Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/44/42d61eccfff36483ffb63837e93de7/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/44/42d61eccfff36483ffb63837e93de7/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9c/1d979abaed073c06b5748fbff6148d/tih_rna_sample_00570_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9d/55c6f603edda9326c80d16dcf29b08/tih_rna_sample_00570_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (4 inputs)

[W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00570_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai
Load BAM file ...  Done
report duplicte rate based on sequence ...
report duplicte rate based on mapping  ...
generate R script ...
null device 
          1