Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bc/3b2b87c1d1fd19960ba70a267d558f/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/77/e1f3a1712b5090e567b0d600f63e33/tih_rna_sample_00588_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bc/3b2b87c1d1fd19960ba70a267d558f/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1c/2b18b9be298aa465f59ec7788ec288/tih_rna_sample_00588_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (4 inputs)

[W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00588_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai
Load BAM file ...  Done
report duplicte rate based on sequence ...
report duplicte rate based on mapping  ...
generate R script ...
null device 
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