--GRIP1 HAVANA mRNA 17614 50111 . + . FI_gene_label "GRIP1^ENSG00000155974.13" ; ID "LINC02408--GRIP1^ENST00000359742.9" ; Parent "LINC02408--GRIP1^GRIP1^ENSG00000155974.13" ; exon_id "ENSE00003912333.1" ; exon_number 1 ; gene_id "LINC02408--GRIP1^GRIP1^ENSG00000155974.13" ; gene_name GRIP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000169019.7" ; hgnc_id "HGNC:18708" ; level 2 ; orig_coord_info "chr12,66678850,66678904,-" ; protein_id "ENSP00000352780.4" ; tag CAGE_supported_TSS basic MANE_Select appris_principal_1 ; transcript_id "LINC02408--GRIP1^ENST00000359742.9" ; transcript_name "GRIP1-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
MARK4--BRSK1 HAVANA gene 1001 20560 . + . FI_gene_label "MARK4^ENSG00000007047.15" ; ID "MARK4--BRSK1^MARK4^ENSG00000007047.15" ; ccdsid "CCDS56097.1" ; exon_id "ENSE00002767256.2" ; exon_number 1 ; gene_id "MARK4--BRSK1^MARK4^ENSG00000007047.15" ; gene_name MARK4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000181769.3" ; havana_transcript "OTTHUMT00000457537.2" ; hgnc_id "HGNC:13538" ; level 2 ; orig_coord_info "chr19,45251589,45251639,+" ; protein_id "ENSP00000262891.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MARK4--BRSK1^ENST00000262891.9" ; transcript_name "MARK4-201" ; transcript_support_level 1 ; transcript_type protein_coding
MARK4--BRSK1 HAVANA mRNA 1001 20560 . + . FI_gene_label "MARK4^ENSG00000007047.15" ; ID "MARK4--BRSK1^ENST00000262891.9" ; Parent "MARK4--BRSK1^MARK4^ENSG00000007047.15" ; ccdsid "CCDS56097.1" ; exon_id "ENSE00002767256.2" ; exon_number 1 ; gene_id "MARK4--BRSK1^MARK4^ENSG00000007047.15" ; gene_name MARK4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000181769.3" ; havana_transcript "OTTHUMT00000457537.2" ; hgnc_id "HGNC:13538" ; level 2 ; orig_coord_info "chr19,45251589,45251639,+" ; protein_id "ENSP00000262891.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MARK4--BRSK1^ENST00000262891.9" ; transcript_name "MARK4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MARK4--BRSK1 HAVANA gene 24729 38560 . + . FI_gene_label "BRSK1^ENSG00000160469.17" ; ID "MARK4--BRSK1^BRSK1^ENSG00000160469.17" ; ccdsid "CCDS12921.1" ; exon_id "ENSE00001355906.2" ; exon_number 1 ; gene_id "MARK4--BRSK1^BRSK1^ENSG00000160469.17" ; gene_name BRSK1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000180735.5" ; havana_transcript "OTTHUMT00000452787.2" ; hgnc_id "HGNC:18994" ; level 2 ; orig_coord_info "chr19,55284443,55284578,+" ; protein_id "ENSP00000310649.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MARK4--BRSK1^ENST00000309383.6" ; transcript_name "BRSK1-201" ; transcript_support_level 1 ; transcript_type protein_coding
MARK4--BRSK1 HAVANA mRNA 24729 38560 . + . FI_gene_label "BRSK1^ENSG00000160469.17" ; ID "MARK4--BRSK1^ENST00000309383.6" ; Parent "MARK4--BRSK1^BRSK1^ENSG00000160469.17" ; ccdsid "CCDS12921.1" ; exon_id "ENSE00001355906.2" ; exon_number 1 ; gene_id "MARK4--BRSK1^BRSK1^ENSG00000160469.17" ; gene_name BRSK1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000180735.5" ; havana_transcript "OTTHUMT00000452787.2" ; hgnc_id "HGNC:18994" ; level 2 ; orig_coord_info "chr19,55284443,55284578,+" ; protein_id "ENSP00000310649.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MARK4--BRSK1^ENST00000309383.6" ; transcript_name "BRSK1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MIA2--AL049828.1 HAVANA gene 2434 9306 . + . FI_gene_label "MIA2^ENSG00000150527.17" ; ID "MIA2--AL049828.1^MIA2^ENSG00000150527.17" ; ccdsid "CCDS9672.1" ; exon_id "ENSE00001092436.3" ; exon_number 1 ; gene_id "MIA2--AL049828.1^MIA2^ENSG00000150527.17" ; gene_name MIA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000028831.7" ; havana_transcript "OTTHUMT00000276768.4" ; hgnc_id "HGNC:18432" ; level 1 ; orig_coord_info "chr14,39234115,39234229,+" ; protein_id "ENSP00000280082.3" ; tag basic exp_conf CCDS ; transcript_id "MIA2--AL049828.1^ENST00000280082.4" ; transcript_name "MIA2-201" ; transcript_support_level 1 ; transcript_type protein_coding
MIA2--AL049828.1 HAVANA mRNA 2434 9306 . + . FI_gene_label "MIA2^ENSG00000150527.17" ; ID "MIA2--AL049828.1^ENST00000280082.4" ; Parent "MIA2--AL049828.1^MIA2^ENSG00000150527.17" ; ccdsid "CCDS9672.1" ; exon_id "ENSE00001092436.3" ; exon_number 1 ; gene_id "MIA2--AL049828.1^MIA2^ENSG00000150527.17" ; gene_name MIA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000028831.7" ; havana_transcript "OTTHUMT00000276768.4" ; hgnc_id "HGNC:18432" ; level 1 ; orig_coord_info "chr14,39234115,39234229,+" ; protein_id "ENSP00000280082.3" ; tag basic exp_conf CCDS ; transcript_id "MIA2--AL049828.1^ENST00000280082.4" ; transcript_name "MIA2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NBPF14--GNG12 HAVANA gene 69708 77422 . + . FI_gene_label "GNG12^ENSG00000172380.6" ; ID "NBPF14--GNG12^GNG12^ENSG00000172380.6" ; ccdsid "CCDS30749.1" ; exon_id "ENSE00001454051.1" ; exon_number 3 ; gene_id "NBPF14--GNG12^GNG12^ENSG00000172380.6" ; gene_name GNG12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000009545.3" ; havana_transcript "OTTHUMT00000026355.3" ; hgnc_id "HGNC:19663" ; level 2 ; orig_coord_info "chr1,67707594,67707686,-" ; protein_id "ENSP00000360021.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NBPF14--GNG12^ENST00000370982.4" ; transcript_name "GNG12-201" ; transcript_support_level 1 ; transcript_type protein_coding
NBPF14--GNG12 HAVANA mRNA 69708 77422 . + . FI_gene_label "GNG12^ENSG00000172380.6" ; ID "NBPF14--GNG12^ENST00000370982.4" ; Parent "NBPF14--GNG12^GNG12^ENSG00000172380.6" ; ccdsid "CCDS30749.1" ; exon_id "ENSE00001454051.1" ; exon_number 3 ; gene_id "NBPF14--GNG12^GNG12^ENSG00000172380.6" ; gene_name GNG12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000009545.3" ; havana_transcript "OTTHUMT00000026355.3" ; hgnc_id "HGNC:19663" ; level 2 ; orig_coord_info "chr1,67707594,67707686,-" ; protein_id "ENSP00000360021.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NBPF14--GNG12^ENST00000370982.4" ; transcript_name "GNG12-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NBPF14--GNG12 ENSEMBL gene 7495 65113 . + . FI_gene_label "NBPF14^ENSG00000270629.6" ; ID "NBPF14--GNG12^NBPF14^ENSG00000270629.6" ; exon_id "ENSE00003498069.1" ; exon_number 2 ; gene_id "NBPF14--GNG12^NBPF14^ENSG00000270629.6" ; gene_name NBPF14 ; gene_type protein_coding ; havana_gene "OTTHUMG00000188198.5" ; hgnc_id "HGNC:25232" ; level 3 ; orig_coord_info "chr1,148595543,148595717,-" ; protein_id "ENSP00000463341.1" ; tag basic ; transcript_id "NBPF14--GNG12^ENST00000581201.5" ; transcript_name "NBPF14-201" ; transcript_support_level 5 ; transcript_type protein_coding
NBPF14--GNG12 ENSEMBL mRNA 7495 65113 . + . FI_gene_label "NBPF14^ENSG00000270629.6" ; ID "NBPF14--GNG12^ENST00000581201.5" ; Parent "NBPF14--GNG12^NBPF14^ENSG00000270629.6" ; exon_id "ENSE00003498069.1" ; exon_number 2 ; gene_id "NBPF14--GNG12^NBPF14^ENSG00000270629.6" ; gene_name NBPF14 ; gene_type protein_coding ; havana_gene "OTTHUMG00000188198.5" ; hgnc_id "HGNC:25232" ; level 3 ; orig_coord_info "chr1,148595543,148595717,-" ; protein_id "ENSP00000463341.1" ; tag basic ; transcript_id "NBPF14--GNG12^ENST00000581201.5" ; transcript_name "NBPF14-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
NOTCH2--GNG12 HAVANA gene 8089 55985 . + . FI_gene_label "NOTCH2^ENSG00000134250.20" ; ID "NOTCH2--GNG12^NOTCH2^ENSG00000134250.20" ; ccdsid "CCDS908.1" ; exon_id "ENSE00003518443.2" ; exon_number 1 ; gene_id "NOTCH2--GNG12^NOTCH2^ENSG00000134250.20" ; gene_name NOTCH2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000012177.8" ; havana_transcript "OTTHUMT00000033679.3" ; hgnc_id "HGNC:7882" ; level 2 ; orig_coord_info "chr1,120069334,120069406,-" ; protein_id "ENSP00000256646.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NOTCH2--GNG12^ENST00000256646.7" ; transcript_name "NOTCH2-201" ; transcript_support_level 1 ; transcript_type protein_coding
NOTCH2--GNG12 HAVANA mRNA 8089 55985 . + . FI_gene_label "NOTCH2^ENSG00000134250.20" ; ID "NOTCH2--GNG12^ENST00000256646.7" ; Parent "NOTCH2--GNG12^NOTCH2^ENSG00000134250.20" ; ccdsid "CCDS908.1" ; exon_id "ENSE00003518443.2" ; exon_number 1 ; gene_id "NOTCH2--GNG12^NOTCH2^ENSG00000134250.20" ; gene_name NOTCH2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000012177.8" ; havana_transcript "OTTHUMT00000033679.3" ; hgnc_id "HGNC:7882" ; level 2 ; orig_coord_info "chr1,120069334,120069406,-" ; protein_id "ENSP00000256646.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NOTCH2--GNG12^ENST00000256646.7" ; transcript_name "NOTCH2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NOTCH2--GNG12 HAVANA gene 58986 66700 . + . FI_gene_label "GNG12^ENSG00000172380.6" ; ID "NOTCH2--GNG12^GNG12^ENSG00000172380.6" ; ccdsid "CCDS30749.1" ; exon_id "ENSE00001454051.1" ; exon_number 3 ; gene_id "NOTCH2--GNG12^GNG12^ENSG00000172380.6" ; gene_name GNG12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000009545.3" ; havana_transcript "OTTHUMT00000026355.3" ; hgnc_id "HGNC:19663" ; level 2 ; orig_coord_info "chr1,67707594,67707686,-" ; protein_id "ENSP00000360021.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NOTCH2--GNG12^ENST00000370982.4" ; transcript_name "GNG12-201" ; transcript_support_level 1 ; transcript_type protein_coding
NOTCH2--GNG12 HAVANA mRNA 58986 66700 . + . FI_gene_label "GNG12^ENSG00000172380.6" ; ID "NOTCH2--GNG12^ENST00000370982.4" ; Parent "NOTCH2--GNG12^GNG12^ENSG00000172380.6" ; ccdsid "CCDS30749.1" ; exon_id "ENSE00001454051.1" ; exon_number 3 ; gene_id "NOTCH2--GNG12^GNG12^ENSG00000172380.6" ; gene_name GNG12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000009545.3" ; havana_transcript "OTTHUMT00000026355.3" ; hgnc_id "HGNC:19663" ; level 2 ; orig_coord_info "chr1,67707594,67707686,-" ; protein_id "ENSP00000360021.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NOTCH2--GNG12^ENST00000370982.4" ; transcript_name "GNG12-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
OGT--AC008397.1 HAVANA gene 1020 22777 . + . FI_gene_label "OGT^ENSG00000147162.14" ; ID "OGT--AC008397.1^OGT^ENSG00000147162.14" ; ccdsid "CCDS35502.1" ; exon_id "ENSE00001820280.1" ; exon_number 1 ; gene_id "OGT--AC008397.1^OGT^ENSG00000147162.14" ; gene_name OGT ; gene_type protein_coding ; havana_gene "OTTHUMG00000033316.7" ; havana_transcript "OTTHUMT00000081847.1" ; hgnc_id "HGNC:8127" ; level 2 ; orig_coord_info "chrX,71533300,71533336,+" ; protein_id "ENSP00000362805.3" ; tag basic appris_alternative_1 CCDS ; transcript_id "OGT--AC008397.1^ENST00000373701.7" ; transcript_name "OGT-201" ; transcript_support_level 1 ; transcript_type protein_coding
OGT--AC008397.1 HAVANA mRNA 1020 22777 . + . FI_gene_label "OGT^ENSG00000147162.14" ; ID "OGT--AC008397.1^ENST00000373701.7" ; Parent "OGT--AC008397.1^OGT^ENSG00000147162.14" ; ccdsid "CCDS35502.1" ; exon_id "ENSE00001820280.1" ; exon_number 1 ; gene_id "OGT--AC008397.1^OGT^ENSG00000147162.14" ; gene_name OGT ; gene_type protein_coding ; havana_gene "OTTHUMG00000033316.7" ; havana_transcript "OTTHUMT00000081847.1" ; hgnc_id "HGNC:8127" ; level 2 ; orig_coord_info "chrX,71533300,71533336,+" ; protein_id "ENSP00000362805.3" ; tag basic appris_alternative_1 CCDS ; transcript_id "OGT--AC008397.1^ENST00000373701.7" ; transcript_name "OGT-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
OGT--AC008397.1 HAVANA gene 27854 30895 . + . FI_gene_label "AC008397.1^ENSG00000284797.1" ; ID "OGT--AC008397.1^AC008397.1^ENSG00000284797.1" ; exon_id "ENSE00003823331.1" ; exon_number 1 ; gene_id "OGT--AC008397.1^AC008397.1^ENSG00000284797.1" ; gene_name "AC008397.1" ; gene_type protein_coding ; havana_gene "OTTHUMG00000192481.1" ; havana_transcript "OTTHUMT00000494532.1" ; level 2 ; orig_coord_info "chr19,18255220,18255307,-" ; protein_id "ENSP00000496487.1" ; tag RNA_Seq_supported_partial basic appris_principal_1 ; transcript_id "OGT--AC008397.1^ENST00000643046.1" ; transcript_name "AC008397.1-202" ; transcript_type protein_coding
OGT--AC008397.1 HAVANA mRNA 27854 30895 . + . FI_gene_label "AC008397.1^ENSG00000284797.1" ; ID "OGT--AC008397.1^ENST00000643046.1" ; Parent "OGT--AC008397.1^AC008397.1^ENSG00000284797.1" ; exon_id "ENSE00003823331.1" ; exon_number 1 ; gene_id "OGT--AC008397.1^AC008397.1^ENSG00000284797.1" ; gene_name "AC008397.1" ; gene_type protein_coding ; havana_gene "OTTHUMG00000192481.1" ; havana_transcript "OTTHUMT00000494532.1" ; level 2 ; orig_coord_info "chr19,18255220,18255307,-" ; protein_id "ENSP00000496487.1" ; tag RNA_Seq_supported_partial basic appris_principal_1 ; transcript_id "OGT--AC008397.1^ENST00000643046.1" ; transcript_name "AC008397.1-202" ; transcript_type protein_coding
L1 and L2 created:
OGT--IQCN HAVANA gene 1020 22777 . + . FI_gene_label "OGT^ENSG00000147162.14" ; ID "OGT--IQCN^OGT^ENSG00000147162.14" ; ccdsid "CCDS35502.1" ; exon_id "ENSE00001820280.1" ; exon_number 1 ; gene_id "OGT--IQCN^OGT^ENSG00000147162.14" ; gene_name OGT ; gene_type protein_coding ; havana_gene "OTTHUMG00000033316.7" ; havana_transcript "OTTHUMT00000081847.1" ; hgnc_id "HGNC:8127" ; level 2 ; orig_coord_info "chrX,71533300,71533336,+" ; protein_id "ENSP00000362805.3" ; tag basic appris_alternative_1 CCDS ; transcript_id "OGT--IQCN^ENST00000373701.7" ; transcript_name "OGT-201" ; transcript_support_level 1 ; transcript_type protein_coding
OGT--IQCN HAVANA mRNA 1020 22777 . + . FI_gene_label "OGT^ENSG00000147162.14" ; ID "OGT--IQCN^ENST00000373701.7" ; Parent "OGT--IQCN^OGT^ENSG00000147162.14" ; ccdsid "CCDS35502.1" ; exon_id "ENSE00001820280.1" ; exon_number 1 ; gene_id "OGT--IQCN^OGT^ENSG00000147162.14" ; gene_name OGT ; gene_type protein_coding ; havana_gene "OTTHUMG00000033316.7" ; havana_transcript "OTTHUMT00000081847.1" ; hgnc_id "HGNC:8127" ; level 2 ; orig_coord_info "chrX,71533300,71533336,+" ; protein_id "ENSP00000362805.3" ; tag basic appris_alternative_1 CCDS ; transcript_id "OGT--IQCN^ENST00000373701.7" ; transcript_name "OGT-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
OGT--IQCN HAVANA gene 27911 40212 . + . FI_gene_label "IQCN^ENSG00000130518.17" ; ID "OGT--IQCN^IQCN^ENSG00000130518.17" ; ccdsid "CCDS46017.1" ; exon_id "ENSE00003465558.1" ; exon_number 2 ; gene_id "OGT--IQCN^IQCN^ENSG00000130518.17" ; gene_name IQCN ; gene_type protein_coding ; havana_gene "OTTHUMG00000183354.11" ; havana_transcript "OTTHUMT00000466310.4" ; hgnc_id "HGNC:29350" ; level 2 ; orig_coord_info "chr19,18269466,18269478,-" ; protein_id "ENSP00000376213.2" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "OGT--IQCN^ENST00000392413.5" ; transcript_name "IQCN-201" ; transcript_support_level 1 ; transcript_type protein_coding
OGT--IQCN HAVANA mRNA 27911 40212 . + . FI_gene_label "IQCN^ENSG00000130518.17" ; ID "OGT--IQCN^ENST00000392413.5" ; Parent "OGT--IQCN^IQCN^ENSG00000130518.17" ; ccdsid "CCDS46017.1" ; exon_id "ENSE00003465558.1" ; exon_number 2 ; gene_id "OGT--IQCN^IQCN^ENSG00000130518.17" ; gene_name IQCN ; gene_type protein_coding ; havana_gene "OTTHUMG00000183354.11" ; havana_transcript "OTTHUMT00000466310.4" ; hgnc_id "HGNC:29350" ; level 2 ; orig_coord_info "chr19,18269466,18269478,-" ; protein_id "ENSP00000376213.2" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "OGT--IQCN^ENST00000392413.5" ; transcript_name "IQCN-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PAF1--PLEKHG2 HAVANA gene 11940 21864 . + . FI_gene_label "PLEKHG2^ENSG00000090924.15" ; ID "PAF1--PLEKHG2^PLEKHG2^ENSG00000090924.15" ; exon_id "ENSE00001796241.1" ; exon_number 1 ; gene_id "PAF1--PLEKHG2^PLEKHG2^ENSG00000090924.15" ; gene_name PLEKHG2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000152570.8" ; havana_transcript "OTTHUMT00000326804.2" ; hgnc_id "HGNC:29515" ; level 2 ; orig_coord_info "chr19,39415193,39415260,+" ; protein_id "ENSP00000205135.3" ; tag cds_start_NF mRNA_start_NF ; transcript_id "PAF1--PLEKHG2^ENST00000205135.8" ; transcript_name "PLEKHG2-201" ; transcript_support_level 1 ; transcript_type protein_coding
PAF1--PLEKHG2 HAVANA mRNA 11940 21864 . + . FI_gene_label "PLEKHG2^ENSG00000090924.15" ; ID "PAF1--PLEKHG2^ENST00000205135.8" ; Parent "PAF1--PLEKHG2^PLEKHG2^ENSG00000090924.15" ; exon_id "ENSE00001796241.1" ; exon_number 1 ; gene_id "PAF1--PLEKHG2^PLEKHG2^ENSG00000090924.15" ; gene_name PLEKHG2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000152570.8" ; havana_transcript "OTTHUMT00000326804.2" ; hgnc_id "HGNC:29515" ; level 2 ; orig_coord_info "chr19,39415193,39415260,+" ; protein_id "ENSP00000205135.3" ; tag cds_start_NF mRNA_start_NF ; transcript_id "PAF1--PLEKHG2^ENST00000205135.8" ; transcript_name "PLEKHG2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PAF1--PLEKHG2 HAVANA gene 1049 6415 . + . FI_gene_label "PAF1^ENSG00000006712.15" ; ID "PAF1--PLEKHG2^PAF1^ENSG00000006712.15" ; ccdsid "CCDS12533.1" ; exon_id "ENSE00003147051.2" ; exon_number 1 ; gene_id "PAF1--PLEKHG2^PAF1^ENSG00000006712.15" ; gene_name PAF1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000182968.3" ; havana_transcript "OTTHUMT00000464477.2" ; hgnc_id "HGNC:25459" ; level 2 ; orig_coord_info "chr19,39390818,39390864,-" ; protein_id "ENSP00000221265.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PAF1--PLEKHG2^ENST00000221265.8" ; transcript_name "PAF1-201" ; transcript_support_level 1 ; transcript_type protein_coding
PAF1--PLEKHG2 HAVANA mRNA 1049 6415 . + . FI_gene_label "PAF1^ENSG00000006712.15" ; ID "PAF1--PLEKHG2^ENST00000221265.8" ; Parent "PAF1--PLEKHG2^PAF1^ENSG00000006712.15" ; ccdsid "CCDS12533.1" ; exon_id "ENSE00003147051.2" ; exon_number 1 ; gene_id "PAF1--PLEKHG2^PAF1^ENSG00000006712.15" ; gene_name PAF1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000182968.3" ; havana_transcript "OTTHUMT00000464477.2" ; hgnc_id "HGNC:25459" ; level 2 ; orig_coord_info "chr19,39390818,39390864,-" ; protein_id "ENSP00000221265.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PAF1--PLEKHG2^ENST00000221265.8" ; transcript_name "PAF1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PLEKHA2--ADAM2 HAVANA gene 21378 43060 . + . FI_gene_label "ADAM2^ENSG00000104755.15" ; ID "PLEKHA2--ADAM2^ADAM2^ENSG00000104755.15" ; ccdsid "CCDS34884.1" ; exon_id "ENSE00002122139.1" ; exon_number 1 ; gene_id "PLEKHA2--ADAM2^ADAM2^ENSG00000104755.15" ; gene_name ADAM2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164041.4" ; havana_transcript "OTTHUMT00000376926.2" ; hgnc_id "HGNC:198" ; level 2 ; orig_coord_info "chr8,39838131,39838185,-" ; protein_id "ENSP00000265708.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PLEKHA2--ADAM2^ENST00000265708.9" ; transcript_name "ADAM2-201" ; transcript_support_level 1 ; transcript_type protein_coding
PLEKHA2--ADAM2 HAVANA mRNA 21378 43060 . + . FI_gene_label "ADAM2^ENSG00000104755.15" ; ID "PLEKHA2--ADAM2^ENST00000265708.9" ; Parent "PLEKHA2--ADAM2^ADAM2^ENSG00000104755.15" ; ccdsid "CCDS34884.1" ; exon_id "ENSE00002122139.1" ; exon_number 1 ; gene_id "PLEKHA2--ADAM2^ADAM2^ENSG00000104755.15" ; gene_name ADAM2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164041.4" ; havana_transcript "OTTHUMT00000376926.2" ; hgnc_id "HGNC:198" ; level 2 ; orig_coord_info "chr8,39838131,39838185,-" ; protein_id "ENSP00000265708.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PLEKHA2--ADAM2^ENST00000265708.9" ; transcript_name "ADAM2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PLEKHA2--ADAM2 HAVANA gene 1110 6203 . + . FI_gene_label "PLEKHA2^ENSG00000169499.15" ; ID "PLEKHA2--ADAM2^PLEKHA2^ENSG00000169499.15" ; exon_id "ENSE00003592062.1" ; exon_number 3 ; gene_id "PLEKHA2--ADAM2^PLEKHA2^ENSG00000169499.15" ; gene_name PLEKHA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164069.9" ; havana_transcript "OTTHUMT00000377071.1" ; hgnc_id "HGNC:14336" ; level 2 ; orig_coord_info "chr8,38917930,38918070,+" ; protein_id "ENSP00000429956.1" ; tag alternative_5_UTR dotter_confirmed mRNA_end_NF cds_end_NF ; transcript_id "PLEKHA2--ADAM2^ENST00000519640.5" ; transcript_name "PLEKHA2-203" ; transcript_support_level 5 ; transcript_type protein_coding
PLEKHA2--ADAM2 HAVANA mRNA 1110 6203 . + . FI_gene_label "PLEKHA2^ENSG00000169499.15" ; ID "PLEKHA2--ADAM2^ENST00000519640.5" ; Parent "PLEKHA2--ADAM2^PLEKHA2^ENSG00000169499.15" ; exon_id "ENSE00003592062.1" ; exon_number 3 ; gene_id "PLEKHA2--ADAM2^PLEKHA2^ENSG00000169499.15" ; gene_name PLEKHA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164069.9" ; havana_transcript "OTTHUMT00000377071.1" ; hgnc_id "HGNC:14336" ; level 2 ; orig_coord_info "chr8,38917930,38918070,+" ; protein_id "ENSP00000429956.1" ; tag alternative_5_UTR dotter_confirmed mRNA_end_NF cds_end_NF ; transcript_id "PLEKHA2--ADAM2^ENST00000519640.5" ; transcript_name "PLEKHA2-203" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
PRPF8--YWHAE HAVANA gene 27962 38021 . + . FI_gene_label "YWHAE^ENSG00000108953.17" ; ID "PRPF8--YWHAE^YWHAE^ENSG00000108953.17" ; ccdsid "CCDS11001.1" ; exon_id "ENSE00002683090.2" ; exon_number 1 ; gene_id "PRPF8--YWHAE^YWHAE^ENSG00000108953.17" ; gene_name YWHAE ; gene_type protein_coding ; havana_gene "OTTHUMG00000134316.7" ; havana_transcript "OTTHUMT00000259354.4" ; hgnc_id "HGNC:12851" ; level 2 ; orig_coord_info "chr17,1400047,1400110,-" ; protein_id "ENSP00000264335.8" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PRPF8--YWHAE^ENST00000264335.13" ; transcript_name "YWHAE-201" ; transcript_support_level 1 ; transcript_type protein_coding
PRPF8--YWHAE HAVANA mRNA 27962 38021 . + . FI_gene_label "YWHAE^ENSG00000108953.17" ; ID "PRPF8--YWHAE^ENST00000264335.13" ; Parent "PRPF8--YWHAE^YWHAE^ENSG00000108953.17" ; ccdsid "CCDS11001.1" ; exon_id "ENSE00002683090.2" ; exon_number 1 ; gene_id "PRPF8--YWHAE^YWHAE^ENSG00000108953.17" ; gene_name YWHAE ; gene_type protein_coding ; havana_gene "OTTHUMG00000134316.7" ; havana_transcript "OTTHUMT00000259354.4" ; hgnc_id "HGNC:12851" ; level 2 ; orig_coord_info "chr17,1400047,1400110,-" ; protein_id "ENSP00000264335.8" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PRPF8--YWHAE^ENST00000264335.13" ; transcript_name "YWHAE-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PRPF8--YWHAE HAVANA gene 1001 24961 . + . FI_gene_label "PRPF8^ENSG00000174231.17" ; ID "PRPF8--YWHAE^PRPF8^ENSG00000174231.17" ; ccdsid "CCDS11010.1" ; exon_id "ENSE00003537012.1" ; exon_number 2 ; gene_id "PRPF8--YWHAE^PRPF8^ENSG00000174231.17" ; gene_name PRPF8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000090553.7" ; havana_transcript "OTTHUMT00000207079.4" ; hgnc_id "HGNC:17340" ; level 2 ; orig_coord_info "chr17,1684472,1684571,-" ; protein_id "ENSP00000304350.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PRPF8--YWHAE^ENST00000304992.11" ; transcript_name "PRPF8-201" ; transcript_support_level 1 ; transcript_type protein_coding
PRPF8--YWHAE HAVANA mRNA 1001 24961 . + . FI_gene_label "PRPF8^ENSG00000174231.17" ; ID "PRPF8--YWHAE^ENST00000304992.11" ; Parent "PRPF8--YWHAE^PRPF8^ENSG00000174231.17" ; ccdsid "CCDS11010.1" ; exon_id "ENSE00003537012.1" ; exon_number 2 ; gene_id "PRPF8--YWHAE^PRPF8^ENSG00000174231.17" ; gene_name PRPF8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000090553.7" ; havana_transcript "OTTHUMT00000207079.4" ; hgnc_id "HGNC:17340" ; level 2 ; orig_coord_info "chr17,1684472,1684571,-" ; protein_id "ENSP00000304350.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PRPF8--YWHAE^ENST00000304992.11" ; transcript_name "PRPF8-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RBM4--PDPK1 HAVANA gene 16097 37780 . + . FI_gene_label "PDPK1^ENSG00000140992.19" ; ID "RBM4--PDPK1^PDPK1^ENSG00000140992.19" ; ccdsid "CCDS10473.1" ; exon_id "ENSE00001867541.1" ; exon_number 1 ; gene_id "RBM4--PDPK1^PDPK1^ENSG00000140992.19" ; gene_name PDPK1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000128874.8" ; havana_transcript "OTTHUMT00000250832.2" ; hgnc_id "HGNC:8816" ; level 2 ; orig_coord_info "chr16,2538113,2538136,+" ; protein_id "ENSP00000268673.7" ; tag basic CCDS ; transcript_id "RBM4--PDPK1^ENST00000268673.11" ; transcript_name "PDPK1-201" ; transcript_support_level 1 ; transcript_type protein_coding
RBM4--PDPK1 HAVANA mRNA 16097 37780 . + . FI_gene_label "PDPK1^ENSG00000140992.19" ; ID "RBM4--PDPK1^ENST00000268673.11" ; Parent "RBM4--PDPK1^PDPK1^ENSG00000140992.19" ; ccdsid "CCDS10473.1" ; exon_id "ENSE00001867541.1" ; exon_number 1 ; gene_id "RBM4--PDPK1^PDPK1^ENSG00000140992.19" ; gene_name PDPK1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000128874.8" ; havana_transcript "OTTHUMT00000250832.2" ; hgnc_id "HGNC:8816" ; level 2 ; orig_coord_info "chr16,2538113,2538136,+" ; protein_id "ENSP00000268673.7" ; tag basic CCDS ; transcript_id "RBM4--PDPK1^ENST00000268673.11" ; transcript_name "PDPK1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RBM4--PDPK1 HAVANA gene 1037 7262 . + . FI_gene_label "RBM4^ENSG00000173933.21" ; ID "RBM4--PDPK1^RBM4^ENSG00000173933.21" ; ccdsid "CCDS41676.1" ; exon_id "ENSE00003513724.1" ; exon_number 2 ; gene_id "RBM4--PDPK1^RBM4^ENSG00000173933.21" ; gene_name RBM4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000154171.7" ; havana_transcript "OTTHUMT00000334210.2" ; hgnc_id "HGNC:9901" ; level 2 ; orig_coord_info "chr11,66639712,66640123,+" ; protein_id "ENSP00000309166.8" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RBM4--PDPK1^ENST00000310092.12" ; transcript_name "RBM4-201" ; transcript_support_level 1 ; transcript_type protein_coding
RBM4--PDPK1 HAVANA mRNA 1037 7262 . + . FI_gene_label "RBM4^ENSG00000173933.21" ; ID "RBM4--PDPK1^ENST00000310092.12" ; Parent "RBM4--PDPK1^RBM4^ENSG00000173933.21" ; ccdsid "CCDS41676.1" ; exon_id "ENSE00003513724.1" ; exon_number 2 ; gene_id "RBM4--PDPK1^RBM4^ENSG00000173933.21" ; gene_name RBM4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000154171.7" ; havana_transcript "OTTHUMT00000334210.2" ; hgnc_id "HGNC:9901" ; level 2 ; orig_coord_info "chr11,66639712,66640123,+" ; protein_id "ENSP00000309166.8" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RBM4--PDPK1^ENST00000310092.12" ; transcript_name "RBM4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RBM4B--PDPK1 HAVANA gene 11576 33259 . + . FI_gene_label "PDPK1^ENSG00000140992.19" ; ID "RBM4B--PDPK1^PDPK1^ENSG00000140992.19" ; ccdsid "CCDS10473.1" ; exon_id "ENSE00001867541.1" ; exon_number 1 ; gene_id "RBM4B--PDPK1^PDPK1^ENSG00000140992.19" ; gene_name PDPK1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000128874.8" ; havana_transcript "OTTHUMT00000250832.2" ; hgnc_id "HGNC:8816" ; level 2 ; orig_coord_info "chr16,2538113,2538136,+" ; protein_id "ENSP00000268673.7" ; tag basic CCDS ; transcript_id "RBM4B--PDPK1^ENST00000268673.11" ; transcript_name "PDPK1-201" ; transcript_support_level 1 ; transcript_type protein_coding
RBM4B--PDPK1 HAVANA mRNA 11576 33259 . + . FI_gene_label "PDPK1^ENSG00000140992.19" ; ID "RBM4B--PDPK1^ENST00000268673.11" ; Parent "RBM4B--PDPK1^PDPK1^ENSG00000140992.19" ; ccdsid "CCDS10473.1" ; exon_id "ENSE00001867541.1" ; exon_number 1 ; gene_id "RBM4B--PDPK1^PDPK1^ENSG00000140992.19" ; gene_name PDPK1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000128874.8" ; havana_transcript "OTTHUMT00000250832.2" ; hgnc_id "HGNC:8816" ; level 2 ; orig_coord_info "chr16,2538113,2538136,+" ; protein_id "ENSP00000268673.7" ; tag basic CCDS ; transcript_id "RBM4B--PDPK1^ENST00000268673.11" ; transcript_name "PDPK1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RBM4B--PDPK1 HAVANA gene 1001 8551 . + . FI_gene_label "RBM4B^ENSG00000173914.12" ; ID "RBM4B--PDPK1^RBM4B^ENSG00000173914.12" ; ccdsid "CCDS8149.1" ; exon_id "ENSE00002463386.1" ; exon_number 2 ; gene_id "RBM4B--PDPK1^RBM4B^ENSG00000173914.12" ; gene_name RBM4B ; gene_type protein_coding ; havana_gene "OTTHUMG00000167243.4" ; havana_transcript "OTTHUMT00000393852.2" ; hgnc_id "HGNC:28842" ; level 2 ; orig_coord_info "chr11,66676668,66677079,-" ; protein_id "ENSP00000310471.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RBM4B--PDPK1^ENST00000310046.9" ; transcript_name "RBM4B-201" ; transcript_support_level 1 ; transcript_type protein_coding
RBM4B--PDPK1 HAVANA mRNA 1001 8551 . + . FI_gene_label "RBM4B^ENSG00000173914.12" ; ID "RBM4B--PDPK1^ENST00000310046.9" ; Parent "RBM4B--PDPK1^RBM4B^ENSG00000173914.12" ; ccdsid "CCDS8149.1" ; exon_id "ENSE00002463386.1" ; exon_number 2 ; gene_id "RBM4B--PDPK1^RBM4B^ENSG00000173914.12" ; gene_name RBM4B ; gene_type protein_coding ; havana_gene "OTTHUMG00000167243.4" ; havana_transcript "OTTHUMT00000393852.2" ; hgnc_id "HGNC:28842" ; level 2 ; orig_coord_info "chr11,66676668,66677079,-" ; protein_id "ENSP00000310471.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RBM4B--PDPK1^ENST00000310046.9" ; transcript_name "RBM4B-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RCOR1--TRAF3 HAVANA gene 1001 16099 . + . FI_gene_label "RCOR1^ENSG00000089902.10" ; ID "RCOR1--TRAF3^RCOR1^ENSG00000089902.10" ; ccdsid "CCDS9974.2" ; exon_id "ENSE00001420913.3" ; exon_number 1 ; gene_id "RCOR1--TRAF3^RCOR1^ENSG00000089902.10" ; gene_name RCOR1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000171778.5" ; havana_transcript "OTTHUMT00000415058.4" ; hgnc_id "HGNC:17441" ; level 2 ; orig_coord_info "chr14,102592887,102593187,+" ; protein_id "ENSP00000262241.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RCOR1--TRAF3^ENST00000262241.7" ; transcript_name "RCOR1-201" ; transcript_support_level 1 ; transcript_type protein_coding
RCOR1--TRAF3 HAVANA mRNA 1001 16099 . + . FI_gene_label "RCOR1^ENSG00000089902.10" ; ID "RCOR1--TRAF3^ENST00000262241.7" ; Parent "RCOR1--TRAF3^RCOR1^ENSG00000089902.10" ; ccdsid "CCDS9974.2" ; exon_id "ENSE00001420913.3" ; exon_number 1 ; gene_id "RCOR1--TRAF3^RCOR1^ENSG00000089902.10" ; gene_name RCOR1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000171778.5" ; havana_transcript "OTTHUMT00000415058.4" ; hgnc_id "HGNC:17441" ; level 2 ; orig_coord_info "chr14,102592887,102593187,+" ; protein_id "ENSP00000262241.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RCOR1--TRAF3^ENST00000262241.7" ; transcript_name "RCOR1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RCOR1--TRAF3 ENSEMBL gene 19130 41017 . + . FI_gene_label "TRAF3^ENSG00000131323.16" ; ID "RCOR1--TRAF3^TRAF3^ENSG00000131323.16" ; ccdsid "CCDS9976.1" ; exon_id "ENSE00001026101.6" ; exon_number 3 ; gene_id "RCOR1--TRAF3^TRAF3^ENSG00000131323.16" ; gene_name TRAF3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000171902.3" ; hgnc_id "HGNC:12033" ; level 3 ; orig_coord_info "chr14,102870202,102870446,+" ; protein_id "ENSP00000328003.4" ; tag basic CCDS ; transcript_id "RCOR1--TRAF3^ENST00000347662.8" ; transcript_name "TRAF3-201" ; transcript_support_level 5 ; transcript_type protein_coding
RCOR1--TRAF3 ENSEMBL mRNA 19130 41017 . + . FI_gene_label "TRAF3^ENSG00000131323.16" ; ID "RCOR1--TRAF3^ENST00000347662.8" ; Parent "RCOR1--TRAF3^TRAF3^ENSG00000131323.16" ; ccdsid "CCDS9976.1" ; exon_id "ENSE00001026101.6" ; exon_number 3 ; gene_id "RCOR1--TRAF3^TRAF3^ENSG00000131323.16" ; gene_name TRAF3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000171902.3" ; hgnc_id "HGNC:12033" ; level 3 ; orig_coord_info "chr14,102870202,102870446,+" ; protein_id "ENSP00000328003.4" ; tag basic CCDS ; transcript_id "RCOR1--TRAF3^ENST00000347662.8" ; transcript_name "TRAF3-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
RPS6KB1--RNU6-450P HAVANA gene 1076 21996 . + . FI_gene_label "RPS6KB1^ENSG00000108443.14" ; ID "RPS6KB1--RNU6-450P^RPS6KB1^ENSG00000108443.14" ; ccdsid "CCDS11621.1" ; exon_id "ENSE00001823154.2" ; exon_number 1 ; gene_id "RPS6KB1--RNU6-450P^RPS6KB1^ENSG00000108443.14" ; gene_name RPS6KB1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150642.5" ; havana_transcript "OTTHUMT00000319324.2" ; hgnc_id "HGNC:10436" ; level 2 ; orig_coord_info "chr17,59893185,59893325,+" ; protein_id "ENSP00000225577.4" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "RPS6KB1--RNU6-450P^ENST00000225577.9" ; transcript_name "RPS6KB1-201" ; transcript_support_level 1 ; transcript_type protein_coding
RPS6KB1--RNU6-450P HAVANA mRNA 1076 21996 . + . FI_gene_label "RPS6KB1^ENSG00000108443.14" ; ID "RPS6KB1--RNU6-450P^ENST00000225577.9" ; Parent "RPS6KB1--RNU6-450P^RPS6KB1^ENSG00000108443.14" ; ccdsid "CCDS11621.1" ; exon_id "ENSE00001823154.2" ; exon_number 1 ; gene_id "RPS6KB1--RNU6-450P^RPS6KB1^ENSG00000108443.14" ; gene_name RPS6KB1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150642.5" ; havana_transcript "OTTHUMT00000319324.2" ; hgnc_id "HGNC:10436" ; level 2 ; orig_coord_info "chr17,59893185,59893325,+" ; protein_id "ENSP00000225577.4" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "RPS6KB1--RNU6-450P^ENST00000225577.9" ; transcript_name "RPS6KB1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RPS6KB1--TUBD1 HAVANA gene 1076 21996 . + . FI_gene_label "RPS6KB1^ENSG00000108443.14" ; ID "RPS6KB1--TUBD1^RPS6KB1^ENSG00000108443.14" ; ccdsid "CCDS11621.1" ; exon_id "ENSE00001823154.2" ; exon_number 1 ; gene_id "RPS6KB1--TUBD1^RPS6KB1^ENSG00000108443.14" ; gene_name RPS6KB1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150642.5" ; havana_transcript "OTTHUMT00000319324.2" ; hgnc_id "HGNC:10436" ; level 2 ; orig_coord_info "chr17,59893185,59893325,+" ; protein_id "ENSP00000225577.4" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "RPS6KB1--TUBD1^ENST00000225577.9" ; transcript_name "RPS6KB1-201" ; transcript_support_level 1 ; transcript_type protein_coding
RPS6KB1--TUBD1 HAVANA mRNA 1076 21996 . + . FI_gene_label "RPS6KB1^ENSG00000108443.14" ; ID "RPS6KB1--TUBD1^ENST00000225577.9" ; Parent "RPS6KB1--TUBD1^RPS6KB1^ENSG00000108443.14" ; ccdsid "CCDS11621.1" ; exon_id "ENSE00001823154.2" ; exon_number 1 ; gene_id "RPS6KB1--TUBD1^RPS6KB1^ENSG00000108443.14" ; gene_name RPS6KB1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150642.5" ; havana_transcript "OTTHUMT00000319324.2" ; hgnc_id "HGNC:10436" ; level 2 ; orig_coord_info "chr17,59893185,59893325,+" ; protein_id "ENSP00000225577.4" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "RPS6KB1--TUBD1^ENST00000225577.9" ; transcript_name "RPS6KB1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RPS6KB1--TUBD1 HAVANA gene 24999 38111 . + . FI_gene_label "TUBD1^ENSG00000108423.15" ; ID "RPS6KB1--TUBD1^TUBD1^ENSG00000108423.15" ; ccdsid "CCDS11620.1" ; exon_id "ENSE00003469790.1" ; exon_number 2 ; gene_id "RPS6KB1--TUBD1^TUBD1^ENSG00000108423.15" ; gene_name TUBD1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179885.4" ; havana_transcript "OTTHUMT00000504178.2" ; hgnc_id "HGNC:16811" ; level 2 ; orig_coord_info "chr17,59890831,59891002,-" ; protein_id "ENSP00000320797.3" ; tag RNA_Seq_supported_only basic MANE_Select appris_principal_1 CCDS ; transcript_id "RPS6KB1--TUBD1^ENST00000325752.8" ; transcript_name "TUBD1-201" ; transcript_support_level 5 ; transcript_type protein_coding
RPS6KB1--TUBD1 HAVANA mRNA 24999 38111 . + . FI_gene_label "TUBD1^ENSG00000108423.15" ; ID "RPS6KB1--TUBD1^ENST00000325752.8" ; Parent "RPS6KB1--TUBD1^TUBD1^ENSG00000108423.15" ; ccdsid "CCDS11620.1" ; exon_id "ENSE00003469790.1" ; exon_number 2 ; gene_id "RPS6KB1--TUBD1^TUBD1^ENSG00000108423.15" ; gene_name TUBD1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179885.4" ; havana_transcript "OTTHUMT00000504178.2" ; hgnc_id "HGNC:16811" ; level 2 ; orig_coord_info "chr17,59890831,59891002,-" ; protein_id "ENSP00000320797.3" ; tag RNA_Seq_supported_only basic MANE_Select appris_principal_1 CCDS ; transcript_id "RPS6KB1--TUBD1^ENST00000325752.8" ; transcript_name "TUBD1-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
SH2D4A--AC100849.1 HAVANA gene 1001 14224 . + . FI_gene_label "SH2D4A^ENSG00000104611.12" ; ID "SH2D4A--AC100849.1^SH2D4A^ENSG00000104611.12" ; ccdsid "CCDS6009.1" ; exon_id "ENSE00001040651.3" ; exon_number 2 ; gene_id "SH2D4A--AC100849.1^SH2D4A^ENSG00000104611.12" ; gene_name SH2D4A ; gene_type protein_coding ; havana_gene "OTTHUMG00000097005.4" ; havana_transcript "OTTHUMT00000214094.2" ; hgnc_id "HGNC:26102" ; level 2 ; orig_coord_info "chr8,19319548,19319728,+" ; protein_id "ENSP00000265807.3" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "SH2D4A--AC100849.1^ENST00000265807.8" ; transcript_name "SH2D4A-201" ; transcript_support_level 2 ; transcript_type protein_coding
SH2D4A--AC100849.1 HAVANA mRNA 1001 14224 . + . FI_gene_label "SH2D4A^ENSG00000104611.12" ; ID "SH2D4A--AC100849.1^ENST00000265807.8" ; Parent "SH2D4A--AC100849.1^SH2D4A^ENSG00000104611.12" ; ccdsid "CCDS6009.1" ; exon_id "ENSE00001040651.3" ; exon_number 2 ; gene_id "SH2D4A--AC100849.1^SH2D4A^ENSG00000104611.12" ; gene_name SH2D4A ; gene_type protein_coding ; havana_gene "OTTHUMG00000097005.4" ; havana_transcript "OTTHUMT00000214094.2" ; hgnc_id "HGNC:26102" ; level 2 ; orig_coord_info "chr8,19319548,19319728,+" ; protein_id "ENSP00000265807.3" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "SH2D4A--AC100849.1^ENST00000265807.8" ; transcript_name "SH2D4A-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
SKIL--PRKCI HAVANA gene 1038 14980 . + . FI_gene_label "SKIL^ENSG00000136603.14" ; ID "SKIL--PRKCI^SKIL^ENSG00000136603.14" ; ccdsid "CCDS33890.1" ; exon_id "ENSE00001594946.1" ; exon_number 2 ; gene_id "SKIL--PRKCI^SKIL^ENSG00000136603.14" ; gene_name SKIL ; gene_type protein_coding ; havana_gene "OTTHUMG00000158831.7" ; havana_transcript "OTTHUMT00000352413.3" ; hgnc_id "HGNC:10897" ; level 2 ; orig_coord_info "chr3,170360332,170361429,+" ; protein_id "ENSP00000259119.4" ; tag alternative_5_UTR basic MANE_Select appris_principal_2 CCDS ; transcript_id "SKIL--PRKCI^ENST00000259119.9" ; transcript_name "SKIL-201" ; transcript_support_level 1 ; transcript_type protein_coding
SKIL--PRKCI HAVANA mRNA 1038 14980 . + . FI_gene_label "SKIL^ENSG00000136603.14" ; ID "SKIL--PRKCI^ENST00000259119.9" ; Parent "SKIL--PRKCI^SKIL^ENSG00000136603.14" ; ccdsid "CCDS33890.1" ; exon_id "ENSE00001594946.1" ; exon_number 2 ; gene_id "SKIL--PRKCI^SKIL^ENSG00000136603.14" ; gene_name SKIL ; gene_type protein_coding ; havana_gene "OTTHUMG00000158831.7" ; havana_transcript "OTTHUMT00000352413.3" ; hgnc_id "HGNC:10897" ; level 2 ; orig_coord_info "chr3,170360332,170361429,+" ; protein_id "ENSP00000259119.4" ; tag alternative_5_UTR basic MANE_Select appris_principal_2 CCDS ; transcript_id "SKIL--PRKCI^ENST00000259119.9" ; transcript_name "SKIL-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SKIL--PRKCI HAVANA gene 17981 39592 . + . FI_gene_label "PRKCI^ENSG00000163558.13" ; ID "SKIL--PRKCI^PRKCI^ENSG00000163558.13" ; ccdsid "CCDS3212.2" ; exon_id "ENSE00001214914.6" ; exon_number 1 ; gene_id "SKIL--PRKCI^PRKCI^ENSG00000163558.13" ; gene_name PRKCI ; gene_type protein_coding ; havana_gene "OTTHUMG00000150214.5" ; havana_transcript "OTTHUMT00000316866.4" ; hgnc_id "HGNC:9404" ; level 2 ; orig_coord_info "chr3,170222670,170222770,+" ; protein_id "ENSP00000295797.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SKIL--PRKCI^ENST00000295797.5" ; transcript_name "PRKCI-201" ; transcript_support_level 1 ; transcript_type protein_coding
SKIL--PRKCI HAVANA mRNA 17981 39592 . + . FI_gene_label "PRKCI^ENSG00000163558.13" ; ID "SKIL--PRKCI^ENST00000295797.5" ; Parent "SKIL--PRKCI^PRKCI^ENSG00000163558.13" ; ccdsid "CCDS3212.2" ; exon_id "ENSE00001214914.6" ; exon_number 1 ; gene_id "SKIL--PRKCI^PRKCI^ENSG00000163558.13" ; gene_name PRKCI ; gene_type protein_coding ; havana_gene "OTTHUMG00000150214.5" ; havana_transcript "OTTHUMT00000316866.4" ; hgnc_id "HGNC:9404" ; level 2 ; orig_coord_info "chr3,170222670,170222770,+" ; protein_id "ENSP00000295797.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SKIL--PRKCI^ENST00000295797.5" ; transcript_name "PRKCI-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SLC4A7--BSG HAVANA gene 2355 37268 . + . FI_gene_label "SLC4A7^ENSG00000033867.16" ; ID "SLC4A7--BSG^SLC4A7^ENSG00000033867.16" ; ccdsid "CCDS33721.1" ; exon_id "ENSE00002224745.1" ; exon_number 1 ; gene_id "SLC4A7--BSG^SLC4A7^ENSG00000033867.16" ; gene_name SLC4A7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000155679.15" ; havana_transcript "OTTHUMT00000341230.2" ; hgnc_id "HGNC:11033" ; level 2 ; orig_coord_info "chr3,27456651,27456683,-" ; protein_id "ENSP00000295736.5" ; tag basic CCDS ; transcript_id "SLC4A7--BSG^ENST00000295736.9" ; transcript_name "SLC4A7-201" ; transcript_support_level 1 ; transcript_type protein_coding
SLC4A7--BSG HAVANA mRNA 2355 37268 . + . FI_gene_label "SLC4A7^ENSG00000033867.16" ; ID "SLC4A7--BSG^ENST00000295736.9" ; Parent "SLC4A7--BSG^SLC4A7^ENSG00000033867.16" ; ccdsid "CCDS33721.1" ; exon_id "ENSE00002224745.1" ; exon_number 1 ; gene_id "SLC4A7--BSG^SLC4A7^ENSG00000033867.16" ; gene_name SLC4A7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000155679.15" ; havana_transcript "OTTHUMT00000341230.2" ; hgnc_id "HGNC:11033" ; level 2 ; orig_coord_info "chr3,27456651,27456683,-" ; protein_id "ENSP00000295736.5" ; tag basic CCDS ; transcript_id "SLC4A7--BSG^ENST00000295736.9" ; transcript_name "SLC4A7-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SLC4A7--BSG HAVANA gene 41590 49755 . + . FI_gene_label "BSG^ENSG00000172270.22" ; ID "SLC4A7--BSG^BSG^ENSG00000172270.22" ; ccdsid "CCDS12033.1" ; exon_id "ENSE00003817675.1" ; exon_number 1 ; gene_id "SLC4A7--BSG^BSG^ENSG00000172270.22" ; gene_name BSG ; gene_type protein_coding ; havana_gene "OTTHUMG00000177718.19" ; havana_transcript "OTTHUMT00000438630.6" ; hgnc_id "HGNC:1116" ; level 2 ; orig_coord_info "chr19,572635,572701,+" ; protein_id "ENSP00000333769.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SLC4A7--BSG^ENST00000333511.9" ; transcript_name "BSG-201" ; transcript_support_level 1 ; transcript_type protein_coding
SLC4A7--BSG HAVANA mRNA 41590 49755 . + . FI_gene_label "BSG^ENSG00000172270.22" ; ID "SLC4A7--BSG^ENST00000333511.9" ; Parent "SLC4A7--BSG^BSG^ENSG00000172270.22" ; ccdsid "CCDS12033.1" ; exon_id "ENSE00003817675.1" ; exon_number 1 ; gene_id "SLC4A7--BSG^BSG^ENSG00000172270.22" ; gene_name BSG ; gene_type protein_coding ; havana_gene "OTTHUMG00000177718.19" ; havana_transcript "OTTHUMT00000438630.6" ; hgnc_id "HGNC:1116" ; level 2 ; orig_coord_info "chr19,572635,572701,+" ; protein_id "ENSP00000333769.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SLC4A7--BSG^ENST00000333511.9" ; transcript_name "BSG-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SLC9A2--IL18RAP HAVANA gene 1001 20369 . + . FI_gene_label "SLC9A2^ENSG00000115616.3" ; ID "SLC9A2--IL18RAP^SLC9A2^ENSG00000115616.3" ; ccdsid "CCDS2062.1" ; exon_id "ENSE00000804374.3" ; exon_number 1 ; gene_id "SLC9A2--IL18RAP^SLC9A2^ENSG00000115616.3" ; gene_name SLC9A2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000130778.3" ; havana_transcript "OTTHUMT00000253292.3" ; hgnc_id "HGNC:11072" ; level 2 ; orig_coord_info "chr2,102619849,102620137,+" ; protein_id "ENSP00000233969.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SLC9A2--IL18RAP^ENST00000233969.3" ; transcript_name "SLC9A2-201" ; transcript_support_level 1 ; transcript_type protein_coding
SLC9A2--IL18RAP HAVANA mRNA 1001 20369 . + . FI_gene_label "SLC9A2^ENSG00000115616.3" ; ID "SLC9A2--IL18RAP^ENST00000233969.3" ; Parent "SLC9A2--IL18RAP^SLC9A2^ENSG00000115616.3" ; ccdsid "CCDS2062.1" ; exon_id "ENSE00000804374.3" ; exon_number 1 ; gene_id "SLC9A2--IL18RAP^SLC9A2^ENSG00000115616.3" ; gene_name SLC9A2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000130778.3" ; havana_transcript "OTTHUMT00000253292.3" ; hgnc_id "HGNC:11072" ; level 2 ; orig_coord_info "chr2,102619849,102620137,+" ; protein_id "ENSP00000233969.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SLC9A2--IL18RAP^ENST00000233969.3" ; transcript_name "SLC9A2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SLC9A2--IL18RAP HAVANA gene 23370 35086 . + . FI_gene_label "IL18RAP^ENSG00000115607.9" ; ID "SLC9A2--IL18RAP^IL18RAP^ENSG00000115607.9" ; ccdsid "CCDS2061.1" ; exon_id "ENSE00003609374.1" ; exon_number 3 ; gene_id "SLC9A2--IL18RAP^IL18RAP^ENSG00000115607.9" ; gene_name IL18RAP ; gene_type protein_coding ; havana_gene "OTTHUMG00000130777.3" ; havana_transcript "OTTHUMT00000253291.2" ; hgnc_id "HGNC:5989" ; level 2 ; orig_coord_info "chr2,102423278,102423347,+" ; protein_id "ENSP00000264260.2" ; tag basic appris_principal_1 CCDS ; transcript_id "SLC9A2--IL18RAP^ENST00000264260.6" ; transcript_name "IL18RAP-201" ; transcript_support_level 1 ; transcript_type protein_coding
SLC9A2--IL18RAP HAVANA mRNA 23370 35086 . + . FI_gene_label "IL18RAP^ENSG00000115607.9" ; ID "SLC9A2--IL18RAP^ENST00000264260.6" ; Parent "SLC9A2--IL18RAP^IL18RAP^ENSG00000115607.9" ; ccdsid "CCDS2061.1" ; exon_id "ENSE00003609374.1" ; exon_number 3 ; gene_id "SLC9A2--IL18RAP^IL18RAP^ENSG00000115607.9" ; gene_name IL18RAP ; gene_type protein_coding ; havana_gene "OTTHUMG00000130777.3" ; havana_transcript "OTTHUMT00000253291.2" ; hgnc_id "HGNC:5989" ; level 2 ; orig_coord_info "chr2,102423278,102423347,+" ; protein_id "ENSP00000264260.2" ; tag basic appris_principal_1 CCDS ; transcript_id "SLC9A2--IL18RAP^ENST00000264260.6" ; transcript_name "IL18RAP-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SPAG9--MBTD1 HAVANA gene 1001 43513 . + . FI_gene_label "SPAG9^ENSG00000008294.21" ; ID "SPAG9--MBTD1^SPAG9^ENSG00000008294.21" ; ccdsid "CCDS45740.1" ; exon_id "ENSE00003850676.1" ; exon_number 1 ; gene_id "SPAG9--MBTD1^SPAG9^ENSG00000008294.21" ; gene_name SPAG9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000162316.7" ; havana_transcript "OTTHUMT00000368543.3" ; hgnc_id "HGNC:14524" ; level 2 ; orig_coord_info "chr17,51120354,51120656,-" ; protein_id "ENSP00000262013.7" ; tag basic MANE_Select appris_alternative_1 CCDS ; transcript_id "SPAG9--MBTD1^ENST00000262013.12" ; transcript_name "SPAG9-201" ; transcript_support_level 1 ; transcript_type protein_coding
SPAG9--MBTD1 HAVANA mRNA 1001 43513 . + . FI_gene_label "SPAG9^ENSG00000008294.21" ; ID "SPAG9--MBTD1^ENST00000262013.12" ; Parent "SPAG9--MBTD1^SPAG9^ENSG00000008294.21" ; ccdsid "CCDS45740.1" ; exon_id "ENSE00003850676.1" ; exon_number 1 ; gene_id "SPAG9--MBTD1^SPAG9^ENSG00000008294.21" ; gene_name SPAG9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000162316.7" ; havana_transcript "OTTHUMT00000368543.3" ; hgnc_id "HGNC:14524" ; level 2 ; orig_coord_info "chr17,51120354,51120656,-" ; protein_id "ENSP00000262013.7" ; tag basic MANE_Select appris_alternative_1 CCDS ; transcript_id "SPAG9--MBTD1^ENST00000262013.12" ; transcript_name "SPAG9-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SPAG9--MBTD1 ENSEMBL gene 54633 62177 . + . FI_gene_label "MBTD1^ENSG00000011258.16" ; ID "SPAG9--MBTD1^MBTD1^ENSG00000011258.16" ; exon_id "ENSE00003743801.1" ; exon_number 2 ; gene_id "SPAG9--MBTD1^MBTD1^ENSG00000011258.16" ; gene_name MBTD1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150442.4" ; hgnc_id "HGNC:19866" ; level 3 ; orig_coord_info "chr17,51206888,51206999,-" ; protein_id "ENSP00000365561.3" ; tag basic ; transcript_id "SPAG9--MBTD1^ENST00000376381.3" ; transcript_name "MBTD1-201" ; transcript_support_level 1 ; transcript_type protein_coding
SPAG9--MBTD1 ENSEMBL mRNA 54633 62177 . + . FI_gene_label "MBTD1^ENSG00000011258.16" ; ID "SPAG9--MBTD1^ENST00000376381.3" ; Parent "SPAG9--MBTD1^MBTD1^ENSG00000011258.16" ; exon_id "ENSE00003743801.1" ; exon_number 2 ; gene_id "SPAG9--MBTD1^MBTD1^ENSG00000011258.16" ; gene_name MBTD1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150442.4" ; hgnc_id "HGNC:19866" ; level 3 ; orig_coord_info "chr17,51206888,51206999,-" ; protein_id "ENSP00000365561.3" ; tag basic ; transcript_id "SPAG9--MBTD1^ENST00000376381.3" ; transcript_name "MBTD1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
STON1--GTF2A1L HAVANA gene 15060 24138 . + . FI_gene_label "GTF2A1L^ENSG00000242441.8" ; ID "STON1--GTF2A1L^GTF2A1L^ENSG00000242441.8" ; ccdsid "CCDS46281.1" ; exon_id "ENSE00001939761.2" ; exon_number 1 ; gene_id "STON1--GTF2A1L^GTF2A1L^ENSG00000242441.8" ; gene_name GTF2A1L ; gene_type protein_coding ; havana_gene "OTTHUMG00000152038.17" ; havana_transcript "OTTHUMT00000323852.5" ; hgnc_id "HGNC:30727" ; level 2 ; orig_coord_info "chr2,48617875,48617895,+" ; protein_id "ENSP00000384597.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "STON1--GTF2A1L^ENST00000403751.8" ; transcript_name "GTF2A1L-201" ; transcript_support_level 1 ; transcript_type protein_coding
STON1--GTF2A1L HAVANA mRNA 15060 24138 . + . FI_gene_label "GTF2A1L^ENSG00000242441.8" ; ID "STON1--GTF2A1L^ENST00000403751.8" ; Parent "STON1--GTF2A1L^GTF2A1L^ENSG00000242441.8" ; ccdsid "CCDS46281.1" ; exon_id "ENSE00001939761.2" ; exon_number 1 ; gene_id "STON1--GTF2A1L^GTF2A1L^ENSG00000242441.8" ; gene_name GTF2A1L ; gene_type protein_coding ; havana_gene "OTTHUMG00000152038.17" ; havana_transcript "OTTHUMT00000323852.5" ; hgnc_id "HGNC:30727" ; level 2 ; orig_coord_info "chr2,48617875,48617895,+" ; protein_id "ENSP00000384597.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "STON1--GTF2A1L^ENST00000403751.8" ; transcript_name "GTF2A1L-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
STON1--GTF2A1L HAVANA gene 1772 12001 . + . FI_gene_label "STON1^ENSG00000243244.7" ; ID "STON1--GTF2A1L^STON1^ENSG00000243244.7" ; ccdsid "CCDS1841.1" ; exon_id "ENSE00003530448.1" ; exon_number 2 ; gene_id "STON1--GTF2A1L^STON1^ENSG00000243244.7" ; gene_name STON1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129169.7" ; havana_transcript "OTTHUMT00000325006.1" ; hgnc_id "HGNC:17003" ; level 2 ; orig_coord_info "chr2,48580634,48582563,+" ; protein_id "ENSP00000385273.1" ; tag alternative_5_UTR basic MANE_Select appris_principal_1 CCDS ; transcript_id "STON1--GTF2A1L^ENST00000404752.6" ; transcript_name "STON1-201" ; transcript_support_level 1 ; transcript_type protein_coding
STON1--GTF2A1L HAVANA mRNA 1772 12001 . + . FI_gene_label "STON1^ENSG00000243244.7" ; ID "STON1--GTF2A1L^ENST00000404752.6" ; Parent "STON1--GTF2A1L^STON1^ENSG00000243244.7" ; ccdsid "CCDS1841.1" ; exon_id "ENSE00003530448.1" ; exon_number 2 ; gene_id "STON1--GTF2A1L^STON1^ENSG00000243244.7" ; gene_name STON1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129169.7" ; havana_transcript "OTTHUMT00000325006.1" ; hgnc_id "HGNC:17003" ; level 2 ; orig_coord_info "chr2,48580634,48582563,+" ; protein_id "ENSP00000385273.1" ; tag alternative_5_UTR basic MANE_Select appris_principal_1 CCDS ; transcript_id "STON1--GTF2A1L^ENST00000404752.6" ; transcript_name "STON1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
THADA--AC012409.2 HAVANA gene 1001 56741 . + . FI_gene_label "THADA^ENSG00000115970.19" ; ID "THADA--AC012409.2^THADA^ENSG00000115970.19" ; exon_id "ENSE00003655012.1" ; exon_number 2 ; gene_id "THADA--AC012409.2^THADA^ENSG00000115970.19" ; gene_name THADA ; gene_type protein_coding ; havana_gene "OTTHUMG00000152398.10" ; havana_transcript "OTTHUMT00000326071.7" ; hgnc_id "HGNC:19217" ; level 2 ; orig_coord_info "chr2,43592317,43592392,-" ; protein_id "ENSP00000381647.1" ; transcript_id "THADA--AC012409.2^ENST00000398653.5" ; transcript_name "THADA-201" ; transcript_support_level 2 ; transcript_type nonsense_mediated_decay
THADA--AC012409.2 HAVANA mRNA 1001 56741 . + . FI_gene_label "THADA^ENSG00000115970.19" ; ID "THADA--AC012409.2^ENST00000398653.5" ; Parent "THADA--AC012409.2^THADA^ENSG00000115970.19" ; exon_id "ENSE00003655012.1" ; exon_number 2 ; gene_id "THADA--AC012409.2^THADA^ENSG00000115970.19" ; gene_name THADA ; gene_type protein_coding ; havana_gene "OTTHUMG00000152398.10" ; havana_transcript "OTTHUMT00000326071.7" ; hgnc_id "HGNC:19217" ; level 2 ; orig_coord_info "chr2,43592317,43592392,-" ; protein_id "ENSP00000381647.1" ; transcript_id "THADA--AC012409.2^ENST00000398653.5" ; transcript_name "THADA-201" ; transcript_support_level 2 ; transcript_type nonsense_mediated_decay
L1 and L2 created:
TLK2--FAM157A HAVANA gene 4784 35054 . + . FI_gene_label "TLK2^ENSG00000146872.18" ; ID "TLK2--FAM157A^TLK2^ENSG00000146872.18" ; ccdsid "CCDS62283.1" ; exon_id "ENSE00003568961.1" ; exon_number 2 ; gene_id "TLK2--FAM157A^TLK2^ENSG00000146872.18" ; gene_name TLK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179176.3" ; havana_transcript "OTTHUMT00000445140.1" ; hgnc_id "HGNC:11842" ; level 2 ; orig_coord_info "chr17,62481126,62481206,+" ; protein_id "ENSP00000316512.9" ; tag basic CCDS ; transcript_id "TLK2--FAM157A^ENST00000326270.13" ; transcript_name "TLK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
TLK2--FAM157A HAVANA mRNA 4784 35054 . + . FI_gene_label "TLK2^ENSG00000146872.18" ; ID "TLK2--FAM157A^ENST00000326270.13" ; Parent "TLK2--FAM157A^TLK2^ENSG00000146872.18" ; ccdsid "CCDS62283.1" ; exon_id "ENSE00003568961.1" ; exon_number 2 ; gene_id "TLK2--FAM157A^TLK2^ENSG00000146872.18" ; gene_name TLK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179176.3" ; havana_transcript "OTTHUMT00000445140.1" ; hgnc_id "HGNC:11842" ; level 2 ; orig_coord_info "chr17,62481126,62481206,+" ; protein_id "ENSP00000316512.9" ; tag basic CCDS ; transcript_id "TLK2--FAM157A^ENST00000326270.13" ; transcript_name "TLK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TMED10--CENPT HAVANA gene 1001 10663 . + . FI_gene_label "TMED10^ENSG00000170348.9" ; ID "TMED10--CENPT^TMED10^ENSG00000170348.9" ; ccdsid "CCDS9840.1" ; exon_id "ENSE00001129888.9" ; exon_number 1 ; gene_id "TMED10--CENPT^TMED10^ENSG00000170348.9" ; gene_name TMED10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000171771.3" ; havana_transcript "OTTHUMT00000415034.2" ; hgnc_id "HGNC:16998" ; level 2 ; orig_coord_info "chr14,75176355,75176579,-" ; protein_id "ENSP00000303145.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TMED10--CENPT^ENST00000303575.9" ; transcript_name "TMED10-201" ; transcript_support_level 1 ; transcript_type protein_coding
TMED10--CENPT HAVANA mRNA 1001 10663 . + . FI_gene_label "TMED10^ENSG00000170348.9" ; ID "TMED10--CENPT^ENST00000303575.9" ; Parent "TMED10--CENPT^TMED10^ENSG00000170348.9" ; ccdsid "CCDS9840.1" ; exon_id "ENSE00001129888.9" ; exon_number 1 ; gene_id "TMED10--CENPT^TMED10^ENSG00000170348.9" ; gene_name TMED10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000171771.3" ; havana_transcript "OTTHUMT00000415034.2" ; hgnc_id "HGNC:16998" ; level 2 ; orig_coord_info "chr14,75176355,75176579,-" ; protein_id "ENSP00000303145.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TMED10--CENPT^ENST00000303575.9" ; transcript_name "TMED10-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TMED10--CENPT ENSEMBL gene 18787 25760 . + . FI_gene_label "CENPT^ENSG00000102901.13" ; ID "TMED10--CENPT^CENPT^ENSG00000102901.13" ; ccdsid "CCDS42182.1" ; exon_id "ENSE00001691564.1" ; exon_number 2 ; gene_id "TMED10--CENPT^CENPT^ENSG00000102901.13" ; gene_name CENPT ; gene_type protein_coding ; havana_gene "OTTHUMG00000173071.4" ; hgnc_id "HGNC:25787" ; level 3 ; orig_coord_info "chr16,67833750,67833859,-" ; protein_id "ENSP00000400140.2" ; tag basic appris_principal_1 CCDS ; transcript_id "TMED10--CENPT^ENST00000440851.6" ; transcript_name "CENPT-202" ; transcript_support_level 5 ; transcript_type protein_coding
TMED10--CENPT ENSEMBL mRNA 18787 25760 . + . FI_gene_label "CENPT^ENSG00000102901.13" ; ID "TMED10--CENPT^ENST00000440851.6" ; Parent "TMED10--CENPT^CENPT^ENSG00000102901.13" ; ccdsid "CCDS42182.1" ; exon_id "ENSE00001691564.1" ; exon_number 2 ; gene_id "TMED10--CENPT^CENPT^ENSG00000102901.13" ; gene_name CENPT ; gene_type protein_coding ; havana_gene "OTTHUMG00000173071.4" ; hgnc_id "HGNC:25787" ; level 3 ; orig_coord_info "chr16,67833750,67833859,-" ; protein_id "ENSP00000400140.2" ; tag basic appris_principal_1 CCDS ; transcript_id "TMED10--CENPT^ENST00000440851.6" ; transcript_name "CENPT-202" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
TMED10--THAP11 HAVANA gene 1001 10663 . + . FI_gene_label "TMED10^ENSG00000170348.9" ; ID "TMED10--THAP11^TMED10^ENSG00000170348.9" ; ccdsid "CCDS9840.1" ; exon_id "ENSE00001129888.9" ; exon_number 1 ; gene_id "TMED10--THAP11^TMED10^ENSG00000170348.9" ; gene_name TMED10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000171771.3" ; havana_transcript "OTTHUMT00000415034.2" ; hgnc_id "HGNC:16998" ; level 2 ; orig_coord_info "chr14,75176355,75176579,-" ; protein_id "ENSP00000303145.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TMED10--THAP11^ENST00000303575.9" ; transcript_name "TMED10-201" ; transcript_support_level 1 ; transcript_type protein_coding
TMED10--THAP11 HAVANA mRNA 1001 10663 . + . FI_gene_label "TMED10^ENSG00000170348.9" ; ID "TMED10--THAP11^ENST00000303575.9" ; Parent "TMED10--THAP11^TMED10^ENSG00000170348.9" ; ccdsid "CCDS9840.1" ; exon_id "ENSE00001129888.9" ; exon_number 1 ; gene_id "TMED10--THAP11^TMED10^ENSG00000170348.9" ; gene_name TMED10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000171771.3" ; havana_transcript "OTTHUMT00000415034.2" ; hgnc_id "HGNC:16998" ; level 2 ; orig_coord_info "chr14,75176355,75176579,-" ; protein_id "ENSP00000303145.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TMED10--THAP11^ENST00000303575.9" ; transcript_name "TMED10-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TMED10--THAP11 HAVANA gene 13664 15539 . + . FI_gene_label "THAP11^ENSG00000168286.3" ; ID "TMED10--THAP11^THAP11^ENSG00000168286.3" ; ccdsid "CCDS10847.1" ; exon_id "ENSE00001173220.6" ; exon_number 1 ; gene_id "TMED10--THAP11^THAP11^ENSG00000168286.3" ; gene_name THAP11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000137546.2" ; havana_transcript "OTTHUMT00000268879.2" ; hgnc_id "HGNC:23194" ; level 2 ; orig_coord_info "chr16,67842555,67843496,+" ; protein_id "ENSP00000304689.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TMED10--THAP11^ENST00000303596.3" ; transcript_name "THAP11-201" ; transcript_support_level NA ; transcript_type protein_coding
TMED10--THAP11 HAVANA mRNA 13664 15539 . + . FI_gene_label "THAP11^ENSG00000168286.3" ; ID "TMED10--THAP11^ENST00000303596.3" ; Parent "TMED10--THAP11^THAP11^ENSG00000168286.3" ; ccdsid "CCDS10847.1" ; exon_id "ENSE00001173220.6" ; exon_number 1 ; gene_id "TMED10--THAP11^THAP11^ENSG00000168286.3" ; gene_name THAP11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000137546.2" ; havana_transcript "OTTHUMT00000268879.2" ; hgnc_id "HGNC:23194" ; level 2 ; orig_coord_info "chr16,67842555,67843496,+" ; protein_id "ENSP00000304689.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TMED10--THAP11^ENST00000303596.3" ; transcript_name "THAP11-201" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
TMEM163--CCNT2-AS1 HAVANA gene 1001 14804 . + . FI_gene_label "TMEM163^ENSG00000152128.13" ; ID "TMEM163--CCNT2-AS1^TMEM163^ENSG00000152128.13" ; ccdsid "CCDS2172.1" ; exon_id "ENSE00001132585.8" ; exon_number 1 ; gene_id "TMEM163--CCNT2-AS1^TMEM163^ENSG00000152128.13" ; gene_name TMEM163 ; gene_type protein_coding ; havana_gene "OTTHUMG00000131713.2" ; havana_transcript "OTTHUMT00000254631.2" ; hgnc_id "HGNC:25380" ; level 2 ; orig_coord_info "chr2,134718734,134718935,-" ; protein_id "ENSP00000281924.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TMEM163--CCNT2-AS1^ENST00000281924.6" ; transcript_name "TMEM163-201" ; transcript_support_level 1 ; transcript_type protein_coding
TMEM163--CCNT2-AS1 HAVANA mRNA 1001 14804 . + . FI_gene_label "TMEM163^ENSG00000152128.13" ; ID "TMEM163--CCNT2-AS1^ENST00000281924.6" ; Parent "TMEM163--CCNT2-AS1^TMEM163^ENSG00000152128.13" ; ccdsid "CCDS2172.1" ; exon_id "ENSE00001132585.8" ; exon_number 1 ; gene_id "TMEM163--CCNT2-AS1^TMEM163^ENSG00000152128.13" ; gene_name TMEM163 ; gene_type protein_coding ; havana_gene "OTTHUMG00000131713.2" ; havana_transcript "OTTHUMT00000254631.2" ; hgnc_id "HGNC:25380" ; level 2 ; orig_coord_info "chr2,134718734,134718935,-" ; protein_id "ENSP00000281924.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TMEM163--CCNT2-AS1^ENST00000281924.6" ; transcript_name "TMEM163-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TRA2B--C3orf70 HAVANA gene 12194 18325 . + . FI_gene_label "TRA2B^ENSG00000136527.18" ; ID "TRA2B--C3orf70^TRA2B^ENSG00000136527.18" ; exon_id "ENSE00001710162.1" ; exon_number 1 ; gene_id "TRA2B--C3orf70^TRA2B^ENSG00000136527.18" ; gene_name TRA2B ; gene_type protein_coding ; havana_gene "OTTHUMG00000156641.3" ; havana_transcript "OTTHUMT00000344997.1" ; hgnc_id "HGNC:10781" ; level 2 ; orig_coord_info "chr3,185923796,185923893,-" ; protein_id "ENSP00000259043.7" ; tag mRNA_start_NF cds_start_NF ; transcript_id "TRA2B--C3orf70^ENST00000259043.11" ; transcript_name "TRA2B-201" ; transcript_support_level 3 ; transcript_type protein_coding
TRA2B--C3orf70 HAVANA mRNA 12194 18325 . + . FI_gene_label "TRA2B^ENSG00000136527.18" ; ID "TRA2B--C3orf70^ENST00000259043.11" ; Parent "TRA2B--C3orf70^TRA2B^ENSG00000136527.18" ; exon_id "ENSE00001710162.1" ; exon_number 1 ; gene_id "TRA2B--C3orf70^TRA2B^ENSG00000136527.18" ; gene_name TRA2B ; gene_type protein_coding ; havana_gene "OTTHUMG00000156641.3" ; havana_transcript "OTTHUMT00000344997.1" ; hgnc_id "HGNC:10781" ; level 2 ; orig_coord_info "chr3,185923796,185923893,-" ; protein_id "ENSP00000259043.7" ; tag mRNA_start_NF cds_start_NF ; transcript_id "TRA2B--C3orf70^ENST00000259043.11" ; transcript_name "TRA2B-201" ; transcript_support_level 3 ; transcript_type protein_coding
L1 and L2 created:
TRA2B--C3orf70 HAVANA gene 23923 32081 . + . FI_gene_label "C3orf70^ENSG00000187068.3" ; ID "TRA2B--C3orf70^C3orf70^ENSG00000187068.3" ; ccdsid "CCDS33900.1" ; exon_id "ENSE00001334397.3" ; exon_number 1 ; gene_id "TRA2B--C3orf70^C3orf70^ENSG00000187068.3" ; gene_name C3orf70 ; gene_type protein_coding ; havana_gene "OTTHUMG00000156696.2" ; havana_transcript "OTTHUMT00000345323.2" ; hgnc_id "HGNC:33731" ; level 2 ; orig_coord_info "chr3,185152628,185152823,-" ; protein_id "ENSP00000334974.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TRA2B--C3orf70^ENST00000335012.3" ; transcript_name "C3orf70-201" ; transcript_support_level 1 ; transcript_type protein_coding
TRA2B--C3orf70 HAVANA mRNA 23923 32081 . + . FI_gene_label "C3orf70^ENSG00000187068.3" ; ID "TRA2B--C3orf70^ENST00000335012.3" ; Parent "TRA2B--C3orf70^C3orf70^ENSG00000187068.3" ; ccdsid "CCDS33900.1" ; exon_id "ENSE00001334397.3" ; exon_number 1 ; gene_id "TRA2B--C3orf70^C3orf70^ENSG00000187068.3" ; gene_name C3orf70 ; gene_type protein_coding ; havana_gene "OTTHUMG00000156696.2" ; havana_transcript "OTTHUMT00000345323.2" ; hgnc_id "HGNC:33731" ; level 2 ; orig_coord_info "chr3,185152628,185152823,-" ; protein_id "ENSP00000334974.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TRA2B--C3orf70^ENST00000335012.3" ; transcript_name "C3orf70-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TRA2B--VPS8 HAVANA gene 12194 18325 . + . FI_gene_label "TRA2B^ENSG00000136527.18" ; ID "TRA2B--VPS8^TRA2B^ENSG00000136527.18" ; exon_id "ENSE00001710162.1" ; exon_number 1 ; gene_id "TRA2B--VPS8^TRA2B^ENSG00000136527.18" ; gene_name TRA2B ; gene_type protein_coding ; havana_gene "OTTHUMG00000156641.3" ; havana_transcript "OTTHUMT00000344997.1" ; hgnc_id "HGNC:10781" ; level 2 ; orig_coord_info "chr3,185923796,185923893,-" ; protein_id "ENSP00000259043.7" ; tag mRNA_start_NF cds_start_NF ; transcript_id "TRA2B--VPS8^ENST00000259043.11" ; transcript_name "TRA2B-201" ; transcript_support_level 3 ; transcript_type protein_coding
TRA2B--VPS8 HAVANA mRNA 12194 18325 . + . FI_gene_label "TRA2B^ENSG00000136527.18" ; ID "TRA2B--VPS8^ENST00000259043.11" ; Parent "TRA2B--VPS8^TRA2B^ENSG00000136527.18" ; exon_id "ENSE00001710162.1" ; exon_number 1 ; gene_id "TRA2B--VPS8^TRA2B^ENSG00000136527.18" ; gene_name TRA2B ; gene_type protein_coding ; havana_gene "OTTHUMG00000156641.3" ; havana_transcript "OTTHUMT00000344997.1" ; hgnc_id "HGNC:10781" ; level 2 ; orig_coord_info "chr3,185923796,185923893,-" ; protein_id "ENSP00000259043.7" ; tag mRNA_start_NF cds_start_NF ; transcript_id "TRA2B--VPS8^ENST00000259043.11" ; transcript_name "TRA2B-201" ; transcript_support_level 3 ; transcript_type protein_coding
L1 and L2 created:
TRA2B--VPS8 HAVANA gene 23923 84707 . + . FI_gene_label "VPS8^ENSG00000156931.16" ; ID "TRA2B--VPS8^VPS8^ENSG00000156931.16" ; exon_id "ENSE00001491382.1" ; exon_number 2 ; gene_id "TRA2B--VPS8^VPS8^ENSG00000156931.16" ; gene_name VPS8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000156707.10" ; hgnc_id "HGNC:29122" ; level 2 ; orig_coord_info "chr3,184824633,184824785,+" ; protein_id "ENSP00000287546.4" ; tag basic appris_alternative_1 ; transcript_id "TRA2B--VPS8^ENST00000287546.8" ; transcript_name "VPS8-201" ; transcript_support_level 1 ; transcript_type protein_coding
TRA2B--VPS8 HAVANA mRNA 23923 84707 . + . FI_gene_label "VPS8^ENSG00000156931.16" ; ID "TRA2B--VPS8^ENST00000287546.8" ; Parent "TRA2B--VPS8^VPS8^ENSG00000156931.16" ; exon_id "ENSE00001491382.1" ; exon_number 2 ; gene_id "TRA2B--VPS8^VPS8^ENSG00000156931.16" ; gene_name VPS8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000156707.10" ; hgnc_id "HGNC:29122" ; level 2 ; orig_coord_info "chr3,184824633,184824785,+" ; protein_id "ENSP00000287546.4" ; tag basic appris_alternative_1 ; transcript_id "TRA2B--VPS8^ENST00000287546.8" ; transcript_name "VPS8-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TVP23C--CDRT4 HAVANA gene 1052 15760 . + . FI_gene_label "TVP23C^ENSG00000175106.17" ; ID "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; ccdsid "CCDS11170.1" ; exon_id "ENSE00001105678.2" ; exon_number 1 ; gene_id "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; gene_name TVP23C ; gene_type protein_coding ; havana_gene "OTTHUMG00000171461.10" ; havana_transcript "OTTHUMT00000130705.3" ; hgnc_id "HGNC:30453" ; level 2 ; orig_coord_info "chr17,15563437,15563448,-" ; protein_id "ENSP00000225576.3" ; tag basic CCDS ; transcript_id "TVP23C--CDRT4^ENST00000225576.7" ; transcript_name "TVP23C-201" ; transcript_support_level 1 ; transcript_type protein_coding
TVP23C--CDRT4 HAVANA mRNA 1052 15760 . + . FI_gene_label "TVP23C^ENSG00000175106.17" ; ID "TVP23C--CDRT4^ENST00000225576.7" ; Parent "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; ccdsid "CCDS11170.1" ; exon_id "ENSE00001105678.2" ; exon_number 1 ; gene_id "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; gene_name TVP23C ; gene_type protein_coding ; havana_gene "OTTHUMG00000171461.10" ; havana_transcript "OTTHUMT00000130705.3" ; hgnc_id "HGNC:30453" ; level 2 ; orig_coord_info "chr17,15563437,15563448,-" ; protein_id "ENSP00000225576.3" ; tag basic CCDS ; transcript_id "TVP23C--CDRT4^ENST00000225576.7" ; transcript_name "TVP23C-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TVP23C--CDRT4 HAVANA gene 19889 25887 . + . FI_gene_label "CDRT4^ENSG00000239704.11" ; ID "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; ccdsid "CCDS73995.1" ; exon_id "ENSE00003735347.1" ; exon_number 3 ; gene_id "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; gene_name CDRT4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059070.14" ; havana_transcript "OTTHUMT00000130383.9" ; hgnc_id "HGNC:14383" ; level 2 ; orig_coord_info "chr17,15440208,15440238,-" ; protein_id "ENSP00000482523.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TVP23C--CDRT4^ENST00000619038.5" ; transcript_name "CDRT4-204" ; transcript_support_level 1 ; transcript_type protein_coding
TVP23C--CDRT4 HAVANA mRNA 19889 25887 . + . FI_gene_label "CDRT4^ENSG00000239704.11" ; ID "TVP23C--CDRT4^ENST00000619038.5" ; Parent "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; ccdsid "CCDS73995.1" ; exon_id "ENSE00003735347.1" ; exon_number 3 ; gene_id "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; gene_name CDRT4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059070.14" ; havana_transcript "OTTHUMT00000130383.9" ; hgnc_id "HGNC:14383" ; level 2 ; orig_coord_info "chr17,15440208,15440238,-" ; protein_id "ENSP00000482523.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TVP23C--CDRT4^ENST00000619038.5" ; transcript_name "CDRT4-204" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
UNC13D--FBF1 HAVANA gene 1149 16132 . + . FI_gene_label "UNC13D^ENSG00000092929.12" ; ID "UNC13D--FBF1^UNC13D^ENSG00000092929.12" ; ccdsid "CCDS11730.1" ; exon_id "ENSE00001361625.4" ; exon_number 1 ; gene_id "UNC13D--FBF1^UNC13D^ENSG00000092929.12" ; gene_name UNC13D ; gene_type protein_coding ; havana_gene "OTTHUMG00000179895.3" ; havana_transcript "OTTHUMT00000448847.2" ; hgnc_id "HGNC:23147" ; level 2 ; orig_coord_info "chr17,75844221,75844337,-" ; protein_id "ENSP00000207549.3" ; tag CAGE_supported_TSS basic MANE_Select appris_principal_2 CCDS ; transcript_id "UNC13D--FBF1^ENST00000207549.9" ; transcript_name "UNC13D-201" ; transcript_support_level 1 ; transcript_type protein_coding
UNC13D--FBF1 HAVANA mRNA 1149 16132 . + . FI_gene_label "UNC13D^ENSG00000092929.12" ; ID "UNC13D--FBF1^ENST00000207549.9" ; Parent "UNC13D--FBF1^UNC13D^ENSG00000092929.12" ; ccdsid "CCDS11730.1" ; exon_id "ENSE00001361625.4" ; exon_number 1 ; gene_id "UNC13D--FBF1^UNC13D^ENSG00000092929.12" ; gene_name UNC13D ; gene_type protein_coding ; havana_gene "OTTHUMG00000179895.3" ; havana_transcript "OTTHUMT00000448847.2" ; hgnc_id "HGNC:23147" ; level 2 ; orig_coord_info "chr17,75844221,75844337,-" ; protein_id "ENSP00000207549.3" ; tag CAGE_supported_TSS basic MANE_Select appris_principal_2 CCDS ; transcript_id "UNC13D--FBF1^ENST00000207549.9" ; transcript_name "UNC13D-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
UNC13D--FBF1 HAVANA gene 25259 42381 . + . FI_gene_label "FBF1^ENSG00000188878.19" ; ID "UNC13D--FBF1^FBF1^ENSG00000188878.19" ; exon_id "ENSE00003792670.1" ; exon_number 1 ; gene_id "UNC13D--FBF1^FBF1^ENSG00000188878.19" ; gene_name FBF1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179919.7" ; havana_transcript "OTTHUMT00000488778.1" ; hgnc_id "HGNC:24674" ; level 2 ; orig_coord_info "chr17,75931229,75931289,-" ; protein_id "ENSP00000324292.7" ; tag mRNA_start_NF cds_start_NF not_organism_supported ; transcript_id "UNC13D--FBF1^ENST00000319129.10" ; transcript_name "FBF1-201" ; transcript_support_level 5 ; transcript_type protein_coding
UNC13D--FBF1 HAVANA mRNA 25259 42381 . + . FI_gene_label "FBF1^ENSG00000188878.19" ; ID "UNC13D--FBF1^ENST00000319129.10" ; Parent "UNC13D--FBF1^FBF1^ENSG00000188878.19" ; exon_id "ENSE00003792670.1" ; exon_number 1 ; gene_id "UNC13D--FBF1^FBF1^ENSG00000188878.19" ; gene_name FBF1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179919.7" ; havana_transcript "OTTHUMT00000488778.1" ; hgnc_id "HGNC:24674" ; level 2 ; orig_coord_info "chr17,75931229,75931289,-" ; protein_id "ENSP00000324292.7" ; tag mRNA_start_NF cds_start_NF not_organism_supported ; transcript_id "UNC13D--FBF1^ENST00000319129.10" ; transcript_name "FBF1-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
ZNF552--LGALS16 HAVANA gene 1001 5765 . + . FI_gene_label "ZNF552^ENSG00000178935.5" ; ID "ZNF552--LGALS16^ZNF552^ENSG00000178935.5" ; ccdsid "CCDS12963.1" ; exon_id "ENSE00003628553.1" ; exon_number 1 ; gene_id "ZNF552--LGALS16^ZNF552^ENSG00000178935.5" ; gene_name ZNF552 ; gene_type protein_coding ; havana_gene "OTTHUMG00000183478.1" ; havana_transcript "OTTHUMT00000466829.1" ; hgnc_id "HGNC:26135" ; level 2 ; orig_coord_info "chr19,57814711,57814743,-" ; protein_id "ENSP00000375582.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ZNF552--LGALS16^ENST00000391701.1" ; transcript_name "ZNF552-201" ; transcript_support_level 2 ; transcript_type protein_coding
ZNF552--LGALS16 HAVANA mRNA 1001 5765 . + . FI_gene_label "ZNF552^ENSG00000178935.5" ; ID "ZNF552--LGALS16^ENST00000391701.1" ; Parent "ZNF552--LGALS16^ZNF552^ENSG00000178935.5" ; ccdsid "CCDS12963.1" ; exon_id "ENSE00003628553.1" ; exon_number 1 ; gene_id "ZNF552--LGALS16^ZNF552^ENSG00000178935.5" ; gene_name ZNF552 ; gene_type protein_coding ; havana_gene "OTTHUMG00000183478.1" ; havana_transcript "OTTHUMT00000466829.1" ; hgnc_id "HGNC:26135" ; level 2 ; orig_coord_info "chr19,57814711,57814743,-" ; protein_id "ENSP00000375582.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ZNF552--LGALS16^ENST00000391701.1" ; transcript_name "ZNF552-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
ZNF552--LGALS16 HAVANA gene 9990 13149 . + . FI_gene_label "LGALS16^ENSG00000249861.4" ; ID "ZNF552--LGALS16^LGALS16^ENSG00000249861.4" ; ccdsid "CCDS54267.1" ; exon_id "ENSE00003187541.2" ; exon_number 1 ; gene_id "ZNF552--LGALS16^LGALS16^ENSG00000249861.4" ; gene_name LGALS16 ; gene_type protein_coding ; havana_gene "OTTHUMG00000183083.3" ; havana_transcript "OTTHUMT00000465022.3" ; hgnc_id "HGNC:40039" ; level 2 ; orig_coord_info "chr19,39655962,39655976,+" ; protein_id "ENSP00000375904.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ZNF552--LGALS16^ENST00000392051.4" ; transcript_name "LGALS16-201" ; transcript_support_level 1 ; transcript_type protein_coding
ZNF552--LGALS16 HAVANA mRNA 9990 13149 . + . FI_gene_label "LGALS16^ENSG00000249861.4" ; ID "ZNF552--LGALS16^ENST00000392051.4" ; Parent "ZNF552--LGALS16^LGALS16^ENSG00000249861.4" ; ccdsid "CCDS54267.1" ; exon_id "ENSE00003187541.2" ; exon_number 1 ; gene_id "ZNF552--LGALS16^LGALS16^ENSG00000249861.4" ; gene_name LGALS16 ; gene_type protein_coding ; havana_gene "OTTHUMG00000183083.3" ; havana_transcript "OTTHUMT00000465022.3" ; hgnc_id "HGNC:40039" ; level 2 ; orig_coord_info "chr19,39655962,39655976,+" ; protein_id "ENSP00000375904.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ZNF552--LGALS16^ENST00000392051.4" ; transcript_name "LGALS16-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ZNF552--RPS29P30 HAVANA gene 1001 5765 . + . FI_gene_label "ZNF552^ENSG00000178935.5" ; ID "ZNF552--RPS29P30^ZNF552^ENSG00000178935.5" ; ccdsid "CCDS12963.1" ; exon_id "ENSE00003628553.1" ; exon_number 1 ; gene_id "ZNF552--RPS29P30^ZNF552^ENSG00000178935.5" ; gene_name ZNF552 ; gene_type protein_coding ; havana_gene "OTTHUMG00000183478.1" ; havana_transcript "OTTHUMT00000466829.1" ; hgnc_id "HGNC:26135" ; level 2 ; orig_coord_info "chr19,57814711,57814743,-" ; protein_id "ENSP00000375582.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ZNF552--RPS29P30^ENST00000391701.1" ; transcript_name "ZNF552-201" ; transcript_support_level 2 ; transcript_type protein_coding
ZNF552--RPS29P30 HAVANA mRNA 1001 5765 . + . FI_gene_label "ZNF552^ENSG00000178935.5" ; ID "ZNF552--RPS29P30^ENST00000391701.1" ; Parent "ZNF552--RPS29P30^ZNF552^ENSG00000178935.5" ; ccdsid "CCDS12963.1" ; exon_id "ENSE00003628553.1" ; exon_number 1 ; gene_id "ZNF552--RPS29P30^ZNF552^ENSG00000178935.5" ; gene_name ZNF552 ; gene_type protein_coding ; havana_gene "OTTHUMG00000183478.1" ; havana_transcript "OTTHUMT00000466829.1" ; hgnc_id "HGNC:26135" ; level 2 ; orig_coord_info "chr19,57814711,57814743,-" ; protein_id "ENSP00000375582.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ZNF552--RPS29P30^ENST00000391701.1" ; transcript_name "ZNF552-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
ZNF587--ZSCAN5C HAVANA gene 1001 11353 . + . FI_gene_label "ZNF587^ENSG00000198466.12" ; ID "ZNF587--ZSCAN5C^ZNF587^ENSG00000198466.12" ; ccdsid "CCDS12964.1" ; exon_id "ENSE00003652091.2" ; exon_number 1 ; gene_id "ZNF587--ZSCAN5C^ZNF587^ENSG00000198466.12" ; gene_name ZNF587 ; gene_type protein_coding ; havana_gene "OTTHUMG00000154901.5" ; havana_transcript "OTTHUMT00000337594.3" ; hgnc_id "HGNC:30955" ; level 2 ; orig_coord_info "chr19,57850039,57850071,+" ; protein_id "ENSP00000345479.4" ; tag basic MANE_Select appris_alternative_2 CCDS ; transcript_id "ZNF587--ZSCAN5C^ENST00000339656.8" ; transcript_name "ZNF587-201" ; transcript_support_level 1 ; transcript_type protein_coding
ZNF587--ZSCAN5C HAVANA mRNA 1001 11353 . + . FI_gene_label "ZNF587^ENSG00000198466.12" ; ID "ZNF587--ZSCAN5C^ENST00000339656.8" ; Parent "ZNF587--ZSCAN5C^ZNF587^ENSG00000198466.12" ; ccdsid "CCDS12964.1" ; exon_id "ENSE00003652091.2" ; exon_number 1 ; gene_id "ZNF587--ZSCAN5C^ZNF587^ENSG00000198466.12" ; gene_name ZNF587 ; gene_type protein_coding ; havana_gene "OTTHUMG00000154901.5" ; havana_transcript "OTTHUMT00000337594.3" ; hgnc_id "HGNC:30955" ; level 2 ; orig_coord_info "chr19,57850039,57850071,+" ; protein_id "ENSP00000345479.4" ; tag basic MANE_Select appris_alternative_2 CCDS ; transcript_id "ZNF587--ZSCAN5C^ENST00000339656.8" ; transcript_name "ZNF587-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ZNF587--ZSCAN5C HAVANA gene 14354 18817 . + . FI_gene_label "ZSCAN5C^ENSG00000204532.8" ; ID "ZNF587--ZSCAN5C^ZSCAN5C^ENSG00000204532.8" ; ccdsid "CCDS86811.1" ; exon_id "ENSE00002495044.1" ; exon_number 2 ; gene_id "ZNF587--ZSCAN5C^ZSCAN5C^ENSG00000204532.8" ; gene_name ZSCAN5C ; gene_type protein_coding ; havana_gene "OTTHUMG00000167475.1" ; havana_transcript "OTTHUMT00000394739.1" ; hgnc_id "HGNC:34294" ; level 2 ; orig_coord_info "chr19,56205914,56206297,+" ; protein_id "ENSP00000435234.1" ; tag not_best_in_genome_evidence basic appris_principal_1 CCDS ; transcript_id "ZNF587--ZSCAN5C^ENST00000534327.6" ; transcript_name "ZSCAN5C-201" ; transcript_support_level 5 ; transcript_type protein_coding
ZNF587--ZSCAN5C HAVANA mRNA 14354 18817 . + . FI_gene_label "ZSCAN5C^ENSG00000204532.8" ; ID "ZNF587--ZSCAN5C^ENST00000534327.6" ; Parent "ZNF587--ZSCAN5C^ZSCAN5C^ENSG00000204532.8" ; ccdsid "CCDS86811.1" ; exon_id "ENSE00002495044.1" ; exon_number 2 ; gene_id "ZNF587--ZSCAN5C^ZSCAN5C^ENSG00000204532.8" ; gene_name ZSCAN5C ; gene_type protein_coding ; havana_gene "OTTHUMG00000167475.1" ; havana_transcript "OTTHUMT00000394739.1" ; hgnc_id "HGNC:34294" ; level 2 ; orig_coord_info "chr19,56205914,56206297,+" ; protein_id "ENSP00000435234.1" ; tag not_best_in_genome_evidence basic appris_principal_1 CCDS ; transcript_id "ZNF587--ZSCAN5C^ENST00000534327.6" ; transcript_name "ZSCAN5C-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
AHCY--AL356299.1 HAVANA gene 16214 16328 . + . FI_gene_label "AL356299.1^ENSG00000234087.1" ; ID "AHCY--AL356299.1^AL356299.1^ENSG00000234087.1" ; exon_id "ENSE00001626261.1" ; exon_number 1 ; gene_id "AHCY--AL356299.1^AL356299.1^ENSG00000234087.1" ; gene_name "AL356299.1" ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000032295.1" ; havana_transcript "OTTHUMT00000078777.1" ; level 2 ; ont "PGO:0000004" ; orig_coord_info "chr20,34347671,34347785,-" ; tag basic ; transcript_id "AHCY--AL356299.1^ENST00000437424.1" ; transcript_name "AL356299.1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
AHCY--AL356299.1 HAVANA RNA 16214 16328 . + . FI_gene_label "AL356299.1^ENSG00000234087.1" ; ID "AHCY--AL356299.1^ENST00000437424.1" ; Parent "AHCY--AL356299.1^AL356299.1^ENSG00000234087.1" ; exon_id "ENSE00001626261.1" ; exon_number 1 ; gene_id "AHCY--AL356299.1^AL356299.1^ENSG00000234087.1" ; gene_name "AL356299.1" ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000032295.1" ; havana_transcript "OTTHUMT00000078777.1" ; level 2 ; ont "PGO:0000004" ; orig_coord_info "chr20,34347671,34347785,-" ; tag basic ; transcript_id "AHCY--AL356299.1^ENST00000437424.1" ; transcript_name "AL356299.1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
AVL9--DPY19L1P2 HAVANA gene 33636 42282 . + . FI_gene_label "DPY19L1P2^ENSG00000231952.3" ; ID "AVL9--DPY19L1P2^DPY19L1P2^ENSG00000231952.3" ; exon_id "ENSE00001642650.1" ; exon_number 1 ; gene_id "AVL9--DPY19L1P2^DPY19L1P2^ENSG00000231952.3" ; gene_name DPY19L1P2 ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000152927.2" ; havana_transcript "OTTHUMT00000328639.2" ; hgnc_id "HGNC:22851" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr7,32812757,32812858,+" ; tag basic ; transcript_id "AVL9--DPY19L1P2^ENST00000426647.2" ; transcript_name "DPY19L1P2-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
AVL9--DPY19L1P2 HAVANA RNA 33636 42282 . + . FI_gene_label "DPY19L1P2^ENSG00000231952.3" ; ID "AVL9--DPY19L1P2^ENST00000426647.2" ; Parent "AVL9--DPY19L1P2^DPY19L1P2^ENSG00000231952.3" ; exon_id "ENSE00001642650.1" ; exon_number 1 ; gene_id "AVL9--DPY19L1P2^DPY19L1P2^ENSG00000231952.3" ; gene_name DPY19L1P2 ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000152927.2" ; havana_transcript "OTTHUMT00000328639.2" ; hgnc_id "HGNC:22851" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr7,32812757,32812858,+" ; tag basic ; transcript_id "AVL9--DPY19L1P2^ENST00000426647.2" ; transcript_name "DPY19L1P2-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
L1 and L2 created:
BPTF--LINC00674 HAVANA gene 48135 50347 . + . FI_gene_label "LINC00674^ENSG00000237854.3" ; ID "BPTF--LINC00674^LINC00674^ENSG00000237854.3" ; exon_id "ENSE00001751905.1" ; exon_number 1 ; gene_id "BPTF--LINC00674^LINC00674^ENSG00000237854.3" ; gene_name LINC00674 ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000132303.3" ; havana_transcript "OTTHUMT00000255408.1" ; hgnc_id "HGNC:44355" ; level 2 ; orig_coord_info "chr17,68102943,68103058,+" ; tag basic ; transcript_id "BPTF--LINC00674^ENST00000435469.2" ; transcript_name "LINC00674-201" ; transcript_support_level 3 ; transcript_type processed_transcript
BPTF--LINC00674 HAVANA RNA 48135 50347 . + . FI_gene_label "LINC00674^ENSG00000237854.3" ; ID "BPTF--LINC00674^ENST00000435469.2" ; Parent "BPTF--LINC00674^LINC00674^ENSG00000237854.3" ; exon_id "ENSE00001751905.1" ; exon_number 1 ; gene_id "BPTF--LINC00674^LINC00674^ENSG00000237854.3" ; gene_name LINC00674 ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000132303.3" ; havana_transcript "OTTHUMT00000255408.1" ; hgnc_id "HGNC:44355" ; level 2 ; orig_coord_info "chr17,68102943,68103058,+" ; tag basic ; transcript_id "BPTF--LINC00674^ENST00000435469.2" ; transcript_name "LINC00674-201" ; transcript_support_level 3 ; transcript_type processed_transcript
L1 and L2 created:
CPNE3--AC060765.2 HAVANA gene 37446 41838 . + . FI_gene_label "AC060765.2^ENSG00000254394.2" ; ID "CPNE3--AC060765.2^AC060765.2^ENSG00000254394.2" ; exon_id "ENSE00002100603.1" ; exon_number 1 ; gene_id "CPNE3--AC060765.2^AC060765.2^ENSG00000254394.2" ; gene_name "AC060765.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000164605.2" ; havana_transcript "OTTHUMT00000379375.1" ; level 2 ; orig_coord_info "chr8,82912104,82912378,+" ; tag basic ; transcript_id "CPNE3--AC060765.2^ENST00000524359.1" ; transcript_name "AC060765.2-201" ; transcript_support_level 3 ; transcript_type lncRNA
CPNE3--AC060765.2 HAVANA RNA 37446 41838 . + . FI_gene_label "AC060765.2^ENSG00000254394.2" ; ID "CPNE3--AC060765.2^ENST00000524359.1" ; Parent "CPNE3--AC060765.2^AC060765.2^ENSG00000254394.2" ; exon_id "ENSE00002100603.1" ; exon_number 1 ; gene_id "CPNE3--AC060765.2^AC060765.2^ENSG00000254394.2" ; gene_name "AC060765.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000164605.2" ; havana_transcript "OTTHUMT00000379375.1" ; level 2 ; orig_coord_info "chr8,82912104,82912378,+" ; tag basic ; transcript_id "CPNE3--AC060765.2^ENST00000524359.1" ; transcript_name "AC060765.2-201" ; transcript_support_level 3 ; transcript_type lncRNA
L1 and L2 created:
DIAPH3--RIOK3P1 HAVANA gene 39403 40930 . + . FI_gene_label "RIOK3P1^ENSG00000225944.1" ; ID "DIAPH3--RIOK3P1^RIOK3P1^ENSG00000225944.1" ; exon_id "ENSE00001642712.1" ; exon_number 1 ; gene_id "DIAPH3--RIOK3P1^RIOK3P1^ENSG00000225944.1" ; gene_name RIOK3P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000017083.1" ; havana_transcript "OTTHUMT00000045278.1" ; hgnc_id "HGNC:39714" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr13,74828553,74830080,+" ; tag pseudo_consens basic ; transcript_id "DIAPH3--RIOK3P1^ENST00000418778.1" ; transcript_name "RIOK3P1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
DIAPH3--RIOK3P1 HAVANA RNA 39403 40930 . + . FI_gene_label "RIOK3P1^ENSG00000225944.1" ; ID "DIAPH3--RIOK3P1^ENST00000418778.1" ; Parent "DIAPH3--RIOK3P1^RIOK3P1^ENSG00000225944.1" ; exon_id "ENSE00001642712.1" ; exon_number 1 ; gene_id "DIAPH3--RIOK3P1^RIOK3P1^ENSG00000225944.1" ; gene_name RIOK3P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000017083.1" ; havana_transcript "OTTHUMT00000045278.1" ; hgnc_id "HGNC:39714" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr13,74828553,74830080,+" ; tag pseudo_consens basic ; transcript_id "DIAPH3--RIOK3P1^ENST00000418778.1" ; transcript_name "RIOK3P1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
DIAPH3--RNU6-38P ENSEMBL gene 39403 39509 . + . FI_gene_label "RNU6-38P^ENSG00000206812.1" ; ID "DIAPH3--RNU6-38P^RNU6-38P^ENSG00000206812.1" ; exon_id "ENSE00001807871.1" ; exon_number 1 ; gene_id "DIAPH3--RNU6-38P^RNU6-38P^ENSG00000206812.1" ; gene_name "RNU6-38P" ; gene_type snRNA ; hgnc_id "HGNC:34282" ; level 3 ; orig_coord_info "chr13,75109587,75109693,+" ; tag basic ; transcript_id "DIAPH3--RNU6-38P^ENST00000384085.1" ; transcript_name "RNU6-38P-201" ; transcript_support_level NA ; transcript_type snRNA
DIAPH3--RNU6-38P ENSEMBL RNA 39403 39509 . + . FI_gene_label "RNU6-38P^ENSG00000206812.1" ; ID "DIAPH3--RNU6-38P^ENST00000384085.1" ; Parent "DIAPH3--RNU6-38P^RNU6-38P^ENSG00000206812.1" ; exon_id "ENSE00001807871.1" ; exon_number 1 ; gene_id "DIAPH3--RNU6-38P^RNU6-38P^ENSG00000206812.1" ; gene_name "RNU6-38P" ; gene_type snRNA ; hgnc_id "HGNC:34282" ; level 3 ; orig_coord_info "chr13,75109587,75109693,+" ; tag basic ; transcript_id "DIAPH3--RNU6-38P^ENST00000384085.1" ; transcript_name "RNU6-38P-201" ; transcript_support_level NA ; transcript_type snRNA
L1 and L2 created:
LINC02408--GRIP1 HAVANA gene 4698 9871 . + . FI_gene_label "LINC02408^ENSG00000203585.4" ; ID "LINC02408--GRIP1^LINC02408^ENSG00000203585.4" ; exon_id "ENSE00002266006.1" ; exon_number 1 ; gene_id "LINC02408--GRIP1^LINC02408^ENSG00000203585.4" ; gene_name LINC02408 ; gene_type lncRNA ; havana_gene "OTTHUMG00000169069.2" ; havana_transcript "OTTHUMT00000402126.1" ; hgnc_id "HGNC:53337" ; level 2 ; orig_coord_info "chr12,67520082,67520192,+" ; tag basic ; transcript_id "LINC02408--GRIP1^ENST00000400306.2" ; transcript_name "LINC02408-201" ; transcript_support_level 2 ; transcript_type lncRNA
LINC02408--GRIP1 HAVANA RNA 4698 9871 . + . FI_gene_label "LINC02408^ENSG00000203585.4" ; ID "LINC02408--GRIP1^ENST00000400306.2" ; Parent "LINC02408--GRIP1^LINC02408^ENSG00000203585.4" ; exon_id "ENSE00002266006.1" ; exon_number 1 ; gene_id "LINC02408--GRIP1^LINC02408^ENSG00000203585.4" ; gene_name LINC02408 ; gene_type lncRNA ; havana_gene "OTTHUMG00000169069.2" ; havana_transcript "OTTHUMT00000402126.1" ; hgnc_id "HGNC:53337" ; level 2 ; orig_coord_info "chr12,67520082,67520192,+" ; tag basic ; transcript_id "LINC02408--GRIP1^ENST00000400306.2" ; transcript_name "LINC02408-201" ; transcript_support_level 2 ; transcript_type lncRNA
L1 and L2 created:
MIA2--AL049828.1 HAVANA gene 81623 93438 . + . FI_gene_label "AL049828.1^ENSG00000258526.7" ; ID "MIA2--AL049828.1^AL049828.1^ENSG00000258526.7" ; exon_id "ENSE00003844890.1" ; exon_number 1 ; gene_id "MIA2--AL049828.1^AL049828.1^ENSG00000258526.7" ; gene_name "AL049828.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000170672.15" ; havana_transcript "OTTHUMT00000409989.2" ; level 2 ; orig_coord_info "chr14,40216527,40216586,+" ; tag basic ; transcript_id "MIA2--AL049828.1^ENST00000553464.2" ; transcript_name "AL049828.1-208" ; transcript_support_level 5 ; transcript_type lncRNA
MIA2--AL049828.1 HAVANA RNA 81623 93438 . + . FI_gene_label "AL049828.1^ENSG00000258526.7" ; ID "MIA2--AL049828.1^ENST00000553464.2" ; Parent "MIA2--AL049828.1^AL049828.1^ENSG00000258526.7" ; exon_id "ENSE00003844890.1" ; exon_number 1 ; gene_id "MIA2--AL049828.1^AL049828.1^ENSG00000258526.7" ; gene_name "AL049828.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000170672.15" ; havana_transcript "OTTHUMT00000409989.2" ; level 2 ; orig_coord_info "chr14,40216527,40216586,+" ; tag basic ; transcript_id "MIA2--AL049828.1^ENST00000553464.2" ; transcript_name "AL049828.1-208" ; transcript_support_level 5 ; transcript_type lncRNA
L1 and L2 created:
RPS6KB1--RNU6-450P ENSEMBL gene 24997 25103 . + . FI_gene_label "RNU6-450P^ENSG00000201524.1" ; ID "RPS6KB1--RNU6-450P^RNU6-450P^ENSG00000201524.1" ; exon_id "ENSE00001439417.1" ; exon_number 1 ; gene_id "RPS6KB1--RNU6-450P^RNU6-450P^ENSG00000201524.1" ; gene_name "RNU6-450P" ; gene_type snRNA ; hgnc_id "HGNC:47413" ; level 3 ; orig_coord_info "chr17,59847438,59847544,-" ; tag basic ; transcript_id "RPS6KB1--RNU6-450P^ENST00000364654.1" ; transcript_name "RNU6-450P-201" ; transcript_support_level NA ; transcript_type snRNA
RPS6KB1--RNU6-450P ENSEMBL RNA 24997 25103 . + . FI_gene_label "RNU6-450P^ENSG00000201524.1" ; ID "RPS6KB1--RNU6-450P^ENST00000364654.1" ; Parent "RPS6KB1--RNU6-450P^RNU6-450P^ENSG00000201524.1" ; exon_id "ENSE00001439417.1" ; exon_number 1 ; gene_id "RPS6KB1--RNU6-450P^RNU6-450P^ENSG00000201524.1" ; gene_name "RNU6-450P" ; gene_type snRNA ; hgnc_id "HGNC:47413" ; level 3 ; orig_coord_info "chr17,59847438,59847544,-" ; tag basic ; transcript_id "RPS6KB1--RNU6-450P^ENST00000364654.1" ; transcript_name "RNU6-450P-201" ; transcript_support_level NA ; transcript_type snRNA
L1 and L2 created:
SH2D4A--AC100849.1 HAVANA gene 19506 25441 . + . FI_gene_label "AC100849.1^ENSG00000253557.6" ; ID "SH2D4A--AC100849.1^AC100849.1^ENSG00000253557.6" ; exon_id "ENSE00002121183.1" ; exon_number 1 ; gene_id "SH2D4A--AC100849.1^AC100849.1^ENSG00000253557.6" ; gene_name "AC100849.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000163715.3" ; havana_transcript "OTTHUMT00000374890.1" ; level 2 ; orig_coord_info "chr8,19245148,19245489,-" ; tag basic ; transcript_id "SH2D4A--AC100849.1^ENST00000517949.5" ; transcript_name "AC100849.1-202" ; transcript_support_level 3 ; transcript_type lncRNA
SH2D4A--AC100849.1 HAVANA RNA 19506 25441 . + . FI_gene_label "AC100849.1^ENSG00000253557.6" ; ID "SH2D4A--AC100849.1^ENST00000517949.5" ; Parent "SH2D4A--AC100849.1^AC100849.1^ENSG00000253557.6" ; exon_id "ENSE00002121183.1" ; exon_number 1 ; gene_id "SH2D4A--AC100849.1^AC100849.1^ENSG00000253557.6" ; gene_name "AC100849.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000163715.3" ; havana_transcript "OTTHUMT00000374890.1" ; level 2 ; orig_coord_info "chr8,19245148,19245489,-" ; tag basic ; transcript_id "SH2D4A--AC100849.1^ENST00000517949.5" ; transcript_name "AC100849.1-202" ; transcript_support_level 3 ; transcript_type lncRNA
L1 and L2 created:
THADA--AC012409.2 HAVANA gene 59743 65023 . + . FI_gene_label "AC012409.2^ENSG00000275443.2" ; ID "THADA--AC012409.2^AC012409.2^ENSG00000275443.2" ; exon_id "ENSE00003737457.1" ; exon_number 1 ; gene_id "THADA--AC012409.2^AC012409.2^ENSG00000275443.2" ; gene_name "AC012409.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000187031.2" ; havana_transcript "OTTHUMT00000474288.1" ; level 2 ; orig_coord_info "chr15,95990582,95990884,+" ; tag basic ; transcript_id "THADA--AC012409.2^ENST00000619812.1" ; transcript_name "AC012409.2-201" ; transcript_support_level 5 ; transcript_type lncRNA
THADA--AC012409.2 HAVANA RNA 59743 65023 . + . FI_gene_label "AC012409.2^ENSG00000275443.2" ; ID "THADA--AC012409.2^ENST00000619812.1" ; Parent "THADA--AC012409.2^AC012409.2^ENSG00000275443.2" ; exon_id "ENSE00003737457.1" ; exon_number 1 ; gene_id "THADA--AC012409.2^AC012409.2^ENSG00000275443.2" ; gene_name "AC012409.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000187031.2" ; havana_transcript "OTTHUMT00000474288.1" ; level 2 ; orig_coord_info "chr15,95990582,95990884,+" ; tag basic ; transcript_id "THADA--AC012409.2^ENST00000619812.1" ; transcript_name "AC012409.2-201" ; transcript_support_level 5 ; transcript_type lncRNA
L1 and L2 created:
TLK2--FAM157A HAVANA gene 40046 44186 . + . FI_gene_label "FAM157A^ENSG00000236438.7" ; ID "TLK2--FAM157A^FAM157A^ENSG00000236438.7" ; exon_id "ENSE00002579345.3" ; exon_number 1 ; gene_id "TLK2--FAM157A^FAM157A^ENSG00000236438.7" ; gene_name FAM157A ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000187506.3" ; havana_transcript "OTTHUMT00000488453.1" ; hgnc_id "HGNC:34079" ; level 2 ; orig_coord_info "chr3,198153287,198153409,+" ; tag basic ; transcript_id "TLK2--FAM157A^ENST00000437428.3" ; transcript_name "FAM157A-201" ; transcript_support_level 3 ; transcript_type processed_transcript
TLK2--FAM157A HAVANA RNA 40046 44186 . + . FI_gene_label "FAM157A^ENSG00000236438.7" ; ID "TLK2--FAM157A^ENST00000437428.3" ; Parent "TLK2--FAM157A^FAM157A^ENSG00000236438.7" ; exon_id "ENSE00002579345.3" ; exon_number 1 ; gene_id "TLK2--FAM157A^FAM157A^ENSG00000236438.7" ; gene_name FAM157A ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000187506.3" ; havana_transcript "OTTHUMT00000488453.1" ; hgnc_id "HGNC:34079" ; level 2 ; orig_coord_info "chr3,198153287,198153409,+" ; tag basic ; transcript_id "TLK2--FAM157A^ENST00000437428.3" ; transcript_name "FAM157A-201" ; transcript_support_level 3 ; transcript_type processed_transcript
L1 and L2 created:
TLK2P1--AC110079.1 HAVANA gene 1001 4192 . + . FI_gene_label "TLK2P1^ENSG00000226049.3" ; ID "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; exon_id "ENSE00002174619.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; gene_name TLK2P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000166422.1" ; havana_transcript "OTTHUMT00000389700.1" ; hgnc_id "HGNC:18048" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr17,34036681,34039872,-" ; tag pseudo_consens basic ; transcript_id "TLK2P1--AC110079.1^ENST00000530992.1" ; transcript_name "TLK2P1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
TLK2P1--AC110079.1 HAVANA RNA 1001 4192 . + . FI_gene_label "TLK2P1^ENSG00000226049.3" ; ID "TLK2P1--AC110079.1^ENST00000530992.1" ; Parent "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; exon_id "ENSE00002174619.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; gene_name TLK2P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000166422.1" ; havana_transcript "OTTHUMT00000389700.1" ; hgnc_id "HGNC:18048" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr17,34036681,34039872,-" ; tag pseudo_consens basic ; transcript_id "TLK2P1--AC110079.1^ENST00000530992.1" ; transcript_name "TLK2P1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
TLK2P1--AC110079.1 HAVANA gene 7193 19707 . + . FI_gene_label "AC110079.1^ENSG00000260404.3" ; ID "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; exon_id "ENSE00002625896.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; gene_name "AC110079.1" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000161164.4" ; havana_transcript "OTTHUMT00000364170.2" ; level 2 ; orig_coord_info "chr4,118591773,118591895,+" ; tag dotter_confirmed basic ; transcript_id "TLK2P1--AC110079.1^ENST00000567913.2" ; transcript_name "AC110079.1-201" ; transcript_support_level 5 ; transcript_type processed_transcript
TLK2P1--AC110079.1 HAVANA RNA 7193 19707 . + . FI_gene_label "AC110079.1^ENSG00000260404.3" ; ID "TLK2P1--AC110079.1^ENST00000567913.2" ; Parent "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; exon_id "ENSE00002625896.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; gene_name "AC110079.1" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000161164.4" ; havana_transcript "OTTHUMT00000364170.2" ; level 2 ; orig_coord_info "chr4,118591773,118591895,+" ; tag dotter_confirmed basic ; transcript_id "TLK2P1--AC110079.1^ENST00000567913.2" ; transcript_name "AC110079.1-201" ; transcript_support_level 5 ; transcript_type processed_transcript
L1 and L2 created:
TMEM163--CCNT2-AS1 HAVANA gene 17845 29979 . + . FI_gene_label "CCNT2-AS1^ENSG00000224043.8" ; ID "TMEM163--CCNT2-AS1^CCNT2-AS1^ENSG00000224043.8" ; exon_id "ENSE00001730758.1" ; exon_number 1 ; gene_id "TMEM163--CCNT2-AS1^CCNT2-AS1^ENSG00000224043.8" ; gene_name "CCNT2-AS1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000154855.3" ; havana_transcript "OTTHUMT00000337383.2" ; hgnc_id "HGNC:40130" ; level 2 ; orig_coord_info "chr2,134918563,134918670,-" ; tag basic ; transcript_id "TMEM163--CCNT2-AS1^ENST00000392929.6" ; transcript_name "CCNT2-AS1-201" ; transcript_support_level 4 ; transcript_type lncRNA
TMEM163--CCNT2-AS1 HAVANA RNA 17845 29979 . + . FI_gene_label "CCNT2-AS1^ENSG00000224043.8" ; ID "TMEM163--CCNT2-AS1^ENST00000392929.6" ; Parent "TMEM163--CCNT2-AS1^CCNT2-AS1^ENSG00000224043.8" ; exon_id "ENSE00001730758.1" ; exon_number 1 ; gene_id "TMEM163--CCNT2-AS1^CCNT2-AS1^ENSG00000224043.8" ; gene_name "CCNT2-AS1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000154855.3" ; havana_transcript "OTTHUMT00000337383.2" ; hgnc_id "HGNC:40130" ; level 2 ; orig_coord_info "chr2,134918563,134918670,-" ; tag basic ; transcript_id "TMEM163--CCNT2-AS1^ENST00000392929.6" ; transcript_name "CCNT2-AS1-201" ; transcript_support_level 4 ; transcript_type lncRNA
L1 and L2 created:
ZNF552--RPS29P30 HAVANA gene 9990 10100 . + . FI_gene_label "RPS29P30^ENSG00000268243.1" ; ID "ZNF552--RPS29P30^RPS29P30^ENSG00000268243.1" ; exon_id "ENSE00003107806.1" ; exon_number 1 ; gene_id "ZNF552--RPS29P30^RPS29P30^ENSG00000268243.1" ; gene_name RPS29P30 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000183082.1" ; havana_transcript "OTTHUMT00000465021.1" ; hgnc_id "HGNC:52363" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr19,39644502,39644612,+" ; tag pseudo_consens basic ; transcript_id "ZNF552--RPS29P30^ENST00000600975.1" ; transcript_name "RPS29P30-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
ZNF552--RPS29P30 HAVANA RNA 9990 10100 . + . FI_gene_label "RPS29P30^ENSG00000268243.1" ; ID "ZNF552--RPS29P30^ENST00000600975.1" ; Parent "ZNF552--RPS29P30^RPS29P30^ENSG00000268243.1" ; exon_id "ENSE00003107806.1" ; exon_number 1 ; gene_id "ZNF552--RPS29P30^RPS29P30^ENSG00000268243.1" ; gene_name RPS29P30 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000183082.1" ; havana_transcript "OTTHUMT00000465021.1" ; hgnc_id "HGNC:52363" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr19,39644502,39644612,+" ; tag pseudo_consens basic ; transcript_id "ZNF552--RPS29P30^ENST00000600975.1" ; transcript_name "RPS29P30-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
1437 cases fixed where L3 features have parent feature(s) missing
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--------------------------- Check5: l1 linked to l2 ----------------------------
No problem found
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--------------------------- Check6: remove orphan l1 ---------------------------
We remove only those not supposed to be orphan
None found
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------------------------- Check7: all level3 locations -------------------------
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------------------------------ Check8: check cds -------------------------------
No problem found
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----------------------------- Check9: check exons ------------------------------
No exons created
No exons locations modified
No supernumerary exons removed
No level2 locations modified
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----------------------------- Check10: check utrs ------------------------------
2627 UTRs created that were missing
No UTRs locations modified
No supernumerary UTRs removed
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------------------------ Check11: all level2 locations -------------------------
No problem found
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------------------------ Check12: all level1 locations -------------------------
We fixed 98 wrong level1 location cases
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---------------------- Check13: remove identical isoforms ----------------------
None found
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------ End checks (done in 1 second) ------
GFF3 file parsed