Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/eb/54186cf3ace2ecc50b44b82404e693/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/eb/54186cf3ace2ecc50b44b82404e693/.command.run
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa.fai
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e3/4180c47a93835431d059aed33cc9dc/tih_rna_sample_00596_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)
Using GATK jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar
Running:
java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -Xmx60620M -XX:-UsePerfData -XX:ParallelGCThreads=2 -jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar MarkDuplicates --INPUT tih_rna_sample_00596_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam --OUTPUT tih_rna_sample_00596_B23MVV7LT4_1.md.bam --METRICS_FILE tih_rna_sample_00596_B23MVV7LT4_1.md.bam.metrics --TMP_DIR . --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa -REMOVE_DUPLICATES false -VALIDATION_STRINGENCY LENIENT
08:48:36.483 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar!/com/intel/gkl/native/libgkl_compression.so
[Mon Jun 08 08:48:36 GMT 2026] MarkDuplicates --INPUT tih_rna_sample_00596_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam --OUTPUT tih_rna_sample_00596_B23MVV7LT4_1.md.bam --METRICS_FILE tih_rna_sample_00596_B23MVV7LT4_1.md.bam.metrics --REMOVE_DUPLICATES false --TMP_DIR . --VALIDATION_STRINGENCY LENIENT --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --FLOW_MODE false --FLOW_QUALITY_SUM_STRATEGY false --USE_END_IN_UNPAIRED_READS false --USE_UNPAIRED_CLIPPED_END false --UNPAIRED_END_UNCERTAINTY 0 --FLOW_SKIP_FIRST_N_FLOWS 0 --FLOW_Q_IS_KNOWN_END false --FLOW_EFFECTIVE_QUALITY_THRESHOLD 15 --ADD_PG_TAG_TO_READS true --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX <optimized capture of last three ':' separated fields as numeric values> --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --VERBOSITY INFO --QUIET false --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Mon Jun 08 08:48:36 GMT 2026] Executing as ?@nf-eb54186cf3ace2ecc50b44b82404e693-b583b-4r6d7 on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 17.0.3-internal+0-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:4.4.0.0
INFO 2026-06-08 08:48:36 MarkDuplicates Start of doWork freeMemory: 105494752; totalMemory: 134217728; maxMemory: 63585648640
INFO 2026-06-08 08:48:36 MarkDuplicates Reading input file and constructing read end information.
INFO 2026-06-08 08:48:36 MarkDuplicates Will retain up to 230382784 data points before spilling to disk.
INFO 2026-06-08 08:48:40 MarkDuplicates Read 1,000,000 records. Elapsed time: 00:00:02s. Time for last 1,000,000: 2s. Last read position: chr1:1,211,534
INFO 2026-06-08 08:48:40 MarkDuplicates Tracking 3074 as yet unmatched pairs. 377 records in RAM.
INFO 2026-06-08 08:48:43 MarkDuplicates Read 2,000,000 records. Elapsed time: 00:00:05s. Time for last 1,000,000: 2s. Last read position: chr1:1,564,823
INFO 2026-06-08 08:48:43 MarkDuplicates Tracking 6720 as yet unmatched pairs. 1003 records in RAM.
INFO 2026-06-08 08:48:44 MarkDuplicates Read 3,000,000 records. Elapsed time: 00:00:06s. Time for last 1,000,000: 1s. Last read position: chr1:3,729,415
INFO 2026-06-08 08:48:44 MarkDuplicates Tracking 8722 as yet unmatched pairs. 112 records in RAM.
INFO 2026-06-08 08:48:46 MarkDuplicates Read 4,000,000 records. Elapsed time: 00:00:08s. Time for last 1,000,000: 1s. Last read position: chr1:8,557,418
INFO 2026-06-08 08:48:46 MarkDuplicates Tracking 11687 as yet unmatched pairs. 255 records in RAM.
INFO 2026-06-08 08:48:49 MarkDuplicates Read 5,000,000 records. Elapsed time: 00:00:11s. Time for last 1,000,000: 2s. Last read position: chr1:11,114,321
INFO 2026-06-08 08:48:49 MarkDuplicates Tracking 14296 as yet unmatched pairs. 259 records in RAM.
INFO 2026-06-08 08:48:51 MarkDuplicates Read 6,000,000 records. Elapsed time: 00:00:13s. Time for last 1,000,000: 1s. Last read position: chr1:13,613,692
INFO 2026-06-08 08:48:51 MarkDuplicates Tracking 17586 as yet unmatched pairs. 911 records in RAM.
INFO 2026-06-08 08:48:53 MarkDuplicates Read 7,000,000 records. Elapsed time: 00:00:15s. Time for last 1,000,000: 2s. Last read position: chr1:16,241,241
INFO 2026-06-08 08:48:53 MarkDuplicates Tracking 19246 as yet unmatched pairs. 36 records in RAM.
INFO 2026-06-08 08:48:55 MarkDuplicates Read 8,000,000 records. Elapsed time: 00:00:17s. Time for last 1,000,000: 2s. Last read position: chr1:19,161,019
INFO 2026-06-08 08:48:55 MarkDuplicates Tracking 22393 as yet unmatched pairs. 624 records in RAM.
INFO 2026-06-08 08:48:57 MarkDuplicates Read 9,000,000 records. Elapsed time: 00:00:19s. Time for last 1,000,000: 2s. Last read position: chr1:20,973,024
INFO 2026-06-08 08:48:57 MarkDuplicates Tracking 24402 as yet unmatched pairs. 101 records in RAM.
INFO 2026-06-08 08:48:59 MarkDuplicates Read 10,000,000 records. Elapsed time: 00:00:21s. Time for last 1,000,000: 1s. Last read position: chr1:21,861,800
INFO 2026-06-08 08:48:59 MarkDuplicates Tracking 27653 as yet unmatched pairs. 806 records in RAM.
INFO 2026-06-08 08:49:02 MarkDuplicates Read 11,000,000 records. Elapsed time: 00:00:24s. Time for last 1,000,000: 2s. Last read position: chr1:23,408,687
INFO 2026-06-08 08:49:02 MarkDuplicates Tracking 29642 as yet unmatched pairs. 316 records in RAM.
INFO 2026-06-08 08:49:04 MarkDuplicates Read 12,000,000 records. Elapsed time: 00:00:26s. Time for last 1,000,000: 1s. Last read position: chr1:26,269,468
INFO 2026-06-08 08:49:04 MarkDuplicates Tracking 31870 as yet unmatched pairs. 147 records in RAM.
INFO 2026-06-08 08:49:05 MarkDuplicates Read 13,000,000 records. Elapsed time: 00:00:28s. Time for last 1,000,000: 1s. Last read position: chr1:27,357,799
INFO 2026-06-08 08:49:05 MarkDuplicates Tracking 34757 as yet unmatched pairs. 414 records in RAM.
INFO 2026-06-08 08:49:07 MarkDuplicates Read 14,000,000 records. Elapsed time: 00:00:29s. Time for last 1,000,000: 1s. Last read position: chr1:30,738,963
INFO 2026-06-08 08:49:07 MarkDuplicates Tracking 37843 as yet unmatched pairs. 920 records in RAM.
INFO 2026-06-08 08:49:09 MarkDuplicates Read 15,000,000 records. Elapsed time: 00:00:31s. Time for last 1,000,000: 1s. Last read position: chr1:32,228,575
INFO 2026-06-08 08:49:09 MarkDuplicates Tracking 40582 as yet unmatched pairs. 980 records in RAM.
INFO 2026-06-08 08:49:11 MarkDuplicates Read 16,000,000 records. Elapsed time: 00:00:33s. Time for last 1,000,000: 2s. Last read position: chr1:33,334,181
INFO 2026-06-08 08:49:11 MarkDuplicates Tracking 42891 as yet unmatched pairs. 696 records in RAM.
INFO 2026-06-08 08:49:13 MarkDuplicates Read 17,000,000 records. Elapsed time: 00:00:35s. Time for last 1,000,000: 1s. Last read position: chr1:36,296,630
INFO 2026-06-08 08:49:13 MarkDuplicates Tracking 45397 as yet unmatched pairs. 378 records in RAM.
INFO 2026-06-08 08:49:15 MarkDuplicates Read 18,000,000 records. Elapsed time: 00:00:37s. Time for last 1,000,000: 1s. Last read position: chr1:39,357,489
INFO 2026-06-08 08:49:15 MarkDuplicates Tracking 48413 as yet unmatched pairs. 876 records in RAM.
INFO 2026-06-08 08:49:17 MarkDuplicates Read 19,000,000 records. Elapsed time: 00:00:39s. Time for last 1,000,000: 1s. Last read position: chr1:41,513,570
INFO 2026-06-08 08:49:17 MarkDuplicates Tracking 50198 as yet unmatched pairs. 217 records in RAM.
INFO 2026-06-08 08:49:18 MarkDuplicates Read 20,000,000 records. Elapsed time: 00:00:41s. Time for last 1,000,000: 1s. Last read position: chr1:43,605,222
INFO 2026-06-08 08:49:18 MarkDuplicates Tracking 53459 as yet unmatched pairs. 705 records in RAM.
INFO 2026-06-08 08:49:20 MarkDuplicates Read 21,000,000 records. Elapsed time: 00:00:42s. Time for last 1,000,000: 1s. Last read position: chr1:45,688,260
INFO 2026-06-08 08:49:20 MarkDuplicates Tracking 55544 as yet unmatched pairs. 297 records in RAM.
INFO 2026-06-08 08:49:22 MarkDuplicates Read 22,000,000 records. Elapsed time: 00:00:44s. Time for last 1,000,000: 1s. Last read position: chr1:52,083,348
INFO 2026-06-08 08:49:22 MarkDuplicates Tracking 57965 as yet unmatched pairs. 307 records in RAM.
INFO 2026-06-08 08:49:24 MarkDuplicates Read 23,000,000 records. Elapsed time: 00:00:46s. Time for last 1,000,000: 1s. Last read position: chr1:58,576,934
INFO 2026-06-08 08:49:24 MarkDuplicates Tracking 60765 as yet unmatched pairs. 403 records in RAM.
INFO 2026-06-08 08:49:26 MarkDuplicates Read 24,000,000 records. Elapsed time: 00:00:48s. Time for last 1,000,000: 2s. Last read position: chr1:75,728,421
INFO 2026-06-08 08:49:26 MarkDuplicates Tracking 63356 as yet unmatched pairs. 697 records in RAM.
INFO 2026-06-08 08:49:29 MarkDuplicates Read 25,000,000 records. Elapsed time: 00:00:51s. Time for last 1,000,000: 2s. Last read position: chr1:90,939,187
INFO 2026-06-08 08:49:29 MarkDuplicates Tracking 65139 as yet unmatched pairs. 244 records in RAM.
INFO 2026-06-08 08:49:31 MarkDuplicates Read 26,000,000 records. Elapsed time: 00:00:53s. Time for last 1,000,000: 2s. Last read position: chr1:108,934,853
INFO 2026-06-08 08:49:31 MarkDuplicates Tracking 67462 as yet unmatched pairs. 310 records in RAM.
INFO 2026-06-08 08:49:33 MarkDuplicates Read 27,000,000 records. Elapsed time: 00:00:55s. Time for last 1,000,000: 1s. Last read position: chr1:110,896,644
INFO 2026-06-08 08:49:33 MarkDuplicates Tracking 70454 as yet unmatched pairs. 726 records in RAM.
INFO 2026-06-08 08:49:35 MarkDuplicates Read 28,000,000 records. Elapsed time: 00:00:57s. Time for last 1,000,000: 2s. Last read position: chr1:113,970,099
INFO 2026-06-08 08:49:35 MarkDuplicates Tracking 73193 as yet unmatched pairs. 1117 records in RAM.
INFO 2026-06-08 08:49:37 MarkDuplicates Read 29,000,000 records. Elapsed time: 00:00:59s. Time for last 1,000,000: 1s. Last read position: chr1:117,460,589
INFO 2026-06-08 08:49:37 MarkDuplicates Tracking 74517 as yet unmatched pairs. 221 records in RAM.
INFO 2026-06-08 08:49:38 MarkDuplicates Read 30,000,000 records. Elapsed time: 00:01:01s. Time for last 1,000,000: 1s. Last read position: chr1:120,453,427
INFO 2026-06-08 08:49:38 MarkDuplicates Tracking 76733 as yet unmatched pairs. 282 records in RAM.
INFO 2026-06-08 08:49:40 MarkDuplicates Read 31,000,000 records. Elapsed time: 00:01:02s. Time for last 1,000,000: 1s. Last read position: chr1:145,927,039
INFO 2026-06-08 08:49:40 MarkDuplicates Tracking 77965 as yet unmatched pairs. 99 records in RAM.
INFO 2026-06-08 08:49:42 MarkDuplicates Read 32,000,000 records. Elapsed time: 00:01:04s. Time for last 1,000,000: 1s. Last read position: chr1:148,124,899
INFO 2026-06-08 08:49:42 MarkDuplicates Tracking 79894 as yet unmatched pairs. 663 records in RAM.
INFO 2026-06-08 08:49:43 MarkDuplicates Read 33,000,000 records. Elapsed time: 00:01:05s. Time for last 1,000,000: 1s. Last read position: chr1:149,495,907
INFO 2026-06-08 08:49:43 MarkDuplicates Tracking 80248 as yet unmatched pairs. 38 records in RAM.
INFO 2026-06-08 08:49:44 MarkDuplicates Read 34,000,000 records. Elapsed time: 00:01:06s. Time for last 1,000,000: 1s. Last read position: chr1:149,886,275
INFO 2026-06-08 08:49:44 MarkDuplicates Tracking 83162 as yet unmatched pairs. 1567 records in RAM.
INFO 2026-06-08 08:49:46 MarkDuplicates Read 35,000,000 records. Elapsed time: 00:01:08s. Time for last 1,000,000: 1s. Last read position: chr1:150,577,402
INFO 2026-06-08 08:49:46 MarkDuplicates Tracking 85807 as yet unmatched pairs. 1860 records in RAM.
INFO 2026-06-08 08:49:48 MarkDuplicates Read 36,000,000 records. Elapsed time: 00:01:10s. Time for last 1,000,000: 1s. Last read position: chr1:151,287,463
INFO 2026-06-08 08:49:48 MarkDuplicates Tracking 86992 as yet unmatched pairs. 447 records in RAM.
INFO 2026-06-08 08:49:50 MarkDuplicates Read 37,000,000 records. Elapsed time: 00:01:12s. Time for last 1,000,000: 2s. Last read position: chr1:153,360,688
INFO 2026-06-08 08:49:50 MarkDuplicates Tracking 89584 as yet unmatched pairs. 723 records in RAM.
INFO 2026-06-08 08:49:52 MarkDuplicates Read 38,000,000 records. Elapsed time: 00:01:14s. Time for last 1,000,000: 2s. Last read position: chr1:153,975,877
INFO 2026-06-08 08:49:52 MarkDuplicates Tracking 93089 as yet unmatched pairs. 1543 records in RAM.
INFO 2026-06-08 08:49:54 MarkDuplicates Read 39,000,000 records. Elapsed time: 00:01:16s. Time for last 1,000,000: 1s. Last read position: chr1:154,268,850
INFO 2026-06-08 08:49:54 MarkDuplicates Tracking 94207 as yet unmatched pairs. 574 records in RAM.
INFO 2026-06-08 08:49:56 MarkDuplicates Read 40,000,000 records. Elapsed time: 00:01:18s. Time for last 1,000,000: 2s. Last read position: chr1:154,990,347
INFO 2026-06-08 08:49:56 MarkDuplicates Tracking 96935 as yet unmatched pairs. 659 records in RAM.
INFO 2026-06-08 08:49:58 MarkDuplicates Read 41,000,000 records. Elapsed time: 00:01:20s. Time for last 1,000,000: 1s. Last read position: chr1:155,188,407
INFO 2026-06-08 08:49:58 MarkDuplicates Tracking 100814 as yet unmatched pairs. 2039 records in RAM.
INFO 2026-06-08 08:49:59 MarkDuplicates Read 42,000,000 records. Elapsed time: 00:01:21s. Time for last 1,000,000: 1s. Last read position: chr1:155,236,439
INFO 2026-06-08 08:49:59 MarkDuplicates Tracking 100518 as yet unmatched pairs. 354 records in RAM.
INFO 2026-06-08 08:50:01 MarkDuplicates Read 43,000,000 records. Elapsed time: 00:01:23s. Time for last 1,000,000: 1s. Last read position: chr1:155,749,981
INFO 2026-06-08 08:50:01 MarkDuplicates Tracking 103349 as yet unmatched pairs. 1044 records in RAM.
INFO 2026-06-08 08:50:02 MarkDuplicates Read 44,000,000 records. Elapsed time: 00:01:24s. Time for last 1,000,000: 1s. Last read position: chr1:156,136,140
INFO 2026-06-08 08:50:02 MarkDuplicates Tracking 105854 as yet unmatched pairs. 847 records in RAM.
INFO 2026-06-08 08:50:05 MarkDuplicates Read 45,000,000 records. Elapsed time: 00:01:27s. Time for last 1,000,000: 2s. Last read position: chr1:156,591,875
INFO 2026-06-08 08:50:05 MarkDuplicates Tracking 109099 as yet unmatched pairs. 1370 records in RAM.
INFO 2026-06-08 08:50:07 MarkDuplicates Read 46,000,000 records. Elapsed time: 00:01:29s. Time for last 1,000,000: 2s. Last read position: chr1:159,049,496
INFO 2026-06-08 08:50:07 MarkDuplicates Tracking 110497 as yet unmatched pairs. 410 records in RAM.
INFO 2026-06-08 08:50:09 MarkDuplicates Read 47,000,000 records. Elapsed time: 00:01:31s. Time for last 1,000,000: 1s. Last read position: chr1:161,041,800
INFO 2026-06-08 08:50:09 MarkDuplicates Tracking 113635 as yet unmatched pairs. 1007 records in RAM.
INFO 2026-06-08 08:50:10 MarkDuplicates Read 48,000,000 records. Elapsed time: 00:01:32s. Time for last 1,000,000: 1s. Last read position: chr1:162,287,343
INFO 2026-06-08 08:50:10 MarkDuplicates Tracking 115181 as yet unmatched pairs. 172 records in RAM.
INFO 2026-06-08 08:50:12 MarkDuplicates Read 49,000,000 records. Elapsed time: 00:01:34s. Time for last 1,000,000: 1s. Last read position: chr1:169,106,903
INFO 2026-06-08 08:50:12 MarkDuplicates Tracking 124140 as yet unmatched pairs. 6624 records in RAM.
INFO 2026-06-08 08:50:14 MarkDuplicates Read 50,000,000 records. Elapsed time: 00:01:36s. Time for last 1,000,000: 1s. Last read position: chr1:171,557,581
INFO 2026-06-08 08:50:14 MarkDuplicates Tracking 122373 as yet unmatched pairs. 2652 records in RAM.
INFO 2026-06-08 08:50:15 MarkDuplicates Read 51,000,000 records. Elapsed time: 00:01:37s. Time for last 1,000,000: 1s. Last read position: chr1:180,095,826
INFO 2026-06-08 08:50:15 MarkDuplicates Tracking 122160 as yet unmatched pairs. 199 records in RAM.
INFO 2026-06-08 08:50:17 MarkDuplicates Read 52,000,000 records. Elapsed time: 00:01:39s. Time for last 1,000,000: 1s. Last read position: chr1:185,125,067
INFO 2026-06-08 08:50:17 MarkDuplicates Tracking 124599 as yet unmatched pairs. 188 records in RAM.
INFO 2026-06-08 08:50:18 MarkDuplicates Read 53,000,000 records. Elapsed time: 00:01:41s. Time for last 1,000,000: 1s. Last read position: chr1:199,755,188
INFO 2026-06-08 08:50:18 MarkDuplicates Tracking 126512 as yet unmatched pairs. 18 records in RAM.
INFO 2026-06-08 08:50:20 MarkDuplicates Read 54,000,000 records. Elapsed time: 00:01:42s. Time for last 1,000,000: 1s. Last read position: chr1:202,733,480
INFO 2026-06-08 08:50:20 MarkDuplicates Tracking 129279 as yet unmatched pairs. 291 records in RAM.
INFO 2026-06-08 08:50:22 MarkDuplicates Read 55,000,000 records. Elapsed time: 00:01:44s. Time for last 1,000,000: 1s. Last read position: chr1:203,852,160
INFO 2026-06-08 08:50:22 MarkDuplicates Tracking 132965 as yet unmatched pairs. 1574 records in RAM.
INFO 2026-06-08 08:50:24 MarkDuplicates Read 56,000,000 records. Elapsed time: 00:01:46s. Time for last 1,000,000: 2s. Last read position: chr1:206,450,425
INFO 2026-06-08 08:50:24 MarkDuplicates Tracking 133928 as yet unmatched pairs. 208 records in RAM.
INFO 2026-06-08 08:50:26 MarkDuplicates Read 57,000,000 records. Elapsed time: 00:01:48s. Time for last 1,000,000: 2s. Last read position: chr1:207,752,208
INFO 2026-06-08 08:50:26 MarkDuplicates Tracking 138830 as yet unmatched pairs. 2739 records in RAM.
INFO 2026-06-08 08:50:28 MarkDuplicates Read 58,000,000 records. Elapsed time: 00:01:50s. Time for last 1,000,000: 1s. Last read position: chr1:220,001,144
INFO 2026-06-08 08:50:28 MarkDuplicates Tracking 138458 as yet unmatched pairs. 106 records in RAM.
INFO 2026-06-08 08:50:29 MarkDuplicates Read 59,000,000 records. Elapsed time: 00:01:51s. Time for last 1,000,000: 1s. Last read position: chr1:225,865,896
INFO 2026-06-08 08:50:29 MarkDuplicates Tracking 140834 as yet unmatched pairs. 329 records in RAM.
INFO 2026-06-08 08:50:31 MarkDuplicates Read 60,000,000 records. Elapsed time: 00:01:53s. Time for last 1,000,000: 1s. Last read position: chr1:228,304,409
INFO 2026-06-08 08:50:31 MarkDuplicates Tracking 143560 as yet unmatched pairs. 349 records in RAM.
INFO 2026-06-08 08:50:33 MarkDuplicates Read 61,000,000 records. Elapsed time: 00:01:55s. Time for last 1,000,000: 1s. Last read position: chr1:234,609,275
INFO 2026-06-08 08:50:33 MarkDuplicates Tracking 146967 as yet unmatched pairs. 768 records in RAM.
INFO 2026-06-08 08:50:34 MarkDuplicates Read 62,000,000 records. Elapsed time: 00:01:56s. Time for last 1,000,000: 1s. Last read position: chr1:244,863,666
INFO 2026-06-08 08:50:34 MarkDuplicates Tracking 151297 as yet unmatched pairs. 2708 records in RAM.
INFO 2026-06-08 08:50:38 MarkDuplicates Read 63,000,000 records. Elapsed time: 00:02:00s. Time for last 1,000,000: 3s. Last read position: chr2:8,733,533
INFO 2026-06-08 08:50:38 MarkDuplicates Tracking 151653 as yet unmatched pairs. 151176 records in RAM.
INFO 2026-06-08 08:50:40 MarkDuplicates Read 64,000,000 records. Elapsed time: 00:02:02s. Time for last 1,000,000: 1s. Last read position: chr2:18,584,984
INFO 2026-06-08 08:50:40 MarkDuplicates Tracking 153832 as yet unmatched pairs. 153350 records in RAM.
INFO 2026-06-08 08:50:41 MarkDuplicates Read 65,000,000 records. Elapsed time: 00:02:03s. Time for last 1,000,000: 1s. Last read position: chr2:25,759,505
INFO 2026-06-08 08:50:41 MarkDuplicates Tracking 156500 as yet unmatched pairs. 156013 records in RAM.
INFO 2026-06-08 08:50:44 MarkDuplicates Read 66,000,000 records. Elapsed time: 00:02:06s. Time for last 1,000,000: 2s. Last read position: chr2:27,373,821
INFO 2026-06-08 08:50:44 MarkDuplicates Tracking 159678 as yet unmatched pairs. 159177 records in RAM.
INFO 2026-06-08 08:50:46 MarkDuplicates Read 67,000,000 records. Elapsed time: 00:02:08s. Time for last 1,000,000: 1s. Last read position: chr2:32,357,309
INFO 2026-06-08 08:50:46 MarkDuplicates Tracking 162804 as yet unmatched pairs. 162289 records in RAM.
INFO 2026-06-08 08:50:47 MarkDuplicates Read 68,000,000 records. Elapsed time: 00:02:09s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,264
INFO 2026-06-08 08:50:47 MarkDuplicates Tracking 310329 as yet unmatched pairs. 151840 records in RAM.
INFO 2026-06-08 08:50:49 MarkDuplicates Read 69,000,000 records. Elapsed time: 00:02:12s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,264
INFO 2026-06-08 08:50:49 MarkDuplicates Tracking 988910 as yet unmatched pairs. 105990 records in RAM.
INFO 2026-06-08 08:50:51 MarkDuplicates Read 70,000,000 records. Elapsed time: 00:02:13s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,406
INFO 2026-06-08 08:50:51 MarkDuplicates Tracking 1280791 as yet unmatched pairs. 86370 records in RAM.
INFO 2026-06-08 08:50:52 MarkDuplicates Read 71,000,000 records. Elapsed time: 00:02:14s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,406
INFO 2026-06-08 08:50:52 MarkDuplicates Tracking 1286764 as yet unmatched pairs. 85941 records in RAM.
INFO 2026-06-08 08:50:54 MarkDuplicates Read 72,000,000 records. Elapsed time: 00:02:16s. Time for last 1,000,000: 1s. Last read position: chr2:38,343,368
INFO 2026-06-08 08:50:54 MarkDuplicates Tracking 1365824 as yet unmatched pairs. 79679 records in RAM.
INFO 2026-06-08 08:50:55 MarkDuplicates Read 73,000,000 records. Elapsed time: 00:02:17s. Time for last 1,000,000: 1s. Last read position: chr2:43,577,042
INFO 2026-06-08 08:50:55 MarkDuplicates Tracking 1364679 as yet unmatched pairs. 78519 records in RAM.
INFO 2026-06-08 08:50:57 MarkDuplicates Read 74,000,000 records. Elapsed time: 00:02:19s. Time for last 1,000,000: 1s. Last read position: chr2:47,823,249
INFO 2026-06-08 08:50:57 MarkDuplicates Tracking 1360594 as yet unmatched pairs. 74431 records in RAM.
INFO 2026-06-08 08:50:59 MarkDuplicates Read 75,000,000 records. Elapsed time: 00:02:21s. Time for last 1,000,000: 1s. Last read position: chr2:54,649,148
INFO 2026-06-08 08:50:59 MarkDuplicates Tracking 1361107 as yet unmatched pairs. 74935 records in RAM.
INFO 2026-06-08 08:51:00 MarkDuplicates Read 76,000,000 records. Elapsed time: 00:02:22s. Time for last 1,000,000: 1s. Last read position: chr2:61,256,938
INFO 2026-06-08 08:51:00 MarkDuplicates Tracking 1355806 as yet unmatched pairs. 69629 records in RAM.
INFO 2026-06-08 08:51:02 MarkDuplicates Read 77,000,000 records. Elapsed time: 00:02:24s. Time for last 1,000,000: 1s. Last read position: chr2:68,464,214
INFO 2026-06-08 08:51:02 MarkDuplicates Tracking 1353442 as yet unmatched pairs. 67262 records in RAM.
INFO 2026-06-08 08:51:04 MarkDuplicates Read 78,000,000 records. Elapsed time: 00:02:26s. Time for last 1,000,000: 1s. Last read position: chr2:71,070,817
INFO 2026-06-08 08:51:04 MarkDuplicates Tracking 1351421 as yet unmatched pairs. 65237 records in RAM.
INFO 2026-06-08 08:51:05 MarkDuplicates Read 79,000,000 records. Elapsed time: 00:02:27s. Time for last 1,000,000: 1s. Last read position: chr2:74,205,709
INFO 2026-06-08 08:51:05 MarkDuplicates Tracking 1349349 as yet unmatched pairs. 63158 records in RAM.
INFO 2026-06-08 08:51:07 MarkDuplicates Read 80,000,000 records. Elapsed time: 00:02:29s. Time for last 1,000,000: 1s. Last read position: chr2:79,120,505
INFO 2026-06-08 08:51:07 MarkDuplicates Tracking 1346626 as yet unmatched pairs. 60427 records in RAM.
INFO 2026-06-08 08:51:09 MarkDuplicates Read 81,000,000 records. Elapsed time: 00:02:31s. Time for last 1,000,000: 2s. Last read position: chr2:86,166,553
INFO 2026-06-08 08:51:09 MarkDuplicates Tracking 1343948 as yet unmatched pairs. 57746 records in RAM.
INFO 2026-06-08 08:51:11 MarkDuplicates Read 82,000,000 records. Elapsed time: 00:02:33s. Time for last 1,000,000: 1s. Last read position: chr2:95,288,221
INFO 2026-06-08 08:51:11 MarkDuplicates Tracking 1342617 as yet unmatched pairs. 56403 records in RAM.
INFO 2026-06-08 08:51:12 MarkDuplicates Read 83,000,000 records. Elapsed time: 00:02:35s. Time for last 1,000,000: 1s. Last read position: chr2:96,828,897
INFO 2026-06-08 08:51:12 MarkDuplicates Tracking 1339895 as yet unmatched pairs. 53669 records in RAM.
INFO 2026-06-08 08:51:15 MarkDuplicates Read 84,000,000 records. Elapsed time: 00:02:37s. Time for last 1,000,000: 2s. Last read position: chr2:100,990,878
INFO 2026-06-08 08:51:15 MarkDuplicates Tracking 1337739 as yet unmatched pairs. 51501 records in RAM.
INFO 2026-06-08 08:51:16 MarkDuplicates Read 85,000,000 records. Elapsed time: 00:02:38s. Time for last 1,000,000: 1s. Last read position: chr2:108,496,664
INFO 2026-06-08 08:51:16 MarkDuplicates Tracking 1335328 as yet unmatched pairs. 49081 records in RAM.
INFO 2026-06-08 08:51:19 MarkDuplicates Read 86,000,000 records. Elapsed time: 00:02:41s. Time for last 1,000,000: 2s. Last read position: chr2:109,836,398
INFO 2026-06-08 08:51:19 MarkDuplicates Tracking 1333641 as yet unmatched pairs. 47389 records in RAM.
INFO 2026-06-08 08:51:20 MarkDuplicates Read 87,000,000 records. Elapsed time: 00:02:42s. Time for last 1,000,000: 1s. Last read position: chr2:112,755,978
INFO 2026-06-08 08:51:20 MarkDuplicates Tracking 1332068 as yet unmatched pairs. 45810 records in RAM.
INFO 2026-06-08 08:51:21 MarkDuplicates Read 88,000,000 records. Elapsed time: 00:02:44s. Time for last 1,000,000: 1s. Last read position: chr2:121,235,289
INFO 2026-06-08 08:51:21 MarkDuplicates Tracking 1330137 as yet unmatched pairs. 43867 records in RAM.
INFO 2026-06-08 08:51:23 MarkDuplicates Read 89,000,000 records. Elapsed time: 00:02:45s. Time for last 1,000,000: 1s. Last read position: chr2:131,120,946
INFO 2026-06-08 08:51:23 MarkDuplicates Tracking 1327732 as yet unmatched pairs. 41456 records in RAM.
INFO 2026-06-08 08:51:25 MarkDuplicates Read 90,000,000 records. Elapsed time: 00:02:47s. Time for last 1,000,000: 1s. Last read position: chr2:151,671,050
INFO 2026-06-08 08:51:25 MarkDuplicates Tracking 1325372 as yet unmatched pairs. 39081 records in RAM.
INFO 2026-06-08 08:51:26 MarkDuplicates Read 91,000,000 records. Elapsed time: 00:02:48s. Time for last 1,000,000: 1s. Last read position: chr2:168,561,126
INFO 2026-06-08 08:51:26 MarkDuplicates Tracking 1323524 as yet unmatched pairs. 37229 records in RAM.
INFO 2026-06-08 08:51:28 MarkDuplicates Read 92,000,000 records. Elapsed time: 00:02:50s. Time for last 1,000,000: 1s. Last read position: chr2:175,180,128
INFO 2026-06-08 08:51:28 MarkDuplicates Tracking 1322867 as yet unmatched pairs. 36571 records in RAM.
INFO 2026-06-08 08:51:30 MarkDuplicates Read 93,000,000 records. Elapsed time: 00:02:52s. Time for last 1,000,000: 1s. Last read position: chr2:186,622,373
INFO 2026-06-08 08:51:30 MarkDuplicates Tracking 1319369 as yet unmatched pairs. 33068 records in RAM.
INFO 2026-06-08 08:51:32 MarkDuplicates Read 94,000,000 records. Elapsed time: 00:02:54s. Time for last 1,000,000: 2s. Last read position: chr2:189,039,479
INFO 2026-06-08 08:51:32 MarkDuplicates Tracking 1316881 as yet unmatched pairs. 30580 records in RAM.
INFO 2026-06-08 08:51:34 MarkDuplicates Read 95,000,000 records. Elapsed time: 00:02:56s. Time for last 1,000,000: 2s. Last read position: chr2:197,402,635
INFO 2026-06-08 08:51:34 MarkDuplicates Tracking 1314855 as yet unmatched pairs. 28546 records in RAM.
INFO 2026-06-08 08:51:36 MarkDuplicates Read 96,000,000 records. Elapsed time: 00:02:58s. Time for last 1,000,000: 2s. Last read position: chr2:203,190,981
INFO 2026-06-08 08:51:36 MarkDuplicates Tracking 1311657 as yet unmatched pairs. 25335 records in RAM.
INFO 2026-06-08 08:51:38 MarkDuplicates Read 97,000,000 records. Elapsed time: 00:03:00s. Time for last 1,000,000: 1s. Last read position: chr2:215,349,159
INFO 2026-06-08 08:51:38 MarkDuplicates Tracking 1309753 as yet unmatched pairs. 23418 records in RAM.
INFO 2026-06-08 08:51:40 MarkDuplicates Read 98,000,000 records. Elapsed time: 00:03:02s. Time for last 1,000,000: 1s. Last read position: chr2:215,406,318
INFO 2026-06-08 08:51:40 MarkDuplicates Tracking 1310337 as yet unmatched pairs. 23996 records in RAM.
INFO 2026-06-08 08:51:41 MarkDuplicates Read 99,000,000 records. Elapsed time: 00:03:03s. Time for last 1,000,000: 1s. Last read position: chr2:216,678,889
INFO 2026-06-08 08:51:41 MarkDuplicates Tracking 1306583 as yet unmatched pairs. 20226 records in RAM.
INFO 2026-06-08 08:51:43 MarkDuplicates Read 100,000,000 records. Elapsed time: 00:03:05s. Time for last 1,000,000: 2s. Last read position: chr2:218,642,476
INFO 2026-06-08 08:51:43 MarkDuplicates Tracking 1302525 as yet unmatched pairs. 16162 records in RAM.
INFO 2026-06-08 08:51:45 MarkDuplicates Read 101,000,000 records. Elapsed time: 00:03:07s. Time for last 1,000,000: 1s. Last read position: chr2:219,567,273
INFO 2026-06-08 08:51:45 MarkDuplicates Tracking 1299704 as yet unmatched pairs. 13326 records in RAM.
INFO 2026-06-08 08:51:47 MarkDuplicates Read 102,000,000 records. Elapsed time: 00:03:09s. Time for last 1,000,000: 1s. Last read position: chr2:230,539,211
INFO 2026-06-08 08:51:47 MarkDuplicates Tracking 1296920 as yet unmatched pairs. 10516 records in RAM.
INFO 2026-06-08 08:51:49 MarkDuplicates Read 103,000,000 records. Elapsed time: 00:03:11s. Time for last 1,000,000: 2s. Last read position: chr2:232,892,953
INFO 2026-06-08 08:51:49 MarkDuplicates Tracking 1294722 as yet unmatched pairs. 8313 records in RAM.
INFO 2026-06-08 08:51:51 MarkDuplicates Read 104,000,000 records. Elapsed time: 00:03:13s. Time for last 1,000,000: 1s. Last read position: chr2:237,367,087
INFO 2026-06-08 08:51:51 MarkDuplicates Tracking 1293726 as yet unmatched pairs. 7314 records in RAM.
INFO 2026-06-08 08:51:53 MarkDuplicates Read 105,000,000 records. Elapsed time: 00:03:15s. Time for last 1,000,000: 1s. Last read position: chr2:240,561,281
INFO 2026-06-08 08:51:53 MarkDuplicates Tracking 1289651 as yet unmatched pairs. 3204 records in RAM.
INFO 2026-06-08 08:51:55 MarkDuplicates Read 106,000,000 records. Elapsed time: 00:03:17s. Time for last 1,000,000: 1s. Last read position: chr2:241,499,256
INFO 2026-06-08 08:51:55 MarkDuplicates Tracking 1287452 as yet unmatched pairs. 998 records in RAM.
INFO 2026-06-08 08:51:57 MarkDuplicates Read 107,000,000 records. Elapsed time: 00:03:19s. Time for last 1,000,000: 2s. Last read position: chr3:9,743,751
INFO 2026-06-08 08:51:57 MarkDuplicates Tracking 1284865 as yet unmatched pairs. 75718 records in RAM.
INFO 2026-06-08 08:51:58 MarkDuplicates Read 108,000,000 records. Elapsed time: 00:03:21s. Time for last 1,000,000: 1s. Last read position: chr3:12,585,792
INFO 2026-06-08 08:51:58 MarkDuplicates Tracking 1282884 as yet unmatched pairs. 73735 records in RAM.
INFO 2026-06-08 08:52:00 MarkDuplicates Read 109,000,000 records. Elapsed time: 00:03:22s. Time for last 1,000,000: 1s. Last read position: chr3:14,667,497
INFO 2026-06-08 08:52:00 MarkDuplicates Tracking 1279326 as yet unmatched pairs. 70170 records in RAM.
INFO 2026-06-08 08:52:02 MarkDuplicates Read 110,000,000 records. Elapsed time: 00:03:24s. Time for last 1,000,000: 1s. Last read position: chr3:28,324,381
INFO 2026-06-08 08:52:02 MarkDuplicates Tracking 1277261 as yet unmatched pairs. 68098 records in RAM.
INFO 2026-06-08 08:52:04 MarkDuplicates Read 111,000,000 records. Elapsed time: 00:03:26s. Time for last 1,000,000: 1s. Last read position: chr3:36,899,179
INFO 2026-06-08 08:52:04 MarkDuplicates Tracking 1275114 as yet unmatched pairs. 65943 records in RAM.
INFO 2026-06-08 08:52:05 MarkDuplicates Read 112,000,000 records. Elapsed time: 00:03:27s. Time for last 1,000,000: 1s. Last read position: chr3:39,411,941
INFO 2026-06-08 08:52:05 MarkDuplicates Tracking 1276919 as yet unmatched pairs. 67736 records in RAM.
INFO 2026-06-08 08:52:07 MarkDuplicates Read 113,000,000 records. Elapsed time: 00:03:29s. Time for last 1,000,000: 1s. Last read position: chr3:44,753,473
INFO 2026-06-08 08:52:07 MarkDuplicates Tracking 1269639 as yet unmatched pairs. 60446 records in RAM.
INFO 2026-06-08 08:52:09 MarkDuplicates Read 114,000,000 records. Elapsed time: 00:03:31s. Time for last 1,000,000: 1s. Last read position: chr3:47,410,739
INFO 2026-06-08 08:52:09 MarkDuplicates Tracking 1267071 as yet unmatched pairs. 57876 records in RAM.
INFO 2026-06-08 08:52:10 MarkDuplicates Read 115,000,000 records. Elapsed time: 00:03:32s. Time for last 1,000,000: 1s. Last read position: chr3:48,570,432
INFO 2026-06-08 08:52:10 MarkDuplicates Tracking 1266543 as yet unmatched pairs. 57341 records in RAM.
INFO 2026-06-08 08:52:12 MarkDuplicates Read 116,000,000 records. Elapsed time: 00:03:34s. Time for last 1,000,000: 1s. Last read position: chr3:48,643,037
INFO 2026-06-08 08:52:12 MarkDuplicates Tracking 1261066 as yet unmatched pairs. 51855 records in RAM.
INFO 2026-06-08 08:52:14 MarkDuplicates Read 117,000,000 records. Elapsed time: 00:03:36s. Time for last 1,000,000: 2s. Last read position: chr3:49,357,642
INFO 2026-06-08 08:52:14 MarkDuplicates Tracking 1260909 as yet unmatched pairs. 51697 records in RAM.
INFO 2026-06-08 08:52:16 MarkDuplicates Read 118,000,000 records. Elapsed time: 00:03:39s. Time for last 1,000,000: 2s. Last read position: chr3:50,274,036
INFO 2026-06-08 08:52:16 MarkDuplicates Tracking 1256400 as yet unmatched pairs. 47182 records in RAM.
INFO 2026-06-08 08:52:18 MarkDuplicates Read 119,000,000 records. Elapsed time: 00:03:40s. Time for last 1,000,000: 1s. Last read position: chr3:52,455,705
INFO 2026-06-08 08:52:18 MarkDuplicates Tracking 1253756 as yet unmatched pairs. 44523 records in RAM.
INFO 2026-06-08 08:52:20 MarkDuplicates Read 120,000,000 records. Elapsed time: 00:03:42s. Time for last 1,000,000: 1s. Last read position: chr3:56,566,887
INFO 2026-06-08 08:52:20 MarkDuplicates Tracking 1250761 as yet unmatched pairs. 41519 records in RAM.
INFO 2026-06-08 08:52:22 MarkDuplicates Read 121,000,000 records. Elapsed time: 00:03:44s. Time for last 1,000,000: 1s. Last read position: chr3:69,187,822
INFO 2026-06-08 08:52:22 MarkDuplicates Tracking 1248501 as yet unmatched pairs. 39252 records in RAM.
INFO 2026-06-08 08:52:24 MarkDuplicates Read 122,000,000 records. Elapsed time: 00:03:46s. Time for last 1,000,000: 1s. Last read position: chr3:100,748,348
INFO 2026-06-08 08:52:24 MarkDuplicates Tracking 1246536 as yet unmatched pairs. 37269 records in RAM.
INFO 2026-06-08 08:52:25 MarkDuplicates Read 123,000,000 records. Elapsed time: 00:03:47s. Time for last 1,000,000: 1s. Last read position: chr3:114,294,085
INFO 2026-06-08 08:52:25 MarkDuplicates Tracking 1244234 as yet unmatched pairs. 34956 records in RAM.
INFO 2026-06-08 08:52:27 MarkDuplicates Read 124,000,000 records. Elapsed time: 00:03:49s. Time for last 1,000,000: 1s. Last read position: chr3:122,699,662
INFO 2026-06-08 08:52:27 MarkDuplicates Tracking 1242592 as yet unmatched pairs. 33301 records in RAM.
INFO 2026-06-08 08:52:29 MarkDuplicates Read 125,000,000 records. Elapsed time: 00:03:51s. Time for last 1,000,000: 2s. Last read position: chr3:125,929,526
INFO 2026-06-08 08:52:29 MarkDuplicates Tracking 1239700 as yet unmatched pairs. 30399 records in RAM.
INFO 2026-06-08 08:52:31 MarkDuplicates Read 126,000,000 records. Elapsed time: 00:03:53s. Time for last 1,000,000: 1s. Last read position: chr3:128,620,548
INFO 2026-06-08 08:52:31 MarkDuplicates Tracking 1238575 as yet unmatched pairs. 29268 records in RAM.
INFO 2026-06-08 08:52:33 MarkDuplicates Read 127,000,000 records. Elapsed time: 00:03:55s. Time for last 1,000,000: 1s. Last read position: chr3:129,570,852
INFO 2026-06-08 08:52:33 MarkDuplicates Tracking 1234951 as yet unmatched pairs. 25642 records in RAM.
INFO 2026-06-08 08:52:35 MarkDuplicates Read 128,000,000 records. Elapsed time: 00:03:57s. Time for last 1,000,000: 1s. Last read position: chr3:136,151,703
INFO 2026-06-08 08:52:35 MarkDuplicates Tracking 1232710 as yet unmatched pairs. 23396 records in RAM.
INFO 2026-06-08 08:52:36 MarkDuplicates Read 129,000,000 records. Elapsed time: 00:03:58s. Time for last 1,000,000: 1s. Last read position: chr3:143,021,473
INFO 2026-06-08 08:52:36 MarkDuplicates Tracking 1230346 as yet unmatched pairs. 21031 records in RAM.
INFO 2026-06-08 08:52:38 MarkDuplicates Read 130,000,000 records. Elapsed time: 00:04:00s. Time for last 1,000,000: 1s. Last read position: chr3:155,144,366
INFO 2026-06-08 08:52:38 MarkDuplicates Tracking 1227317 as yet unmatched pairs. 17999 records in RAM.
INFO 2026-06-08 08:52:40 MarkDuplicates Read 131,000,000 records. Elapsed time: 00:04:02s. Time for last 1,000,000: 1s. Last read position: chr3:170,129,113
INFO 2026-06-08 08:52:40 MarkDuplicates Tracking 1225446 as yet unmatched pairs. 16120 records in RAM.
INFO 2026-06-08 08:52:41 MarkDuplicates Read 132,000,000 records. Elapsed time: 00:04:03s. Time for last 1,000,000: 1s. Last read position: chr3:182,869,125
INFO 2026-06-08 08:52:41 MarkDuplicates Tracking 1222708 as yet unmatched pairs. 13376 records in RAM.
INFO 2026-06-08 08:52:43 MarkDuplicates Read 133,000,000 records. Elapsed time: 00:04:05s. Time for last 1,000,000: 1s. Last read position: chr3:184,316,129
INFO 2026-06-08 08:52:43 MarkDuplicates Tracking 1225349 as yet unmatched pairs. 16013 records in RAM.
INFO 2026-06-08 08:52:45 MarkDuplicates Read 134,000,000 records. Elapsed time: 00:04:07s. Time for last 1,000,000: 1s. Last read position: chr3:186,581,439
INFO 2026-06-08 08:52:45 MarkDuplicates Tracking 1218205 as yet unmatched pairs. 8854 records in RAM.
INFO 2026-06-08 08:52:46 MarkDuplicates Read 135,000,000 records. Elapsed time: 00:04:08s. Time for last 1,000,000: 1s. Last read position: chr3:194,617,703
INFO 2026-06-08 08:52:46 MarkDuplicates Tracking 1215567 as yet unmatched pairs. 6193 records in RAM.
INFO 2026-06-08 08:52:48 MarkDuplicates Read 136,000,000 records. Elapsed time: 00:04:10s. Time for last 1,000,000: 1s. Last read position: chr3:195,781,107
INFO 2026-06-08 08:52:48 MarkDuplicates Tracking 1219747 as yet unmatched pairs. 10351 records in RAM.
INFO 2026-06-08 08:52:49 MarkDuplicates Read 137,000,000 records. Elapsed time: 00:04:11s. Time for last 1,000,000: 1s. Last read position: chr3:195,785,449
INFO 2026-06-08 08:52:49 MarkDuplicates Tracking 1219110 as yet unmatched pairs. 9710 records in RAM.
INFO 2026-06-08 08:52:51 MarkDuplicates Read 138,000,000 records. Elapsed time: 00:04:13s. Time for last 1,000,000: 1s. Last read position: chr3:196,073,965
INFO 2026-06-08 08:52:51 MarkDuplicates Tracking 1211677 as yet unmatched pairs. 2268 records in RAM.
INFO 2026-06-08 08:52:53 MarkDuplicates Read 139,000,000 records. Elapsed time: 00:04:15s. Time for last 1,000,000: 1s. Last read position: chr4:947,783
INFO 2026-06-08 08:52:53 MarkDuplicates Tracking 1208886 as yet unmatched pairs. 35646 records in RAM.
INFO 2026-06-08 08:52:54 MarkDuplicates Read 140,000,000 records. Elapsed time: 00:04:16s. Time for last 1,000,000: 1s. Last read position: chr4:2,261,746
INFO 2026-06-08 08:52:54 MarkDuplicates Tracking 1206380 as yet unmatched pairs. 33115 records in RAM.
INFO 2026-06-08 08:52:56 MarkDuplicates Read 141,000,000 records. Elapsed time: 00:04:18s. Time for last 1,000,000: 1s. Last read position: chr4:6,880,854
INFO 2026-06-08 08:52:56 MarkDuplicates Tracking 1203144 as yet unmatched pairs. 29870 records in RAM.
INFO 2026-06-08 08:52:58 MarkDuplicates Read 142,000,000 records. Elapsed time: 00:04:20s. Time for last 1,000,000: 1s. Last read position: chr4:23,119,573
INFO 2026-06-08 08:52:58 MarkDuplicates Tracking 1200662 as yet unmatched pairs. 27371 records in RAM.
INFO 2026-06-08 08:52:59 MarkDuplicates Read 143,000,000 records. Elapsed time: 00:04:21s. Time for last 1,000,000: 1s. Last read position: chr4:40,816,181
INFO 2026-06-08 08:52:59 MarkDuplicates Tracking 1198270 as yet unmatched pairs. 24968 records in RAM.
INFO 2026-06-08 08:53:02 MarkDuplicates Read 144,000,000 records. Elapsed time: 00:04:24s. Time for last 1,000,000: 2s. Last read position: chr4:55,098,732
INFO 2026-06-08 08:53:02 MarkDuplicates Tracking 1195956 as yet unmatched pairs. 22645 records in RAM.
INFO 2026-06-08 08:53:04 MarkDuplicates Read 145,000,000 records. Elapsed time: 00:04:26s. Time for last 1,000,000: 1s. Last read position: chr4:70,839,562
INFO 2026-06-08 08:53:04 MarkDuplicates Tracking 1193583 as yet unmatched pairs. 20267 records in RAM.
INFO 2026-06-08 08:53:06 MarkDuplicates Read 146,000,000 records. Elapsed time: 00:04:28s. Time for last 1,000,000: 1s. Last read position: chr4:73,998,531
INFO 2026-06-08 08:53:06 MarkDuplicates Tracking 1190776 as yet unmatched pairs. 17460 records in RAM.
INFO 2026-06-08 08:53:08 MarkDuplicates Read 147,000,000 records. Elapsed time: 00:04:30s. Time for last 1,000,000: 1s. Last read position: chr4:77,728,902
INFO 2026-06-08 08:53:08 MarkDuplicates Tracking 1188484 as yet unmatched pairs. 15165 records in RAM.
INFO 2026-06-08 08:53:09 MarkDuplicates Read 148,000,000 records. Elapsed time: 00:04:31s. Time for last 1,000,000: 1s. Last read position: chr4:87,494,143
INFO 2026-06-08 08:53:09 MarkDuplicates Tracking 1186202 as yet unmatched pairs. 12881 records in RAM.
INFO 2026-06-08 08:53:11 MarkDuplicates Read 149,000,000 records. Elapsed time: 00:04:33s. Time for last 1,000,000: 1s. Last read position: chr4:106,232,976
INFO 2026-06-08 08:53:11 MarkDuplicates Tracking 1183876 as yet unmatched pairs. 10547 records in RAM.
INFO 2026-06-08 08:53:12 MarkDuplicates Read 150,000,000 records. Elapsed time: 00:04:34s. Time for last 1,000,000: 1s. Last read position: chr4:124,669,811
INFO 2026-06-08 08:53:12 MarkDuplicates Tracking 1181612 as yet unmatched pairs. 8281 records in RAM.
INFO 2026-06-08 08:53:14 MarkDuplicates Read 151,000,000 records. Elapsed time: 00:04:36s. Time for last 1,000,000: 1s. Last read position: chr4:148,023,392
INFO 2026-06-08 08:53:14 MarkDuplicates Tracking 1179159 as yet unmatched pairs. 5819 records in RAM.
INFO 2026-06-08 08:53:16 MarkDuplicates Read 152,000,000 records. Elapsed time: 00:04:38s. Time for last 1,000,000: 1s. Last read position: chr4:163,166,475
INFO 2026-06-08 08:53:16 MarkDuplicates Tracking 1177127 as yet unmatched pairs. 3782 records in RAM.
INFO 2026-06-08 08:53:17 MarkDuplicates Read 153,000,000 records. Elapsed time: 00:04:39s. Time for last 1,000,000: 1s. Last read position: chr4:186,597,695
INFO 2026-06-08 08:53:17 MarkDuplicates Tracking 1175156 as yet unmatched pairs. 1789 records in RAM.
INFO 2026-06-08 08:53:19 MarkDuplicates Read 154,000,000 records. Elapsed time: 00:04:41s. Time for last 1,000,000: 2s. Last read position: chr5:748,126
INFO 2026-06-08 08:53:19 MarkDuplicates Tracking 1172038 as yet unmatched pairs. 58695 records in RAM.
INFO 2026-06-08 08:53:21 MarkDuplicates Read 155,000,000 records. Elapsed time: 00:04:43s. Time for last 1,000,000: 1s. Last read position: chr5:10,258,463
INFO 2026-06-08 08:53:21 MarkDuplicates Tracking 1169804 as yet unmatched pairs. 56455 records in RAM.
INFO 2026-06-08 08:53:23 MarkDuplicates Read 156,000,000 records. Elapsed time: 00:04:45s. Time for last 1,000,000: 1s. Last read position: chr5:14,498,516
INFO 2026-06-08 08:53:23 MarkDuplicates Tracking 1168059 as yet unmatched pairs. 54709 records in RAM.
INFO 2026-06-08 08:53:24 MarkDuplicates Read 157,000,000 records. Elapsed time: 00:04:46s. Time for last 1,000,000: 1s. Last read position: chr5:34,937,460
INFO 2026-06-08 08:53:24 MarkDuplicates Tracking 1164759 as yet unmatched pairs. 51407 records in RAM.
INFO 2026-06-08 08:53:26 MarkDuplicates Read 158,000,000 records. Elapsed time: 00:04:48s. Time for last 1,000,000: 1s. Last read position: chr5:43,294,688
INFO 2026-06-08 08:53:26 MarkDuplicates Tracking 1162947 as yet unmatched pairs. 49591 records in RAM.
INFO 2026-06-08 08:53:28 MarkDuplicates Read 159,000,000 records. Elapsed time: 00:04:50s. Time for last 1,000,000: 1s. Last read position: chr5:65,720,740
INFO 2026-06-08 08:53:28 MarkDuplicates Tracking 1160188 as yet unmatched pairs. 46792 records in RAM.
INFO 2026-06-08 08:53:29 MarkDuplicates Read 160,000,000 records. Elapsed time: 00:04:51s. Time for last 1,000,000: 1s. Last read position: chr5:73,505,292
INFO 2026-06-08 08:53:29 MarkDuplicates Tracking 1158535 as yet unmatched pairs. 45128 records in RAM.
INFO 2026-06-08 08:53:31 MarkDuplicates Read 161,000,000 records. Elapsed time: 00:04:53s. Time for last 1,000,000: 1s. Last read position: chr5:83,519,581
INFO 2026-06-08 08:53:31 MarkDuplicates Tracking 1156705 as yet unmatched pairs. 43293 records in RAM.
INFO 2026-06-08 08:53:32 MarkDuplicates Read 162,000,000 records. Elapsed time: 00:04:54s. Time for last 1,000,000: 1s. Last read position: chr5:107,861,744
INFO 2026-06-08 08:53:32 MarkDuplicates Tracking 1154005 as yet unmatched pairs. 40581 records in RAM.
INFO 2026-06-08 08:53:34 MarkDuplicates Read 163,000,000 records. Elapsed time: 00:04:56s. Time for last 1,000,000: 1s. Last read position: chr5:128,148,771
INFO 2026-06-08 08:53:34 MarkDuplicates Tracking 1151851 as yet unmatched pairs. 38423 records in RAM.
INFO 2026-06-08 08:53:36 MarkDuplicates Read 164,000,000 records. Elapsed time: 00:04:58s. Time for last 1,000,000: 1s. Last read position: chr5:134,573,685
INFO 2026-06-08 08:53:36 MarkDuplicates Tracking 1149320 as yet unmatched pairs. 35879 records in RAM.
INFO 2026-06-08 08:53:38 MarkDuplicates Read 165,000,000 records. Elapsed time: 00:05:00s. Time for last 1,000,000: 1s. Last read position: chr5:138,466,824
INFO 2026-06-08 08:53:38 MarkDuplicates Tracking 1146749 as yet unmatched pairs. 33308 records in RAM.
INFO 2026-06-08 08:53:40 MarkDuplicates Read 166,000,000 records. Elapsed time: 00:05:02s. Time for last 1,000,000: 2s. Last read position: chr5:140,529,190
INFO 2026-06-08 08:53:40 MarkDuplicates Tracking 1145015 as yet unmatched pairs. 31527 records in RAM.
INFO 2026-06-08 08:53:42 MarkDuplicates Read 167,000,000 records. Elapsed time: 00:05:04s. Time for last 1,000,000: 1s. Last read position: chr5:141,634,842
INFO 2026-06-08 08:53:42 MarkDuplicates Tracking 1142161 as yet unmatched pairs. 28658 records in RAM.
INFO 2026-06-08 08:53:44 MarkDuplicates Read 168,000,000 records. Elapsed time: 00:05:06s. Time for last 1,000,000: 1s. Last read position: chr5:146,459,102
INFO 2026-06-08 08:53:44 MarkDuplicates Tracking 1141286 as yet unmatched pairs. 27774 records in RAM.
INFO 2026-06-08 08:53:45 MarkDuplicates Read 169,000,000 records. Elapsed time: 00:05:07s. Time for last 1,000,000: 1s. Last read position: chr5:150,132,754
INFO 2026-06-08 08:53:45 MarkDuplicates Tracking 1139294 as yet unmatched pairs. 25777 records in RAM.
INFO 2026-06-08 08:53:47 MarkDuplicates Read 170,000,000 records. Elapsed time: 00:05:09s. Time for last 1,000,000: 1s. Last read position: chr5:150,405,140
INFO 2026-06-08 08:53:47 MarkDuplicates Tracking 1165594 as yet unmatched pairs. 52066 records in RAM.
INFO 2026-06-08 08:53:49 MarkDuplicates Read 171,000,000 records. Elapsed time: 00:05:11s. Time for last 1,000,000: 1s. Last read position: chr5:151,028,033
INFO 2026-06-08 08:53:49 MarkDuplicates Tracking 1132579 as yet unmatched pairs. 19047 records in RAM.
INFO 2026-06-08 08:53:50 MarkDuplicates Read 172,000,000 records. Elapsed time: 00:05:12s. Time for last 1,000,000: 1s. Last read position: chr5:157,086,107
INFO 2026-06-08 08:53:50 MarkDuplicates Tracking 1130052 as yet unmatched pairs. 16517 records in RAM.
INFO 2026-06-08 08:53:52 MarkDuplicates Read 173,000,000 records. Elapsed time: 00:05:14s. Time for last 1,000,000: 1s. Last read position: chr5:171,387,878
INFO 2026-06-08 08:53:52 MarkDuplicates Tracking 1132542 as yet unmatched pairs. 18995 records in RAM.
INFO 2026-06-08 08:53:54 MarkDuplicates Read 174,000,000 records. Elapsed time: 00:05:16s. Time for last 1,000,000: 1s. Last read position: chr5:172,983,910
INFO 2026-06-08 08:53:54 MarkDuplicates Tracking 1127001 as yet unmatched pairs. 13452 records in RAM.
INFO 2026-06-08 08:53:56 MarkDuplicates Read 175,000,000 records. Elapsed time: 00:05:18s. Time for last 1,000,000: 1s. Last read position: chr5:177,332,148
INFO 2026-06-08 08:53:56 MarkDuplicates Tracking 1125260 as yet unmatched pairs. 11703 records in RAM.
INFO 2026-06-08 08:53:57 MarkDuplicates Read 176,000,000 records. Elapsed time: 00:05:19s. Time for last 1,000,000: 1s. Last read position: chr5:178,215,328
INFO 2026-06-08 08:53:57 MarkDuplicates Tracking 1120537 as yet unmatched pairs. 6978 records in RAM.
INFO 2026-06-08 08:53:59 MarkDuplicates Read 177,000,000 records. Elapsed time: 00:05:21s. Time for last 1,000,000: 1s. Last read position: chr5:179,820,971
INFO 2026-06-08 08:53:59 MarkDuplicates Tracking 1129432 as yet unmatched pairs. 15871 records in RAM.
INFO 2026-06-08 08:54:01 MarkDuplicates Read 178,000,000 records. Elapsed time: 00:05:23s. Time for last 1,000,000: 1s. Last read position: chr5:180,791,601
INFO 2026-06-08 08:54:01 MarkDuplicates Tracking 1116030 as yet unmatched pairs. 2455 records in RAM.
INFO 2026-06-08 08:54:04 MarkDuplicates Read 179,000,000 records. Elapsed time: 00:05:26s. Time for last 1,000,000: 2s. Last read position: chr6:2,833,844
INFO 2026-06-08 08:54:04 MarkDuplicates Tracking 1113507 as yet unmatched pairs. 70384 records in RAM.
INFO 2026-06-08 08:54:05 MarkDuplicates Read 180,000,000 records. Elapsed time: 00:05:27s. Time for last 1,000,000: 1s. Last read position: chr6:7,248,820
INFO 2026-06-08 08:54:05 MarkDuplicates Tracking 1112286 as yet unmatched pairs. 69154 records in RAM.
INFO 2026-06-08 08:54:07 MarkDuplicates Read 181,000,000 records. Elapsed time: 00:05:29s. Time for last 1,000,000: 1s. Last read position: chr6:15,627,423
INFO 2026-06-08 08:54:07 MarkDuplicates Tracking 1107806 as yet unmatched pairs. 64659 records in RAM.
INFO 2026-06-08 08:54:08 MarkDuplicates Read 182,000,000 records. Elapsed time: 00:05:31s. Time for last 1,000,000: 1s. Last read position: chr6:26,123,498
INFO 2026-06-08 08:54:08 MarkDuplicates Tracking 1106310 as yet unmatched pairs. 63161 records in RAM.
INFO 2026-06-08 08:54:10 MarkDuplicates Read 183,000,000 records. Elapsed time: 00:05:32s. Time for last 1,000,000: 1s. Last read position: chr6:27,146,539
INFO 2026-06-08 08:54:10 MarkDuplicates Tracking 1104785 as yet unmatched pairs. 61631 records in RAM.
INFO 2026-06-08 08:54:12 MarkDuplicates Read 184,000,000 records. Elapsed time: 00:05:34s. Time for last 1,000,000: 1s. Last read position: chr6:29,942,763
INFO 2026-06-08 08:54:12 MarkDuplicates Tracking 1105576 as yet unmatched pairs. 62416 records in RAM.
INFO 2026-06-08 08:54:13 MarkDuplicates Read 185,000,000 records. Elapsed time: 00:05:35s. Time for last 1,000,000: 1s. Last read position: chr6:30,705,765
INFO 2026-06-08 08:54:13 MarkDuplicates Tracking 1098737 as yet unmatched pairs. 55567 records in RAM.
INFO 2026-06-08 08:54:15 MarkDuplicates Read 186,000,000 records. Elapsed time: 00:05:37s. Time for last 1,000,000: 1s. Last read position: chr6:31,355,343
INFO 2026-06-08 08:54:15 MarkDuplicates Tracking 1099678 as yet unmatched pairs. 56504 records in RAM.
INFO 2026-06-08 08:54:17 MarkDuplicates Read 187,000,000 records. Elapsed time: 00:05:39s. Time for last 1,000,000: 1s. Last read position: chr6:31,644,089
INFO 2026-06-08 08:54:17 MarkDuplicates Tracking 1095984 as yet unmatched pairs. 52803 records in RAM.
INFO 2026-06-08 08:54:18 MarkDuplicates Read 188,000,000 records. Elapsed time: 00:05:40s. Time for last 1,000,000: 1s. Last read position: chr6:31,828,320
INFO 2026-06-08 08:54:18 MarkDuplicates Tracking 1094033 as yet unmatched pairs. 50836 records in RAM.
INFO 2026-06-08 08:54:20 MarkDuplicates Read 189,000,000 records. Elapsed time: 00:05:42s. Time for last 1,000,000: 1s. Last read position: chr6:31,995,394
INFO 2026-06-08 08:54:20 MarkDuplicates Tracking 1090635 as yet unmatched pairs. 47435 records in RAM.
INFO 2026-06-08 08:54:22 MarkDuplicates Read 190,000,000 records. Elapsed time: 00:05:44s. Time for last 1,000,000: 1s. Last read position: chr6:32,443,341
INFO 2026-06-08 08:54:22 MarkDuplicates Tracking 1088731 as yet unmatched pairs. 45523 records in RAM.
INFO 2026-06-08 08:54:23 MarkDuplicates Read 191,000,000 records. Elapsed time: 00:05:46s. Time for last 1,000,000: 1s. Last read position: chr6:33,201,796
INFO 2026-06-08 08:54:23 MarkDuplicates Tracking 1086140 as yet unmatched pairs. 42929 records in RAM.
INFO 2026-06-08 08:54:26 MarkDuplicates Read 192,000,000 records. Elapsed time: 00:05:48s. Time for last 1,000,000: 2s. Last read position: chr6:33,448,808
INFO 2026-06-08 08:54:26 MarkDuplicates Tracking 1082937 as yet unmatched pairs. 39723 records in RAM.
INFO 2026-06-08 08:54:27 MarkDuplicates Read 193,000,000 records. Elapsed time: 00:05:49s. Time for last 1,000,000: 1s. Last read position: chr6:35,470,588
INFO 2026-06-08 08:54:27 MarkDuplicates Tracking 1081100 as yet unmatched pairs. 37871 records in RAM.
INFO 2026-06-08 08:54:29 MarkDuplicates Read 194,000,000 records. Elapsed time: 00:05:51s. Time for last 1,000,000: 2s. Last read position: chr6:41,282,580
INFO 2026-06-08 08:54:29 MarkDuplicates Tracking 1077702 as yet unmatched pairs. 34467 records in RAM.
INFO 2026-06-08 08:54:31 MarkDuplicates Read 195,000,000 records. Elapsed time: 00:05:53s. Time for last 1,000,000: 1s. Last read position: chr6:43,027,107
INFO 2026-06-08 08:54:31 MarkDuplicates Tracking 1075109 as yet unmatched pairs. 31873 records in RAM.
INFO 2026-06-08 08:54:33 MarkDuplicates Read 196,000,000 records. Elapsed time: 00:05:55s. Time for last 1,000,000: 1s. Last read position: chr6:44,148,831
INFO 2026-06-08 08:54:33 MarkDuplicates Tracking 1072562 as yet unmatched pairs. 29325 records in RAM.
INFO 2026-06-08 08:54:34 MarkDuplicates Read 197,000,000 records. Elapsed time: 00:05:56s. Time for last 1,000,000: 1s. Last read position: chr6:52,985,506
INFO 2026-06-08 08:54:34 MarkDuplicates Tracking 1069902 as yet unmatched pairs. 26660 records in RAM.
INFO 2026-06-08 08:54:36 MarkDuplicates Read 198,000,000 records. Elapsed time: 00:05:58s. Time for last 1,000,000: 1s. Last read position: chr6:75,091,504
INFO 2026-06-08 08:54:36 MarkDuplicates Tracking 1069460 as yet unmatched pairs. 26194 records in RAM.
INFO 2026-06-08 08:54:38 MarkDuplicates Read 199,000,000 records. Elapsed time: 00:06:00s. Time for last 1,000,000: 1s. Last read position: chr6:83,430,873
INFO 2026-06-08 08:54:38 MarkDuplicates Tracking 1065720 as yet unmatched pairs. 22446 records in RAM.
INFO 2026-06-08 08:54:39 MarkDuplicates Read 200,000,000 records. Elapsed time: 00:06:01s. Time for last 1,000,000: 1s. Last read position: chr6:99,410,904
INFO 2026-06-08 08:54:39 MarkDuplicates Tracking 1063946 as yet unmatched pairs. 20666 records in RAM.
INFO 2026-06-08 08:54:41 MarkDuplicates Read 201,000,000 records. Elapsed time: 00:06:03s. Time for last 1,000,000: 1s. Last read position: chr6:109,465,600
INFO 2026-06-08 08:54:41 MarkDuplicates Tracking 1060955 as yet unmatched pairs. 17672 records in RAM.
INFO 2026-06-08 08:54:43 MarkDuplicates Read 202,000,000 records. Elapsed time: 00:06:05s. Time for last 1,000,000: 1s. Last read position: chr6:118,961,875
INFO 2026-06-08 08:54:43 MarkDuplicates Tracking 1058377 as yet unmatched pairs. 15089 records in RAM.
INFO 2026-06-08 08:54:44 MarkDuplicates Read 203,000,000 records. Elapsed time: 00:06:06s. Time for last 1,000,000: 1s. Last read position: chr6:136,276,467
INFO 2026-06-08 08:54:44 MarkDuplicates Tracking 1056331 as yet unmatched pairs. 13030 records in RAM.
INFO 2026-06-08 08:54:46 MarkDuplicates Read 204,000,000 records. Elapsed time: 00:06:08s. Time for last 1,000,000: 1s. Last read position: chr6:144,424,053
INFO 2026-06-08 08:54:46 MarkDuplicates Tracking 1054499 as yet unmatched pairs. 11198 records in RAM.
INFO 2026-06-08 08:54:48 MarkDuplicates Read 205,000,000 records. Elapsed time: 00:06:10s. Time for last 1,000,000: 1s. Last read position: chr6:151,352,106
INFO 2026-06-08 08:54:48 MarkDuplicates Tracking 1051928 as yet unmatched pairs. 8627 records in RAM.
INFO 2026-06-08 08:54:49 MarkDuplicates Read 206,000,000 records. Elapsed time: 00:06:11s. Time for last 1,000,000: 1s. Last read position: chr6:158,766,826
INFO 2026-06-08 08:54:49 MarkDuplicates Tracking 1051274 as yet unmatched pairs. 7970 records in RAM.
INFO 2026-06-08 08:54:51 MarkDuplicates Read 207,000,000 records. Elapsed time: 00:06:13s. Time for last 1,000,000: 2s. Last read position: chr6:159,783,947
INFO 2026-06-08 08:54:51 MarkDuplicates Tracking 1047077 as yet unmatched pairs. 3770 records in RAM.
INFO 2026-06-08 08:54:53 MarkDuplicates Read 208,000,000 records. Elapsed time: 00:06:15s. Time for last 1,000,000: 1s. Last read position: chr6:169,250,730
INFO 2026-06-08 08:54:53 MarkDuplicates Tracking 1044610 as yet unmatched pairs. 1299 records in RAM.
INFO 2026-06-08 08:54:55 MarkDuplicates Read 209,000,000 records. Elapsed time: 00:06:17s. Time for last 1,000,000: 2s. Last read position: chr7:1,444,981
INFO 2026-06-08 08:54:55 MarkDuplicates Tracking 1043555 as yet unmatched pairs. 69906 records in RAM.
INFO 2026-06-08 08:54:58 MarkDuplicates Read 210,000,000 records. Elapsed time: 00:06:20s. Time for last 1,000,000: 2s. Last read position: chr7:2,543,218
INFO 2026-06-08 08:54:58 MarkDuplicates Tracking 1038948 as yet unmatched pairs. 65283 records in RAM.
INFO 2026-06-08 08:55:00 MarkDuplicates Read 211,000,000 records. Elapsed time: 00:06:22s. Time for last 1,000,000: 1s. Last read position: chr7:5,313,607
INFO 2026-06-08 08:55:00 MarkDuplicates Tracking 1038030 as yet unmatched pairs. 64352 records in RAM.
INFO 2026-06-08 08:55:01 MarkDuplicates Read 212,000,000 records. Elapsed time: 00:06:23s. Time for last 1,000,000: 1s. Last read position: chr7:5,481,670
INFO 2026-06-08 08:55:01 MarkDuplicates Tracking 1032017 as yet unmatched pairs. 58337 records in RAM.
INFO 2026-06-08 08:55:03 MarkDuplicates Read 213,000,000 records. Elapsed time: 00:06:25s. Time for last 1,000,000: 1s. Last read position: chr7:5,528,616
INFO 2026-06-08 08:55:03 MarkDuplicates Tracking 1038441 as yet unmatched pairs. 64751 records in RAM.
INFO 2026-06-08 08:55:05 MarkDuplicates Read 214,000,000 records. Elapsed time: 00:06:27s. Time for last 1,000,000: 1s. Last read position: chr7:6,330,501
INFO 2026-06-08 08:55:05 MarkDuplicates Tracking 1027169 as yet unmatched pairs. 53472 records in RAM.
INFO 2026-06-08 08:55:06 MarkDuplicates Read 215,000,000 records. Elapsed time: 00:06:28s. Time for last 1,000,000: 1s. Last read position: chr7:16,801,320
INFO 2026-06-08 08:55:06 MarkDuplicates Tracking 1027577 as yet unmatched pairs. 53876 records in RAM.
INFO 2026-06-08 08:55:08 MarkDuplicates Read 216,000,000 records. Elapsed time: 00:06:30s. Time for last 1,000,000: 1s. Last read position: chr7:30,055,312
INFO 2026-06-08 08:55:08 MarkDuplicates Tracking 1022512 as yet unmatched pairs. 48804 records in RAM.
INFO 2026-06-08 08:55:10 MarkDuplicates Read 217,000,000 records. Elapsed time: 00:06:32s. Time for last 1,000,000: 1s. Last read position: chr7:44,062,740
INFO 2026-06-08 08:55:10 MarkDuplicates Tracking 1020411 as yet unmatched pairs. 46695 records in RAM.
INFO 2026-06-08 08:55:11 MarkDuplicates Read 218,000,000 records. Elapsed time: 00:06:33s. Time for last 1,000,000: 1s. Last read position: chr7:44,834,391
INFO 2026-06-08 08:55:11 MarkDuplicates Tracking 1018397 as yet unmatched pairs. 44679 records in RAM.
INFO 2026-06-08 08:55:13 MarkDuplicates Read 219,000,000 records. Elapsed time: 00:06:35s. Time for last 1,000,000: 1s. Last read position: chr7:56,104,408
INFO 2026-06-08 08:55:13 MarkDuplicates Tracking 1015576 as yet unmatched pairs. 41840 records in RAM.
INFO 2026-06-08 08:55:14 MarkDuplicates Read 220,000,000 records. Elapsed time: 00:06:36s. Time for last 1,000,000: 1s. Last read position: chr7:73,050,442
INFO 2026-06-08 08:55:14 MarkDuplicates Tracking 1012873 as yet unmatched pairs. 39131 records in RAM.
INFO 2026-06-08 08:55:16 MarkDuplicates Read 221,000,000 records. Elapsed time: 00:06:38s. Time for last 1,000,000: 1s. Last read position: chr7:74,042,684
INFO 2026-06-08 08:55:16 MarkDuplicates Tracking 1011430 as yet unmatched pairs. 37681 records in RAM.
INFO 2026-06-08 08:55:17 MarkDuplicates Read 222,000,000 records. Elapsed time: 00:06:40s. Time for last 1,000,000: 1s. Last read position: chr7:75,359,359
INFO 2026-06-08 08:55:17 MarkDuplicates Tracking 1008814 as yet unmatched pairs. 35041 records in RAM.
INFO 2026-06-08 08:55:19 MarkDuplicates Read 223,000,000 records. Elapsed time: 00:06:41s. Time for last 1,000,000: 1s. Last read position: chr7:77,060,524
INFO 2026-06-08 08:55:19 MarkDuplicates Tracking 1006697 as yet unmatched pairs. 32924 records in RAM.
INFO 2026-06-08 08:55:21 MarkDuplicates Read 224,000,000 records. Elapsed time: 00:06:43s. Time for last 1,000,000: 1s. Last read position: chr7:93,134,068
INFO 2026-06-08 08:55:21 MarkDuplicates Tracking 1004528 as yet unmatched pairs. 30754 records in RAM.
INFO 2026-06-08 08:55:23 MarkDuplicates Read 225,000,000 records. Elapsed time: 00:06:45s. Time for last 1,000,000: 2s. Last read position: chr7:98,224,846
INFO 2026-06-08 08:55:23 MarkDuplicates Tracking 1002115 as yet unmatched pairs. 28332 records in RAM.
INFO 2026-06-08 08:55:25 MarkDuplicates Read 226,000,000 records. Elapsed time: 00:06:47s. Time for last 1,000,000: 1s. Last read position: chr7:99,968,374
INFO 2026-06-08 08:55:25 MarkDuplicates Tracking 999329 as yet unmatched pairs. 25537 records in RAM.
INFO 2026-06-08 08:55:27 MarkDuplicates Read 227,000,000 records. Elapsed time: 00:06:49s. Time for last 1,000,000: 1s. Last read position: chr7:100,606,576
INFO 2026-06-08 08:55:27 MarkDuplicates Tracking 997514 as yet unmatched pairs. 23714 records in RAM.
INFO 2026-06-08 08:55:28 MarkDuplicates Read 228,000,000 records. Elapsed time: 00:06:50s. Time for last 1,000,000: 1s. Last read position: chr7:100,955,787
INFO 2026-06-08 08:55:28 MarkDuplicates Tracking 995311 as yet unmatched pairs. 21505 records in RAM.
INFO 2026-06-08 08:55:30 MarkDuplicates Read 229,000,000 records. Elapsed time: 00:06:52s. Time for last 1,000,000: 1s. Last read position: chr7:102,274,287
INFO 2026-06-08 08:55:30 MarkDuplicates Tracking 992362 as yet unmatched pairs. 18535 records in RAM.
INFO 2026-06-08 08:55:31 MarkDuplicates Read 230,000,000 records. Elapsed time: 00:06:53s. Time for last 1,000,000: 1s. Last read position: chr7:105,111,988
INFO 2026-06-08 08:55:31 MarkDuplicates Tracking 990916 as yet unmatched pairs. 17076 records in RAM.
INFO 2026-06-08 08:55:33 MarkDuplicates Read 231,000,000 records. Elapsed time: 00:06:55s. Time for last 1,000,000: 1s. Last read position: chr7:116,862,623
INFO 2026-06-08 08:55:33 MarkDuplicates Tracking 989268 as yet unmatched pairs. 15426 records in RAM.
INFO 2026-06-08 08:55:34 MarkDuplicates Read 232,000,000 records. Elapsed time: 00:06:57s. Time for last 1,000,000: 1s. Last read position: chr7:128,986,783
INFO 2026-06-08 08:55:34 MarkDuplicates Tracking 986296 as yet unmatched pairs. 12451 records in RAM.
INFO 2026-06-08 08:55:36 MarkDuplicates Read 233,000,000 records. Elapsed time: 00:06:58s. Time for last 1,000,000: 1s. Last read position: chr7:138,001,625
INFO 2026-06-08 08:55:36 MarkDuplicates Tracking 986451 as yet unmatched pairs. 12592 records in RAM.
INFO 2026-06-08 08:55:38 MarkDuplicates Read 234,000,000 records. Elapsed time: 00:07:00s. Time for last 1,000,000: 1s. Last read position: chr7:142,801,412
INFO 2026-06-08 08:55:38 MarkDuplicates Tracking 982302 as yet unmatched pairs. 8443 records in RAM.
INFO 2026-06-08 08:55:39 MarkDuplicates Read 235,000,000 records. Elapsed time: 00:07:01s. Time for last 1,000,000: 1s. Last read position: chr7:149,862,291
INFO 2026-06-08 08:55:39 MarkDuplicates Tracking 978924 as yet unmatched pairs. 5063 records in RAM.
INFO 2026-06-08 08:55:41 MarkDuplicates Read 236,000,000 records. Elapsed time: 00:07:03s. Time for last 1,000,000: 1s. Last read position: chr7:151,238,041
INFO 2026-06-08 08:55:41 MarkDuplicates Tracking 976273 as yet unmatched pairs. 2399 records in RAM.
INFO 2026-06-08 08:55:42 MarkDuplicates Read 237,000,000 records. Elapsed time: 00:07:05s. Time for last 1,000,000: 1s. Last read position: chr8:7,771,214
INFO 2026-06-08 08:55:42 MarkDuplicates Tracking 973510 as yet unmatched pairs. 48957 records in RAM.
INFO 2026-06-08 08:55:44 MarkDuplicates Read 238,000,000 records. Elapsed time: 00:07:06s. Time for last 1,000,000: 1s. Last read position: chr8:20,210,621
INFO 2026-06-08 08:55:44 MarkDuplicates Tracking 971318 as yet unmatched pairs. 46757 records in RAM.
INFO 2026-06-08 08:55:46 MarkDuplicates Read 239,000,000 records. Elapsed time: 00:07:08s. Time for last 1,000,000: 1s. Last read position: chr8:23,144,570
INFO 2026-06-08 08:55:46 MarkDuplicates Tracking 968298 as yet unmatched pairs. 43733 records in RAM.
INFO 2026-06-08 08:55:47 MarkDuplicates Read 240,000,000 records. Elapsed time: 00:07:09s. Time for last 1,000,000: 1s. Last read position: chr8:30,063,901
INFO 2026-06-08 08:55:47 MarkDuplicates Tracking 966325 as yet unmatched pairs. 41756 records in RAM.
INFO 2026-06-08 08:55:49 MarkDuplicates Read 241,000,000 records. Elapsed time: 00:07:11s. Time for last 1,000,000: 1s. Last read position: chr8:38,329,436
INFO 2026-06-08 08:55:49 MarkDuplicates Tracking 964495 as yet unmatched pairs. 39925 records in RAM.
INFO 2026-06-08 08:55:51 MarkDuplicates Read 242,000,000 records. Elapsed time: 00:07:13s. Time for last 1,000,000: 2s. Last read position: chr8:42,180,622
INFO 2026-06-08 08:55:51 MarkDuplicates Tracking 960989 as yet unmatched pairs. 36419 records in RAM.
INFO 2026-06-08 08:55:53 MarkDuplicates Read 243,000,000 records. Elapsed time: 00:07:15s. Time for last 1,000,000: 1s. Last read position: chr8:47,962,178
INFO 2026-06-08 08:55:53 MarkDuplicates Tracking 959031 as yet unmatched pairs. 34457 records in RAM.
INFO 2026-06-08 08:55:55 MarkDuplicates Read 244,000,000 records. Elapsed time: 00:07:17s. Time for last 1,000,000: 1s. Last read position: chr8:63,172,752
INFO 2026-06-08 08:55:55 MarkDuplicates Tracking 956770 as yet unmatched pairs. 32164 records in RAM.
INFO 2026-06-08 08:55:57 MarkDuplicates Read 245,000,000 records. Elapsed time: 00:07:19s. Time for last 1,000,000: 2s. Last read position: chr8:73,291,226
INFO 2026-06-08 08:55:57 MarkDuplicates Tracking 955309 as yet unmatched pairs. 30703 records in RAM.
INFO 2026-06-08 08:55:59 MarkDuplicates Read 246,000,000 records. Elapsed time: 00:07:21s. Time for last 1,000,000: 1s. Last read position: chr8:91,078,399
INFO 2026-06-08 08:55:59 MarkDuplicates Tracking 952049 as yet unmatched pairs. 27431 records in RAM.
INFO 2026-06-08 08:56:00 MarkDuplicates Read 247,000,000 records. Elapsed time: 00:07:23s. Time for last 1,000,000: 1s. Last read position: chr8:100,287,738
INFO 2026-06-08 08:56:00 MarkDuplicates Tracking 950079 as yet unmatched pairs. 25454 records in RAM.
INFO 2026-06-08 08:56:02 MarkDuplicates Read 248,000,000 records. Elapsed time: 00:07:24s. Time for last 1,000,000: 1s. Last read position: chr8:103,435,653
INFO 2026-06-08 08:56:02 MarkDuplicates Tracking 947317 as yet unmatched pairs. 22688 records in RAM.
INFO 2026-06-08 08:57:07 MarkDuplicates Read 249,000,000 records. Elapsed time: 00:08:29s. Time for last 1,000,000: 64s. Last read position: chr8:124,487,071
INFO 2026-06-08 08:57:07 MarkDuplicates Tracking 944895 as yet unmatched pairs. 20264 records in RAM.
INFO 2026-06-08 08:57:08 MarkDuplicates Read 250,000,000 records. Elapsed time: 00:08:30s. Time for last 1,000,000: 1s. Last read position: chr8:140,789,481
INFO 2026-06-08 08:57:08 MarkDuplicates Tracking 942686 as yet unmatched pairs. 18037 records in RAM.
INFO 2026-06-08 08:57:10 MarkDuplicates Read 251,000,000 records. Elapsed time: 00:08:32s. Time for last 1,000,000: 1s. Last read position: chr8:143,693,706
INFO 2026-06-08 08:57:10 MarkDuplicates Tracking 939585 as yet unmatched pairs. 14935 records in RAM.
INFO 2026-06-08 08:57:12 MarkDuplicates Read 252,000,000 records. Elapsed time: 00:08:34s. Time for last 1,000,000: 1s. Last read position: chr8:143,859,827
INFO 2026-06-08 08:57:12 MarkDuplicates Tracking 938280 as yet unmatched pairs. 13629 records in RAM.
INFO 2026-06-08 08:57:13 MarkDuplicates Read 253,000,000 records. Elapsed time: 00:08:35s. Time for last 1,000,000: 1s. Last read position: chr8:143,862,990
INFO 2026-06-08 08:57:13 MarkDuplicates Tracking 938766 as yet unmatched pairs. 14115 records in RAM.
INFO 2026-06-08 08:57:14 MarkDuplicates Read 254,000,000 records. Elapsed time: 00:08:36s. Time for last 1,000,000: 1s. Last read position: chr8:143,866,332
INFO 2026-06-08 08:57:14 MarkDuplicates Tracking 935827 as yet unmatched pairs. 11176 records in RAM.
INFO 2026-06-08 08:57:16 MarkDuplicates Read 255,000,000 records. Elapsed time: 00:08:38s. Time for last 1,000,000: 1s. Last read position: chr8:143,921,286
INFO 2026-06-08 08:57:16 MarkDuplicates Tracking 937796 as yet unmatched pairs. 13142 records in RAM.
INFO 2026-06-08 08:57:18 MarkDuplicates Read 256,000,000 records. Elapsed time: 00:08:40s. Time for last 1,000,000: 1s. Last read position: chr8:143,984,650
INFO 2026-06-08 08:57:18 MarkDuplicates Tracking 930087 as yet unmatched pairs. 5419 records in RAM.
INFO 2026-06-08 08:57:20 MarkDuplicates Read 257,000,000 records. Elapsed time: 00:08:42s. Time for last 1,000,000: 2s. Last read position: chr8:144,412,528
INFO 2026-06-08 08:57:20 MarkDuplicates Tracking 926954 as yet unmatched pairs. 2282 records in RAM.
INFO 2026-06-08 08:57:22 MarkDuplicates Read 258,000,000 records. Elapsed time: 00:08:44s. Time for last 1,000,000: 1s. Last read position: chr9:3,898,747
INFO 2026-06-08 08:57:22 MarkDuplicates Tracking 924073 as yet unmatched pairs. 52423 records in RAM.
INFO 2026-06-08 08:57:24 MarkDuplicates Read 259,000,000 records. Elapsed time: 00:08:46s. Time for last 1,000,000: 1s. Last read position: chr9:21,968,190
INFO 2026-06-08 08:57:24 MarkDuplicates Tracking 922872 as yet unmatched pairs. 51195 records in RAM.
INFO 2026-06-08 08:57:26 MarkDuplicates Read 260,000,000 records. Elapsed time: 00:08:48s. Time for last 1,000,000: 2s. Last read position: chr9:35,057,040
INFO 2026-06-08 08:57:26 MarkDuplicates Tracking 920185 as yet unmatched pairs. 48503 records in RAM.
INFO 2026-06-08 08:57:28 MarkDuplicates Read 261,000,000 records. Elapsed time: 00:08:50s. Time for last 1,000,000: 1s. Last read position: chr9:35,741,805
INFO 2026-06-08 08:57:28 MarkDuplicates Tracking 916849 as yet unmatched pairs. 45167 records in RAM.
INFO 2026-06-08 08:57:30 MarkDuplicates Read 262,000,000 records. Elapsed time: 00:08:52s. Time for last 1,000,000: 2s. Last read position: chr9:71,730,710
INFO 2026-06-08 08:57:30 MarkDuplicates Tracking 914464 as yet unmatched pairs. 42762 records in RAM.
INFO 2026-06-08 08:57:32 MarkDuplicates Read 263,000,000 records. Elapsed time: 00:08:54s. Time for last 1,000,000: 2s. Last read position: chr9:89,350,693
INFO 2026-06-08 08:57:32 MarkDuplicates Tracking 912210 as yet unmatched pairs. 40506 records in RAM.
INFO 2026-06-08 08:57:34 MarkDuplicates Read 264,000,000 records. Elapsed time: 00:08:56s. Time for last 1,000,000: 1s. Last read position: chr9:95,971,991
INFO 2026-06-08 08:57:34 MarkDuplicates Tracking 909655 as yet unmatched pairs. 37947 records in RAM.
INFO 2026-06-08 08:57:36 MarkDuplicates Read 265,000,000 records. Elapsed time: 00:08:58s. Time for last 1,000,000: 1s. Last read position: chr9:104,845,521
INFO 2026-06-08 08:57:36 MarkDuplicates Tracking 907317 as yet unmatched pairs. 35605 records in RAM.
INFO 2026-06-08 08:57:37 MarkDuplicates Read 266,000,000 records. Elapsed time: 00:08:59s. Time for last 1,000,000: 1s. Last read position: chr9:113,591,266
INFO 2026-06-08 08:57:37 MarkDuplicates Tracking 904719 as yet unmatched pairs. 32999 records in RAM.
INFO 2026-06-08 08:57:39 MarkDuplicates Read 267,000,000 records. Elapsed time: 00:09:01s. Time for last 1,000,000: 1s. Last read position: chr9:115,086,636
INFO 2026-06-08 08:57:39 MarkDuplicates Tracking 903715 as yet unmatched pairs. 31989 records in RAM.
INFO 2026-06-08 08:57:40 MarkDuplicates Read 268,000,000 records. Elapsed time: 00:09:03s. Time for last 1,000,000: 1s. Last read position: chr9:123,098,751
INFO 2026-06-08 08:57:40 MarkDuplicates Tracking 900001 as yet unmatched pairs. 28267 records in RAM.
INFO 2026-06-08 08:57:42 MarkDuplicates Read 269,000,000 records. Elapsed time: 00:09:04s. Time for last 1,000,000: 1s. Last read position: chr9:127,663,207
INFO 2026-06-08 08:57:42 MarkDuplicates Tracking 897351 as yet unmatched pairs. 25610 records in RAM.
INFO 2026-06-08 08:57:44 MarkDuplicates Read 270,000,000 records. Elapsed time: 00:09:06s. Time for last 1,000,000: 1s. Last read position: chr9:128,185,766
INFO 2026-06-08 08:57:44 MarkDuplicates Tracking 895594 as yet unmatched pairs. 23838 records in RAM.
INFO 2026-06-08 08:57:46 MarkDuplicates Read 271,000,000 records. Elapsed time: 00:09:08s. Time for last 1,000,000: 2s. Last read position: chr9:128,822,375
INFO 2026-06-08 08:57:46 MarkDuplicates Tracking 892741 as yet unmatched pairs. 20984 records in RAM.
INFO 2026-06-08 08:57:49 MarkDuplicates Read 272,000,000 records. Elapsed time: 00:09:11s. Time for last 1,000,000: 3s. Last read position: chr9:130,854,074
INFO 2026-06-08 08:57:49 MarkDuplicates Tracking 890881 as yet unmatched pairs. 19110 records in RAM.
INFO 2026-06-08 08:57:51 MarkDuplicates Read 273,000,000 records. Elapsed time: 00:09:13s. Time for last 1,000,000: 1s. Last read position: chr9:131,582,604
INFO 2026-06-08 08:57:51 MarkDuplicates Tracking 887422 as yet unmatched pairs. 15644 records in RAM.
INFO 2026-06-08 08:57:53 MarkDuplicates Read 274,000,000 records. Elapsed time: 00:09:15s. Time for last 1,000,000: 1s. Last read position: chr9:133,443,427
INFO 2026-06-08 08:57:53 MarkDuplicates Tracking 884489 as yet unmatched pairs. 12700 records in RAM.
INFO 2026-06-08 08:57:55 MarkDuplicates Read 275,000,000 records. Elapsed time: 00:09:17s. Time for last 1,000,000: 1s. Last read position: chr9:136,011,773
INFO 2026-06-08 08:57:55 MarkDuplicates Tracking 882182 as yet unmatched pairs. 10381 records in RAM.
INFO 2026-06-08 08:57:56 MarkDuplicates Read 276,000,000 records. Elapsed time: 00:09:18s. Time for last 1,000,000: 1s. Last read position: chr9:136,510,794
INFO 2026-06-08 08:57:56 MarkDuplicates Tracking 879605 as yet unmatched pairs. 7796 records in RAM.
INFO 2026-06-08 08:57:58 MarkDuplicates Read 277,000,000 records. Elapsed time: 00:09:20s. Time for last 1,000,000: 1s. Last read position: chr9:137,024,152
INFO 2026-06-08 08:57:58 MarkDuplicates Tracking 876167 as yet unmatched pairs. 4358 records in RAM.
INFO 2026-06-08 08:58:00 MarkDuplicates Read 278,000,000 records. Elapsed time: 00:09:22s. Time for last 1,000,000: 1s. Last read position: chr9:137,574,236
INFO 2026-06-08 08:58:00 MarkDuplicates Tracking 872936 as yet unmatched pairs. 1119 records in RAM.
INFO 2026-06-08 08:58:02 MarkDuplicates Read 279,000,000 records. Elapsed time: 00:09:24s. Time for last 1,000,000: 2s. Last read position: chr10:5,748,025
INFO 2026-06-08 08:58:02 MarkDuplicates Tracking 870653 as yet unmatched pairs. 42484 records in RAM.
INFO 2026-06-08 08:58:05 MarkDuplicates Read 280,000,000 records. Elapsed time: 00:09:27s. Time for last 1,000,000: 2s. Last read position: chr10:15,128,368
INFO 2026-06-08 08:58:05 MarkDuplicates Tracking 867929 as yet unmatched pairs. 39760 records in RAM.
INFO 2026-06-08 08:58:07 MarkDuplicates Read 281,000,000 records. Elapsed time: 00:09:29s. Time for last 1,000,000: 2s. Last read position: chr10:27,119,297
INFO 2026-06-08 08:58:07 MarkDuplicates Tracking 866112 as yet unmatched pairs. 37932 records in RAM.
INFO 2026-06-08 08:58:09 MarkDuplicates Read 282,000,000 records. Elapsed time: 00:09:31s. Time for last 1,000,000: 1s. Last read position: chr10:32,908,470
INFO 2026-06-08 08:58:09 MarkDuplicates Tracking 864692 as yet unmatched pairs. 36509 records in RAM.
INFO 2026-06-08 08:58:10 MarkDuplicates Read 283,000,000 records. Elapsed time: 00:09:32s. Time for last 1,000,000: 1s. Last read position: chr10:45,975,457
INFO 2026-06-08 08:58:10 MarkDuplicates Tracking 861823 as yet unmatched pairs. 33639 records in RAM.
INFO 2026-06-08 08:58:12 MarkDuplicates Read 284,000,000 records. Elapsed time: 00:09:34s. Time for last 1,000,000: 1s. Last read position: chr10:51,074,594
INFO 2026-06-08 08:58:12 MarkDuplicates Tracking 859845 as yet unmatched pairs. 31658 records in RAM.
INFO 2026-06-08 08:58:14 MarkDuplicates Read 285,000,000 records. Elapsed time: 00:09:36s. Time for last 1,000,000: 1s. Last read position: chr10:68,988,830
INFO 2026-06-08 08:58:14 MarkDuplicates Tracking 857063 as yet unmatched pairs. 28874 records in RAM.
INFO 2026-06-08 08:58:15 MarkDuplicates Read 286,000,000 records. Elapsed time: 00:09:37s. Time for last 1,000,000: 1s. Last read position: chr10:72,274,935
INFO 2026-06-08 08:58:15 MarkDuplicates Tracking 856705 as yet unmatched pairs. 28514 records in RAM.
INFO 2026-06-08 08:58:17 MarkDuplicates Read 287,000,000 records. Elapsed time: 00:09:39s. Time for last 1,000,000: 1s. Last read position: chr10:74,109,081
INFO 2026-06-08 08:58:17 MarkDuplicates Tracking 852447 as yet unmatched pairs. 24256 records in RAM.
INFO 2026-06-08 08:58:19 MarkDuplicates Read 288,000,000 records. Elapsed time: 00:09:41s. Time for last 1,000,000: 1s. Last read position: chr10:80,168,978
INFO 2026-06-08 08:58:19 MarkDuplicates Tracking 849965 as yet unmatched pairs. 21773 records in RAM.
INFO 2026-06-08 08:58:21 MarkDuplicates Read 289,000,000 records. Elapsed time: 00:09:43s. Time for last 1,000,000: 1s. Last read position: chr10:89,339,331
INFO 2026-06-08 08:58:21 MarkDuplicates Tracking 847796 as yet unmatched pairs. 19602 records in RAM.
INFO 2026-06-08 08:58:23 MarkDuplicates Read 290,000,000 records. Elapsed time: 00:09:45s. Time for last 1,000,000: 1s. Last read position: chr10:95,868,747
INFO 2026-06-08 08:58:23 MarkDuplicates Tracking 845152 as yet unmatched pairs. 16950 records in RAM.
INFO 2026-06-08 08:58:25 MarkDuplicates Read 291,000,000 records. Elapsed time: 00:09:47s. Time for last 1,000,000: 2s. Last read position: chr10:100,200,008
INFO 2026-06-08 08:58:25 MarkDuplicates Tracking 842637 as yet unmatched pairs. 14435 records in RAM.
INFO 2026-06-08 08:58:27 MarkDuplicates Read 292,000,000 records. Elapsed time: 00:09:49s. Time for last 1,000,000: 2s. Last read position: chr10:102,160,633
INFO 2026-06-08 08:58:27 MarkDuplicates Tracking 840383 as yet unmatched pairs. 12174 records in RAM.
INFO 2026-06-08 08:58:29 MarkDuplicates Read 293,000,000 records. Elapsed time: 00:09:51s. Time for last 1,000,000: 1s. Last read position: chr10:103,892,153
INFO 2026-06-08 08:58:29 MarkDuplicates Tracking 837645 as yet unmatched pairs. 9432 records in RAM.
INFO 2026-06-08 08:58:31 MarkDuplicates Read 294,000,000 records. Elapsed time: 00:09:53s. Time for last 1,000,000: 1s. Last read position: chr10:116,951,918
INFO 2026-06-08 08:58:31 MarkDuplicates Tracking 835683 as yet unmatched pairs. 7458 records in RAM.
INFO 2026-06-08 08:58:33 MarkDuplicates Read 295,000,000 records. Elapsed time: 00:09:55s. Time for last 1,000,000: 1s. Last read position: chr10:122,086,163
INFO 2026-06-08 08:58:33 MarkDuplicates Tracking 832870 as yet unmatched pairs. 4645 records in RAM.
INFO 2026-06-08 08:58:34 MarkDuplicates Read 296,000,000 records. Elapsed time: 00:09:56s. Time for last 1,000,000: 1s. Last read position: chr10:127,447,492
INFO 2026-06-08 08:58:34 MarkDuplicates Tracking 830731 as yet unmatched pairs. 2504 records in RAM.
INFO 2026-06-08 08:58:36 MarkDuplicates Read 297,000,000 records. Elapsed time: 00:09:58s. Time for last 1,000,000: 1s. Last read position: chr10:133,460,128
INFO 2026-06-08 08:58:36 MarkDuplicates Tracking 828297 as yet unmatched pairs. 65 records in RAM.
INFO 2026-06-08 08:58:39 MarkDuplicates Read 298,000,000 records. Elapsed time: 00:10:01s. Time for last 1,000,000: 2s. Last read position: chr11:397,124
INFO 2026-06-08 08:58:39 MarkDuplicates Tracking 827506 as yet unmatched pairs. 126633 records in RAM.
INFO 2026-06-08 08:58:41 MarkDuplicates Read 299,000,000 records. Elapsed time: 00:10:03s. Time for last 1,000,000: 1s. Last read position: chr11:802,031
INFO 2026-06-08 08:58:41 MarkDuplicates Tracking 823139 as yet unmatched pairs. 122253 records in RAM.
INFO 2026-06-08 08:58:42 MarkDuplicates Read 300,000,000 records. Elapsed time: 00:10:05s. Time for last 1,000,000: 1s. Last read position: chr11:1,019,303
INFO 2026-06-08 08:58:42 MarkDuplicates Tracking 821564 as yet unmatched pairs. 120677 records in RAM.
INFO 2026-06-08 08:58:44 MarkDuplicates Read 301,000,000 records. Elapsed time: 00:10:06s. Time for last 1,000,000: 1s. Last read position: chr11:1,180,462
INFO 2026-06-08 08:58:44 MarkDuplicates Tracking 819349 as yet unmatched pairs. 118460 records in RAM.
INFO 2026-06-08 08:58:46 MarkDuplicates Read 302,000,000 records. Elapsed time: 00:10:08s. Time for last 1,000,000: 1s. Last read position: chr11:1,184,551
INFO 2026-06-08 08:58:46 MarkDuplicates Tracking 819342 as yet unmatched pairs. 118453 records in RAM.
INFO 2026-06-08 08:58:48 MarkDuplicates Read 303,000,000 records. Elapsed time: 00:10:10s. Time for last 1,000,000: 2s. Last read position: chr11:1,187,634
INFO 2026-06-08 08:58:48 MarkDuplicates Tracking 818424 as yet unmatched pairs. 117535 records in RAM.
INFO 2026-06-08 08:58:51 MarkDuplicates Read 304,000,000 records. Elapsed time: 00:10:13s. Time for last 1,000,000: 3s. Last read position: chr11:1,191,135
INFO 2026-06-08 08:58:51 MarkDuplicates Tracking 816367 as yet unmatched pairs. 115476 records in RAM.
INFO 2026-06-08 08:58:53 MarkDuplicates Read 305,000,000 records. Elapsed time: 00:10:15s. Time for last 1,000,000: 1s. Last read position: chr11:1,200,485
INFO 2026-06-08 08:58:53 MarkDuplicates Tracking 815924 as yet unmatched pairs. 115032 records in RAM.
INFO 2026-06-08 08:58:55 MarkDuplicates Read 306,000,000 records. Elapsed time: 00:10:17s. Time for last 1,000,000: 1s. Last read position: chr11:1,232,018
INFO 2026-06-08 08:58:55 MarkDuplicates Tracking 817403 as yet unmatched pairs. 116508 records in RAM.
INFO 2026-06-08 08:58:57 MarkDuplicates Read 307,000,000 records. Elapsed time: 00:10:19s. Time for last 1,000,000: 1s. Last read position: chr11:1,240,872
INFO 2026-06-08 08:58:57 MarkDuplicates Tracking 819948 as yet unmatched pairs. 119053 records in RAM.
INFO 2026-06-08 08:58:59 MarkDuplicates Read 308,000,000 records. Elapsed time: 00:10:21s. Time for last 1,000,000: 1s. Last read position: chr11:1,242,526
INFO 2026-06-08 08:58:59 MarkDuplicates Tracking 811836 as yet unmatched pairs. 110941 records in RAM.
INFO 2026-06-08 08:59:00 MarkDuplicates Read 309,000,000 records. Elapsed time: 00:10:22s. Time for last 1,000,000: 1s. Last read position: chr11:1,243,069
INFO 2026-06-08 08:59:00 MarkDuplicates Tracking 806240 as yet unmatched pairs. 105344 records in RAM.
INFO 2026-06-08 08:59:01 MarkDuplicates Read 310,000,000 records. Elapsed time: 00:10:23s. Time for last 1,000,000: 1s. Last read position: chr11:1,243,474
INFO 2026-06-08 08:59:01 MarkDuplicates Tracking 812821 as yet unmatched pairs. 111924 records in RAM.
INFO 2026-06-08 08:59:03 MarkDuplicates Read 311,000,000 records. Elapsed time: 00:10:25s. Time for last 1,000,000: 1s. Last read position: chr11:1,243,781
INFO 2026-06-08 08:59:03 MarkDuplicates Tracking 819810 as yet unmatched pairs. 118913 records in RAM.
INFO 2026-06-08 08:59:04 MarkDuplicates Read 312,000,000 records. Elapsed time: 00:10:26s. Time for last 1,000,000: 1s. Last read position: chr11:1,244,170
INFO 2026-06-08 08:59:04 MarkDuplicates Tracking 815232 as yet unmatched pairs. 114334 records in RAM.
INFO 2026-06-08 08:59:06 MarkDuplicates Read 313,000,000 records. Elapsed time: 00:10:28s. Time for last 1,000,000: 1s. Last read position: chr11:1,244,505
INFO 2026-06-08 08:59:06 MarkDuplicates Tracking 807977 as yet unmatched pairs. 107079 records in RAM.
INFO 2026-06-08 08:59:07 MarkDuplicates Read 314,000,000 records. Elapsed time: 00:10:30s. Time for last 1,000,000: 1s. Last read position: chr11:1,244,964
INFO 2026-06-08 08:59:07 MarkDuplicates Tracking 805938 as yet unmatched pairs. 105040 records in RAM.
INFO 2026-06-08 08:59:09 MarkDuplicates Read 315,000,000 records. Elapsed time: 00:10:31s. Time for last 1,000,000: 1s. Last read position: chr11:1,245,227
INFO 2026-06-08 08:59:09 MarkDuplicates Tracking 807772 as yet unmatched pairs. 106874 records in RAM.
INFO 2026-06-08 08:59:10 MarkDuplicates Read 316,000,000 records. Elapsed time: 00:10:32s. Time for last 1,000,000: 1s. Last read position: chr11:1,245,681
INFO 2026-06-08 08:59:10 MarkDuplicates Tracking 819901 as yet unmatched pairs. 119003 records in RAM.
INFO 2026-06-08 08:59:13 MarkDuplicates Read 317,000,000 records. Elapsed time: 00:10:35s. Time for last 1,000,000: 2s. Last read position: chr11:1,246,540
INFO 2026-06-08 08:59:13 MarkDuplicates Tracking 811997 as yet unmatched pairs. 111099 records in RAM.
INFO 2026-06-08 08:59:14 MarkDuplicates Read 318,000,000 records. Elapsed time: 00:10:36s. Time for last 1,000,000: 1s. Last read position: chr11:1,246,995
INFO 2026-06-08 08:59:14 MarkDuplicates Tracking 809668 as yet unmatched pairs. 108769 records in RAM.
INFO 2026-06-08 08:59:17 MarkDuplicates Read 319,000,000 records. Elapsed time: 00:10:39s. Time for last 1,000,000: 2s. Last read position: chr11:1,247,341
INFO 2026-06-08 08:59:17 MarkDuplicates Tracking 818628 as yet unmatched pairs. 117729 records in RAM.
INFO 2026-06-08 08:59:18 MarkDuplicates Read 320,000,000 records. Elapsed time: 00:10:40s. Time for last 1,000,000: 1s. Last read position: chr11:1,247,836
INFO 2026-06-08 08:59:18 MarkDuplicates Tracking 812364 as yet unmatched pairs. 111464 records in RAM.
INFO 2026-06-08 08:59:19 MarkDuplicates Read 321,000,000 records. Elapsed time: 00:10:41s. Time for last 1,000,000: 1s. Last read position: chr11:1,248,215
INFO 2026-06-08 08:59:19 MarkDuplicates Tracking 802678 as yet unmatched pairs. 101778 records in RAM.
INFO 2026-06-08 08:59:21 MarkDuplicates Read 322,000,000 records. Elapsed time: 00:10:43s. Time for last 1,000,000: 1s. Last read position: chr11:1,248,800
INFO 2026-06-08 08:59:21 MarkDuplicates Tracking 811096 as yet unmatched pairs. 110190 records in RAM.
INFO 2026-06-08 08:59:22 MarkDuplicates Read 323,000,000 records. Elapsed time: 00:10:44s. Time for last 1,000,000: 1s. Last read position: chr11:1,249,078
INFO 2026-06-08 08:59:22 MarkDuplicates Tracking 805453 as yet unmatched pairs. 104545 records in RAM.
INFO 2026-06-08 08:59:24 MarkDuplicates Read 324,000,000 records. Elapsed time: 00:10:46s. Time for last 1,000,000: 1s. Last read position: chr11:1,249,539
INFO 2026-06-08 08:59:24 MarkDuplicates Tracking 799591 as yet unmatched pairs. 98683 records in RAM.
INFO 2026-06-08 08:59:26 MarkDuplicates Read 325,000,000 records. Elapsed time: 00:10:48s. Time for last 1,000,000: 1s. Last read position: chr11:1,250,224
INFO 2026-06-08 08:59:26 MarkDuplicates Tracking 802643 as yet unmatched pairs. 101733 records in RAM.
INFO 2026-06-08 08:59:28 MarkDuplicates Read 326,000,000 records. Elapsed time: 00:10:50s. Time for last 1,000,000: 1s. Last read position: chr11:1,250,818
INFO 2026-06-08 08:59:28 MarkDuplicates Tracking 789822 as yet unmatched pairs. 88912 records in RAM.
INFO 2026-06-08 08:59:31 MarkDuplicates Read 327,000,000 records. Elapsed time: 00:10:53s. Time for last 1,000,000: 3s. Last read position: chr11:1,252,432
INFO 2026-06-08 08:59:31 MarkDuplicates Tracking 793216 as yet unmatched pairs. 92306 records in RAM.
INFO 2026-06-08 08:59:33 MarkDuplicates Read 328,000,000 records. Elapsed time: 00:10:55s. Time for last 1,000,000: 1s. Last read position: chr11:1,259,780
INFO 2026-06-08 08:59:33 MarkDuplicates Tracking 789035 as yet unmatched pairs. 88121 records in RAM.
INFO 2026-06-08 08:59:35 MarkDuplicates Read 329,000,000 records. Elapsed time: 00:10:57s. Time for last 1,000,000: 1s. Last read position: chr11:2,445,366
INFO 2026-06-08 08:59:35 MarkDuplicates Tracking 778097 as yet unmatched pairs. 77183 records in RAM.
INFO 2026-06-08 08:59:37 MarkDuplicates Read 330,000,000 records. Elapsed time: 00:10:59s. Time for last 1,000,000: 1s. Last read position: chr11:6,547,250
INFO 2026-06-08 08:59:37 MarkDuplicates Tracking 774826 as yet unmatched pairs. 73908 records in RAM.
INFO 2026-06-08 08:59:38 MarkDuplicates Read 331,000,000 records. Elapsed time: 00:11:01s. Time for last 1,000,000: 1s. Last read position: chr11:10,272,118
INFO 2026-06-08 08:59:38 MarkDuplicates Tracking 772415 as yet unmatched pairs. 71489 records in RAM.
INFO 2026-06-08 08:59:40 MarkDuplicates Read 332,000,000 records. Elapsed time: 00:11:02s. Time for last 1,000,000: 1s. Last read position: chr11:17,074,421
INFO 2026-06-08 08:59:40 MarkDuplicates Tracking 770467 as yet unmatched pairs. 69535 records in RAM.
INFO 2026-06-08 08:59:42 MarkDuplicates Read 333,000,000 records. Elapsed time: 00:11:04s. Time for last 1,000,000: 1s. Last read position: chr11:34,141,767
INFO 2026-06-08 08:59:42 MarkDuplicates Tracking 768028 as yet unmatched pairs. 67094 records in RAM.
INFO 2026-06-08 08:59:44 MarkDuplicates Read 334,000,000 records. Elapsed time: 00:11:06s. Time for last 1,000,000: 2s. Last read position: chr11:46,367,684
INFO 2026-06-08 08:59:44 MarkDuplicates Tracking 766030 as yet unmatched pairs. 65088 records in RAM.
INFO 2026-06-08 08:59:46 MarkDuplicates Read 335,000,000 records. Elapsed time: 00:11:08s. Time for last 1,000,000: 1s. Last read position: chr11:48,130,582
INFO 2026-06-08 08:59:46 MarkDuplicates Tracking 763010 as yet unmatched pairs. 62067 records in RAM.
INFO 2026-06-08 08:59:48 MarkDuplicates Read 336,000,000 records. Elapsed time: 00:11:10s. Time for last 1,000,000: 1s. Last read position: chr11:57,811,460
INFO 2026-06-08 08:59:48 MarkDuplicates Tracking 762100 as yet unmatched pairs. 61152 records in RAM.
INFO 2026-06-08 08:59:49 MarkDuplicates Read 337,000,000 records. Elapsed time: 00:11:11s. Time for last 1,000,000: 1s. Last read position: chr11:61,132,306
INFO 2026-06-08 08:59:49 MarkDuplicates Tracking 757890 as yet unmatched pairs. 56935 records in RAM.
INFO 2026-06-08 08:59:51 MarkDuplicates Read 338,000,000 records. Elapsed time: 00:11:13s. Time for last 1,000,000: 1s. Last read position: chr11:61,967,465
INFO 2026-06-08 08:59:51 MarkDuplicates Tracking 755222 as yet unmatched pairs. 54249 records in RAM.
INFO 2026-06-08 08:59:53 MarkDuplicates Read 339,000,000 records. Elapsed time: 00:11:15s. Time for last 1,000,000: 1s. Last read position: chr11:62,534,052
INFO 2026-06-08 08:59:53 MarkDuplicates Tracking 754514 as yet unmatched pairs. 53536 records in RAM.
INFO 2026-06-08 08:59:56 MarkDuplicates Read 340,000,000 records. Elapsed time: 00:11:18s. Time for last 1,000,000: 2s. Last read position: chr11:62,775,791
INFO 2026-06-08 08:59:56 MarkDuplicates Tracking 750691 as yet unmatched pairs. 49713 records in RAM.
INFO 2026-06-08 08:59:58 MarkDuplicates Read 341,000,000 records. Elapsed time: 00:11:20s. Time for last 1,000,000: 1s. Last read position: chr11:64,243,851
INFO 2026-06-08 08:59:58 MarkDuplicates Tracking 748233 as yet unmatched pairs. 47245 records in RAM.
INFO 2026-06-08 08:59:59 MarkDuplicates Read 342,000,000 records. Elapsed time: 00:11:21s. Time for last 1,000,000: 1s. Last read position: chr11:64,860,041
INFO 2026-06-08 08:59:59 MarkDuplicates Tracking 745047 as yet unmatched pairs. 44058 records in RAM.
INFO 2026-06-08 09:00:01 MarkDuplicates Read 343,000,000 records. Elapsed time: 00:11:23s. Time for last 1,000,000: 1s. Last read position: chr11:65,526,782
INFO 2026-06-08 09:00:01 MarkDuplicates Tracking 742581 as yet unmatched pairs. 41570 records in RAM.
INFO 2026-06-08 09:00:03 MarkDuplicates Read 344,000,000 records. Elapsed time: 00:11:25s. Time for last 1,000,000: 1s. Last read position: chr11:65,654,578
INFO 2026-06-08 09:00:03 MarkDuplicates Tracking 740816 as yet unmatched pairs. 39800 records in RAM.
INFO 2026-06-08 09:00:05 MarkDuplicates Read 345,000,000 records. Elapsed time: 00:11:27s. Time for last 1,000,000: 2s. Last read position: chr11:66,238,846
INFO 2026-06-08 09:00:05 MarkDuplicates Tracking 736429 as yet unmatched pairs. 35413 records in RAM.
INFO 2026-06-08 09:00:07 MarkDuplicates Read 346,000,000 records. Elapsed time: 00:11:29s. Time for last 1,000,000: 1s. Last read position: chr11:66,701,629
INFO 2026-06-08 09:00:07 MarkDuplicates Tracking 733805 as yet unmatched pairs. 32785 records in RAM.
INFO 2026-06-08 09:00:09 MarkDuplicates Read 347,000,000 records. Elapsed time: 00:11:31s. Time for last 1,000,000: 1s. Last read position: chr11:67,405,134
INFO 2026-06-08 09:00:09 MarkDuplicates Tracking 730788 as yet unmatched pairs. 29767 records in RAM.
INFO 2026-06-08 09:00:11 MarkDuplicates Read 348,000,000 records. Elapsed time: 00:11:33s. Time for last 1,000,000: 2s. Last read position: chr11:68,047,447
INFO 2026-06-08 09:00:11 MarkDuplicates Tracking 728423 as yet unmatched pairs. 27396 records in RAM.
INFO 2026-06-08 09:00:13 MarkDuplicates Read 349,000,000 records. Elapsed time: 00:11:35s. Time for last 1,000,000: 1s. Last read position: chr11:69,641,242
INFO 2026-06-08 09:00:13 MarkDuplicates Tracking 726517 as yet unmatched pairs. 25488 records in RAM.
INFO 2026-06-08 09:00:14 MarkDuplicates Read 350,000,000 records. Elapsed time: 00:11:36s. Time for last 1,000,000: 1s. Last read position: chr11:72,225,082
INFO 2026-06-08 09:00:14 MarkDuplicates Tracking 723137 as yet unmatched pairs. 22094 records in RAM.
INFO 2026-06-08 09:00:16 MarkDuplicates Read 351,000,000 records. Elapsed time: 00:11:38s. Time for last 1,000,000: 1s. Last read position: chr11:74,286,291
INFO 2026-06-08 09:00:16 MarkDuplicates Tracking 719555 as yet unmatched pairs. 18510 records in RAM.
INFO 2026-06-08 09:00:18 MarkDuplicates Read 352,000,000 records. Elapsed time: 00:11:40s. Time for last 1,000,000: 1s. Last read position: chr11:77,590,077
INFO 2026-06-08 09:00:18 MarkDuplicates Tracking 717122 as yet unmatched pairs. 16070 records in RAM.
INFO 2026-06-08 09:00:20 MarkDuplicates Read 353,000,000 records. Elapsed time: 00:11:42s. Time for last 1,000,000: 1s. Last read position: chr11:94,799,646
INFO 2026-06-08 09:00:20 MarkDuplicates Tracking 714903 as yet unmatched pairs. 13850 records in RAM.
INFO 2026-06-08 09:00:21 MarkDuplicates Read 354,000,000 records. Elapsed time: 00:11:43s. Time for last 1,000,000: 1s. Last read position: chr11:105,026,306
INFO 2026-06-08 09:00:21 MarkDuplicates Tracking 712533 as yet unmatched pairs. 11468 records in RAM.
INFO 2026-06-08 09:00:23 MarkDuplicates Read 355,000,000 records. Elapsed time: 00:11:45s. Time for last 1,000,000: 1s. Last read position: chr11:117,206,025
INFO 2026-06-08 09:00:23 MarkDuplicates Tracking 710824 as yet unmatched pairs. 9751 records in RAM.
INFO 2026-06-08 09:00:25 MarkDuplicates Read 356,000,000 records. Elapsed time: 00:11:47s. Time for last 1,000,000: 1s. Last read position: chr11:118,897,173
INFO 2026-06-08 09:00:25 MarkDuplicates Tracking 708352 as yet unmatched pairs. 7278 records in RAM.
INFO 2026-06-08 09:00:26 MarkDuplicates Read 357,000,000 records. Elapsed time: 00:11:48s. Time for last 1,000,000: 1s. Last read position: chr11:121,478,132
INFO 2026-06-08 09:00:26 MarkDuplicates Tracking 705368 as yet unmatched pairs. 4293 records in RAM.
INFO 2026-06-08 09:00:28 MarkDuplicates Read 358,000,000 records. Elapsed time: 00:11:50s. Time for last 1,000,000: 1s. Last read position: chr11:126,413,516
INFO 2026-06-08 09:00:28 MarkDuplicates Tracking 703121 as yet unmatched pairs. 2040 records in RAM.
INFO 2026-06-08 09:00:31 MarkDuplicates Read 359,000,000 records. Elapsed time: 00:11:53s. Time for last 1,000,000: 2s. Last read position: chr12:753,538
INFO 2026-06-08 09:00:31 MarkDuplicates Tracking 703018 as yet unmatched pairs. 83772 records in RAM.
INFO 2026-06-08 09:00:33 MarkDuplicates Read 360,000,000 records. Elapsed time: 00:11:55s. Time for last 1,000,000: 2s. Last read position: chr12:2,885,470
INFO 2026-06-08 09:00:33 MarkDuplicates Tracking 698564 as yet unmatched pairs. 79307 records in RAM.
INFO 2026-06-08 09:00:35 MarkDuplicates Read 361,000,000 records. Elapsed time: 00:11:57s. Time for last 1,000,000: 1s. Last read position: chr12:6,466,367
INFO 2026-06-08 09:00:35 MarkDuplicates Tracking 695727 as yet unmatched pairs. 76469 records in RAM.
INFO 2026-06-08 09:00:37 MarkDuplicates Read 362,000,000 records. Elapsed time: 00:11:59s. Time for last 1,000,000: 1s. Last read position: chr12:6,869,329
INFO 2026-06-08 09:00:37 MarkDuplicates Tracking 693834 as yet unmatched pairs. 74576 records in RAM.
INFO 2026-06-08 09:00:39 MarkDuplicates Read 363,000,000 records. Elapsed time: 00:12:01s. Time for last 1,000,000: 1s. Last read position: chr12:7,091,579
INFO 2026-06-08 09:00:39 MarkDuplicates Tracking 691359 as yet unmatched pairs. 72101 records in RAM.
INFO 2026-06-08 09:00:40 MarkDuplicates Read 364,000,000 records. Elapsed time: 00:12:02s. Time for last 1,000,000: 1s. Last read position: chr12:9,106,320
INFO 2026-06-08 09:00:40 MarkDuplicates Tracking 689944 as yet unmatched pairs. 70683 records in RAM.
INFO 2026-06-08 09:00:42 MarkDuplicates Read 365,000,000 records. Elapsed time: 00:12:04s. Time for last 1,000,000: 1s. Last read position: chr12:12,908,618
INFO 2026-06-08 09:00:42 MarkDuplicates Tracking 688467 as yet unmatched pairs. 69204 records in RAM.
INFO 2026-06-08 09:00:44 MarkDuplicates Read 366,000,000 records. Elapsed time: 00:12:06s. Time for last 1,000,000: 1s. Last read position: chr12:26,656,331
INFO 2026-06-08 09:00:44 MarkDuplicates Tracking 684476 as yet unmatched pairs. 65211 records in RAM.
INFO 2026-06-08 09:00:46 MarkDuplicates Read 367,000,000 records. Elapsed time: 00:12:08s. Time for last 1,000,000: 1s. Last read position: chr12:45,851,332
INFO 2026-06-08 09:00:46 MarkDuplicates Tracking 682209 as yet unmatched pairs. 62940 records in RAM.
INFO 2026-06-08 09:00:47 MarkDuplicates Read 368,000,000 records. Elapsed time: 00:12:09s. Time for last 1,000,000: 1s. Last read position: chr12:48,833,490
INFO 2026-06-08 09:00:47 MarkDuplicates Tracking 679814 as yet unmatched pairs. 60528 records in RAM.
INFO 2026-06-08 09:00:50 MarkDuplicates Read 369,000,000 records. Elapsed time: 00:12:12s. Time for last 1,000,000: 2s. Last read position: chr12:49,052,323
INFO 2026-06-08 09:00:50 MarkDuplicates Tracking 677616 as yet unmatched pairs. 58328 records in RAM.
INFO 2026-06-08 09:00:52 MarkDuplicates Read 370,000,000 records. Elapsed time: 00:12:15s. Time for last 1,000,000: 2s. Last read position: chr12:49,634,022
INFO 2026-06-08 09:00:52 MarkDuplicates Tracking 674865 as yet unmatched pairs. 55574 records in RAM.
INFO 2026-06-08 09:00:54 MarkDuplicates Read 371,000,000 records. Elapsed time: 00:12:16s. Time for last 1,000,000: 1s. Last read position: chr12:51,109,241
INFO 2026-06-08 09:00:54 MarkDuplicates Tracking 672837 as yet unmatched pairs. 53546 records in RAM.
INFO 2026-06-08 09:00:56 MarkDuplicates Read 372,000,000 records. Elapsed time: 00:12:18s. Time for last 1,000,000: 1s. Last read position: chr12:52,949,261
INFO 2026-06-08 09:00:56 MarkDuplicates Tracking 673802 as yet unmatched pairs. 54511 records in RAM.
INFO 2026-06-08 09:00:58 MarkDuplicates Read 373,000,000 records. Elapsed time: 00:12:20s. Time for last 1,000,000: 1s. Last read position: chr12:53,443,518
INFO 2026-06-08 09:00:58 MarkDuplicates Tracking 669474 as yet unmatched pairs. 50181 records in RAM.
INFO 2026-06-08 09:00:59 MarkDuplicates Read 374,000,000 records. Elapsed time: 00:12:21s. Time for last 1,000,000: 1s. Last read position: chr12:54,371,633
INFO 2026-06-08 09:00:59 MarkDuplicates Tracking 665511 as yet unmatched pairs. 46217 records in RAM.
INFO 2026-06-08 09:01:01 MarkDuplicates Read 375,000,000 records. Elapsed time: 00:12:23s. Time for last 1,000,000: 1s. Last read position: chr12:56,111,285
INFO 2026-06-08 09:01:01 MarkDuplicates Tracking 663350 as yet unmatched pairs. 44048 records in RAM.
INFO 2026-06-08 09:01:03 MarkDuplicates Read 376,000,000 records. Elapsed time: 00:12:25s. Time for last 1,000,000: 2s. Last read position: chr12:56,433,640
INFO 2026-06-08 09:01:03 MarkDuplicates Tracking 660791 as yet unmatched pairs. 41486 records in RAM.
INFO 2026-06-08 09:01:05 MarkDuplicates Read 377,000,000 records. Elapsed time: 00:12:27s. Time for last 1,000,000: 1s. Last read position: chr12:57,041,207
INFO 2026-06-08 09:01:05 MarkDuplicates Tracking 658518 as yet unmatched pairs. 39210 records in RAM.
INFO 2026-06-08 09:01:07 MarkDuplicates Read 378,000,000 records. Elapsed time: 00:12:29s. Time for last 1,000,000: 1s. Last read position: chr12:57,178,364
INFO 2026-06-08 09:01:07 MarkDuplicates Tracking 656685 as yet unmatched pairs. 37373 records in RAM.
INFO 2026-06-08 09:01:08 MarkDuplicates Read 379,000,000 records. Elapsed time: 00:12:30s. Time for last 1,000,000: 1s. Last read position: chr12:57,526,795
INFO 2026-06-08 09:01:08 MarkDuplicates Tracking 653970 as yet unmatched pairs. 34656 records in RAM.
INFO 2026-06-08 09:01:10 MarkDuplicates Read 380,000,000 records. Elapsed time: 00:12:32s. Time for last 1,000,000: 1s. Last read position: chr12:64,759,086
INFO 2026-06-08 09:01:10 MarkDuplicates Tracking 651850 as yet unmatched pairs. 32533 records in RAM.
INFO 2026-06-08 09:01:12 MarkDuplicates Read 381,000,000 records. Elapsed time: 00:12:34s. Time for last 1,000,000: 1s. Last read position: chr12:67,657,897
INFO 2026-06-08 09:01:12 MarkDuplicates Tracking 650527 as yet unmatched pairs. 31205 records in RAM.
INFO 2026-06-08 09:01:13 MarkDuplicates Read 382,000,000 records. Elapsed time: 00:12:36s. Time for last 1,000,000: 1s. Last read position: chr12:68,835,929
INFO 2026-06-08 09:01:13 MarkDuplicates Tracking 654279 as yet unmatched pairs. 34948 records in RAM.
INFO 2026-06-08 09:01:15 MarkDuplicates Read 383,000,000 records. Elapsed time: 00:12:37s. Time for last 1,000,000: 1s. Last read position: chr12:69,350,108
INFO 2026-06-08 09:01:15 MarkDuplicates Tracking 655412 as yet unmatched pairs. 36077 records in RAM.
INFO 2026-06-08 09:01:18 MarkDuplicates Read 384,000,000 records. Elapsed time: 00:12:40s. Time for last 1,000,000: 3s. Last read position: chr12:70,332,797
INFO 2026-06-08 09:01:18 MarkDuplicates Tracking 643018 as yet unmatched pairs. 23680 records in RAM.
INFO 2026-06-08 09:01:20 MarkDuplicates Read 385,000,000 records. Elapsed time: 00:12:42s. Time for last 1,000,000: 1s. Last read position: chr12:91,164,615
INFO 2026-06-08 09:01:20 MarkDuplicates Tracking 642586 as yet unmatched pairs. 23238 records in RAM.
INFO 2026-06-08 09:01:22 MarkDuplicates Read 386,000,000 records. Elapsed time: 00:12:44s. Time for last 1,000,000: 1s. Last read position: chr12:103,933,964
INFO 2026-06-08 09:01:22 MarkDuplicates Tracking 638705 as yet unmatched pairs. 19357 records in RAM.
INFO 2026-06-08 09:01:24 MarkDuplicates Read 387,000,000 records. Elapsed time: 00:12:46s. Time for last 1,000,000: 1s. Last read position: chr12:109,176,219
INFO 2026-06-08 09:01:24 MarkDuplicates Tracking 635822 as yet unmatched pairs. 16474 records in RAM.
INFO 2026-06-08 09:01:25 MarkDuplicates Read 388,000,000 records. Elapsed time: 00:12:47s. Time for last 1,000,000: 1s. Last read position: chr12:112,216,291
INFO 2026-06-08 09:01:25 MarkDuplicates Tracking 632978 as yet unmatched pairs. 13624 records in RAM.
INFO 2026-06-08 09:01:27 MarkDuplicates Read 389,000,000 records. Elapsed time: 00:12:49s. Time for last 1,000,000: 1s. Last read position: chr12:116,277,051
INFO 2026-06-08 09:01:27 MarkDuplicates Tracking 631102 as yet unmatched pairs. 11735 records in RAM.
INFO 2026-06-08 09:01:29 MarkDuplicates Read 390,000,000 records. Elapsed time: 00:12:51s. Time for last 1,000,000: 1s. Last read position: chr12:120,565,145
INFO 2026-06-08 09:01:29 MarkDuplicates Tracking 628391 as yet unmatched pairs. 9005 records in RAM.
INFO 2026-06-08 09:01:30 MarkDuplicates Read 391,000,000 records. Elapsed time: 00:12:53s. Time for last 1,000,000: 1s. Last read position: chr12:122,851,822
INFO 2026-06-08 09:01:30 MarkDuplicates Tracking 625408 as yet unmatched pairs. 6021 records in RAM.
INFO 2026-06-08 09:01:33 MarkDuplicates Read 392,000,000 records. Elapsed time: 00:12:55s. Time for last 1,000,000: 2s. Last read position: chr12:124,495,182
INFO 2026-06-08 09:01:33 MarkDuplicates Tracking 623371 as yet unmatched pairs. 3984 records in RAM.
INFO 2026-06-08 09:01:36 MarkDuplicates Read 393,000,000 records. Elapsed time: 00:12:58s. Time for last 1,000,000: 2s. Last read position: chr12:132,730,206
INFO 2026-06-08 09:01:36 MarkDuplicates Tracking 620410 as yet unmatched pairs. 1021 records in RAM.
INFO 2026-06-08 09:01:38 MarkDuplicates Read 394,000,000 records. Elapsed time: 00:13:00s. Time for last 1,000,000: 1s. Last read position: chr13:24,222,997
INFO 2026-06-08 09:01:38 MarkDuplicates Tracking 618400 as yet unmatched pairs. 18343 records in RAM.
INFO 2026-06-08 09:01:39 MarkDuplicates Read 395,000,000 records. Elapsed time: 00:13:01s. Time for last 1,000,000: 1s. Last read position: chr13:37,586,805
INFO 2026-06-08 09:01:39 MarkDuplicates Tracking 615886 as yet unmatched pairs. 15827 records in RAM.
INFO 2026-06-08 09:01:41 MarkDuplicates Read 396,000,000 records. Elapsed time: 00:13:03s. Time for last 1,000,000: 1s. Last read position: chr13:46,779,953
INFO 2026-06-08 09:01:41 MarkDuplicates Tracking 613386 as yet unmatched pairs. 13322 records in RAM.
INFO 2026-06-08 09:01:43 MarkDuplicates Read 397,000,000 records. Elapsed time: 00:13:05s. Time for last 1,000,000: 1s. Last read position: chr13:75,294,976
INFO 2026-06-08 09:01:43 MarkDuplicates Tracking 611021 as yet unmatched pairs. 10954 records in RAM.
INFO 2026-06-08 09:01:44 MarkDuplicates Read 398,000,000 records. Elapsed time: 00:13:06s. Time for last 1,000,000: 1s. Last read position: chr13:97,997,609
INFO 2026-06-08 09:01:44 MarkDuplicates Tracking 609283 as yet unmatched pairs. 9214 records in RAM.
INFO 2026-06-08 09:01:46 MarkDuplicates Read 399,000,000 records. Elapsed time: 00:13:08s. Time for last 1,000,000: 1s. Last read position: chr13:109,784,571
INFO 2026-06-08 09:01:46 MarkDuplicates Tracking 606628 as yet unmatched pairs. 6552 records in RAM.
INFO 2026-06-08 09:01:48 MarkDuplicates Read 400,000,000 records. Elapsed time: 00:13:10s. Time for last 1,000,000: 1s. Last read position: chr13:110,492,116
INFO 2026-06-08 09:01:48 MarkDuplicates Tracking 604243 as yet unmatched pairs. 4167 records in RAM.
INFO 2026-06-08 09:01:49 MarkDuplicates Read 401,000,000 records. Elapsed time: 00:13:12s. Time for last 1,000,000: 1s. Last read position: chr13:113,968,655
INFO 2026-06-08 09:01:49 MarkDuplicates Tracking 600562 as yet unmatched pairs. 486 records in RAM.
INFO 2026-06-08 09:01:52 MarkDuplicates Read 402,000,000 records. Elapsed time: 00:13:14s. Time for last 1,000,000: 2s. Last read position: chr14:21,372,025
INFO 2026-06-08 09:01:52 MarkDuplicates Tracking 598428 as yet unmatched pairs. 51871 records in RAM.
INFO 2026-06-08 09:01:53 MarkDuplicates Read 403,000,000 records. Elapsed time: 00:13:16s. Time for last 1,000,000: 1s. Last read position: chr14:23,059,106
INFO 2026-06-08 09:01:53 MarkDuplicates Tracking 597066 as yet unmatched pairs. 50482 records in RAM.
INFO 2026-06-08 09:01:56 MarkDuplicates Read 404,000,000 records. Elapsed time: 00:13:18s. Time for last 1,000,000: 2s. Last read position: chr14:24,164,821
INFO 2026-06-08 09:01:56 MarkDuplicates Tracking 594630 as yet unmatched pairs. 48046 records in RAM.
INFO 2026-06-08 09:01:59 MarkDuplicates Read 405,000,000 records. Elapsed time: 00:13:21s. Time for last 1,000,000: 3s. Last read position: chr14:31,113,280
INFO 2026-06-08 09:01:59 MarkDuplicates Tracking 590692 as yet unmatched pairs. 44101 records in RAM.
INFO 2026-06-08 09:02:01 MarkDuplicates Read 406,000,000 records. Elapsed time: 00:13:23s. Time for last 1,000,000: 1s. Last read position: chr14:45,120,950
INFO 2026-06-08 09:02:01 MarkDuplicates Tracking 588526 as yet unmatched pairs. 41931 records in RAM.
INFO 2026-06-08 09:02:02 MarkDuplicates Read 407,000,000 records. Elapsed time: 00:13:24s. Time for last 1,000,000: 1s. Last read position: chr14:53,590,326
INFO 2026-06-08 09:02:02 MarkDuplicates Tracking 585921 as yet unmatched pairs. 39308 records in RAM.
INFO 2026-06-08 09:02:04 MarkDuplicates Read 408,000,000 records. Elapsed time: 00:13:26s. Time for last 1,000,000: 1s. Last read position: chr14:61,740,604
INFO 2026-06-08 09:02:04 MarkDuplicates Tracking 584049 as yet unmatched pairs. 37432 records in RAM.
INFO 2026-06-08 09:02:06 MarkDuplicates Read 409,000,000 records. Elapsed time: 00:13:28s. Time for last 1,000,000: 1s. Last read position: chr14:67,316,869
INFO 2026-06-08 09:02:06 MarkDuplicates Tracking 581211 as yet unmatched pairs. 34589 records in RAM.
INFO 2026-06-08 09:02:08 MarkDuplicates Read 410,000,000 records. Elapsed time: 00:13:30s. Time for last 1,000,000: 1s. Last read position: chr14:70,730,633
INFO 2026-06-08 09:02:08 MarkDuplicates Tracking 578863 as yet unmatched pairs. 32235 records in RAM.
INFO 2026-06-08 09:02:09 MarkDuplicates Read 411,000,000 records. Elapsed time: 00:13:31s. Time for last 1,000,000: 1s. Last read position: chr14:74,502,849
INFO 2026-06-08 09:02:09 MarkDuplicates Tracking 577024 as yet unmatched pairs. 30392 records in RAM.
INFO 2026-06-08 09:02:11 MarkDuplicates Read 412,000,000 records. Elapsed time: 00:13:33s. Time for last 1,000,000: 1s. Last read position: chr14:75,732,399
INFO 2026-06-08 09:02:11 MarkDuplicates Tracking 574167 as yet unmatched pairs. 27528 records in RAM.
INFO 2026-06-08 09:02:13 MarkDuplicates Read 413,000,000 records. Elapsed time: 00:13:35s. Time for last 1,000,000: 1s. Last read position: chr14:91,188,956
INFO 2026-06-08 09:02:13 MarkDuplicates Tracking 571646 as yet unmatched pairs. 25006 records in RAM.
INFO 2026-06-08 09:02:14 MarkDuplicates Read 414,000,000 records. Elapsed time: 00:13:36s. Time for last 1,000,000: 1s. Last read position: chr14:94,614,464
INFO 2026-06-08 09:02:14 MarkDuplicates Tracking 571168 as yet unmatched pairs. 24526 records in RAM.
INFO 2026-06-08 09:02:16 MarkDuplicates Read 415,000,000 records. Elapsed time: 00:13:38s. Time for last 1,000,000: 1s. Last read position: chr14:100,882,709
INFO 2026-06-08 09:02:16 MarkDuplicates Tracking 566469 as yet unmatched pairs. 19812 records in RAM.
INFO 2026-06-08 09:02:19 MarkDuplicates Read 416,000,000 records. Elapsed time: 00:13:41s. Time for last 1,000,000: 2s. Last read position: chr14:102,498,100
INFO 2026-06-08 09:02:19 MarkDuplicates Tracking 564240 as yet unmatched pairs. 17579 records in RAM.
INFO 2026-06-08 09:02:21 MarkDuplicates Read 417,000,000 records. Elapsed time: 00:13:43s. Time for last 1,000,000: 2s. Last read position: chr14:104,706,109
INFO 2026-06-08 09:02:21 MarkDuplicates Tracking 562467 as yet unmatched pairs. 15805 records in RAM.
INFO 2026-06-08 09:02:23 MarkDuplicates Read 418,000,000 records. Elapsed time: 00:13:45s. Time for last 1,000,000: 1s. Last read position: chr14:104,948,226
INFO 2026-06-08 09:02:23 MarkDuplicates Tracking 559954 as yet unmatched pairs. 13278 records in RAM.
INFO 2026-06-08 09:02:24 MarkDuplicates Read 419,000,000 records. Elapsed time: 00:13:47s. Time for last 1,000,000: 1s. Last read position: chr14:105,588,184
INFO 2026-06-08 09:02:24 MarkDuplicates Tracking 562342 as yet unmatched pairs. 15659 records in RAM.
INFO 2026-06-08 09:02:26 MarkDuplicates Read 420,000,000 records. Elapsed time: 00:13:48s. Time for last 1,000,000: 1s. Last read position: chr14:105,668,135
INFO 2026-06-08 09:02:26 MarkDuplicates Tracking 561969 as yet unmatched pairs. 15285 records in RAM.
INFO 2026-06-08 09:02:28 MarkDuplicates Read 421,000,000 records. Elapsed time: 00:13:50s. Time for last 1,000,000: 1s. Last read position: chr14:105,708,417
INFO 2026-06-08 09:02:28 MarkDuplicates Tracking 564839 as yet unmatched pairs. 18154 records in RAM.
INFO 2026-06-08 09:02:29 MarkDuplicates Read 422,000,000 records. Elapsed time: 00:13:51s. Time for last 1,000,000: 1s. Last read position: chr14:105,742,025
INFO 2026-06-08 09:02:29 MarkDuplicates Tracking 558710 as yet unmatched pairs. 12023 records in RAM.
INFO 2026-06-08 09:02:31 MarkDuplicates Read 423,000,000 records. Elapsed time: 00:13:53s. Time for last 1,000,000: 1s. Last read position: chr14:105,769,441
INFO 2026-06-08 09:02:31 MarkDuplicates Tracking 552474 as yet unmatched pairs. 5781 records in RAM.
INFO 2026-06-08 09:02:32 MarkDuplicates Read 424,000,000 records. Elapsed time: 00:13:54s. Time for last 1,000,000: 1s. Last read position: chr14:105,855,919
INFO 2026-06-08 09:02:32 MarkDuplicates Tracking 549481 as yet unmatched pairs. 2785 records in RAM.
INFO 2026-06-08 09:02:34 MarkDuplicates Read 425,000,000 records. Elapsed time: 00:13:56s. Time for last 1,000,000: 2s. Last read position: chr15:28,111,880
INFO 2026-06-08 09:02:34 MarkDuplicates Tracking 545284 as yet unmatched pairs. 43181 records in RAM.
INFO 2026-06-08 09:02:36 MarkDuplicates Read 426,000,000 records. Elapsed time: 00:13:58s. Time for last 1,000,000: 1s. Last read position: chr15:32,730,724
INFO 2026-06-08 09:02:36 MarkDuplicates Tracking 548712 as yet unmatched pairs. 46609 records in RAM.
INFO 2026-06-08 09:02:38 MarkDuplicates Read 427,000,000 records. Elapsed time: 00:14:00s. Time for last 1,000,000: 1s. Last read position: chr15:34,341,900
INFO 2026-06-08 09:02:38 MarkDuplicates Tracking 543211 as yet unmatched pairs. 41106 records in RAM.
INFO 2026-06-08 09:02:41 MarkDuplicates Read 428,000,000 records. Elapsed time: 00:14:03s. Time for last 1,000,000: 2s. Last read position: chr15:40,339,530
INFO 2026-06-08 09:02:41 MarkDuplicates Tracking 539225 as yet unmatched pairs. 37120 records in RAM.
INFO 2026-06-08 09:02:43 MarkDuplicates Read 429,000,000 records. Elapsed time: 00:14:05s. Time for last 1,000,000: 1s. Last read position: chr15:41,822,014
INFO 2026-06-08 09:02:43 MarkDuplicates Tracking 536722 as yet unmatched pairs. 34612 records in RAM.
INFO 2026-06-08 09:02:44 MarkDuplicates Read 430,000,000 records. Elapsed time: 00:14:06s. Time for last 1,000,000: 1s. Last read position: chr15:43,671,012
INFO 2026-06-08 09:02:44 MarkDuplicates Tracking 534973 as yet unmatched pairs. 32863 records in RAM.
INFO 2026-06-08 09:02:46 MarkDuplicates Read 431,000,000 records. Elapsed time: 00:14:08s. Time for last 1,000,000: 1s. Last read position: chr15:45,097,344
INFO 2026-06-08 09:02:46 MarkDuplicates Tracking 533547 as yet unmatched pairs. 31427 records in RAM.
INFO 2026-06-08 09:02:48 MarkDuplicates Read 432,000,000 records. Elapsed time: 00:14:10s. Time for last 1,000,000: 1s. Last read position: chr15:50,637,421
INFO 2026-06-08 09:02:48 MarkDuplicates Tracking 530149 as yet unmatched pairs. 28028 records in RAM.
INFO 2026-06-08 09:02:49 MarkDuplicates Read 433,000,000 records. Elapsed time: 00:14:11s. Time for last 1,000,000: 1s. Last read position: chr15:59,089,721
INFO 2026-06-08 09:02:49 MarkDuplicates Tracking 527996 as yet unmatched pairs. 25871 records in RAM.
INFO 2026-06-08 09:02:51 MarkDuplicates Read 434,000,000 records. Elapsed time: 00:14:13s. Time for last 1,000,000: 1s. Last read position: chr15:63,674,572
INFO 2026-06-08 09:02:51 MarkDuplicates Tracking 525813 as yet unmatched pairs. 23687 records in RAM.
INFO 2026-06-08 09:02:53 MarkDuplicates Read 435,000,000 records. Elapsed time: 00:14:15s. Time for last 1,000,000: 1s. Last read position: chr15:66,499,551
INFO 2026-06-08 09:02:53 MarkDuplicates Tracking 524803 as yet unmatched pairs. 22667 records in RAM.
INFO 2026-06-08 09:02:55 MarkDuplicates Read 436,000,000 records. Elapsed time: 00:14:17s. Time for last 1,000,000: 1s. Last read position: chr15:72,208,870
INFO 2026-06-08 09:02:55 MarkDuplicates Tracking 521489 as yet unmatched pairs. 19348 records in RAM.
INFO 2026-06-08 09:02:58 MarkDuplicates Read 437,000,000 records. Elapsed time: 00:14:20s. Time for last 1,000,000: 2s. Last read position: chr15:74,044,706
INFO 2026-06-08 09:02:58 MarkDuplicates Tracking 518501 as yet unmatched pairs. 16360 records in RAM.
INFO 2026-06-08 09:03:00 MarkDuplicates Read 438,000,000 records. Elapsed time: 00:14:22s. Time for last 1,000,000: 2s. Last read position: chr15:75,617,474
INFO 2026-06-08 09:03:00 MarkDuplicates Tracking 515243 as yet unmatched pairs. 13102 records in RAM.
INFO 2026-06-08 09:03:02 MarkDuplicates Read 439,000,000 records. Elapsed time: 00:14:24s. Time for last 1,000,000: 1s. Last read position: chr15:80,695,380
INFO 2026-06-08 09:03:02 MarkDuplicates Tracking 513478 as yet unmatched pairs. 11333 records in RAM.
INFO 2026-06-08 09:03:04 MarkDuplicates Read 440,000,000 records. Elapsed time: 00:14:26s. Time for last 1,000,000: 1s. Last read position: chr15:84,657,177
INFO 2026-06-08 09:03:04 MarkDuplicates Tracking 510059 as yet unmatched pairs. 7903 records in RAM.
INFO 2026-06-08 09:03:06 MarkDuplicates Read 441,000,000 records. Elapsed time: 00:14:28s. Time for last 1,000,000: 1s. Last read position: chr15:89,323,411
INFO 2026-06-08 09:03:06 MarkDuplicates Tracking 508039 as yet unmatched pairs. 5869 records in RAM.
INFO 2026-06-08 09:03:07 MarkDuplicates Read 442,000,000 records. Elapsed time: 00:14:29s. Time for last 1,000,000: 1s. Last read position: chr15:90,935,615
INFO 2026-06-08 09:03:07 MarkDuplicates Tracking 505352 as yet unmatched pairs. 3180 records in RAM.
INFO 2026-06-08 09:03:09 MarkDuplicates Read 443,000,000 records. Elapsed time: 00:14:31s. Time for last 1,000,000: 1s. Last read position: chr15:101,276,659
INFO 2026-06-08 09:03:09 MarkDuplicates Tracking 502493 as yet unmatched pairs. 317 records in RAM.
INFO 2026-06-08 09:03:12 MarkDuplicates Read 444,000,000 records. Elapsed time: 00:14:34s. Time for last 1,000,000: 2s. Last read position: chr16:582,808
INFO 2026-06-08 09:03:12 MarkDuplicates Tracking 500124 as yet unmatched pairs. 83443 records in RAM.
INFO 2026-06-08 09:03:14 MarkDuplicates Read 445,000,000 records. Elapsed time: 00:14:36s. Time for last 1,000,000: 1s. Last read position: chr16:1,221,870
INFO 2026-06-08 09:03:14 MarkDuplicates Tracking 496883 as yet unmatched pairs. 80202 records in RAM.
INFO 2026-06-08 09:03:16 MarkDuplicates Read 446,000,000 records. Elapsed time: 00:14:38s. Time for last 1,000,000: 1s. Last read position: chr16:1,788,182
INFO 2026-06-08 09:03:16 MarkDuplicates Tracking 494938 as yet unmatched pairs. 78256 records in RAM.
INFO 2026-06-08 09:03:18 MarkDuplicates Read 447,000,000 records. Elapsed time: 00:14:40s. Time for last 1,000,000: 2s. Last read position: chr16:2,114,333
INFO 2026-06-08 09:03:18 MarkDuplicates Tracking 491583 as yet unmatched pairs. 74897 records in RAM.
INFO 2026-06-08 09:03:20 MarkDuplicates Read 448,000,000 records. Elapsed time: 00:14:42s. Time for last 1,000,000: 2s. Last read position: chr16:2,760,389
INFO 2026-06-08 09:03:20 MarkDuplicates Tracking 491597 as yet unmatched pairs. 74909 records in RAM.
INFO 2026-06-08 09:03:22 MarkDuplicates Read 449,000,000 records. Elapsed time: 00:14:44s. Time for last 1,000,000: 1s. Last read position: chr16:2,767,044
INFO 2026-06-08 09:03:22 MarkDuplicates Tracking 491862 as yet unmatched pairs. 75174 records in RAM.
INFO 2026-06-08 09:03:23 MarkDuplicates Read 450,000,000 records. Elapsed time: 00:14:45s. Time for last 1,000,000: 1s. Last read position: chr16:3,020,440
INFO 2026-06-08 09:03:23 MarkDuplicates Tracking 484598 as yet unmatched pairs. 67898 records in RAM.
INFO 2026-06-08 09:03:25 MarkDuplicates Read 451,000,000 records. Elapsed time: 00:14:47s. Time for last 1,000,000: 1s. Last read position: chr16:4,114,733
INFO 2026-06-08 09:03:25 MarkDuplicates Tracking 480680 as yet unmatched pairs. 63978 records in RAM.
INFO 2026-06-08 09:03:27 MarkDuplicates Read 452,000,000 records. Elapsed time: 00:14:49s. Time for last 1,000,000: 1s. Last read position: chr16:8,903,284
INFO 2026-06-08 09:03:27 MarkDuplicates Tracking 478061 as yet unmatched pairs. 61359 records in RAM.
INFO 2026-06-08 09:03:29 MarkDuplicates Read 453,000,000 records. Elapsed time: 00:14:51s. Time for last 1,000,000: 2s. Last read position: chr16:14,593,311
INFO 2026-06-08 09:03:29 MarkDuplicates Tracking 475676 as yet unmatched pairs. 58974 records in RAM.
INFO 2026-06-08 09:03:31 MarkDuplicates Read 454,000,000 records. Elapsed time: 00:14:53s. Time for last 1,000,000: 2s. Last read position: chr16:15,086,386
INFO 2026-06-08 09:03:31 MarkDuplicates Tracking 474229 as yet unmatched pairs. 57522 records in RAM.
INFO 2026-06-08 09:03:32 MarkDuplicates Read 455,000,000 records. Elapsed time: 00:14:54s. Time for last 1,000,000: 1s. Last read position: chr16:16,285,454
INFO 2026-06-08 09:03:32 MarkDuplicates Tracking 471899 as yet unmatched pairs. 55190 records in RAM.
INFO 2026-06-08 09:03:34 MarkDuplicates Read 456,000,000 records. Elapsed time: 00:14:56s. Time for last 1,000,000: 1s. Last read position: chr16:17,198,276
INFO 2026-06-08 09:03:34 MarkDuplicates Tracking 471209 as yet unmatched pairs. 54500 records in RAM.
INFO 2026-06-08 09:03:35 MarkDuplicates Read 457,000,000 records. Elapsed time: 00:14:57s. Time for last 1,000,000: 1s. Last read position: chr16:18,395,292
INFO 2026-06-08 09:03:35 MarkDuplicates Tracking 469828 as yet unmatched pairs. 53119 records in RAM.
INFO 2026-06-08 09:03:36 MarkDuplicates Read 458,000,000 records. Elapsed time: 00:14:59s. Time for last 1,000,000: 1s. Last read position: chr16:19,536,682
INFO 2026-06-08 09:03:36 MarkDuplicates Tracking 467624 as yet unmatched pairs. 50912 records in RAM.
INFO 2026-06-08 09:03:38 MarkDuplicates Read 459,000,000 records. Elapsed time: 00:15:00s. Time for last 1,000,000: 1s. Last read position: chr16:21,834,722
INFO 2026-06-08 09:03:38 MarkDuplicates Tracking 466413 as yet unmatched pairs. 49701 records in RAM.
INFO 2026-06-08 09:03:39 MarkDuplicates Read 460,000,000 records. Elapsed time: 00:15:01s. Time for last 1,000,000: 1s. Last read position: chr16:22,519,176
INFO 2026-06-08 09:03:39 MarkDuplicates Tracking 465470 as yet unmatched pairs. 48754 records in RAM.
INFO 2026-06-08 09:03:41 MarkDuplicates Read 461,000,000 records. Elapsed time: 00:15:03s. Time for last 1,000,000: 1s. Last read position: chr16:24,571,970
INFO 2026-06-08 09:03:41 MarkDuplicates Tracking 464432 as yet unmatched pairs. 47713 records in RAM.
INFO 2026-06-08 09:03:42 MarkDuplicates Read 462,000,000 records. Elapsed time: 00:15:04s. Time for last 1,000,000: 1s. Last read position: chr16:28,488,599
INFO 2026-06-08 09:03:42 MarkDuplicates Tracking 462618 as yet unmatched pairs. 45898 records in RAM.
INFO 2026-06-08 09:03:44 MarkDuplicates Read 463,000,000 records. Elapsed time: 00:15:06s. Time for last 1,000,000: 1s. Last read position: chr16:28,985,452
INFO 2026-06-08 09:03:44 MarkDuplicates Tracking 460682 as yet unmatched pairs. 43962 records in RAM.
INFO 2026-06-08 09:03:45 MarkDuplicates Read 464,000,000 records. Elapsed time: 00:15:07s. Time for last 1,000,000: 1s. Last read position: chr16:29,663,901
INFO 2026-06-08 09:03:45 MarkDuplicates Tracking 459556 as yet unmatched pairs. 42833 records in RAM.
INFO 2026-06-08 09:03:47 MarkDuplicates Read 465,000,000 records. Elapsed time: 00:15:09s. Time for last 1,000,000: 1s. Last read position: chr16:30,068,827
INFO 2026-06-08 09:03:47 MarkDuplicates Tracking 458262 as yet unmatched pairs. 41538 records in RAM.
INFO 2026-06-08 09:03:48 MarkDuplicates Read 466,000,000 records. Elapsed time: 00:15:11s. Time for last 1,000,000: 1s. Last read position: chr16:30,268,531
INFO 2026-06-08 09:03:48 MarkDuplicates Tracking 454782 as yet unmatched pairs. 38058 records in RAM.
INFO 2026-06-08 09:03:50 MarkDuplicates Read 467,000,000 records. Elapsed time: 00:15:12s. Time for last 1,000,000: 1s. Last read position: chr16:30,724,607
INFO 2026-06-08 09:03:50 MarkDuplicates Tracking 453426 as yet unmatched pairs. 36701 records in RAM.
INFO 2026-06-08 09:03:52 MarkDuplicates Read 468,000,000 records. Elapsed time: 00:15:14s. Time for last 1,000,000: 1s. Last read position: chr16:31,183,940
INFO 2026-06-08 09:03:52 MarkDuplicates Tracking 455021 as yet unmatched pairs. 38284 records in RAM.
INFO 2026-06-08 09:03:54 MarkDuplicates Read 469,000,000 records. Elapsed time: 00:15:16s. Time for last 1,000,000: 1s. Last read position: chr16:47,660,753
INFO 2026-06-08 09:03:54 MarkDuplicates Tracking 447561 as yet unmatched pairs. 30818 records in RAM.
INFO 2026-06-08 09:03:55 MarkDuplicates Read 470,000,000 records. Elapsed time: 00:15:17s. Time for last 1,000,000: 1s. Last read position: chr16:55,485,635
INFO 2026-06-08 09:03:55 MarkDuplicates Tracking 446108 as yet unmatched pairs. 29363 records in RAM.
INFO 2026-06-08 09:03:57 MarkDuplicates Read 471,000,000 records. Elapsed time: 00:15:19s. Time for last 1,000,000: 1s. Last read position: chr16:57,363,994
INFO 2026-06-08 09:03:57 MarkDuplicates Tracking 443758 as yet unmatched pairs. 27013 records in RAM.
INFO 2026-06-08 09:03:58 MarkDuplicates Read 472,000,000 records. Elapsed time: 00:15:20s. Time for last 1,000,000: 1s. Last read position: chr16:64,992,981
INFO 2026-06-08 09:03:58 MarkDuplicates Tracking 440775 as yet unmatched pairs. 24007 records in RAM.
INFO 2026-06-08 09:04:00 MarkDuplicates Read 473,000,000 records. Elapsed time: 00:15:22s. Time for last 1,000,000: 1s. Last read position: chr16:67,651,463
INFO 2026-06-08 09:04:00 MarkDuplicates Tracking 437181 as yet unmatched pairs. 20413 records in RAM.
INFO 2026-06-08 09:04:02 MarkDuplicates Read 474,000,000 records. Elapsed time: 00:15:24s. Time for last 1,000,000: 1s. Last read position: chr16:69,113,461
INFO 2026-06-08 09:04:02 MarkDuplicates Tracking 434623 as yet unmatched pairs. 17855 records in RAM.
INFO 2026-06-08 09:04:03 MarkDuplicates Read 475,000,000 records. Elapsed time: 00:15:26s. Time for last 1,000,000: 1s. Last read position: chr16:70,329,414
INFO 2026-06-08 09:04:03 MarkDuplicates Tracking 432472 as yet unmatched pairs. 15701 records in RAM.
INFO 2026-06-08 09:04:06 MarkDuplicates Read 476,000,000 records. Elapsed time: 00:15:28s. Time for last 1,000,000: 2s. Last read position: chr16:74,469,043
INFO 2026-06-08 09:04:06 MarkDuplicates Tracking 429886 as yet unmatched pairs. 13107 records in RAM.
INFO 2026-06-08 09:04:07 MarkDuplicates Read 477,000,000 records. Elapsed time: 00:15:30s. Time for last 1,000,000: 1s. Last read position: chr16:84,181,617
INFO 2026-06-08 09:04:07 MarkDuplicates Tracking 427662 as yet unmatched pairs. 10877 records in RAM.
INFO 2026-06-08 09:04:09 MarkDuplicates Read 478,000,000 records. Elapsed time: 00:15:31s. Time for last 1,000,000: 1s. Last read position: chr16:88,437,307
INFO 2026-06-08 09:04:09 MarkDuplicates Tracking 424486 as yet unmatched pairs. 7698 records in RAM.
INFO 2026-06-08 09:04:11 MarkDuplicates Read 479,000,000 records. Elapsed time: 00:15:33s. Time for last 1,000,000: 1s. Last read position: chr16:88,741,465
INFO 2026-06-08 09:04:11 MarkDuplicates Tracking 422183 as yet unmatched pairs. 5391 records in RAM.
INFO 2026-06-08 09:04:12 MarkDuplicates Read 480,000,000 records. Elapsed time: 00:15:34s. Time for last 1,000,000: 1s. Last read position: chr16:89,645,987
INFO 2026-06-08 09:04:12 MarkDuplicates Tracking 419925 as yet unmatched pairs. 3131 records in RAM.
INFO 2026-06-08 09:04:15 MarkDuplicates Read 481,000,000 records. Elapsed time: 00:15:37s. Time for last 1,000,000: 2s. Last read position: chr17:822,366
INFO 2026-06-08 09:04:15 MarkDuplicates Tracking 416479 as yet unmatched pairs. 116071 records in RAM.
INFO 2026-06-08 09:04:17 MarkDuplicates Read 482,000,000 records. Elapsed time: 00:15:39s. Time for last 1,000,000: 1s. Last read position: chr17:1,727,636
INFO 2026-06-08 09:04:17 MarkDuplicates Tracking 414094 as yet unmatched pairs. 113684 records in RAM.
INFO 2026-06-08 09:04:18 MarkDuplicates Read 483,000,000 records. Elapsed time: 00:15:40s. Time for last 1,000,000: 1s. Last read position: chr17:3,813,038
INFO 2026-06-08 09:04:18 MarkDuplicates Tracking 411221 as yet unmatched pairs. 110811 records in RAM.
INFO 2026-06-08 09:04:20 MarkDuplicates Read 484,000,000 records. Elapsed time: 00:15:42s. Time for last 1,000,000: 1s. Last read position: chr17:4,735,310
INFO 2026-06-08 09:04:20 MarkDuplicates Tracking 409206 as yet unmatched pairs. 108794 records in RAM.
INFO 2026-06-08 09:04:22 MarkDuplicates Read 485,000,000 records. Elapsed time: 00:15:44s. Time for last 1,000,000: 1s. Last read position: chr17:5,444,230
INFO 2026-06-08 09:04:22 MarkDuplicates Tracking 405971 as yet unmatched pairs. 105558 records in RAM.
INFO 2026-06-08 09:04:23 MarkDuplicates Read 486,000,000 records. Elapsed time: 00:15:45s. Time for last 1,000,000: 1s. Last read position: chr17:7,311,405
INFO 2026-06-08 09:04:23 MarkDuplicates Tracking 405565 as yet unmatched pairs. 105152 records in RAM.
INFO 2026-06-08 09:04:25 MarkDuplicates Read 487,000,000 records. Elapsed time: 00:15:47s. Time for last 1,000,000: 1s. Last read position: chr17:7,563,118
INFO 2026-06-08 09:04:25 MarkDuplicates Tracking 400976 as yet unmatched pairs. 100559 records in RAM.
INFO 2026-06-08 09:04:27 MarkDuplicates Read 488,000,000 records. Elapsed time: 00:15:49s. Time for last 1,000,000: 1s. Last read position: chr17:7,910,853
INFO 2026-06-08 09:04:27 MarkDuplicates Tracking 399333 as yet unmatched pairs. 98916 records in RAM.
INFO 2026-06-08 09:04:29 MarkDuplicates Read 489,000,000 records. Elapsed time: 00:15:51s. Time for last 1,000,000: 2s. Last read position: chr17:15,259,156
INFO 2026-06-08 09:04:29 MarkDuplicates Tracking 397644 as yet unmatched pairs. 97225 records in RAM.
INFO 2026-06-08 09:04:31 MarkDuplicates Read 490,000,000 records. Elapsed time: 00:15:53s. Time for last 1,000,000: 1s. Last read position: chr17:17,158,925
INFO 2026-06-08 09:04:31 MarkDuplicates Tracking 395743 as yet unmatched pairs. 95322 records in RAM.
INFO 2026-06-08 09:04:33 MarkDuplicates Read 491,000,000 records. Elapsed time: 00:15:55s. Time for last 1,000,000: 2s. Last read position: chr17:18,317,765
INFO 2026-06-08 09:04:33 MarkDuplicates Tracking 391121 as yet unmatched pairs. 90700 records in RAM.
INFO 2026-06-08 09:04:35 MarkDuplicates Read 492,000,000 records. Elapsed time: 00:15:57s. Time for last 1,000,000: 1s. Last read position: chr17:21,312,193
INFO 2026-06-08 09:04:35 MarkDuplicates Tracking 389684 as yet unmatched pairs. 89262 records in RAM.
INFO 2026-06-08 09:04:37 MarkDuplicates Read 493,000,000 records. Elapsed time: 00:15:59s. Time for last 1,000,000: 1s. Last read position: chr17:28,720,315
INFO 2026-06-08 09:04:37 MarkDuplicates Tracking 386659 as yet unmatched pairs. 86234 records in RAM.
INFO 2026-06-08 09:04:38 MarkDuplicates Read 494,000,000 records. Elapsed time: 00:16:00s. Time for last 1,000,000: 1s. Last read position: chr17:30,492,679
INFO 2026-06-08 09:04:38 MarkDuplicates Tracking 384036 as yet unmatched pairs. 83610 records in RAM.
INFO 2026-06-08 09:04:40 MarkDuplicates Read 495,000,000 records. Elapsed time: 00:16:02s. Time for last 1,000,000: 1s. Last read position: chr17:35,258,812
INFO 2026-06-08 09:04:40 MarkDuplicates Tracking 382664 as yet unmatched pairs. 82234 records in RAM.
INFO 2026-06-08 09:04:42 MarkDuplicates Read 496,000,000 records. Elapsed time: 00:16:04s. Time for last 1,000,000: 1s. Last read position: chr17:36,953,000
INFO 2026-06-08 09:04:42 MarkDuplicates Tracking 379798 as yet unmatched pairs. 79368 records in RAM.
INFO 2026-06-08 09:04:43 MarkDuplicates Read 497,000,000 records. Elapsed time: 00:16:05s. Time for last 1,000,000: 1s. Last read position: chr17:38,735,376
INFO 2026-06-08 09:04:43 MarkDuplicates Tracking 377974 as yet unmatched pairs. 77542 records in RAM.
INFO 2026-06-08 09:04:45 MarkDuplicates Read 498,000,000 records. Elapsed time: 00:16:07s. Time for last 1,000,000: 1s. Last read position: chr17:39,715,284
INFO 2026-06-08 09:04:45 MarkDuplicates Tracking 377094 as yet unmatched pairs. 76662 records in RAM.
INFO 2026-06-08 09:04:47 MarkDuplicates Read 499,000,000 records. Elapsed time: 00:16:09s. Time for last 1,000,000: 1s. Last read position: chr17:40,390,064
INFO 2026-06-08 09:04:47 MarkDuplicates Tracking 373239 as yet unmatched pairs. 72807 records in RAM.
INFO 2026-06-08 09:04:48 MarkDuplicates Read 500,000,000 records. Elapsed time: 00:16:10s. Time for last 1,000,000: 1s. Last read position: chr17:41,764,964
INFO 2026-06-08 09:04:48 MarkDuplicates Tracking 371155 as yet unmatched pairs. 70719 records in RAM.
INFO 2026-06-08 09:04:50 MarkDuplicates Read 501,000,000 records. Elapsed time: 00:16:12s. Time for last 1,000,000: 1s. Last read position: chr17:42,337,817
INFO 2026-06-08 09:04:50 MarkDuplicates Tracking 367482 as yet unmatched pairs. 67043 records in RAM.
INFO 2026-06-08 09:04:52 MarkDuplicates Read 502,000,000 records. Elapsed time: 00:16:14s. Time for last 1,000,000: 1s. Last read position: chr17:43,498,856
INFO 2026-06-08 09:04:52 MarkDuplicates Tracking 365008 as yet unmatched pairs. 64569 records in RAM.
INFO 2026-06-08 09:04:53 MarkDuplicates Read 503,000,000 records. Elapsed time: 00:16:15s. Time for last 1,000,000: 1s. Last read position: chr17:44,398,640
INFO 2026-06-08 09:04:53 MarkDuplicates Tracking 362333 as yet unmatched pairs. 61894 records in RAM.
INFO 2026-06-08 09:04:55 MarkDuplicates Read 504,000,000 records. Elapsed time: 00:16:17s. Time for last 1,000,000: 1s. Last read position: chr17:46,031,783
INFO 2026-06-08 09:04:55 MarkDuplicates Tracking 360166 as yet unmatched pairs. 59726 records in RAM.
INFO 2026-06-08 09:05:49 MarkDuplicates Read 505,000,000 records. Elapsed time: 00:17:11s. Time for last 1,000,000: 53s. Last read position: chr17:47,809,099
INFO 2026-06-08 09:05:49 MarkDuplicates Tracking 358080 as yet unmatched pairs. 57639 records in RAM.
INFO 2026-06-08 09:06:57 MarkDuplicates Read 506,000,000 records. Elapsed time: 00:18:19s. Time for last 1,000,000: 68s. Last read position: chr17:50,079,155
INFO 2026-06-08 09:06:57 MarkDuplicates Tracking 355440 as yet unmatched pairs. 54994 records in RAM.
INFO 2026-06-08 09:06:59 MarkDuplicates Read 507,000,000 records. Elapsed time: 00:18:21s. Time for last 1,000,000: 1s. Last read position: chr17:50,188,609
INFO 2026-06-08 09:06:59 MarkDuplicates Tracking 364418 as yet unmatched pairs. 63969 records in RAM.
INFO 2026-06-08 09:07:01 MarkDuplicates Read 508,000,000 records. Elapsed time: 00:18:23s. Time for last 1,000,000: 1s. Last read position: chr17:50,191,472
INFO 2026-06-08 09:07:01 MarkDuplicates Tracking 361888 as yet unmatched pairs. 61439 records in RAM.
INFO 2026-06-08 09:07:03 MarkDuplicates Read 509,000,000 records. Elapsed time: 00:18:25s. Time for last 1,000,000: 1s. Last read position: chr17:50,195,046
INFO 2026-06-08 09:07:03 MarkDuplicates Tracking 367017 as yet unmatched pairs. 66568 records in RAM.
INFO 2026-06-08 09:07:05 MarkDuplicates Read 510,000,000 records. Elapsed time: 00:18:27s. Time for last 1,000,000: 1s. Last read position: chr17:50,198,160
INFO 2026-06-08 09:07:05 MarkDuplicates Tracking 352204 as yet unmatched pairs. 51754 records in RAM.
INFO 2026-06-08 09:07:07 MarkDuplicates Read 511,000,000 records. Elapsed time: 00:18:29s. Time for last 1,000,000: 2s. Last read position: chr17:50,676,432
INFO 2026-06-08 09:07:07 MarkDuplicates Tracking 343068 as yet unmatched pairs. 42618 records in RAM.
INFO 2026-06-08 09:07:09 MarkDuplicates Read 512,000,000 records. Elapsed time: 00:18:31s. Time for last 1,000,000: 1s. Last read position: chr17:58,004,950
INFO 2026-06-08 09:07:09 MarkDuplicates Tracking 339969 as yet unmatched pairs. 39515 records in RAM.
INFO 2026-06-08 09:07:11 MarkDuplicates Read 513,000,000 records. Elapsed time: 00:18:33s. Time for last 1,000,000: 1s. Last read position: chr17:59,683,142
INFO 2026-06-08 09:07:11 MarkDuplicates Tracking 339156 as yet unmatched pairs. 38702 records in RAM.
INFO 2026-06-08 09:07:12 MarkDuplicates Read 514,000,000 records. Elapsed time: 00:18:34s. Time for last 1,000,000: 1s. Last read position: chr17:63,483,522
INFO 2026-06-08 09:07:12 MarkDuplicates Tracking 334784 as yet unmatched pairs. 34325 records in RAM.
INFO 2026-06-08 09:07:14 MarkDuplicates Read 515,000,000 records. Elapsed time: 00:18:36s. Time for last 1,000,000: 1s. Last read position: chr17:64,800,679
INFO 2026-06-08 09:07:14 MarkDuplicates Tracking 332820 as yet unmatched pairs. 32361 records in RAM.
INFO 2026-06-08 09:07:16 MarkDuplicates Read 516,000,000 records. Elapsed time: 00:18:38s. Time for last 1,000,000: 1s. Last read position: chr17:68,877,580
INFO 2026-06-08 09:07:16 MarkDuplicates Tracking 329924 as yet unmatched pairs. 29463 records in RAM.
INFO 2026-06-08 09:07:17 MarkDuplicates Read 517,000,000 records. Elapsed time: 00:18:39s. Time for last 1,000,000: 1s. Last read position: chr17:75,168,245
INFO 2026-06-08 09:07:17 MarkDuplicates Tracking 327799 as yet unmatched pairs. 27336 records in RAM.
INFO 2026-06-08 09:07:19 MarkDuplicates Read 518,000,000 records. Elapsed time: 00:18:41s. Time for last 1,000,000: 1s. Last read position: chr17:75,729,372
INFO 2026-06-08 09:07:19 MarkDuplicates Tracking 325311 as yet unmatched pairs. 24848 records in RAM.
INFO 2026-06-08 09:07:20 MarkDuplicates Read 519,000,000 records. Elapsed time: 00:18:42s. Time for last 1,000,000: 1s. Last read position: chr17:76,003,379
INFO 2026-06-08 09:07:20 MarkDuplicates Tracking 321500 as yet unmatched pairs. 21037 records in RAM.
INFO 2026-06-08 09:07:22 MarkDuplicates Read 520,000,000 records. Elapsed time: 00:18:44s. Time for last 1,000,000: 1s. Last read position: chr17:77,487,481
INFO 2026-06-08 09:07:22 MarkDuplicates Tracking 319444 as yet unmatched pairs. 18981 records in RAM.
INFO 2026-06-08 09:07:24 MarkDuplicates Read 521,000,000 records. Elapsed time: 00:18:46s. Time for last 1,000,000: 1s. Last read position: chr17:78,971,795
INFO 2026-06-08 09:07:24 MarkDuplicates Tracking 317693 as yet unmatched pairs. 17229 records in RAM.
INFO 2026-06-08 09:07:25 MarkDuplicates Read 522,000,000 records. Elapsed time: 00:18:47s. Time for last 1,000,000: 1s. Last read position: chr17:80,325,053
INFO 2026-06-08 09:07:25 MarkDuplicates Tracking 314625 as yet unmatched pairs. 14161 records in RAM.
INFO 2026-06-08 09:07:27 MarkDuplicates Read 523,000,000 records. Elapsed time: 00:18:49s. Time for last 1,000,000: 1s. Last read position: chr17:81,120,688
INFO 2026-06-08 09:07:27 MarkDuplicates Tracking 310998 as yet unmatched pairs. 10534 records in RAM.
INFO 2026-06-08 09:07:29 MarkDuplicates Read 524,000,000 records. Elapsed time: 00:18:51s. Time for last 1,000,000: 1s. Last read position: chr17:81,688,721
INFO 2026-06-08 09:07:29 MarkDuplicates Tracking 308199 as yet unmatched pairs. 7735 records in RAM.
INFO 2026-06-08 09:07:30 MarkDuplicates Read 525,000,000 records. Elapsed time: 00:18:52s. Time for last 1,000,000: 1s. Last read position: chr17:82,009,505
INFO 2026-06-08 09:07:30 MarkDuplicates Tracking 305849 as yet unmatched pairs. 5385 records in RAM.
INFO 2026-06-08 09:07:32 MarkDuplicates Read 526,000,000 records. Elapsed time: 00:18:54s. Time for last 1,000,000: 1s. Last read position: chr17:82,443,486
INFO 2026-06-08 09:07:32 MarkDuplicates Tracking 304343 as yet unmatched pairs. 3878 records in RAM.
INFO 2026-06-08 09:07:34 MarkDuplicates Read 527,000,000 records. Elapsed time: 00:18:56s. Time for last 1,000,000: 1s. Last read position: chr18:6,717,035
INFO 2026-06-08 09:07:34 MarkDuplicates Tracking 299265 as yet unmatched pairs. 10470 records in RAM.
INFO 2026-06-08 09:07:35 MarkDuplicates Read 528,000,000 records. Elapsed time: 00:18:57s. Time for last 1,000,000: 1s. Last read position: chr18:21,778,110
INFO 2026-06-08 09:07:35 MarkDuplicates Tracking 297258 as yet unmatched pairs. 8462 records in RAM.
INFO 2026-06-08 09:07:38 MarkDuplicates Read 529,000,000 records. Elapsed time: 00:19:00s. Time for last 1,000,000: 2s. Last read position: chr18:44,701,386
INFO 2026-06-08 09:07:38 MarkDuplicates Tracking 295194 as yet unmatched pairs. 6396 records in RAM.
INFO 2026-06-08 09:07:39 MarkDuplicates Read 530,000,000 records. Elapsed time: 00:19:01s. Time for last 1,000,000: 1s. Last read position: chr18:57,613,658
INFO 2026-06-08 09:07:39 MarkDuplicates Tracking 292377 as yet unmatched pairs. 3579 records in RAM.
INFO 2026-06-08 09:07:41 MarkDuplicates Read 531,000,000 records. Elapsed time: 00:19:03s. Time for last 1,000,000: 1s. Last read position: chr18:76,441,890
INFO 2026-06-08 09:07:41 MarkDuplicates Tracking 289804 as yet unmatched pairs. 1006 records in RAM.
INFO 2026-06-08 09:07:44 MarkDuplicates Read 532,000,000 records. Elapsed time: 00:19:06s. Time for last 1,000,000: 3s. Last read position: chr19:804,535
INFO 2026-06-08 09:07:44 MarkDuplicates Tracking 289454 as yet unmatched pairs. 136998 records in RAM.
INFO 2026-06-08 09:07:46 MarkDuplicates Read 533,000,000 records. Elapsed time: 00:19:08s. Time for last 1,000,000: 2s. Last read position: chr19:1,106,598
INFO 2026-06-08 09:07:46 MarkDuplicates Tracking 285367 as yet unmatched pairs. 132911 records in RAM.
INFO 2026-06-08 09:07:48 MarkDuplicates Read 534,000,000 records. Elapsed time: 00:19:10s. Time for last 1,000,000: 1s. Last read position: chr19:1,474,948
INFO 2026-06-08 09:07:48 MarkDuplicates Tracking 281583 as yet unmatched pairs. 129127 records in RAM.
INFO 2026-06-08 09:07:50 MarkDuplicates Read 535,000,000 records. Elapsed time: 00:19:12s. Time for last 1,000,000: 1s. Last read position: chr19:2,223,293
INFO 2026-06-08 09:07:50 MarkDuplicates Tracking 277812 as yet unmatched pairs. 125356 records in RAM.
INFO 2026-06-08 09:07:51 MarkDuplicates Read 536,000,000 records. Elapsed time: 00:19:13s. Time for last 1,000,000: 1s. Last read position: chr19:3,533,332
INFO 2026-06-08 09:07:51 MarkDuplicates Tracking 275283 as yet unmatched pairs. 122827 records in RAM.
INFO 2026-06-08 09:07:53 MarkDuplicates Read 537,000,000 records. Elapsed time: 00:19:15s. Time for last 1,000,000: 1s. Last read position: chr19:4,558,384
INFO 2026-06-08 09:07:53 MarkDuplicates Tracking 272043 as yet unmatched pairs. 119580 records in RAM.
INFO 2026-06-08 09:07:55 MarkDuplicates Read 538,000,000 records. Elapsed time: 00:19:17s. Time for last 1,000,000: 1s. Last read position: chr19:5,790,196
INFO 2026-06-08 09:07:55 MarkDuplicates Tracking 269581 as yet unmatched pairs. 117117 records in RAM.
INFO 2026-06-08 09:07:56 MarkDuplicates Read 539,000,000 records. Elapsed time: 00:19:18s. Time for last 1,000,000: 1s. Last read position: chr19:6,718,315
INFO 2026-06-08 09:07:56 MarkDuplicates Tracking 266927 as yet unmatched pairs. 114463 records in RAM.
INFO 2026-06-08 09:07:58 MarkDuplicates Read 540,000,000 records. Elapsed time: 00:19:20s. Time for last 1,000,000: 1s. Last read position: chr19:7,967,564
INFO 2026-06-08 09:07:58 MarkDuplicates Tracking 263897 as yet unmatched pairs. 111433 records in RAM.
INFO 2026-06-08 09:07:59 MarkDuplicates Read 541,000,000 records. Elapsed time: 00:19:21s. Time for last 1,000,000: 1s. Last read position: chr19:10,115,529
INFO 2026-06-08 09:07:59 MarkDuplicates Tracking 261372 as yet unmatched pairs. 108908 records in RAM.
INFO 2026-06-08 09:08:01 MarkDuplicates Read 542,000,000 records. Elapsed time: 00:19:24s. Time for last 1,000,000: 2s. Last read position: chr19:10,654,417
INFO 2026-06-08 09:08:01 MarkDuplicates Tracking 258294 as yet unmatched pairs. 105830 records in RAM.
INFO 2026-06-08 09:08:03 MarkDuplicates Read 543,000,000 records. Elapsed time: 00:19:25s. Time for last 1,000,000: 1s. Last read position: chr19:11,236,562
INFO 2026-06-08 09:08:03 MarkDuplicates Tracking 256038 as yet unmatched pairs. 103574 records in RAM.
INFO 2026-06-08 09:08:05 MarkDuplicates Read 544,000,000 records. Elapsed time: 00:19:27s. Time for last 1,000,000: 1s. Last read position: chr19:12,734,379
INFO 2026-06-08 09:08:05 MarkDuplicates Tracking 255319 as yet unmatched pairs. 102854 records in RAM.
INFO 2026-06-08 09:08:07 MarkDuplicates Read 545,000,000 records. Elapsed time: 00:19:29s. Time for last 1,000,000: 2s. Last read position: chr19:13,774,679
INFO 2026-06-08 09:08:07 MarkDuplicates Tracking 250911 as yet unmatched pairs. 98446 records in RAM.
INFO 2026-06-08 09:08:09 MarkDuplicates Read 546,000,000 records. Elapsed time: 00:19:31s. Time for last 1,000,000: 1s. Last read position: chr19:14,566,822
INFO 2026-06-08 09:08:09 MarkDuplicates Tracking 248930 as yet unmatched pairs. 96464 records in RAM.
INFO 2026-06-08 09:08:10 MarkDuplicates Read 547,000,000 records. Elapsed time: 00:19:33s. Time for last 1,000,000: 1s. Last read position: chr19:15,269,017
INFO 2026-06-08 09:08:10 MarkDuplicates Tracking 245439 as yet unmatched pairs. 92973 records in RAM.
INFO 2026-06-08 09:08:12 MarkDuplicates Read 548,000,000 records. Elapsed time: 00:19:35s. Time for last 1,000,000: 1s. Last read position: chr19:17,102,430
INFO 2026-06-08 09:08:12 MarkDuplicates Tracking 242437 as yet unmatched pairs. 89970 records in RAM.
INFO 2026-06-08 09:08:14 MarkDuplicates Read 549,000,000 records. Elapsed time: 00:19:36s. Time for last 1,000,000: 1s. Last read position: chr19:17,831,236
INFO 2026-06-08 09:08:14 MarkDuplicates Tracking 239386 as yet unmatched pairs. 86918 records in RAM.
INFO 2026-06-08 09:08:16 MarkDuplicates Read 550,000,000 records. Elapsed time: 00:19:38s. Time for last 1,000,000: 1s. Last read position: chr19:18,434,261
INFO 2026-06-08 09:08:16 MarkDuplicates Tracking 235902 as yet unmatched pairs. 83422 records in RAM.
INFO 2026-06-08 09:08:17 MarkDuplicates Read 551,000,000 records. Elapsed time: 00:19:39s. Time for last 1,000,000: 1s. Last read position: chr19:19,019,170
INFO 2026-06-08 09:08:17 MarkDuplicates Tracking 233177 as yet unmatched pairs. 80696 records in RAM.
INFO 2026-06-08 09:08:19 MarkDuplicates Read 552,000,000 records. Elapsed time: 00:19:41s. Time for last 1,000,000: 1s. Last read position: chr19:30,014,992
INFO 2026-06-08 09:08:19 MarkDuplicates Tracking 230378 as yet unmatched pairs. 77896 records in RAM.
INFO 2026-06-08 09:08:21 MarkDuplicates Read 553,000,000 records. Elapsed time: 00:19:43s. Time for last 1,000,000: 1s. Last read position: chr19:34,683,145
INFO 2026-06-08 09:08:21 MarkDuplicates Tracking 227784 as yet unmatched pairs. 75298 records in RAM.
INFO 2026-06-08 09:08:22 MarkDuplicates Read 554,000,000 records. Elapsed time: 00:19:44s. Time for last 1,000,000: 1s. Last read position: chr19:35,637,450
INFO 2026-06-08 09:08:22 MarkDuplicates Tracking 224946 as yet unmatched pairs. 72460 records in RAM.
INFO 2026-06-08 09:08:24 MarkDuplicates Read 555,000,000 records. Elapsed time: 00:19:46s. Time for last 1,000,000: 1s. Last read position: chr19:37,564,961
INFO 2026-06-08 09:08:24 MarkDuplicates Tracking 221721 as yet unmatched pairs. 69235 records in RAM.
INFO 2026-06-08 09:08:26 MarkDuplicates Read 556,000,000 records. Elapsed time: 00:19:48s. Time for last 1,000,000: 1s. Last read position: chr19:38,735,313
INFO 2026-06-08 09:08:26 MarkDuplicates Tracking 219153 as yet unmatched pairs. 66654 records in RAM.
INFO 2026-06-08 09:08:28 MarkDuplicates Read 557,000,000 records. Elapsed time: 00:19:50s. Time for last 1,000,000: 2s. Last read position: chr19:39,389,190
INFO 2026-06-08 09:08:28 MarkDuplicates Tracking 217856 as yet unmatched pairs. 65351 records in RAM.
INFO 2026-06-08 09:08:30 MarkDuplicates Read 558,000,000 records. Elapsed time: 00:19:52s. Time for last 1,000,000: 1s. Last read position: chr19:39,433,756
INFO 2026-06-08 09:08:30 MarkDuplicates Tracking 231480 as yet unmatched pairs. 78975 records in RAM.
INFO 2026-06-08 09:08:31 MarkDuplicates Read 559,000,000 records. Elapsed time: 00:19:54s. Time for last 1,000,000: 1s. Last read position: chr19:39,891,733
INFO 2026-06-08 09:08:31 MarkDuplicates Tracking 213561 as yet unmatched pairs. 61056 records in RAM.
INFO 2026-06-08 09:08:33 MarkDuplicates Read 560,000,000 records. Elapsed time: 00:19:55s. Time for last 1,000,000: 1s. Last read position: chr19:40,336,312
INFO 2026-06-08 09:08:33 MarkDuplicates Tracking 209853 as yet unmatched pairs. 57348 records in RAM.
INFO 2026-06-08 09:08:35 MarkDuplicates Read 561,000,000 records. Elapsed time: 00:19:57s. Time for last 1,000,000: 1s. Last read position: chr19:40,763,022
INFO 2026-06-08 09:08:35 MarkDuplicates Tracking 206529 as yet unmatched pairs. 54024 records in RAM.
INFO 2026-06-08 09:08:36 MarkDuplicates Read 562,000,000 records. Elapsed time: 00:19:58s. Time for last 1,000,000: 1s. Last read position: chr19:41,715,769
INFO 2026-06-08 09:08:36 MarkDuplicates Tracking 206645 as yet unmatched pairs. 54138 records in RAM.
INFO 2026-06-08 09:08:38 MarkDuplicates Read 563,000,000 records. Elapsed time: 00:20:00s. Time for last 1,000,000: 1s. Last read position: chr19:41,904,948
INFO 2026-06-08 09:08:38 MarkDuplicates Tracking 203177 as yet unmatched pairs. 50670 records in RAM.
INFO 2026-06-08 09:08:40 MarkDuplicates Read 564,000,000 records. Elapsed time: 00:20:02s. Time for last 1,000,000: 1s. Last read position: chr19:42,289,396
INFO 2026-06-08 09:08:40 MarkDuplicates Tracking 200951 as yet unmatched pairs. 48442 records in RAM.
INFO 2026-06-08 09:08:41 MarkDuplicates Read 565,000,000 records. Elapsed time: 00:20:03s. Time for last 1,000,000: 1s. Last read position: chr19:43,648,923
INFO 2026-06-08 09:08:41 MarkDuplicates Tracking 198141 as yet unmatched pairs. 45628 records in RAM.
INFO 2026-06-08 09:08:43 MarkDuplicates Read 566,000,000 records. Elapsed time: 00:20:05s. Time for last 1,000,000: 1s. Last read position: chr19:44,888,150
INFO 2026-06-08 09:08:43 MarkDuplicates Tracking 193915 as yet unmatched pairs. 41402 records in RAM.
INFO 2026-06-08 09:08:44 MarkDuplicates Read 567,000,000 records. Elapsed time: 00:20:07s. Time for last 1,000,000: 1s. Last read position: chr19:45,382,543
INFO 2026-06-08 09:08:44 MarkDuplicates Tracking 190519 as yet unmatched pairs. 38006 records in RAM.
INFO 2026-06-08 09:08:46 MarkDuplicates Read 568,000,000 records. Elapsed time: 00:20:08s. Time for last 1,000,000: 1s. Last read position: chr19:46,494,974
INFO 2026-06-08 09:08:46 MarkDuplicates Tracking 187380 as yet unmatched pairs. 34867 records in RAM.
INFO 2026-06-08 09:08:48 MarkDuplicates Read 569,000,000 records. Elapsed time: 00:20:10s. Time for last 1,000,000: 1s. Last read position: chr19:47,503,442
INFO 2026-06-08 09:08:48 MarkDuplicates Tracking 185147 as yet unmatched pairs. 32633 records in RAM.
INFO 2026-06-08 09:08:50 MarkDuplicates Read 570,000,000 records. Elapsed time: 00:20:12s. Time for last 1,000,000: 2s. Last read position: chr19:48,629,144
INFO 2026-06-08 09:08:50 MarkDuplicates Tracking 182596 as yet unmatched pairs. 30082 records in RAM.
INFO 2026-06-08 09:08:52 MarkDuplicates Read 571,000,000 records. Elapsed time: 00:20:14s. Time for last 1,000,000: 1s. Last read position: chr19:49,461,709
INFO 2026-06-08 09:08:52 MarkDuplicates Tracking 179551 as yet unmatched pairs. 27037 records in RAM.
INFO 2026-06-08 09:08:53 MarkDuplicates Read 572,000,000 records. Elapsed time: 00:20:16s. Time for last 1,000,000: 1s. Last read position: chr19:49,652,743
INFO 2026-06-08 09:08:53 MarkDuplicates Tracking 177041 as yet unmatched pairs. 24527 records in RAM.
INFO 2026-06-08 09:08:55 MarkDuplicates Read 573,000,000 records. Elapsed time: 00:20:17s. Time for last 1,000,000: 1s. Last read position: chr19:50,210,421
INFO 2026-06-08 09:08:55 MarkDuplicates Tracking 173852 as yet unmatched pairs. 21338 records in RAM.
INFO 2026-06-08 09:08:57 MarkDuplicates Read 574,000,000 records. Elapsed time: 00:20:19s. Time for last 1,000,000: 1s. Last read position: chr19:52,215,832
INFO 2026-06-08 09:08:57 MarkDuplicates Tracking 171598 as yet unmatched pairs. 19084 records in RAM.
INFO 2026-06-08 09:08:58 MarkDuplicates Read 575,000,000 records. Elapsed time: 00:20:20s. Time for last 1,000,000: 1s. Last read position: chr19:54,359,996
INFO 2026-06-08 09:08:58 MarkDuplicates Tracking 168175 as yet unmatched pairs. 15661 records in RAM.
INFO 2026-06-08 09:09:00 MarkDuplicates Read 576,000,000 records. Elapsed time: 00:20:22s. Time for last 1,000,000: 1s. Last read position: chr19:55,342,287
INFO 2026-06-08 09:09:00 MarkDuplicates Tracking 165707 as yet unmatched pairs. 13193 records in RAM.
INFO 2026-06-08 09:09:02 MarkDuplicates Read 577,000,000 records. Elapsed time: 00:20:24s. Time for last 1,000,000: 1s. Last read position: chr19:55,453,233
INFO 2026-06-08 09:09:02 MarkDuplicates Tracking 163374 as yet unmatched pairs. 10860 records in RAM.
INFO 2026-06-08 09:09:03 MarkDuplicates Read 578,000,000 records. Elapsed time: 00:20:25s. Time for last 1,000,000: 1s. Last read position: chr19:55,688,951
INFO 2026-06-08 09:09:03 MarkDuplicates Tracking 161139 as yet unmatched pairs. 8625 records in RAM.
INFO 2026-06-08 09:09:05 MarkDuplicates Read 579,000,000 records. Elapsed time: 00:20:27s. Time for last 1,000,000: 1s. Last read position: chr19:57,620,178
INFO 2026-06-08 09:09:05 MarkDuplicates Tracking 156607 as yet unmatched pairs. 4093 records in RAM.
INFO 2026-06-08 09:09:06 MarkDuplicates Read 580,000,000 records. Elapsed time: 00:20:28s. Time for last 1,000,000: 1s. Last read position: chr19:58,394,501
INFO 2026-06-08 09:09:06 MarkDuplicates Tracking 156228 as yet unmatched pairs. 3712 records in RAM.
INFO 2026-06-08 09:09:08 MarkDuplicates Read 581,000,000 records. Elapsed time: 00:20:30s. Time for last 1,000,000: 2s. Last read position: chr20:1,611,603
INFO 2026-06-08 09:09:08 MarkDuplicates Tracking 151303 as yet unmatched pairs. 40632 records in RAM.
INFO 2026-06-08 09:09:10 MarkDuplicates Read 582,000,000 records. Elapsed time: 00:20:32s. Time for last 1,000,000: 1s. Last read position: chr20:3,858,877
INFO 2026-06-08 09:09:10 MarkDuplicates Tracking 148681 as yet unmatched pairs. 38009 records in RAM.
INFO 2026-06-08 09:09:12 MarkDuplicates Read 583,000,000 records. Elapsed time: 00:20:34s. Time for last 1,000,000: 2s. Last read position: chr20:17,641,800
INFO 2026-06-08 09:09:12 MarkDuplicates Tracking 147101 as yet unmatched pairs. 36428 records in RAM.
INFO 2026-06-08 09:09:14 MarkDuplicates Read 584,000,000 records. Elapsed time: 00:20:36s. Time for last 1,000,000: 1s. Last read position: chr20:24,963,811
INFO 2026-06-08 09:09:14 MarkDuplicates Tracking 143666 as yet unmatched pairs. 32991 records in RAM.
INFO 2026-06-08 09:09:15 MarkDuplicates Read 585,000,000 records. Elapsed time: 00:20:37s. Time for last 1,000,000: 1s. Last read position: chr20:32,447,773
INFO 2026-06-08 09:09:15 MarkDuplicates Tracking 141103 as yet unmatched pairs. 30428 records in RAM.
INFO 2026-06-08 09:09:17 MarkDuplicates Read 586,000,000 records. Elapsed time: 00:20:39s. Time for last 1,000,000: 1s. Last read position: chr20:35,462,503
INFO 2026-06-08 09:09:17 MarkDuplicates Tracking 138433 as yet unmatched pairs. 27758 records in RAM.
INFO 2026-06-08 09:09:19 MarkDuplicates Read 587,000,000 records. Elapsed time: 00:20:41s. Time for last 1,000,000: 1s. Last read position: chr20:37,184,179
INFO 2026-06-08 09:09:19 MarkDuplicates Tracking 137055 as yet unmatched pairs. 26380 records in RAM.
INFO 2026-06-08 09:09:20 MarkDuplicates Read 588,000,000 records. Elapsed time: 00:20:42s. Time for last 1,000,000: 1s. Last read position: chr20:41,489,991
INFO 2026-06-08 09:09:20 MarkDuplicates Tracking 133291 as yet unmatched pairs. 22616 records in RAM.
INFO 2026-06-08 09:09:22 MarkDuplicates Read 589,000,000 records. Elapsed time: 00:20:44s. Time for last 1,000,000: 1s. Last read position: chr20:45,899,500
INFO 2026-06-08 09:09:22 MarkDuplicates Tracking 131097 as yet unmatched pairs. 20422 records in RAM.
INFO 2026-06-08 09:09:23 MarkDuplicates Read 590,000,000 records. Elapsed time: 00:20:45s. Time for last 1,000,000: 1s. Last read position: chr20:49,221,530
INFO 2026-06-08 09:09:23 MarkDuplicates Tracking 128516 as yet unmatched pairs. 17840 records in RAM.
INFO 2026-06-08 09:09:25 MarkDuplicates Read 591,000,000 records. Elapsed time: 00:20:47s. Time for last 1,000,000: 1s. Last read position: chr20:53,582,531
INFO 2026-06-08 09:09:25 MarkDuplicates Tracking 125967 as yet unmatched pairs. 15291 records in RAM.
INFO 2026-06-08 09:09:27 MarkDuplicates Read 592,000,000 records. Elapsed time: 00:20:49s. Time for last 1,000,000: 1s. Last read position: chr20:62,064,560
INFO 2026-06-08 09:09:27 MarkDuplicates Tracking 123296 as yet unmatched pairs. 12618 records in RAM.
INFO 2026-06-08 09:09:28 MarkDuplicates Read 593,000,000 records. Elapsed time: 00:20:50s. Time for last 1,000,000: 1s. Last read position: chr20:62,326,676
INFO 2026-06-08 09:09:28 MarkDuplicates Tracking 121217 as yet unmatched pairs. 10539 records in RAM.
INFO 2026-06-08 09:09:30 MarkDuplicates Read 594,000,000 records. Elapsed time: 00:20:52s. Time for last 1,000,000: 1s. Last read position: chr20:62,667,856
INFO 2026-06-08 09:09:30 MarkDuplicates Tracking 117112 as yet unmatched pairs. 6434 records in RAM.
INFO 2026-06-08 09:09:31 MarkDuplicates Read 595,000,000 records. Elapsed time: 00:20:54s. Time for last 1,000,000: 1s. Last read position: chr20:63,564,132
INFO 2026-06-08 09:09:31 MarkDuplicates Tracking 114509 as yet unmatched pairs. 3831 records in RAM.
INFO 2026-06-08 09:09:33 MarkDuplicates Read 596,000,000 records. Elapsed time: 00:20:55s. Time for last 1,000,000: 1s. Last read position: chr20:64,048,247
INFO 2026-06-08 09:09:33 MarkDuplicates Tracking 111437 as yet unmatched pairs. 759 records in RAM.
INFO 2026-06-08 09:09:35 MarkDuplicates Read 597,000,000 records. Elapsed time: 00:20:57s. Time for last 1,000,000: 1s. Last read position: chr21:8,256,092
INFO 2026-06-08 09:09:35 MarkDuplicates Tracking 109281 as yet unmatched pairs. 17450 records in RAM.
INFO 2026-06-08 09:09:36 MarkDuplicates Read 598,000,000 records. Elapsed time: 00:20:58s. Time for last 1,000,000: 1s. Last read position: chr21:8,443,264
INFO 2026-06-08 09:09:36 MarkDuplicates Tracking 109291 as yet unmatched pairs. 17451 records in RAM.
INFO 2026-06-08 09:09:38 MarkDuplicates Read 599,000,000 records. Elapsed time: 00:21:00s. Time for last 1,000,000: 1s. Last read position: chr21:31,671,966
INFO 2026-06-08 09:09:38 MarkDuplicates Tracking 106137 as yet unmatched pairs. 14291 records in RAM.
INFO 2026-06-08 09:09:39 MarkDuplicates Read 600,000,000 records. Elapsed time: 00:21:01s. Time for last 1,000,000: 1s. Last read position: chr21:36,070,218
INFO 2026-06-08 09:09:39 MarkDuplicates Tracking 104145 as yet unmatched pairs. 12299 records in RAM.
INFO 2026-06-08 09:09:41 MarkDuplicates Read 601,000,000 records. Elapsed time: 00:21:03s. Time for last 1,000,000: 1s. Last read position: chr21:42,346,503
INFO 2026-06-08 09:09:41 MarkDuplicates Tracking 103230 as yet unmatched pairs. 11384 records in RAM.
INFO 2026-06-08 09:09:42 MarkDuplicates Read 602,000,000 records. Elapsed time: 00:21:04s. Time for last 1,000,000: 1s. Last read position: chr21:44,851,530
INFO 2026-06-08 09:09:42 MarkDuplicates Tracking 99839 as yet unmatched pairs. 7993 records in RAM.
INFO 2026-06-08 09:09:44 MarkDuplicates Read 603,000,000 records. Elapsed time: 00:21:06s. Time for last 1,000,000: 1s. Last read position: chr21:45,896,104
INFO 2026-06-08 09:09:44 MarkDuplicates Tracking 95736 as yet unmatched pairs. 3890 records in RAM.
INFO 2026-06-08 09:09:46 MarkDuplicates Read 604,000,000 records. Elapsed time: 00:21:08s. Time for last 1,000,000: 1s. Last read position: chr21:46,215,189
INFO 2026-06-08 09:09:46 MarkDuplicates Tracking 93258 as yet unmatched pairs. 1412 records in RAM.
INFO 2026-06-08 09:09:48 MarkDuplicates Read 605,000,000 records. Elapsed time: 00:21:10s. Time for last 1,000,000: 1s. Last read position: chr22:19,176,668
INFO 2026-06-08 09:09:48 MarkDuplicates Tracking 90729 as yet unmatched pairs. 46812 records in RAM.
INFO 2026-06-08 09:09:49 MarkDuplicates Read 606,000,000 records. Elapsed time: 00:21:11s. Time for last 1,000,000: 1s. Last read position: chr22:20,813,435
INFO 2026-06-08 09:09:49 MarkDuplicates Tracking 88067 as yet unmatched pairs. 44150 records in RAM.
INFO 2026-06-08 09:09:51 MarkDuplicates Read 607,000,000 records. Elapsed time: 00:21:13s. Time for last 1,000,000: 1s. Last read position: chr22:23,181,935
INFO 2026-06-08 09:09:51 MarkDuplicates Tracking 85453 as yet unmatched pairs. 41536 records in RAM.
INFO 2026-06-08 09:09:52 MarkDuplicates Read 608,000,000 records. Elapsed time: 00:21:14s. Time for last 1,000,000: 1s. Last read position: chr22:24,171,811
INFO 2026-06-08 09:09:52 MarkDuplicates Tracking 82986 as yet unmatched pairs. 39069 records in RAM.
INFO 2026-06-08 09:09:54 MarkDuplicates Read 609,000,000 records. Elapsed time: 00:21:16s. Time for last 1,000,000: 1s. Last read position: chr22:28,795,686
INFO 2026-06-08 09:09:54 MarkDuplicates Tracking 86540 as yet unmatched pairs. 42623 records in RAM.
INFO 2026-06-08 09:09:56 MarkDuplicates Read 610,000,000 records. Elapsed time: 00:21:18s. Time for last 1,000,000: 1s. Last read position: chr22:29,341,693
INFO 2026-06-08 09:09:56 MarkDuplicates Tracking 77506 as yet unmatched pairs. 33588 records in RAM.
INFO 2026-06-08 09:09:57 MarkDuplicates Read 611,000,000 records. Elapsed time: 00:21:19s. Time for last 1,000,000: 1s. Last read position: chr22:31,100,918
INFO 2026-06-08 09:09:57 MarkDuplicates Tracking 75228 as yet unmatched pairs. 31310 records in RAM.
INFO 2026-06-08 09:09:59 MarkDuplicates Read 612,000,000 records. Elapsed time: 00:21:21s. Time for last 1,000,000: 1s. Last read position: chr22:36,141,577
INFO 2026-06-08 09:09:59 MarkDuplicates Tracking 72686 as yet unmatched pairs. 28768 records in RAM.
INFO 2026-06-08 09:10:01 MarkDuplicates Read 613,000,000 records. Elapsed time: 00:21:23s. Time for last 1,000,000: 1s. Last read position: chr22:36,758,232
INFO 2026-06-08 09:10:01 MarkDuplicates Tracking 69563 as yet unmatched pairs. 25645 records in RAM.
INFO 2026-06-08 09:10:02 MarkDuplicates Read 614,000,000 records. Elapsed time: 00:21:24s. Time for last 1,000,000: 1s. Last read position: chr22:37,678,626
INFO 2026-06-08 09:10:02 MarkDuplicates Tracking 68150 as yet unmatched pairs. 24232 records in RAM.
INFO 2026-06-08 09:10:04 MarkDuplicates Read 615,000,000 records. Elapsed time: 00:21:26s. Time for last 1,000,000: 1s. Last read position: chr22:38,499,451
INFO 2026-06-08 09:10:04 MarkDuplicates Tracking 65348 as yet unmatched pairs. 21430 records in RAM.
INFO 2026-06-08 09:10:06 MarkDuplicates Read 616,000,000 records. Elapsed time: 00:21:28s. Time for last 1,000,000: 1s. Last read position: chr22:39,969,521
INFO 2026-06-08 09:10:06 MarkDuplicates Tracking 61624 as yet unmatched pairs. 17706 records in RAM.
INFO 2026-06-08 09:10:07 MarkDuplicates Read 617,000,000 records. Elapsed time: 00:21:29s. Time for last 1,000,000: 1s. Last read position: chr22:41,436,969
INFO 2026-06-08 09:10:07 MarkDuplicates Tracking 60360 as yet unmatched pairs. 16442 records in RAM.
INFO 2026-06-08 09:10:09 MarkDuplicates Read 618,000,000 records. Elapsed time: 00:21:31s. Time for last 1,000,000: 1s. Last read position: chr22:42,385,188
INFO 2026-06-08 09:10:09 MarkDuplicates Tracking 56664 as yet unmatched pairs. 12746 records in RAM.
INFO 2026-06-08 09:10:10 MarkDuplicates Read 619,000,000 records. Elapsed time: 00:21:33s. Time for last 1,000,000: 1s. Last read position: chr22:45,806,974
INFO 2026-06-08 09:10:10 MarkDuplicates Tracking 53930 as yet unmatched pairs. 10012 records in RAM.
INFO 2026-06-08 09:10:12 MarkDuplicates Read 620,000,000 records. Elapsed time: 00:21:34s. Time for last 1,000,000: 1s. Last read position: chr22:50,218,740
INFO 2026-06-08 09:10:12 MarkDuplicates Tracking 51168 as yet unmatched pairs. 7250 records in RAM.
INFO 2026-06-08 09:10:14 MarkDuplicates Read 621,000,000 records. Elapsed time: 00:21:36s. Time for last 1,000,000: 1s. Last read position: chr22:50,460,580
INFO 2026-06-08 09:10:14 MarkDuplicates Tracking 48956 as yet unmatched pairs. 5038 records in RAM.
INFO 2026-06-08 09:10:15 MarkDuplicates Read 622,000,000 records. Elapsed time: 00:21:37s. Time for last 1,000,000: 1s. Last read position: chr22:50,704,221
INFO 2026-06-08 09:10:15 MarkDuplicates Tracking 44671 as yet unmatched pairs. 753 records in RAM.
INFO 2026-06-08 09:10:17 MarkDuplicates Read 623,000,000 records. Elapsed time: 00:21:39s. Time for last 1,000,000: 1s. Last read position: chrX:3,317,166
INFO 2026-06-08 09:10:17 MarkDuplicates Tracking 43295 as yet unmatched pairs. 37715 records in RAM.
INFO 2026-06-08 09:10:19 MarkDuplicates Read 624,000,000 records. Elapsed time: 00:21:41s. Time for last 1,000,000: 1s. Last read position: chrX:13,734,995
INFO 2026-06-08 09:10:19 MarkDuplicates Tracking 39895 as yet unmatched pairs. 34315 records in RAM.
INFO 2026-06-08 09:10:20 MarkDuplicates Read 625,000,000 records. Elapsed time: 00:21:42s. Time for last 1,000,000: 1s. Last read position: chrX:24,179,245
INFO 2026-06-08 09:10:20 MarkDuplicates Tracking 37353 as yet unmatched pairs. 31770 records in RAM.
INFO 2026-06-08 09:10:22 MarkDuplicates Read 626,000,000 records. Elapsed time: 00:21:44s. Time for last 1,000,000: 1s. Last read position: chrX:41,343,788
INFO 2026-06-08 09:10:22 MarkDuplicates Tracking 35532 as yet unmatched pairs. 29949 records in RAM.
INFO 2026-06-08 09:10:24 MarkDuplicates Read 627,000,000 records. Elapsed time: 00:21:46s. Time for last 1,000,000: 1s. Last read position: chrX:47,584,955
INFO 2026-06-08 09:10:24 MarkDuplicates Tracking 34070 as yet unmatched pairs. 28486 records in RAM.
INFO 2026-06-08 09:10:25 MarkDuplicates Read 628,000,000 records. Elapsed time: 00:21:47s. Time for last 1,000,000: 1s. Last read position: chrX:49,039,331
INFO 2026-06-08 09:10:25 MarkDuplicates Tracking 30666 as yet unmatched pairs. 25082 records in RAM.
INFO 2026-06-08 09:10:27 MarkDuplicates Read 629,000,000 records. Elapsed time: 00:21:49s. Time for last 1,000,000: 1s. Last read position: chrX:53,412,093
INFO 2026-06-08 09:10:27 MarkDuplicates Tracking 27466 as yet unmatched pairs. 21882 records in RAM.
INFO 2026-06-08 09:10:28 MarkDuplicates Read 630,000,000 records. Elapsed time: 00:21:51s. Time for last 1,000,000: 1s. Last read position: chrX:57,593,522
INFO 2026-06-08 09:10:28 MarkDuplicates Tracking 24694 as yet unmatched pairs. 19110 records in RAM.
INFO 2026-06-08 09:10:30 MarkDuplicates Read 631,000,000 records. Elapsed time: 00:21:52s. Time for last 1,000,000: 1s. Last read position: chrX:71,375,241
INFO 2026-06-08 09:10:30 MarkDuplicates Tracking 22896 as yet unmatched pairs. 17312 records in RAM.
INFO 2026-06-08 09:10:32 MarkDuplicates Read 632,000,000 records. Elapsed time: 00:21:54s. Time for last 1,000,000: 1s. Last read position: chrX:78,104,376
INFO 2026-06-08 09:10:32 MarkDuplicates Tracking 21377 as yet unmatched pairs. 15793 records in RAM.
INFO 2026-06-08 09:10:33 MarkDuplicates Read 633,000,000 records. Elapsed time: 00:21:55s. Time for last 1,000,000: 1s. Last read position: chrX:108,202,943
INFO 2026-06-08 09:10:33 MarkDuplicates Tracking 18051 as yet unmatched pairs. 12467 records in RAM.
INFO 2026-06-08 09:10:35 MarkDuplicates Read 634,000,000 records. Elapsed time: 00:21:57s. Time for last 1,000,000: 2s. Last read position: chrX:129,562,650
INFO 2026-06-08 09:10:35 MarkDuplicates Tracking 15905 as yet unmatched pairs. 10321 records in RAM.
INFO 2026-06-08 09:10:37 MarkDuplicates Read 635,000,000 records. Elapsed time: 00:21:59s. Time for last 1,000,000: 1s. Last read position: chrX:150,814,908
INFO 2026-06-08 09:10:37 MarkDuplicates Tracking 13949 as yet unmatched pairs. 8365 records in RAM.
INFO 2026-06-08 09:10:39 MarkDuplicates Read 636,000,000 records. Elapsed time: 00:22:01s. Time for last 1,000,000: 2s. Last read position: chrX:153,957,342
INFO 2026-06-08 09:10:39 MarkDuplicates Tracking 11457 as yet unmatched pairs. 5873 records in RAM.
INFO 2026-06-08 09:10:41 MarkDuplicates Read 637,000,000 records. Elapsed time: 00:22:03s. Time for last 1,000,000: 2s. Last read position: chrX:154,364,696
INFO 2026-06-08 09:10:41 MarkDuplicates Tracking 10032 as yet unmatched pairs. 4448 records in RAM.
INFO 2026-06-08 09:10:43 MarkDuplicates Read 638,000,000 records. Elapsed time: 00:22:05s. Time for last 1,000,000: 1s. Last read position: chrX:155,382,562
INFO 2026-06-08 09:10:43 MarkDuplicates Tracking 5691 as yet unmatched pairs. 107 records in RAM.
INFO 2026-06-08 09:10:44 MarkDuplicates Read 639,000,000 records. Elapsed time: 00:22:06s. Time for last 1,000,000: 1s. Last read position: GL000220.1:158,127
INFO 2026-06-08 09:10:44 MarkDuplicates Tracking 3374 as yet unmatched pairs. 89 records in RAM.
INFO 2026-06-08 09:10:45 MarkDuplicates Read 640,000,000 records. Elapsed time: 00:22:07s. Time for last 1,000,000: 1s. Last read position: KI270733.1:133,628
INFO 2026-06-08 09:10:45 MarkDuplicates Tracking 1126 as yet unmatched pairs. 1067 records in RAM.
INFO 2026-06-08 09:10:46 MarkDuplicates Read 640655122 records. 0 pairs never matched.
INFO 2026-06-08 09:11:42 MarkDuplicates After buildSortedReadEndLists freeMemory: 204143376; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:11:42 MarkDuplicates Will retain up to 1987051520 duplicate indices before spilling to disk.
INFO 2026-06-08 09:11:50 MarkDuplicates Traversing read pair information and detecting duplicates.
WARNING 2026-06-08 09:11:50 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 09:12:34 OpticalDuplicateFinder Large duplicate set. size = 1098
INFO 2026-06-08 09:12:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,134
INFO 2026-06-08 09:12:35 OpticalDuplicateFinder Large duplicate set. size = 1148
INFO 2026-06-08 09:12:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,115
INFO 2026-06-08 09:12:35 OpticalDuplicateFinder Large duplicate set. size = 1122
INFO 2026-06-08 09:12:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,005
INFO 2026-06-08 09:12:42 OpticalDuplicateFinder Large duplicate set. size = 1034
INFO 2026-06-08 09:12:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,004
INFO 2026-06-08 09:13:34 MarkDuplicates Traversing fragment information and detecting duplicates.
WARNING 2026-06-08 09:13:34 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 09:14:37 MarkDuplicates Sorting list of duplicate records.
INFO 2026-06-08 09:14:42 MarkDuplicates After generateDuplicateIndexes freeMemory: 104685152; totalMemory: 134217728; maxMemory: 63585648640
INFO 2026-06-08 09:14:42 MarkDuplicates Marking 361609586 records as duplicates.
INFO 2026-06-08 09:14:42 MarkDuplicates Found 30814164 optical duplicate clusters.
INFO 2026-06-08 09:14:42 MarkDuplicates Reads are assumed to be ordered by: coordinate
INFO 2026-06-08 09:14:59 MarkDuplicates Written 10,000,000 records. Elapsed time: 00:00:17s. Time for last 10,000,000: 17s. Last read position: chr1:21,861,800
INFO 2026-06-08 09:15:18 MarkDuplicates Written 20,000,000 records. Elapsed time: 00:00:36s. Time for last 10,000,000: 18s. Last read position: chr1:43,605,222
INFO 2026-06-08 09:15:42 MarkDuplicates Written 30,000,000 records. Elapsed time: 00:00:59s. Time for last 10,000,000: 23s. Last read position: chr1:120,453,427
INFO 2026-06-08 09:16:02 MarkDuplicates Written 40,000,000 records. Elapsed time: 00:01:19s. Time for last 10,000,000: 19s. Last read position: chr1:154,990,347
INFO 2026-06-08 09:16:24 MarkDuplicates Written 50,000,000 records. Elapsed time: 00:01:42s. Time for last 10,000,000: 22s. Last read position: chr1:171,557,581
INFO 2026-06-08 09:16:47 MarkDuplicates Written 60,000,000 records. Elapsed time: 00:02:05s. Time for last 10,000,000: 23s. Last read position: chr1:228,304,409
INFO 2026-06-08 09:17:04 MarkDuplicates Written 70,000,000 records. Elapsed time: 00:02:21s. Time for last 10,000,000: 16s. Last read position: chr2:32,916,406
INFO 2026-06-08 09:17:20 MarkDuplicates Written 80,000,000 records. Elapsed time: 00:02:37s. Time for last 10,000,000: 15s. Last read position: chr2:79,120,505
INFO 2026-06-08 09:17:36 MarkDuplicates Written 90,000,000 records. Elapsed time: 00:02:53s. Time for last 10,000,000: 15s. Last read position: chr2:151,671,050
INFO 2026-06-08 09:17:52 MarkDuplicates Written 100,000,000 records. Elapsed time: 00:03:09s. Time for last 10,000,000: 15s. Last read position: chr2:218,642,476
INFO 2026-06-08 09:18:08 MarkDuplicates Written 110,000,000 records. Elapsed time: 00:03:25s. Time for last 10,000,000: 15s. Last read position: chr3:28,324,381
INFO 2026-06-08 09:18:23 MarkDuplicates Written 120,000,000 records. Elapsed time: 00:03:40s. Time for last 10,000,000: 15s. Last read position: chr3:56,566,887
INFO 2026-06-08 09:18:39 MarkDuplicates Written 130,000,000 records. Elapsed time: 00:03:56s. Time for last 10,000,000: 15s. Last read position: chr3:155,144,366
INFO 2026-06-08 09:18:55 MarkDuplicates Written 140,000,000 records. Elapsed time: 00:04:12s. Time for last 10,000,000: 15s. Last read position: chr4:2,261,746
INFO 2026-06-08 09:19:10 MarkDuplicates Written 150,000,000 records. Elapsed time: 00:04:27s. Time for last 10,000,000: 15s. Last read position: chr4:124,669,811
INFO 2026-06-08 09:19:26 MarkDuplicates Written 160,000,000 records. Elapsed time: 00:04:43s. Time for last 10,000,000: 15s. Last read position: chr5:73,505,292
INFO 2026-06-08 09:19:41 MarkDuplicates Written 170,000,000 records. Elapsed time: 00:04:58s. Time for last 10,000,000: 15s. Last read position: chr5:150,405,140
INFO 2026-06-08 09:19:56 MarkDuplicates Written 180,000,000 records. Elapsed time: 00:05:14s. Time for last 10,000,000: 15s. Last read position: chr6:7,248,820
INFO 2026-06-08 09:20:12 MarkDuplicates Written 190,000,000 records. Elapsed time: 00:05:29s. Time for last 10,000,000: 15s. Last read position: chr6:32,443,341
INFO 2026-06-08 09:20:27 MarkDuplicates Written 200,000,000 records. Elapsed time: 00:05:45s. Time for last 10,000,000: 15s. Last read position: chr6:99,410,904
INFO 2026-06-08 09:20:43 MarkDuplicates Written 210,000,000 records. Elapsed time: 00:06:00s. Time for last 10,000,000: 15s. Last read position: chr7:2,543,218
INFO 2026-06-08 09:20:59 MarkDuplicates Written 220,000,000 records. Elapsed time: 00:06:16s. Time for last 10,000,000: 15s. Last read position: chr7:73,050,442
INFO 2026-06-08 09:21:14 MarkDuplicates Written 230,000,000 records. Elapsed time: 00:06:32s. Time for last 10,000,000: 15s. Last read position: chr7:105,111,988
INFO 2026-06-08 09:21:30 MarkDuplicates Written 240,000,000 records. Elapsed time: 00:06:47s. Time for last 10,000,000: 15s. Last read position: chr8:30,063,901
INFO 2026-06-08 09:21:46 MarkDuplicates Written 250,000,000 records. Elapsed time: 00:07:03s. Time for last 10,000,000: 15s. Last read position: chr8:140,789,481
INFO 2026-06-08 09:22:01 MarkDuplicates Written 260,000,000 records. Elapsed time: 00:07:18s. Time for last 10,000,000: 15s. Last read position: chr9:35,057,040
INFO 2026-06-08 09:22:17 MarkDuplicates Written 270,000,000 records. Elapsed time: 00:07:34s. Time for last 10,000,000: 15s. Last read position: chr9:128,185,766
INFO 2026-06-08 09:22:32 MarkDuplicates Written 280,000,000 records. Elapsed time: 00:07:49s. Time for last 10,000,000: 15s. Last read position: chr10:15,128,368
INFO 2026-06-08 09:22:48 MarkDuplicates Written 290,000,000 records. Elapsed time: 00:08:05s. Time for last 10,000,000: 15s. Last read position: chr10:95,868,747
INFO 2026-06-08 09:23:03 MarkDuplicates Written 300,000,000 records. Elapsed time: 00:08:21s. Time for last 10,000,000: 15s. Last read position: chr11:1,019,303
INFO 2026-06-08 09:23:19 MarkDuplicates Written 310,000,000 records. Elapsed time: 00:08:36s. Time for last 10,000,000: 15s. Last read position: chr11:1,243,474
INFO 2026-06-08 09:23:33 MarkDuplicates Written 320,000,000 records. Elapsed time: 00:08:51s. Time for last 10,000,000: 14s. Last read position: chr11:1,247,836
INFO 2026-06-08 09:23:48 MarkDuplicates Written 330,000,000 records. Elapsed time: 00:09:05s. Time for last 10,000,000: 14s. Last read position: chr11:6,547,250
INFO 2026-06-08 09:24:04 MarkDuplicates Written 340,000,000 records. Elapsed time: 00:09:21s. Time for last 10,000,000: 15s. Last read position: chr11:62,775,791
INFO 2026-06-08 09:24:19 MarkDuplicates Written 350,000,000 records. Elapsed time: 00:09:36s. Time for last 10,000,000: 15s. Last read position: chr11:72,225,082
INFO 2026-06-08 09:24:35 MarkDuplicates Written 360,000,000 records. Elapsed time: 00:09:52s. Time for last 10,000,000: 15s. Last read position: chr12:2,885,470
INFO 2026-06-08 09:24:50 MarkDuplicates Written 370,000,000 records. Elapsed time: 00:10:07s. Time for last 10,000,000: 15s. Last read position: chr12:49,634,022
INFO 2026-06-08 09:25:06 MarkDuplicates Written 380,000,000 records. Elapsed time: 00:10:23s. Time for last 10,000,000: 15s. Last read position: chr12:64,759,086
INFO 2026-06-08 09:25:21 MarkDuplicates Written 390,000,000 records. Elapsed time: 00:10:39s. Time for last 10,000,000: 15s. Last read position: chr12:120,565,145
INFO 2026-06-08 09:25:37 MarkDuplicates Written 400,000,000 records. Elapsed time: 00:10:55s. Time for last 10,000,000: 15s. Last read position: chr13:110,492,116
INFO 2026-06-08 09:25:53 MarkDuplicates Written 410,000,000 records. Elapsed time: 00:11:10s. Time for last 10,000,000: 15s. Last read position: chr14:70,730,633
INFO 2026-06-08 09:26:09 MarkDuplicates Written 420,000,000 records. Elapsed time: 00:11:26s. Time for last 10,000,000: 15s. Last read position: chr14:105,668,135
INFO 2026-06-08 09:26:24 MarkDuplicates Written 430,000,000 records. Elapsed time: 00:11:41s. Time for last 10,000,000: 15s. Last read position: chr15:43,671,012
INFO 2026-06-08 09:26:40 MarkDuplicates Written 440,000,000 records. Elapsed time: 00:11:57s. Time for last 10,000,000: 15s. Last read position: chr15:84,657,177
INFO 2026-06-08 09:26:56 MarkDuplicates Written 450,000,000 records. Elapsed time: 00:12:13s. Time for last 10,000,000: 15s. Last read position: chr16:3,020,440
INFO 2026-06-08 09:27:12 MarkDuplicates Written 460,000,000 records. Elapsed time: 00:12:29s. Time for last 10,000,000: 15s. Last read position: chr16:22,519,176
INFO 2026-06-08 09:27:27 MarkDuplicates Written 470,000,000 records. Elapsed time: 00:12:45s. Time for last 10,000,000: 15s. Last read position: chr16:55,485,635
INFO 2026-06-08 09:27:43 MarkDuplicates Written 480,000,000 records. Elapsed time: 00:13:00s. Time for last 10,000,000: 15s. Last read position: chr16:89,645,987
INFO 2026-06-08 09:27:59 MarkDuplicates Written 490,000,000 records. Elapsed time: 00:13:16s. Time for last 10,000,000: 15s. Last read position: chr17:17,158,925
INFO 2026-06-08 09:28:14 MarkDuplicates Written 500,000,000 records. Elapsed time: 00:13:32s. Time for last 10,000,000: 15s. Last read position: chr17:41,764,964
INFO 2026-06-08 09:28:30 MarkDuplicates Written 510,000,000 records. Elapsed time: 00:13:47s. Time for last 10,000,000: 15s. Last read position: chr17:50,198,160
INFO 2026-06-08 09:28:46 MarkDuplicates Written 520,000,000 records. Elapsed time: 00:14:03s. Time for last 10,000,000: 15s. Last read position: chr17:77,487,481
INFO 2026-06-08 09:29:01 MarkDuplicates Written 530,000,000 records. Elapsed time: 00:14:19s. Time for last 10,000,000: 15s. Last read position: chr18:57,613,658
INFO 2026-06-08 09:29:17 MarkDuplicates Written 540,000,000 records. Elapsed time: 00:14:34s. Time for last 10,000,000: 15s. Last read position: chr19:7,967,564
INFO 2026-06-08 09:29:32 MarkDuplicates Written 550,000,000 records. Elapsed time: 00:14:50s. Time for last 10,000,000: 15s. Last read position: chr19:18,434,261
INFO 2026-06-08 09:29:48 MarkDuplicates Written 560,000,000 records. Elapsed time: 00:15:05s. Time for last 10,000,000: 15s. Last read position: chr19:40,336,312
INFO 2026-06-08 09:30:03 MarkDuplicates Written 570,000,000 records. Elapsed time: 00:15:20s. Time for last 10,000,000: 15s. Last read position: chr19:48,629,144
INFO 2026-06-08 09:30:18 MarkDuplicates Written 580,000,000 records. Elapsed time: 00:15:35s. Time for last 10,000,000: 15s. Last read position: chr19:58,394,501
INFO 2026-06-08 09:30:34 MarkDuplicates Written 590,000,000 records. Elapsed time: 00:15:51s. Time for last 10,000,000: 15s. Last read position: chr20:49,221,530
INFO 2026-06-08 09:30:49 MarkDuplicates Written 600,000,000 records. Elapsed time: 00:16:06s. Time for last 10,000,000: 15s. Last read position: chr21:36,070,218
INFO 2026-06-08 09:31:04 MarkDuplicates Written 610,000,000 records. Elapsed time: 00:16:21s. Time for last 10,000,000: 15s. Last read position: chr22:29,341,693
INFO 2026-06-08 09:31:20 MarkDuplicates Written 620,000,000 records. Elapsed time: 00:16:37s. Time for last 10,000,000: 15s. Last read position: chr22:50,218,740
INFO 2026-06-08 09:31:35 MarkDuplicates Written 630,000,000 records. Elapsed time: 00:16:52s. Time for last 10,000,000: 15s. Last read position: chrX:57,593,522
INFO 2026-06-08 09:31:50 MarkDuplicates Written 640,000,000 records. Elapsed time: 00:17:07s. Time for last 10,000,000: 15s. Last read position: KI270733.1:133,628
INFO 2026-06-08 09:32:00 MarkDuplicates Writing complete. Closing input iterator.
INFO 2026-06-08 09:32:00 MarkDuplicates Duplicate Index cleanup.
INFO 2026-06-08 09:32:00 MarkDuplicates Getting Memory Stats.
INFO 2026-06-08 09:32:00 MarkDuplicates Before output close freeMemory: 204000192; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:32:00 MarkDuplicates Closed outputs. Getting more Memory Stats.
INFO 2026-06-08 09:32:00 MarkDuplicates After output close freeMemory: 104222336; totalMemory: 134217728; maxMemory: 63585648640
[Mon Jun 08 09:32:00 GMT 2026] picard.sam.markduplicates.MarkDuplicates done. Elapsed time: 43.41 minutes.
Runtime.totalMemory()=134217728
Tool returned:
0
ls: *cram: No such file or directory
ls: *.crai: No such file or directory