Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ff/d51a14f3236721739b7bb525a8c426/tih_rna_sample_00676_B23MVV7LT4_1_2.fastp.fastq.gz Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b1/1c14e17dabeb6cd9600f3688cd1cf8/tih_rna_sample_00676_B23MVV7LT4_1.fusionreport.tsv Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0f/54a897bde2611d2690565f7ed5298c/.command.sh Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0f/54a897bde2611d2690565f7ed5298c/.command.run Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ff/d51a14f3236721739b7bb525a8c426/tih_rna_sample_00676_B23MVV7LT4_1_1.fastp.fastq.gz ==> STAGING COMPLETE (6 inputs) Running: /usr/local/src/STAR-Fusion/FusionInspector/util/fusion_pair_to_mini_genome_join.pl --fusions tih_rna_sample_00676_B23MVV7LT4_1.fusionreport.tsv --gtf /tmp/nxf.RoPOUI5bJu/ctat_genome_lib_build_dir/ref_annot.gtf --genome_fa /tmp/nxf.RoPOUI5bJu/ctat_genome_lib_build_dir/ref_genome.fa --out_prefix /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1 --shrink_introns --max_intron_length 1000 Error, strand conflict in gtf info for chr1 ENSEMBL exon 8328067 8328179 . + . gene_id "Y_RNA^ENSG00000252254.1"; transcript_id "ENST00000516445.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.681-201"; exon_number 1; exon_id "ENSE00002088722.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000252254.1"; orig_coord_info "chr1,8328067,8328179,+"; Error, strand conflict in gtf info for chr1 ENSEMBL exon 23370254 23370346 . + . gene_id "Y_RNA^ENSG00000201405.1"; transcript_id "ENST00000364535.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.249-201"; exon_number 1; exon_id "ENSE00001807756.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201405.1"; orig_coord_info "chr1,23370254,23370346,+"; Error, strand conflict in gtf info for chr1 ENSEMBL exon 25877496 25877605 . + . gene_id "Y_RNA^ENSG00000207302.1"; transcript_id "ENST00000384572.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.526-201"; exon_number 1; exon_id "ENSE00001499580.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207302.1"; orig_coord_info "chr1,25877496,25877605,+"; Error, strand conflict in gtf info for chr1 ENSEMBL exon 28985710 28985810 . + . gene_id "Y_RNA^ENSG00000206704.1"; transcript_id "ENST00000383977.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.403-201"; exon_number 1; exon_id "ENSE00001808314.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206704.1"; orig_coord_info "chr1,28985710,28985810,+"; Error, strand conflict in gtf info for chr1 ENSEMBL exon 32639951 32640052 . + . gene_id "Y_RNA^ENSG00000200591.1"; transcript_id "ENST00000363721.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.165-201"; exon_number 1; exon_id "ENSE00001808667.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200591.1"; orig_coord_info "chr1,32639951,32640052,+"; Error, strand conflict in gtf info for chr1 ENSEMBL exon 35195969 35196062 . + . gene_id "Y_RNA^ENSG00000201868.1"; transcript_id "ENST00000364998.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.303-201"; exon_number 1; exon_id "ENSE00001439761.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201868.1"; orig_coord_info "chr1,35195969,35196062,+"; Error, strand conflict in gtf info for chr1 ENSEMBL exon 51107222 51107331 . + . gene_id "Y_RNA^ENSG00000200262.1"; transcript_id "ENST00000363392.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.129-201"; exon_number 1; exon_id "ENSE00001438155.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200262.1"; orig_coord_info "chr1,51107222,51107331,+"; Error, strand conflict in gtf info for chr1 ENSEMBL exon 62211557 62211666 . + . gene_id "Y_RNA^ENSG00000200174.1"; transcript_id "ENST00000363304.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.120-201"; exon_number 1; exon_id "ENSE00001438067.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200174.1"; orig_coord_info "chr1,62211557,62211666,+"; Error, strand conflict in gtf info for chr1 ENSEMBL exon 63338263 63338372 . + . gene_id "Y_RNA^ENSG00000252784.1"; transcript_id "ENST00000516975.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.710-201"; exon_number 1; exon_id "ENSE00002089252.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000252784.1"; orig_coord_info "chr1,63338263,63338372,+"; Error, strand conflict in gtf info for chr1 ENSEMBL exon 85264296 85264402 . + . gene_id "Y_RNA^ENSG00000223254.1"; transcript_id "ENST00000411322.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.627-201"; exon_number 1; exon_id "ENSE00001591140.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000223254.1"; orig_coord_info "chr1,85264296,85264402,+"; Error, strand conflict in gtf info for chr1 ENSEMBL exon 91261625 91261724 . + . gene_id "Y_RNA^ENSG00000206817.1"; transcript_id "ENST00000384090.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.434-201"; exon_number 1; exon_id "ENSE00001499100.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206817.1"; orig_coord_info "chr1,91261625,91261724,+"; Error, strand conflict in gtf info for chr1 ENSEMBL exon 93385711 93385817 . + . gene_id "Y_RNA^ENSG00000207379.1"; transcript_id "ENST00000384649.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.543-201"; exon_number 1; exon_id "ENSE00001499657.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207379.1"; orig_coord_info "chr1,93385711,93385817,+"; Error, strand conflict in gtf info for chr1 ENSEMBL exon 99791662 99791753 . + . gene_id "Y_RNA^ENSG00000202254.1"; transcript_id "ENST00000365384.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.345-201"; exon_number 1; exon_id "ENSE00001440147.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000202254.1"; orig_coord_info "chr1,99791662,99791753,+"; Error, strand conflict in gtf info for chr1 ENSEMBL exon 111446798 111446908 . + . gene_id "Y_RNA^ENSG00000199890.1"; transcript_id "ENST00000363020.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.86-201"; exon_number 1; exon_id "ENSE00001437783.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199890.1"; orig_coord_info "chr1,111446798,111446908,+"; Error, strand conflict in gtf info for chr1 ENSEMBL exon 114490724 114490832 . + . gene_id "Y_RNA^ENSG00000201114.1"; transcript_id "ENST00000364244.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.220-201"; exon_number 1; exon_id "ENSE00001807149.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201114.1"; orig_coord_info "chr1,114490724,114490832,+"; Error, strand conflict in gtf info for chr1 ENSEMBL exon 116452536 116452627 . + . gene_id "Y_RNA^ENSG00000200547.1"; transcript_id "ENST00000363677.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.160-201"; exon_number 1; exon_id "ENSE00001438440.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200547.1"; orig_coord_info "chr1,116452536,116452627,+"; Error, strand conflict in gtf info for chr1 ENSEMBL exon 148330271 148330394 . + . gene_id "Y_RNA^ENSG00000252744.1"; transcript_id "ENST00000516935.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.707-201"; exon_number 1; exon_id "ENSE00002089212.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000252744.1"; orig_coord_info "chr1,148330271,148330394,+"; Error, strand conflict in gtf info for chr1 ENSEMBL exon 155120490 155120598 . + . gene_id "Y_RNA^ENSG00000202027.1"; transcript_id "ENST00000365157.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.323-201"; exon_number 1; exon_id "ENSE00001808015.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000202027.1"; orig_coord_info "chr1,155120490,155120598,+"; Error, strand conflict in gtf info for chr1 ENSEMBL exon 161699506 161699607 . + . gene_id "Y_RNA^ENSG00000199595.1"; transcript_id "ENST00000362725.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.51-201"; exon_number 1; exon_id "ENSE00001807435.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199595.1"; orig_coord_info "chr1,161699506,161699607,+"; Error, strand conflict in gtf info for chr1 ENSEMBL exon 164854231 164854332 . + . gene_id "Y_RNA^ENSG00000201987.1"; transcript_id "ENST00000365117.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.315-201"; exon_number 1; exon_id "ENSE00001439880.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201987.1"; orig_coord_info "chr1,164854231,164854332,+"; Error, strand conflict in gtf info for chr1 ENSEMBL exon 173808489 173808622 . + . gene_id "Y_RNA^ENSG00000252357.1"; transcript_id "ENST00000516548.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.686-201"; exon_number 1; exon_id "ENSE00002088825.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000252357.1"; orig_coord_info "chr1,173808489,173808622,+"; Error, strand conflict in gtf info for chr1 ENSEMBL exon 184315658 184315765 . + . gene_id "Y_RNA^ENSG00000207080.2"; transcript_id "ENST00000384352.2"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.477-201"; exon_number 1; exon_id "ENSE00001807758.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207080.2"; orig_coord_info "chr1,184315658,184315765,+"; Error, strand conflict in gtf info for chr1 ENSEMBL exon 185251313 185251411 . + . gene_id "Y_RNA^ENSG00000201421.1"; transcript_id "ENST00000364551.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.251-201"; exon_number 1; exon_id "ENSE00001439314.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201421.1"; orig_coord_info "chr1,185251313,185251411,+"; Error, strand conflict in gtf info for chr1 ENSEMBL exon 185266535 185266627 . + . gene_id "Y_RNA^ENSG00000252612.1"; transcript_id "ENST00000516803.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.699-201"; exon_number 1; exon_id "ENSE00002089080.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000252612.1"; orig_coord_info "chr1,185266535,185266627,+"; Error, strand conflict in gtf info for chr1 ENSEMBL exon 202070841 202070943 . + . gene_id "Y_RNA^ENSG00000212512.2"; transcript_id "ENST00000391210.2"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.587-201"; exon_number 1; exon_id "ENSE00001508994.2"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000212512.2"; orig_coord_info "chr1,202070841,202070943,+"; Error, strand conflict in gtf info for chr1 ENSEMBL exon 211803017 211803104 . + . gene_id "Y_RNA^ENSG00000212205.1"; transcript_id "ENST00000390903.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.578-201"; exon_number 1; exon_id "ENSE00001508687.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000212205.1"; orig_coord_info "chr1,211803017,211803104,+"; Error, strand conflict in gtf info for chr1 ENSEMBL exon 236060677 236060772 . + . gene_id "Y_RNA^ENSG00000252822.1"; transcript_id "ENST00000517013.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.713-201"; exon_number 1; exon_id "ENSE00002089290.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000252822.1"; orig_coord_info "chr1,236060677,236060772,+"; Error, strand conflict in gtf info for chr1 ENSEMBL exon 240341385 240341477 . + . gene_id "Y_RNA^ENSG00000252317.1"; transcript_id "ENST00000516508.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.683-201"; exon_number 1; exon_id "ENSE00002088785.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000252317.1"; orig_coord_info "chr1,240341385,240341477,+"; Error, strand conflict in gtf info for chr1 ENSEMBL exon 240698320 240698429 . + . gene_id "Y_RNA^ENSG00000199241.1"; transcript_id "ENST00000362371.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.10-201"; exon_number 1; exon_id "ENSE00001807880.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199241.1"; orig_coord_info "chr1,240698320,240698429,+"; Error, strand conflict in gtf info for chr1 ENSEMBL exon 247294835 247294941 . + . gene_id "Y_RNA^ENSG00000202079.1"; transcript_id "ENST00000365209.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.329-201"; exon_number 1; exon_id "ENSE00001439972.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000202079.1"; orig_coord_info "chr1,247294835,247294941,+"; Error, strand conflict in gtf info for chr1 ENSEMBL exon 247997000 247997096 . + . gene_id "Y_RNA^ENSG00000199442.1"; transcript_id "ENST00000362572.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.30-201"; exon_number 1; exon_id "ENSE00001437335.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199442.1"; orig_coord_info "chr1,247997000,247997096,+"; Error, strand conflict in gtf info for chr1 ENSEMBL exon 248029120 248029221 . + . gene_id "Y_RNA^ENSG00000200085.1"; transcript_id "ENST00000363215.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.109-201"; exon_number 1; exon_id "ENSE00001808579.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200085.1"; orig_coord_info "chr1,248029120,248029221,+"; Error, strand conflict in gtf info for chr1 ENSEMBL exon 248045788 248045889 . + . gene_id "Y_RNA^ENSG00000200982.1"; transcript_id "ENST00000364112.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.204-201"; exon_number 1; exon_id "ENSE00001808356.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200982.1"; orig_coord_info "chr1,248045788,248045889,+"; Error, chr discrepancy in gtf info for chr2 ENSEMBL exon 9615267 9615373 . + . gene_id "Y_RNA^ENSG00000207086.1"; transcript_id "ENST00000384358.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.478-201"; exon_number 1; exon_id "ENSE00001499367.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207086.1"; orig_coord_info "chr2,9615267,9615373,+"; Error, chr discrepancy in gtf info for chr2 ENSEMBL exon 20480844 20480955 . + . gene_id "Y_RNA^ENSG00000200829.1"; transcript_id "ENST00000363959.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.189-201"; exon_number 1; exon_id "ENSE00001438722.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200829.1"; orig_coord_info "chr2,20480844,20480955,+"; Error, chr discrepancy in gtf info for chr2 ENSEMBL exon 25008845 25008946 . - . gene_id "Y_RNA^ENSG00000207069.1"; transcript_id "ENST00000384341.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.474-201"; exon_number 1; exon_id "ENSE00001807795.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207069.1"; orig_coord_info "chr2,25008845,25008946,-"; Error, chr discrepancy in gtf info for chr2 ENSEMBL exon 25697076 25697188 . - . gene_id "Y_RNA^ENSG00000201160.1"; transcript_id "ENST00000364290.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.223-201"; exon_number 1; exon_id "ENSE00001808536.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201160.1"; orig_coord_info "chr2,25697076,25697188,-"; Error, chr discrepancy in gtf info for chr2 ENSEMBL exon 28927243 28927340 . - . gene_id "Y_RNA^ENSG00000222224.1"; transcript_id "ENST00000410292.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.593-201"; exon_number 1; exon_id "ENSE00001590110.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000222224.1"; orig_coord_info "chr2,28927243,28927340,-"; Error, chr discrepancy in gtf info for chr2 ENSEMBL exon 28972414 28972521 . - . gene_id "Y_RNA^ENSG00000200283.1"; transcript_id "ENST00000363413.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.130-201"; exon_number 1; exon_id "ENSE00001438176.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200283.1"; orig_coord_info "chr2,28972414,28972521,-"; Error, chr discrepancy in gtf info for chr2 ENSEMBL exon 32945339 32945451 . - . gene_id "Y_RNA^ENSG00000206951.1"; transcript_id "ENST00000384224.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.454-201"; exon_number 1; exon_id "ENSE00001806830.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206951.1"; orig_coord_info "chr2,32945339,32945451,-"; Error, chr discrepancy in gtf info for chr2 ENSEMBL exon 39128826 39128927 . - . gene_id "Y_RNA^ENSG00000202309.1"; transcript_id "ENST00000365439.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.352-201"; exon_number 1; exon_id "ENSE00001807124.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000202309.1"; orig_coord_info "chr2,39128826,39128927,-"; Error, chr discrepancy in gtf info for chr2 ENSEMBL exon 41857271 41857372 . - . gene_id "Y_RNA^ENSG00000207218.1"; transcript_id "ENST00000384489.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.505-201"; exon_number 1; exon_id "ENSE00001808627.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207218.1"; orig_coord_info "chr2,41857271,41857372,-"; Error, chr discrepancy in gtf info for chr2 ENSEMBL exon 43620878 43620984 . - . gene_id "Y_RNA^ENSG00000207411.1"; transcript_id "ENST00000384680.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.557-201"; exon_number 1; exon_id "ENSE00001499688.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207411.1"; orig_coord_info "chr2,43620878,43620984,-"; Error, chr discrepancy in gtf info for chr2 ENSEMBL exon 52297995 52298096 . + . gene_id "Y_RNA^ENSG00000202195.1"; transcript_id "ENST00000365325.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.339-201"; exon_number 1; exon_id "ENSE00001808604.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000202195.1"; orig_coord_info "chr2,52297995,52298096,+"; Error, chr discrepancy in gtf info for chr2 ENSEMBL exon 55286018 55286128 . + . gene_id "Y_RNA^ENSG00000206964.1"; transcript_id "ENST00000384237.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.457-201"; exon_number 1; exon_id "ENSE00001809215.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206964.1"; orig_coord_info "chr2,55286018,55286128,+"; Error, chr discrepancy in gtf info for chr2 ENSEMBL exon 61928634 61928704 . - . gene_id "Y_RNA^ENSG00000278523.1"; transcript_id "ENST00000618813.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.818-201"; exon_number 1; exon_id "ENSE00003722551.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000278523.1"; orig_coord_info "chr2,61928634,61928704,-"; Error, chr discrepancy in gtf info for chr2 ENSEMBL exon 62726636 62726740 . - . gene_id "Y_RNA^ENSG00000252436.1"; transcript_id "ENST00000516627.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.692-201"; exon_number 1; exon_id "ENSE00002088904.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000252436.1"; orig_coord_info "chr2,62726636,62726740,-"; Error, chr discrepancy in gtf info for chr2 ENSEMBL exon 64834056 64834157 . - . gene_id "Y_RNA^ENSG00000199964.1"; transcript_id "ENST00000363094.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.97-201"; exon_number 1; exon_id "ENSE00001808556.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199964.1"; orig_coord_info "chr2,64834056,64834157,-"; Error, chr discrepancy in gtf info for chr2 ENSEMBL exon 69334600 69334692 . + . gene_id "Y_RNA^ENSG00000252250.1"; transcript_id "ENST00000516441.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.680-201"; exon_number 1; exon_id "ENSE00002088718.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000252250.1"; orig_coord_info "chr2,69334600,69334692,+"; Error, chr discrepancy in gtf info for chr2 ENSEMBL exon 82307067 82307168 . - . gene_id "Y_RNA^ENSG00000201311.1"; transcript_id "ENST00000364441.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.238-201"; exon_number 1; exon_id "ENSE00001808389.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201311.1"; orig_coord_info "chr2,82307067,82307168,-"; Error, chr discrepancy in gtf info for chr2 ENSEMBL exon 85332895 85332996 . - . gene_id "Y_RNA^ENSG00000239143.1"; transcript_id "ENST00000458902.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.652-201"; exon_number 1; exon_id "ENSE00001806975.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000239143.1"; orig_coord_info "chr2,85332895,85332996,-"; Error, chr discrepancy in gtf info for chr2 ENSEMBL exon 85367585 85367686 . + . gene_id "Y_RNA^ENSG00000202382.1"; transcript_id "ENST00000365512.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.360-201"; exon_number 1; exon_id "ENSE00001808861.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000202382.1"; orig_coord_info "chr2,85367585,85367686,+"; Error, chr discrepancy in gtf info for chr2 ENSEMBL exon 85434507 85434619 . + . gene_id "Y_RNA^ENSG00000207207.1"; transcript_id "ENST00000384478.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.502-201"; exon_number 1; exon_id "ENSE00001808310.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207207.1"; orig_coord_info "chr2,85434507,85434619,+"; Error, chr discrepancy in gtf info for chr2 ENSEMBL exon 85460144 85460252 . - . gene_id "Y_RNA^ENSG00000199936.1"; transcript_id "ENST00000363066.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.93-201"; exon_number 1; exon_id "ENSE00001437829.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199936.1"; orig_coord_info "chr2,85460144,85460252,-"; Error, chr discrepancy in gtf info for chr2 ENSEMBL exon 86159956 86160066 . - . gene_id "Y_RNA^ENSG00000200241.1"; transcript_id "ENST00000363371.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.125-201"; exon_number 1; exon_id "ENSE00001438134.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200241.1"; orig_coord_info "chr2,86159956,86160066,-"; Error, chr discrepancy in gtf info for chr2 ENSEMBL exon 112579484 112579584 . - . gene_id "Y_RNA^ENSG00000207383.1"; transcript_id "ENST00000384653.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.546-201"; exon_number 1; exon_id "ENSE00001499661.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207383.1"; orig_coord_info "chr2,112579484,112579584,-"; Error, chr discrepancy in gtf info for chr2 ENSEMBL exon 120192245 120192357 . + . gene_id "Y_RNA^ENSG00000202046.1"; transcript_id "ENST00000365176.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.326-201"; exon_number 1; exon_id "ENSE00001807547.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000202046.1"; orig_coord_info "chr2,120192245,120192357,+"; Error, chr discrepancy in gtf info for chr2 ENSEMBL exon 120651273 120651374 . + . gene_id "Y_RNA^ENSG00000201006.1"; transcript_id "ENST00000364136.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.206-201"; exon_number 1; exon_id "ENSE00001438899.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201006.1"; orig_coord_info "chr2,120651273,120651374,+"; Error, chr discrepancy in gtf info for chr2 ENSEMBL exon 121040610 121040710 . - . gene_id "Y_RNA^ENSG00000201584.1"; transcript_id "ENST00000364714.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.274-201"; exon_number 1; exon_id "ENSE00001807229.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201584.1"; orig_coord_info "chr2,121040610,121040710,-"; Error, chr discrepancy in gtf info for chr2 ENSEMBL exon 121603073 121603164 . - . gene_id "Y_RNA^ENSG00000222467.1"; transcript_id "ENST00000410535.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.602-201"; exon_number 1; exon_id "ENSE00001590353.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000222467.1"; orig_coord_info "chr2,121603073,121603164,-"; Error, chr discrepancy in gtf info for chr2 ENSEMBL exon 127829747 127829852 . - . gene_id "Y_RNA^ENSG00000200390.1"; transcript_id "ENST00000363520.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.143-201"; exon_number 1; exon_id "ENSE00001438283.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200390.1"; orig_coord_info "chr2,127829747,127829852,-"; Error, chr discrepancy in gtf info for chr2 ENSEMBL exon 128067800 128067901 . + . gene_id "Y_RNA^ENSG00000200432.1"; transcript_id "ENST00000363562.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.150-201"; exon_number 1; exon_id "ENSE00001807129.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200432.1"; orig_coord_info "chr2,128067800,128067901,+"; Error, chr discrepancy in gtf info for chr2 ENSEMBL exon 128350829 128350927 . - . gene_id "Y_RNA^ENSG00000252742.1"; transcript_id "ENST00000516933.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.706-201"; exon_number 1; exon_id "ENSE00002089210.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000252742.1"; orig_coord_info "chr2,128350829,128350927,-"; Error, chr discrepancy in gtf info for chr2 ENSEMBL exon 135810169 135810279 . - . gene_id "Y_RNA^ENSG00000200664.1"; transcript_id "ENST00000363794.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.175-201"; exon_number 1; exon_id "ENSE00001438557.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200664.1"; orig_coord_info "chr2,135810169,135810279,-"; Error, chr discrepancy in gtf info for chr2 ENSEMBL exon 137715332 137715440 . + . gene_id "Y_RNA^ENSG00000222394.2"; transcript_id "ENST00000410462.2"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.596-201"; exon_number 1; exon_id "ENSE00001590280.2"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000222394.2"; orig_coord_info "chr2,137715332,137715440,+"; Error, chr discrepancy in gtf info for chr2 ENSEMBL exon 140992543 140992659 . + . gene_id "Y_RNA^ENSG00000201892.1"; transcript_id "ENST00000365022.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.307-201"; exon_number 1; exon_id "ENSE00001439785.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201892.1"; orig_coord_info "chr2,140992543,140992659,+"; Error, chr discrepancy in gtf info for chr2 ENSEMBL exon 143897263 143897361 . + . gene_id "Y_RNA^ENSG00000200287.1"; transcript_id "ENST00000363417.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.131-201"; exon_number 1; exon_id "ENSE00001438180.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200287.1"; orig_coord_info "chr2,143897263,143897361,+"; Error, chr discrepancy in gtf info for chr2 ENSEMBL exon 147472133 147472243 . - . gene_id "Y_RNA^ENSG00000207161.1"; transcript_id "ENST00000384432.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.494-201"; exon_number 1; exon_id "ENSE00001499440.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207161.1"; orig_coord_info "chr2,147472133,147472243,-"; Error, chr discrepancy in gtf info for chr2 ENSEMBL exon 152284350 152284460 . - . gene_id "Y_RNA^ENSG00000199884.1"; transcript_id "ENST00000363014.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.85-201"; exon_number 1; exon_id "ENSE00001437777.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199884.1"; orig_coord_info "chr2,152284350,152284460,-"; Error, chr discrepancy in gtf info for chr2 ENSEMBL exon 159536244 159536346 . - . gene_id "Y_RNA^ENSG00000207117.1"; transcript_id "ENST00000384389.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.484-201"; exon_number 1; exon_id "ENSE00001808016.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207117.1"; orig_coord_info "chr2,159536244,159536346,-"; Error, chr discrepancy in gtf info for chr2 ENSEMBL exon 166123494 166123597 . - . gene_id "Y_RNA^ENSG00000238813.1"; transcript_id "ENST00000458774.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.643-201"; exon_number 1; exon_id "ENSE00001809128.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000238813.1"; orig_coord_info "chr2,166123494,166123597,-"; Error, chr discrepancy in gtf info for chr2 ENSEMBL exon 170783167 170783271 . + . gene_id "Y_RNA^ENSG00000222509.1"; transcript_id "ENST00000410577.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.605-201"; exon_number 1; exon_id "ENSE00001590395.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000222509.1"; orig_coord_info "chr2,170783167,170783271,+"; Error, chr discrepancy in gtf info for chr2 ENSEMBL exon 172558151 172558252 . - . gene_id "Y_RNA^ENSG00000199866.1"; transcript_id "ENST00000362996.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.80-201"; exon_number 1; exon_id "ENSE00001807809.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199866.1"; orig_coord_info "chr2,172558151,172558252,-"; Error, chr discrepancy in gtf info for chr2 ENSEMBL exon 174264878 174264981 . - . gene_id "Y_RNA^ENSG00000201088.1"; transcript_id "ENST00000364218.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.218-201"; exon_number 1; exon_id "ENSE00001438981.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201088.1"; orig_coord_info "chr2,174264878,174264981,-"; Error, chr discrepancy in gtf info for chr2 ENSEMBL exon 175176493 175176586 . - . gene_id "Y_RNA^ENSG00000200121.2"; transcript_id "ENST00000363251.2"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.113-201"; exon_number 1; exon_id "ENSE00001438014.2"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200121.2"; orig_coord_info "chr2,175176493,175176586,-"; Error, chr discrepancy in gtf info for chr2 ENSEMBL exon 177194983 177195095 . + . gene_id "Y_RNA^ENSG00000201102.1"; transcript_id "ENST00000364232.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.219-201"; exon_number 1; exon_id "ENSE00001808676.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201102.1"; orig_coord_info "chr2,177194983,177195095,+"; Error, chr discrepancy in gtf info for chr2 ENSEMBL exon 182828124 182828221 . + . gene_id "Y_RNA^ENSG00000212404.1"; transcript_id "ENST00000391102.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.585-201"; exon_number 1; exon_id "ENSE00001508886.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000212404.1"; orig_coord_info "chr2,182828124,182828221,+"; Error, chr discrepancy in gtf info for chr2 ENSEMBL exon 183022859 183022971 . - . gene_id "Y_RNA^ENSG00000202141.1"; transcript_id "ENST00000365271.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.332-201"; exon_number 1; exon_id "ENSE00001440034.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000202141.1"; orig_coord_info "chr2,183022859,183022971,-"; Error, chr discrepancy in gtf info for chr2 ENSEMBL exon 200863152 200863247 . - . gene_id "Y_RNA^ENSG00000252759.1"; transcript_id "ENST00000516950.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.708-201"; exon_number 1; exon_id "ENSE00002089227.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000252759.1"; orig_coord_info "chr2,200863152,200863247,-"; Error, chr discrepancy in gtf info for chr2 ENSEMBL exon 201423513 201423604 . + . gene_id "Y_RNA^ENSG00000202008.1"; transcript_id "ENST00000365138.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.319-201"; exon_number 1; exon_id "ENSE00001439901.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000202008.1"; orig_coord_info "chr2,201423513,201423604,+"; Error, chr discrepancy in gtf info for chr2 ENSEMBL exon 201808681 201808782 . + . gene_id "Y_RNA^ENSG00000202137.1"; transcript_id "ENST00000365267.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.331-201"; exon_number 1; exon_id "ENSE00001807777.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000202137.1"; orig_coord_info "chr2,201808681,201808782,+"; Error, chr discrepancy in gtf info for chr2 ENSEMBL exon 206025593 206025697 . + . gene_id "Y_RNA^ENSG00000207386.1"; transcript_id "ENST00000384656.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.548-201"; exon_number 1; exon_id "ENSE00001499664.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207386.1"; orig_coord_info "chr2,206025593,206025697,+"; Error, chr discrepancy in gtf info for chr2 ENSEMBL exon 206701065 206701185 . - . gene_id "Y_RNA^ENSG00000207319.1"; transcript_id "ENST00000384589.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.531-201"; exon_number 1; exon_id "ENSE00001499597.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207319.1"; orig_coord_info "chr2,206701065,206701185,-"; Error, chr discrepancy in gtf info for chr2 ENSEMBL exon 207687960 207688059 . + . gene_id "Y_RNA^ENSG00000200764.1"; transcript_id "ENST00000363894.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.185-201"; exon_number 1; exon_id "ENSE00001438657.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200764.1"; orig_coord_info "chr2,207687960,207688059,+"; Error, chr discrepancy in gtf info for chr2 ENSEMBL exon 210265963 210266074 . + . gene_id "Y_RNA^ENSG00000199203.1"; transcript_id "ENST00000362333.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.4-201"; exon_number 1; exon_id "ENSE00001807680.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199203.1"; orig_coord_info "chr2,210265963,210266074,+"; Error, chr discrepancy in gtf info for chr2 ENSEMBL exon 216351403 216351504 . + . gene_id "Y_RNA^ENSG00000207303.1"; transcript_id "ENST00000384573.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.527-201"; exon_number 1; exon_id "ENSE00001808121.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207303.1"; orig_coord_info "chr2,216351403,216351504,+"; Error, chr discrepancy in gtf info for chr2 ENSEMBL exon 222404985 222405095 . + . gene_id "Y_RNA^ENSG00000200822.1"; transcript_id "ENST00000363952.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.188-201"; exon_number 1; exon_id "ENSE00001438715.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200822.1"; orig_coord_info "chr2,222404985,222405095,+"; Error, chr discrepancy in gtf info for chr2 ENSEMBL exon 232828653 232828751 . + . gene_id "Y_RNA^ENSG00000199781.1"; transcript_id "ENST00000362911.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.74-201"; exon_number 1; exon_id "ENSE00001437674.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199781.1"; orig_coord_info "chr2,232828653,232828751,+"; Error, chr discrepancy in gtf info for chr2 ENSEMBL exon 233379843 233379955 . - . gene_id "Y_RNA^ENSG00000201013.1"; transcript_id "ENST00000364143.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.208-201"; exon_number 1; exon_id "ENSE00001438906.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201013.1"; orig_coord_info "chr2,233379843,233379955,-"; Error, chr discrepancy in gtf info for chr2 ENSEMBL exon 236153071 236153172 . - . gene_id "Y_RNA^ENSG00000207049.1"; transcript_id "ENST00000384322.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.472-201"; exon_number 1; exon_id "ENSE00001808826.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207049.1"; orig_coord_info "chr2,236153071,236153172,-"; Error, chr discrepancy in gtf info for chr3 ENSEMBL exon 5086178 5086279 . - . gene_id "Y_RNA^ENSG00000207283.1"; transcript_id "ENST00000384553.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.519-201"; exon_number 1; exon_id "ENSE00001808615.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207283.1"; orig_coord_info "chr3,5086178,5086279,-"; Error, chr discrepancy in gtf info for chr3 ENSEMBL exon 23273807 23273910 . + . gene_id "Y_RNA^ENSG00000206728.1"; transcript_id "ENST00000384001.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.412-201"; exon_number 1; exon_id "ENSE00001499011.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206728.1"; orig_coord_info "chr3,23273807,23273910,+"; Error, chr discrepancy in gtf info for chr3 ENSEMBL exon 27547757 27547858 . - . gene_id "Y_RNA^ENSG00000238912.1"; transcript_id "ENST00000391229.2"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.645-201"; exon_number 1; exon_id "ENSE00001806842.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000238912.1"; orig_coord_info "chr3,27547757,27547858,-"; Error, chr discrepancy in gtf info for chr3 ENSEMBL exon 32045873 32045979 . + . gene_id "Y_RNA^ENSG00000252398.1"; transcript_id "ENST00000516589.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.689-201"; exon_number 1; exon_id "ENSE00002088866.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000252398.1"; orig_coord_info "chr3,32045873,32045979,+"; Error, chr discrepancy in gtf info for chr3 ENSEMBL exon 37093133 37093234 . - . gene_id "Y_RNA^ENSG00000206645.1"; transcript_id "ENST00000383918.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.387-201"; exon_number 1; exon_id "ENSE00001808804.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206645.1"; orig_coord_info "chr3,37093133,37093234,-"; Error, chr discrepancy in gtf info for chr3 ENSEMBL exon 38014568 38014669 . + . gene_id "Y_RNA^ENSG00000200579.1"; transcript_id "ENST00000363709.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.164-201"; exon_number 1; exon_id "ENSE00001808525.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200579.1"; orig_coord_info "chr3,38014568,38014669,+"; Error, chr discrepancy in gtf info for chr3 ENSEMBL exon 38125292 38125394 . - . gene_id "Y_RNA^ENSG00000201965.1"; transcript_id "ENST00000365095.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.313-201"; exon_number 1; exon_id "ENSE00001439858.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201965.1"; orig_coord_info "chr3,38125292,38125394,-"; Error, chr discrepancy in gtf info for chr3 ENSEMBL exon 38505480 38505581 . - . gene_id "Y_RNA^ENSG00000207512.1"; transcript_id "ENST00000384781.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.576-201"; exon_number 1; exon_id "ENSE00001808115.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207512.1"; orig_coord_info "chr3,38505480,38505581,-"; Error, chr discrepancy in gtf info for chr3 ENSEMBL exon 41868998 41869095 . - . gene_id "Y_RNA^ENSG00000251986.1"; transcript_id "ENST00000516177.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.665-201"; exon_number 1; exon_id "ENSE00002088454.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000251986.1"; orig_coord_info "chr3,41868998,41869095,-"; Error, chr discrepancy in gtf info for chr3 ENSEMBL exon 43472477 43472596 . + . gene_id "Y_RNA^ENSG00000251811.1"; transcript_id "ENST00000516002.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.660-201"; exon_number 1; exon_id "ENSE00002088279.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000251811.1"; orig_coord_info "chr3,43472477,43472596,+"; Error, chr discrepancy in gtf info for chr3 ENSEMBL exon 45903187 45903298 . + . gene_id "Y_RNA^ENSG00000201635.1"; transcript_id "ENST00000364765.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.280-201"; exon_number 1; exon_id "ENSE00001439528.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201635.1"; orig_coord_info "chr3,45903187,45903298,+"; Error, chr discrepancy in gtf info for chr3 ENSEMBL exon 47931808 47931914 . - . gene_id "Y_RNA^ENSG00000199591.1"; transcript_id "ENST00000362721.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.50-201"; exon_number 1; exon_id "ENSE00001808241.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199591.1"; orig_coord_info "chr3,47931808,47931914,-"; Error, chr discrepancy in gtf info for chr3 ENSEMBL exon 48288587 48288694 . + . gene_id "Y_RNA^ENSG00000199476.1"; transcript_id "ENST00000362606.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.37-201"; exon_number 1; exon_id "ENSE00001437369.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199476.1"; orig_coord_info "chr3,48288587,48288694,+"; Error, chr discrepancy in gtf info for chr3 ENSEMBL exon 49270132 49270239 . + . gene_id "Y_RNA^ENSG00000199546.1"; transcript_id "ENST00000362676.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.44-201"; exon_number 1; exon_id "ENSE00001437439.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199546.1"; orig_coord_info "chr3,49270132,49270239,+"; Error, chr discrepancy in gtf info for chr3 ENSEMBL exon 53290640 53290751 . + . gene_id "Y_RNA^ENSG00000274967.1"; transcript_id "ENST00000622394.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.788-201"; exon_number 1; exon_id "ENSE00003727148.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000274967.1"; orig_coord_info "chr3,53290640,53290751,+"; Error, chr discrepancy in gtf info for chr3 ENSEMBL exon 57493667 57493780 . + . gene_id "Y_RNA^ENSG00000212392.1"; transcript_id "ENST00000391090.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.584-201"; exon_number 1; exon_id "ENSE00001508874.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000212392.1"; orig_coord_info "chr3,57493667,57493780,+"; Error, chr discrepancy in gtf info for chr3 ENSEMBL exon 61739127 61739229 . - . gene_id "Y_RNA^ENSG00000252420.1"; transcript_id "ENST00000516611.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.691-201"; exon_number 1; exon_id "ENSE00002088888.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000252420.1"; orig_coord_info "chr3,61739127,61739229,-"; Error, chr discrepancy in gtf info for chr3 ENSEMBL exon 66003839 66003940 . - . gene_id "Y_RNA^ENSG00000202071.1"; transcript_id "ENST00000365201.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.327-201"; exon_number 1; exon_id "ENSE00001808451.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000202071.1"; orig_coord_info "chr3,66003839,66003940,-"; Error, chr discrepancy in gtf info for chr3 ENSEMBL exon 75964980 75965069 . - . gene_id "Y_RNA^ENSG00000222883.1"; transcript_id "ENST00000410951.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.619-201"; exon_number 1; exon_id "ENSE00001590769.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000222883.1"; orig_coord_info "chr3,75964980,75965069,-"; Error, chr discrepancy in gtf info for chr3 ENSEMBL exon 88431191 88431309 . + . gene_id "Y_RNA^ENSG00000207316.1"; transcript_id "ENST00000384586.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.529-201"; exon_number 1; exon_id "ENSE00001499594.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207316.1"; orig_coord_info "chr3,88431191,88431309,+"; Error, chr discrepancy in gtf info for chr3 ENSEMBL exon 93967926 93968020 . + . gene_id "Y_RNA^ENSG00000201339.1"; transcript_id "ENST00000364469.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.240-201"; exon_number 1; exon_id "ENSE00001807591.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201339.1"; orig_coord_info "chr3,93967926,93968020,+"; Error, chr discrepancy in gtf info for chr3 ENSEMBL exon 101458530 101458626 . + . gene_id "Y_RNA^ENSG00000201554.1"; transcript_id "ENST00000364684.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.268-201"; exon_number 1; exon_id "ENSE00001439447.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201554.1"; orig_coord_info "chr3,101458530,101458626,+"; Error, chr discrepancy in gtf info for chr3 ENSEMBL exon 101628310 101628406 . - . gene_id "Y_RNA^ENSG00000212319.1"; transcript_id "ENST00000391017.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.581-201"; exon_number 1; exon_id "ENSE00001508801.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000212319.1"; orig_coord_info "chr3,101628310,101628406,-"; Error, chr discrepancy in gtf info for chr3 ENSEMBL exon 101647421 101647522 . + . gene_id "Y_RNA^ENSG00000201511.1"; transcript_id "ENST00000364641.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.262-201"; exon_number 1; exon_id "ENSE00001809051.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201511.1"; orig_coord_info "chr3,101647421,101647522,+"; Error, chr discrepancy in gtf info for chr3 ENSEMBL exon 101955077 101955185 . + . gene_id "Y_RNA^ENSG00000202177.1"; transcript_id "ENST00000365307.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.336-201"; exon_number 1; exon_id "ENSE00001440070.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000202177.1"; orig_coord_info "chr3,101955077,101955185,+"; Error, chr discrepancy in gtf info for chr3 ENSEMBL exon 106515897 106515998 . + . gene_id "Y_RNA^ENSG00000200610.1"; transcript_id "ENST00000363740.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.168-201"; exon_number 1; exon_id "ENSE00001438503.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200610.1"; orig_coord_info "chr3,106515897,106515998,+"; Error, chr discrepancy in gtf info for chr3 ENSEMBL exon 106688678 106688779 . + . gene_id "Y_RNA^ENSG00000200361.1"; transcript_id "ENST00000363491.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.142-201"; exon_number 1; exon_id "ENSE00001808785.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200361.1"; orig_coord_info "chr3,106688678,106688779,+"; Error, chr discrepancy in gtf info for chr3 ENSEMBL exon 110727021 110727121 . + . gene_id "Y_RNA^ENSG00000201426.1"; transcript_id "ENST00000364556.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.252-201"; exon_number 1; exon_id "ENSE00001439319.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201426.1"; orig_coord_info "chr3,110727021,110727121,+"; Error, chr discrepancy in gtf info for chr3 ENSEMBL exon 120210320 120210421 . + . gene_id "Y_RNA^ENSG00000206721.1"; transcript_id "ENST00000383994.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.411-201"; exon_number 1; exon_id "ENSE00001808896.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206721.1"; orig_coord_info "chr3,120210320,120210421,+"; Error, chr discrepancy in gtf info for chr3 ENSEMBL exon 122025195 122025304 . - . gene_id "Y_RNA^ENSG00000202388.1"; transcript_id "ENST00000365518.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.362-201"; exon_number 1; exon_id "ENSE00001440281.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000202388.1"; orig_coord_info "chr3,122025195,122025304,-"; Error, chr discrepancy in gtf info for chr3 ENSEMBL exon 125516979 125517086 . + . gene_id "Y_RNA^ENSG00000201800.1"; transcript_id "ENST00000364930.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.296-201"; exon_number 1; exon_id "ENSE00001439693.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201800.1"; orig_coord_info "chr3,125516979,125517086,+"; Error, chr discrepancy in gtf info for chr3 ENSEMBL exon 125528244 125528349 . - . gene_id "Y_RNA^ENSG00000252965.1"; transcript_id "ENST00000517156.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.719-201"; exon_number 1; exon_id "ENSE00002089433.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000252965.1"; orig_coord_info "chr3,125528244,125528349,-"; Error, chr discrepancy in gtf info for chr3 ENSEMBL exon 127202372 127202473 . - . gene_id "Y_RNA^ENSG00000212556.1"; transcript_id "ENST00000391254.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.588-201"; exon_number 1; exon_id "ENSE00001509038.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000212556.1"; orig_coord_info "chr3,127202372,127202473,-"; Error, chr discrepancy in gtf info for chr3 ENSEMBL exon 130914340 130914452 . - . gene_id "Y_RNA^ENSG00000252894.2"; transcript_id "ENST00000517085.2"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.716-201"; exon_number 1; exon_id "ENSE00002089362.2"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000252894.2"; orig_coord_info "chr3,130914340,130914452,-"; Error, chr discrepancy in gtf info for chr3 ENSEMBL exon 149094353 149094462 . - . gene_id "Y_RNA^ENSG00000201031.1"; transcript_id "ENST00000364161.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.210-201"; exon_number 1; exon_id "ENSE00001438924.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201031.1"; orig_coord_info "chr3,149094353,149094462,-"; Error, chr discrepancy in gtf info for chr3 ENSEMBL exon 152449272 152449384 . + . gene_id "Y_RNA^ENSG00000201217.1"; transcript_id "ENST00000364347.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.229-201"; exon_number 1; exon_id "ENSE00001808397.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201217.1"; orig_coord_info "chr3,152449272,152449384,+"; Error, chr discrepancy in gtf info for chr3 ENSEMBL exon 153607377 153607479 . + . gene_id "Y_RNA^ENSG00000200162.1"; transcript_id "ENST00000363292.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.116-201"; exon_number 1; exon_id "ENSE00001808226.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200162.1"; orig_coord_info "chr3,153607377,153607479,+"; Error, chr discrepancy in gtf info for chr3 ENSEMBL exon 157153548 157153640 . + . gene_id "Y_RNA^ENSG00000201778.1"; transcript_id "ENST00000364908.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.293-201"; exon_number 1; exon_id "ENSE00001439671.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201778.1"; orig_coord_info "chr3,157153548,157153640,+"; Error, chr discrepancy in gtf info for chr3 ENSEMBL exon 165122713 165122823 . - . gene_id "Y_RNA^ENSG00000200052.1"; transcript_id "ENST00000363182.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.105-201"; exon_number 1; exon_id "ENSE00001437945.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200052.1"; orig_coord_info "chr3,165122713,165122823,-"; Error, chr discrepancy in gtf info for chr3 ENSEMBL exon 170244782 170244881 . + . gene_id "Y_RNA^ENSG00000200118.1"; transcript_id "ENST00000363248.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.111-201"; exon_number 1; exon_id "ENSE00001438011.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200118.1"; orig_coord_info "chr3,170244782,170244881,+"; Error, chr discrepancy in gtf info for chr3 ENSEMBL exon 171439526 171439627 . + . gene_id "Y_RNA^ENSG00000222506.1"; transcript_id "ENST00000410574.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.604-201"; exon_number 1; exon_id "ENSE00001590392.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000222506.1"; orig_coord_info "chr3,171439526,171439627,+"; Error, chr discrepancy in gtf info for chr3 ENSEMBL exon 177120691 177120800 . - . gene_id "Y_RNA^ENSG00000201343.1"; transcript_id "ENST00000364473.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.242-201"; exon_number 1; exon_id "ENSE00001439236.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201343.1"; orig_coord_info "chr3,177120691,177120800,-"; Error, chr discrepancy in gtf info for chr3 ENSEMBL exon 179097731 179097840 . + . gene_id "Y_RNA^ENSG00000200616.1"; transcript_id "ENST00000363746.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.170-201"; exon_number 1; exon_id "ENSE00001438509.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200616.1"; orig_coord_info "chr3,179097731,179097840,+"; Error, chr discrepancy in gtf info for chr3 ENSEMBL exon 184086791 184086903 . - . gene_id "Y_RNA^ENSG00000207351.1"; transcript_id "ENST00000384621.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.536-201"; exon_number 1; exon_id "ENSE00001808509.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207351.1"; orig_coord_info "chr3,184086791,184086903,-"; Error, chr discrepancy in gtf info for chr3 ENSEMBL exon 191641135 191641237 . + . gene_id "Y_RNA^ENSG00000201860.1"; transcript_id "ENST00000364990.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.301-201"; exon_number 1; exon_id "ENSE00001439753.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201860.1"; orig_coord_info "chr3,191641135,191641237,+"; Error, chr discrepancy in gtf info for chr3 ENSEMBL exon 193624189 193624301 . + . gene_id "Y_RNA^ENSG00000207370.1"; transcript_id "ENST00000384640.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.541-201"; exon_number 1; exon_id "ENSE00001807005.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207370.1"; orig_coord_info "chr3,193624189,193624301,+"; Error, chr discrepancy in gtf info for chr3 ENSEMBL exon 195419436 195419546 . - . gene_id "Y_RNA^ENSG00000207368.1"; transcript_id "ENST00000384638.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.540-201"; exon_number 1; exon_id "ENSE00001808794.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207368.1"; orig_coord_info "chr3,195419436,195419546,-"; Error, chr discrepancy in gtf info for chr3 ENSEMBL exon 196202349 196202453 . + . gene_id "Y_RNA^ENSG00000222335.1"; transcript_id "ENST00000410403.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.595-201"; exon_number 1; exon_id "ENSE00001590221.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000222335.1"; orig_coord_info "chr3,196202349,196202453,+"; Error, chr discrepancy in gtf info for chr4 ENSEMBL exon 1683420 1683529 . - . gene_id "Y_RNA^ENSG00000207009.1"; transcript_id "ENST00000384282.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.464-201"; exon_number 1; exon_id "ENSE00001499291.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207009.1"; orig_coord_info "chr4,1683420,1683529,-"; Error, chr discrepancy in gtf info for chr4 ENSEMBL exon 2615124 2615224 . - . gene_id "Y_RNA^ENSG00000206738.1"; transcript_id "ENST00000384011.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.414-201"; exon_number 1; exon_id "ENSE00001808984.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206738.1"; orig_coord_info "chr4,2615124,2615224,-"; Error, chr discrepancy in gtf info for chr4 ENSEMBL exon 5426885 5426984 . - . gene_id "Y_RNA^ENSG00000252266.1"; transcript_id "ENST00000516457.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.682-201"; exon_number 1; exon_id "ENSE00002088734.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000252266.1"; orig_coord_info "chr4,5426885,5426984,-"; Error, chr discrepancy in gtf info for chr4 ENSEMBL exon 27223319 27223427 . - . gene_id "Y_RNA^ENSG00000222206.1"; transcript_id "ENST00000410274.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.592-201"; exon_number 1; exon_id "ENSE00001590092.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000222206.1"; orig_coord_info "chr4,27223319,27223427,-"; Error, chr discrepancy in gtf info for chr4 ENSEMBL exon 37699895 37700002 . - . gene_id "Y_RNA^ENSG00000207075.1"; transcript_id "ENST00000384347.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.476-201"; exon_number 1; exon_id "ENSE00001499356.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207075.1"; orig_coord_info "chr4,37699895,37700002,-"; Error, chr discrepancy in gtf info for chr4 ENSEMBL exon 39441665 39441764 . + . gene_id "Y_RNA^ENSG00000238797.1"; transcript_id "ENST00000459360.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.642-201"; exon_number 1; exon_id "ENSE00001808040.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000238797.1"; orig_coord_info "chr4,39441665,39441764,+"; Error, chr discrepancy in gtf info for chr4 ENSEMBL exon 39710085 39710176 . - . gene_id "Y_RNA^ENSG00000252975.1"; transcript_id "ENST00000517166.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.720-201"; exon_number 1; exon_id "ENSE00002089443.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000252975.1"; orig_coord_info "chr4,39710085,39710176,-"; Error, chr discrepancy in gtf info for chr4 ENSEMBL exon 40826655 40826765 . - . gene_id "Y_RNA^ENSG00000207195.1"; transcript_id "ENST00000384466.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.500-201"; exon_number 1; exon_id "ENSE00001808806.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207195.1"; orig_coord_info "chr4,40826655,40826765,-"; Error, chr discrepancy in gtf info for chr4 ENSEMBL exon 41303237 41303337 . - . gene_id "Y_RNA^ENSG00000207481.1"; transcript_id "ENST00000384750.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.570-201"; exon_number 1; exon_id "ENSE00001807342.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207481.1"; orig_coord_info "chr4,41303237,41303337,-"; Error, chr discrepancy in gtf info for chr4 ENSEMBL exon 48153434 48153535 . + . gene_id "Y_RNA^ENSG00000202014.1"; transcript_id "ENST00000365144.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.320-201"; exon_number 1; exon_id "ENSE00001808369.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000202014.1"; orig_coord_info "chr4,48153434,48153535,+"; Error, chr discrepancy in gtf info for chr4 ENSEMBL exon 52786537 52786638 . + . gene_id "Y_RNA^ENSG00000199901.1"; transcript_id "ENST00000363031.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.89-201"; exon_number 1; exon_id "ENSE00001809113.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199901.1"; orig_coord_info "chr4,52786537,52786638,+"; Error, chr discrepancy in gtf info for chr4 ENSEMBL exon 55412636 55412738 . + . gene_id "Y_RNA^ENSG00000239040.1"; transcript_id "ENST00000459077.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.649-201"; exon_number 1; exon_id "ENSE00001808600.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000239040.1"; orig_coord_info "chr4,55412636,55412738,+"; Error, chr discrepancy in gtf info for chr4 ENSEMBL exon 55501595 55501708 . - . gene_id "Y_RNA^ENSG00000238585.1"; transcript_id "ENST00000459424.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.637-201"; exon_number 1; exon_id "ENSE00001807049.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000238585.1"; orig_coord_info "chr4,55501595,55501708,-"; Error, chr discrepancy in gtf info for chr4 ENSEMBL exon 56818218 56818314 . - . gene_id "Y_RNA^ENSG00000251799.1"; transcript_id "ENST00000515990.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.658-201"; exon_number 1; exon_id "ENSE00002088267.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000251799.1"; orig_coord_info "chr4,56818218,56818314,-"; Error, chr discrepancy in gtf info for chr4 ENSEMBL exon 59533786 59533898 . + . gene_id "Y_RNA^ENSG00000199780.1"; transcript_id "ENST00000362910.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.73-201"; exon_number 1; exon_id "ENSE00001808414.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199780.1"; orig_coord_info "chr4,59533786,59533898,+"; Error, chr discrepancy in gtf info for chr4 ENSEMBL exon 59833175 59833276 . + . gene_id "Y_RNA^ENSG00000201676.1"; transcript_id "ENST00000364806.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.284-201"; exon_number 1; exon_id "ENSE00001807474.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201676.1"; orig_coord_info "chr4,59833175,59833276,+"; Error, chr discrepancy in gtf info for chr4 ENSEMBL exon 61906313 61906408 . + . gene_id "Y_RNA^ENSG00000202169.1"; transcript_id "ENST00000365299.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.335-201"; exon_number 1; exon_id "ENSE00001440062.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000202169.1"; orig_coord_info "chr4,61906313,61906408,+"; Error, chr discrepancy in gtf info for chr4 ENSEMBL exon 75662120 75662213 . - . gene_id "Y_RNA^ENSG00000201644.2"; transcript_id "ENST00000364774.2"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.281-201"; exon_number 1; exon_id "ENSE00001439537.2"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201644.2"; orig_coord_info "chr4,75662120,75662213,-"; Error, chr discrepancy in gtf info for chr4 ENSEMBL exon 78632273 78632385 . - . gene_id "Y_RNA^ENSG00000200998.1"; transcript_id "ENST00000364128.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.205-201"; exon_number 1; exon_id "ENSE00001808270.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200998.1"; orig_coord_info "chr4,78632273,78632385,-"; Error, chr discrepancy in gtf info for chr4 ENSEMBL exon 82944738 82944845 . - . gene_id "Y_RNA^ENSG00000199530.1"; transcript_id "ENST00000362660.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.42-201"; exon_number 1; exon_id "ENSE00001437423.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199530.1"; orig_coord_info "chr4,82944738,82944845,-"; Error, chr discrepancy in gtf info for chr4 ENSEMBL exon 83636196 83636290 . - . gene_id "Y_RNA^ENSG00000201633.1"; transcript_id "ENST00000364763.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.279-201"; exon_number 1; exon_id "ENSE00001439526.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201633.1"; orig_coord_info "chr4,83636196,83636290,-"; Error, chr discrepancy in gtf info for chr4 ENSEMBL exon 87743952 87744053 . - . gene_id "Y_RNA^ENSG00000200024.1"; transcript_id "ENST00000363154.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.101-201"; exon_number 1; exon_id "ENSE00001808365.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200024.1"; orig_coord_info "chr4,87743952,87744053,-"; Error, chr discrepancy in gtf info for chr4 ENSEMBL exon 88330176 88330278 . - . gene_id "Y_RNA^ENSG00000207480.1"; transcript_id "ENST00000384749.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.569-201"; exon_number 1; exon_id "ENSE00001499757.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207480.1"; orig_coord_info "chr4,88330176,88330278,-"; Error, chr discrepancy in gtf info for chr4 ENSEMBL exon 112755816 112755917 . - . gene_id "Y_RNA^ENSG00000202536.2"; transcript_id "ENST00000365666.2"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.381-201"; exon_number 1; exon_id "ENSE00001807546.2"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000202536.2"; orig_coord_info "chr4,112755816,112755917,-"; Error, chr discrepancy in gtf info for chr4 ENSEMBL exon 119947131 119947232 . + . gene_id "Y_RNA^ENSG00000200553.1"; transcript_id "ENST00000363683.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.162-201"; exon_number 1; exon_id "ENSE00001809025.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200553.1"; orig_coord_info "chr4,119947131,119947232,+"; Error, chr discrepancy in gtf info for chr4 ENSEMBL exon 121329069 121329170 . - . gene_id "Y_RNA^ENSG00000207148.1"; transcript_id "ENST00000384419.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.492-201"; exon_number 1; exon_id "ENSE00001499427.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207148.1"; orig_coord_info "chr4,121329069,121329170,-"; Error, chr discrepancy in gtf info for chr4 ENSEMBL exon 125362819 125362929 . + . gene_id "Y_RNA^ENSG00000201297.1"; transcript_id "ENST00000364427.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.236-201"; exon_number 1; exon_id "ENSE00001439190.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201297.1"; orig_coord_info "chr4,125362819,125362929,+"; Error, chr discrepancy in gtf info for chr4 ENSEMBL exon 127028107 127028219 . - . gene_id "Y_RNA^ENSG00000199862.1"; transcript_id "ENST00000362992.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.79-201"; exon_number 1; exon_id "ENSE00001437755.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199862.1"; orig_coord_info "chr4,127028107,127028219,-"; Error, chr discrepancy in gtf info for chr4 ENSEMBL exon 139200395 139200513 . + . gene_id "Y_RNA^ENSG00000207384.1"; transcript_id "ENST00000384654.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.547-201"; exon_number 1; exon_id "ENSE00001499662.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207384.1"; orig_coord_info "chr4,139200395,139200513,+"; Error, chr discrepancy in gtf info for chr4 ENSEMBL exon 140779039 140779141 . - . gene_id "Y_RNA^ENSG00000222613.1"; transcript_id "ENST00000410681.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.610-201"; exon_number 1; exon_id "ENSE00001590499.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000222613.1"; orig_coord_info "chr4,140779039,140779141,-"; Error, chr discrepancy in gtf info for chr4 ENSEMBL exon 143309466 143309566 . + . gene_id "Y_RNA^ENSG00000200049.1"; transcript_id "ENST00000363179.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.104-201"; exon_number 1; exon_id "ENSE00001437942.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200049.1"; orig_coord_info "chr4,143309466,143309566,+"; Error, chr discrepancy in gtf info for chr4 ENSEMBL exon 145149537 145149649 . - . gene_id "Y_RNA^ENSG00000238713.1"; transcript_id "ENST00000459374.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.638-201"; exon_number 1; exon_id "ENSE00001809236.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000238713.1"; orig_coord_info "chr4,145149537,145149649,-"; Error, chr discrepancy in gtf info for chr4 ENSEMBL exon 145958128 145958240 . - . gene_id "Y_RNA^ENSG00000201314.1"; transcript_id "ENST00000364444.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.239-201"; exon_number 1; exon_id "ENSE00001807048.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201314.1"; orig_coord_info "chr4,145958128,145958240,-"; Error, chr discrepancy in gtf info for chr4 ENSEMBL exon 153266909 153267010 . - . gene_id "Y_RNA^ENSG00000201786.1"; transcript_id "ENST00000364916.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.294-201"; exon_number 1; exon_id "ENSE00001807650.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201786.1"; orig_coord_info "chr4,153266909,153267010,-"; Error, chr discrepancy in gtf info for chr4 ENSEMBL exon 157064557 157064663 . + . gene_id "Y_RNA^ENSG00000252524.1"; transcript_id "ENST00000516715.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.695-201"; exon_number 1; exon_id "ENSE00002088992.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000252524.1"; orig_coord_info "chr4,157064557,157064663,+"; Error, chr discrepancy in gtf info for chr4 ENSEMBL exon 157768013 157768113 . - . gene_id "Y_RNA^ENSG00000200521.1"; transcript_id "ENST00000363651.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.158-201"; exon_number 1; exon_id "ENSE00001808936.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200521.1"; orig_coord_info "chr4,157768013,157768113,-"; Error, chr discrepancy in gtf info for chr4 ENSEMBL exon 159064297 159064398 . - . gene_id "Y_RNA^ENSG00000206978.1"; transcript_id "ENST00000384251.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.459-201"; exon_number 1; exon_id "ENSE00001499260.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206978.1"; orig_coord_info "chr4,159064297,159064398,-"; Error, chr discrepancy in gtf info for chr4 ENSEMBL exon 166312935 166313034 . - . gene_id "Y_RNA^ENSG00000206711.1"; transcript_id "ENST00000383984.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.406-201"; exon_number 1; exon_id "ENSE00001498994.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206711.1"; orig_coord_info "chr4,166312935,166313034,-"; Error, chr discrepancy in gtf info for chr4 ENSEMBL exon 185415973 185416086 . - . gene_id "Y_RNA^ENSG00000207231.1"; transcript_id "ENST00000384502.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.508-201"; exon_number 1; exon_id "ENSE00001499510.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207231.1"; orig_coord_info "chr4,185415973,185416086,-"; Error, chr discrepancy in gtf info for chr4 ENSEMBL exon 185709873 185709967 . - . gene_id "Y_RNA^ENSG00000207497.1"; transcript_id "ENST00000384766.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.574-201"; exon_number 1; exon_id "ENSE00001499774.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207497.1"; orig_coord_info "chr4,185709873,185709967,-"; Error, chr discrepancy in gtf info for chr5 ENSEMBL exon 144087 144197 . - . gene_id "Y_RNA^ENSG00000199540.1"; transcript_id "ENST00000362670.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.43-201"; exon_number 1; exon_id "ENSE00001437433.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199540.1"; orig_coord_info "chr5,144087,144197,-"; Error, chr discrepancy in gtf info for chr5 ENSEMBL exon 2184710 2184820 . + . gene_id "Y_RNA^ENSG00000201026.1"; transcript_id "ENST00000364156.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.209-201"; exon_number 1; exon_id "ENSE00001438919.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201026.1"; orig_coord_info "chr5,2184710,2184820,+"; Error, chr discrepancy in gtf info for chr5 ENSEMBL exon 10292041 10292148 . - . gene_id "Y_RNA^ENSG00000252341.1"; transcript_id "ENST00000516532.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.685-201"; exon_number 1; exon_id "ENSE00002088809.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000252341.1"; orig_coord_info "chr5,10292041,10292148,-"; Error, chr discrepancy in gtf info for chr5 ENSEMBL exon 10337277 10337386 . + . gene_id "Y_RNA^ENSG00000252671.1"; transcript_id "ENST00000516862.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.705-201"; exon_number 1; exon_id "ENSE00002089139.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000252671.1"; orig_coord_info "chr5,10337277,10337386,+"; Error, chr discrepancy in gtf info for chr5 ENSEMBL exon 16623004 16623095 . - . gene_id "Y_RNA^ENSG00000201370.1"; transcript_id "ENST00000364500.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.247-201"; exon_number 1; exon_id "ENSE00001439263.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201370.1"; orig_coord_info "chr5,16623004,16623095,-"; Error, chr discrepancy in gtf info for chr5 ENSEMBL exon 17117576 17117686 . - . gene_id "Y_RNA^ENSG00000206814.1"; transcript_id "ENST00000384087.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.432-201"; exon_number 1; exon_id "ENSE00001808325.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206814.1"; orig_coord_info "chr5,17117576,17117686,-"; Error, chr discrepancy in gtf info for chr5 ENSEMBL exon 23299155 23299262 . + . gene_id "Y_RNA^ENSG00000206912.1"; transcript_id "ENST00000384185.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.448-201"; exon_number 1; exon_id "ENSE00001499194.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206912.1"; orig_coord_info "chr5,23299155,23299262,+"; Error, chr discrepancy in gtf info for chr5 ENSEMBL exon 23994502 23994603 . - . gene_id "Y_RNA^ENSG00000200600.1"; transcript_id "ENST00000363730.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.166-201"; exon_number 1; exon_id "ENSE00001809066.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200600.1"; orig_coord_info "chr5,23994502,23994603,-"; Error, chr discrepancy in gtf info for chr5 ENSEMBL exon 24910594 24910695 . + . gene_id "Y_RNA^ENSG00000199911.1"; transcript_id "ENST00000363041.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.90-201"; exon_number 1; exon_id "ENSE00001808553.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199911.1"; orig_coord_info "chr5,24910594,24910695,+"; Error, chr discrepancy in gtf info for chr5 ENSEMBL exon 31505684 31505788 . + . gene_id "Y_RNA^ENSG00000206682.1"; transcript_id "ENST00000383955.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.399-201"; exon_number 1; exon_id "ENSE00001498965.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206682.1"; orig_coord_info "chr5,31505684,31505788,+"; Error, chr discrepancy in gtf info for chr5 ENSEMBL exon 32134738 32134834 . + . gene_id "Y_RNA^ENSG00000200065.1"; transcript_id "ENST00000363195.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.108-201"; exon_number 1; exon_id "ENSE00001437958.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200065.1"; orig_coord_info "chr5,32134738,32134834,+"; Error, chr discrepancy in gtf info for chr5 ENSEMBL exon 41963868 41963969 . - . gene_id "Y_RNA^ENSG00000199487.1"; transcript_id "ENST00000362617.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.38-201"; exon_number 1; exon_id "ENSE00001808046.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199487.1"; orig_coord_info "chr5,41963868,41963969,-"; Error, chr discrepancy in gtf info for chr5 ENSEMBL exon 55040847 55040945 . + . gene_id "Y_RNA^ENSG00000207229.1"; transcript_id "ENST00000384500.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.507-201"; exon_number 1; exon_id "ENSE00001499508.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207229.1"; orig_coord_info "chr5,55040847,55040945,+"; Error, chr discrepancy in gtf info for chr5 ENSEMBL exon 57169108 57169209 . - . gene_id "Y_RNA^ENSG00000207293.1"; transcript_id "ENST00000384563.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.523-201"; exon_number 1; exon_id "ENSE00001808599.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207293.1"; orig_coord_info "chr5,57169108,57169209,-"; Error, chr discrepancy in gtf info for chr5 ENSEMBL exon 65123369 65123474 . + . gene_id "Y_RNA^ENSG00000207439.1"; transcript_id "ENST00000384708.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.564-201"; exon_number 1; exon_id "ENSE00001499716.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207439.1"; orig_coord_info "chr5,65123369,65123474,+"; Error, chr discrepancy in gtf info for chr5 ENSEMBL exon 72768702 72768811 . + . gene_id "Y_RNA^ENSG00000206770.1"; transcript_id "ENST00000384043.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.420-201"; exon_number 1; exon_id "ENSE00001499053.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206770.1"; orig_coord_info "chr5,72768702,72768811,+"; Error, chr discrepancy in gtf info for chr5 ENSEMBL exon 78317036 78317137 . + . gene_id "Y_RNA^ENSG00000206714.1"; transcript_id "ENST00000383987.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.408-201"; exon_number 1; exon_id "ENSE00001807664.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206714.1"; orig_coord_info "chr5,78317036,78317137,+"; Error, chr discrepancy in gtf info for chr5 ENSEMBL exon 79534853 79534954 . + . gene_id "Y_RNA^ENSG00000207391.1"; transcript_id "ENST00000384661.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.551-201"; exon_number 1; exon_id "ENSE00001807742.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207391.1"; orig_coord_info "chr5,79534853,79534954,+"; Error, chr discrepancy in gtf info for chr5 ENSEMBL exon 79562745 79562846 . - . gene_id "Y_RNA^ENSG00000277818.1"; transcript_id "ENST00000364639.2"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.813-201"; exon_number 1; exon_id "ENSE00001439402.2"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000277818.1"; orig_coord_info "chr5,79562745,79562846,-"; Error, chr discrepancy in gtf info for chr5 ENSEMBL exon 96962656 96962757 . - . gene_id "Y_RNA^ENSG00000200884.1"; transcript_id "ENST00000364014.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.199-201"; exon_number 1; exon_id "ENSE00001807414.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200884.1"; orig_coord_info "chr5,96962656,96962757,-"; Error, chr discrepancy in gtf info for chr5 ENSEMBL exon 98936638 98936747 . - . gene_id "Y_RNA^ENSG00000200351.1"; transcript_id "ENST00000363481.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.141-201"; exon_number 1; exon_id "ENSE00001438244.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200351.1"; orig_coord_info "chr5,98936638,98936747,-"; Error, chr discrepancy in gtf info for chr5 ENSEMBL exon 100021804 100021906 . + . gene_id "Y_RNA^ENSG00000199378.1"; transcript_id "ENST00000362508.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.24-201"; exon_number 1; exon_id "ENSE00001806990.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199378.1"; orig_coord_info "chr5,100021804,100021906,+"; Error, chr discrepancy in gtf info for chr5 ENSEMBL exon 108891437 108891546 . + . gene_id "Y_RNA^ENSG00000207404.1"; transcript_id "ENST00000384673.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.555-201"; exon_number 1; exon_id "ENSE00001499681.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207404.1"; orig_coord_info "chr5,108891437,108891546,+"; Error, chr discrepancy in gtf info for chr5 ENSEMBL exon 128371099 128371212 . - . gene_id "Y_RNA^ENSG00000207290.1"; transcript_id "ENST00000384560.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.521-201"; exon_number 1; exon_id "ENSE00001499568.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207290.1"; orig_coord_info "chr5,128371099,128371212,-"; Error, chr discrepancy in gtf info for chr5 ENSEMBL exon 132468147 132468257 . + . gene_id "Y_RNA^ENSG00000202533.1"; transcript_id "ENST00000365663.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.380-201"; exon_number 1; exon_id "ENSE00001584442.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000202533.1"; orig_coord_info "chr5,132468147,132468257,+"; Error, chr discrepancy in gtf info for chr5 ENSEMBL exon 132945342 132945454 . + . gene_id "Y_RNA^ENSG00000202417.1"; transcript_id "ENST00000365547.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.368-201"; exon_number 1; exon_id "ENSE00001440310.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000202417.1"; orig_coord_info "chr5,132945342,132945454,+"; Error, chr discrepancy in gtf info for chr5 ENSEMBL exon 132993099 132993200 . - . gene_id "Y_RNA^ENSG00000199677.1"; transcript_id "ENST00000362807.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.58-201"; exon_number 1; exon_id "ENSE00001807822.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199677.1"; orig_coord_info "chr5,132993099,132993200,-"; Error, chr discrepancy in gtf info for chr5 ENSEMBL exon 139554900 139555001 . - . gene_id "Y_RNA^ENSG00000207020.1"; transcript_id "ENST00000384293.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.465-201"; exon_number 1; exon_id "ENSE00001807905.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207020.1"; orig_coord_info "chr5,139554900,139555001,-"; Error, chr discrepancy in gtf info for chr5 ENSEMBL exon 140019492 140019592 . + . gene_id "Y_RNA^ENSG00000207317.1"; transcript_id "ENST00000384587.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.530-201"; exon_number 1; exon_id "ENSE00001808697.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207317.1"; orig_coord_info "chr5,140019492,140019592,+"; Error, chr discrepancy in gtf info for chr5 ENSEMBL exon 149940030 149940131 . - . gene_id "Y_RNA^ENSG00000200334.1"; transcript_id "ENST00000363464.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.139-201"; exon_number 1; exon_id "ENSE00001809055.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200334.1"; orig_coord_info "chr5,149940030,149940131,-"; Error, chr discrepancy in gtf info for chr5 ENSEMBL exon 150098406 150098506 . + . gene_id "Y_RNA^ENSG00000199409.1"; transcript_id "ENST00000362539.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.26-201"; exon_number 1; exon_id "ENSE00001437302.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199409.1"; orig_coord_info "chr5,150098406,150098506,+"; Error, chr discrepancy in gtf info for chr5 ENSEMBL exon 154705626 154705727 . + . gene_id "Y_RNA^ENSG00000274472.1"; transcript_id "ENST00000613546.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.783-201"; exon_number 1; exon_id "ENSE00003717048.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000274472.1"; orig_coord_info "chr5,154705626,154705727,+"; Error, chr discrepancy in gtf info for chr5 ENSEMBL exon 160008445 160008546 . + . gene_id "Y_RNA^ENSG00000199398.1"; transcript_id "ENST00000362528.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.25-201"; exon_number 1; exon_id "ENSE00001807068.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199398.1"; orig_coord_info "chr5,160008445,160008546,+"; Error, chr discrepancy in gtf info for chr5 ENSEMBL exon 168791498 168791610 . + . gene_id "Y_RNA^ENSG00000202345.1"; transcript_id "ENST00000365475.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.356-201"; exon_number 1; exon_id "ENSE00001807950.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000202345.1"; orig_coord_info "chr5,168791498,168791610,+"; Error, chr discrepancy in gtf info for chr5 ENSEMBL exon 172779982 172780094 . - . gene_id "Y_RNA^ENSG00000206741.1"; transcript_id "ENST00000384014.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.416-201"; exon_number 1; exon_id "ENSE00001808796.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206741.1"; orig_coord_info "chr5,172779982,172780094,-"; Error, chr discrepancy in gtf info for chr5 ENSEMBL exon 173052452 173052555 . - . gene_id "Y_RNA^ENSG00000207210.1"; transcript_id "ENST00000384481.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.504-201"; exon_number 1; exon_id "ENSE00001499489.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207210.1"; orig_coord_info "chr5,173052452,173052555,-"; Error, chr discrepancy in gtf info for chr5 ENSEMBL exon 173254190 173254290 . - . gene_id "Y_RNA^ENSG00000201277.1"; transcript_id "ENST00000364407.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.233-201"; exon_number 1; exon_id "ENSE00001809257.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201277.1"; orig_coord_info "chr5,173254190,173254290,-"; Error, chr discrepancy in gtf info for chr5 ENSEMBL exon 176556704 176556805 . + . gene_id "Y_RNA^ENSG00000207420.1"; transcript_id "ENST00000384689.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.560-201"; exon_number 1; exon_id "ENSE00001807540.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207420.1"; orig_coord_info "chr5,176556704,176556805,+"; Error, chr discrepancy in gtf info for chr5 ENSEMBL exon 179847035 179847130 . - . gene_id "Y_RNA^ENSG00000252202.1"; transcript_id "ENST00000516393.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.676-201"; exon_number 1; exon_id "ENSE00002088670.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000252202.1"; orig_coord_info "chr5,179847035,179847130,-"; Error, chr discrepancy in gtf info for chr5 ENSEMBL exon 180909838 180909927 . + . gene_id "Y_RNA^ENSG00000222852.1"; transcript_id "ENST00000410920.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.617-201"; exon_number 1; exon_id "ENSE00001807717.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000222852.1"; orig_coord_info "chr5,180909838,180909927,+"; Error, chr discrepancy in gtf info for chr6 ENSEMBL exon 7187582 7187686 . - . gene_id "Y_RNA^ENSG00000201483.1"; transcript_id "ENST00000364613.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.258-201"; exon_number 1; exon_id "ENSE00001439376.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201483.1"; orig_coord_info "chr6,7187582,7187686,-"; Error, chr discrepancy in gtf info for chr6 ENSEMBL exon 10674658 10674768 . - . gene_id "Y_RNA^ENSG00000201048.1"; transcript_id "ENST00000364178.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.213-201"; exon_number 1; exon_id "ENSE00001438941.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201048.1"; orig_coord_info "chr6,10674658,10674768,-"; Error, chr discrepancy in gtf info for chr6 ENSEMBL exon 16232231 16232330 . - . gene_id "Y_RNA^ENSG00000207193.1"; transcript_id "ENST00000384464.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.499-201"; exon_number 1; exon_id "ENSE00001499472.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207193.1"; orig_coord_info "chr6,16232231,16232330,-"; Error, chr discrepancy in gtf info for chr6 ENSEMBL exon 17737458 17737556 . - . gene_id "Y_RNA^ENSG00000201442.2"; transcript_id "ENST00000364572.2"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.254-201"; exon_number 1; exon_id "ENSE00001979882.2"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201442.2"; orig_coord_info "chr6,17737458,17737556,-"; Error, chr discrepancy in gtf info for chr6 ENSEMBL exon 18273165 18273266 . - . gene_id "Y_RNA^ENSG00000199715.1"; transcript_id "ENST00000362845.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.64-201"; exon_number 1; exon_id "ENSE00001981750.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199715.1"; orig_coord_info "chr6,18273165,18273266,-"; Error, chr discrepancy in gtf info for chr6 ENSEMBL exon 20500175 20500276 . + . gene_id "Y_RNA^ENSG00000201683.1"; transcript_id "ENST00000364813.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.286-201"; exon_number 1; exon_id "ENSE00001969763.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201683.1"; orig_coord_info "chr6,20500175,20500276,+"; Error, chr discrepancy in gtf info for chr6 ENSEMBL exon 25287432 25287533 . - . gene_id "Y_RNA^ENSG00000207286.1"; transcript_id "ENST00000384556.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.520-201"; exon_number 1; exon_id "ENSE00001964906.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207286.1"; orig_coord_info "chr6,25287432,25287533,-"; Error, chr discrepancy in gtf info for chr6 ENSEMBL exon 29750371 29750472 . + . gene_id "Y_RNA^ENSG00000199290.1"; transcript_id "ENST00000362420.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.15-201"; exon_number 1; exon_id "ENSE00001808445.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199290.1"; orig_coord_info "chr6,29750371,29750472,+"; Error, chr discrepancy in gtf info for chr6 ENSEMBL exon 30736304 30736414 . - . gene_id "Y_RNA^ENSG00000201988.2"; transcript_id "ENST00000365118.2"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.316-201"; exon_number 1; exon_id "ENSE00001808725.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201988.2"; orig_coord_info "chr6,30736304,30736414,-"; Error, chr discrepancy in gtf info for chr6 ENSEMBL exon 30932618 30932709 . - . gene_id "Y_RNA^ENSG00000252761.1"; transcript_id "ENST00000516952.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.709-201"; exon_number 1; exon_id "ENSE00002089229.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000252761.1"; orig_coord_info "chr6,30932618,30932709,-"; Error, chr discrepancy in gtf info for chr6 ENSEMBL exon 31402152 31402250 . - . gene_id "Y_RNA^ENSG00000199332.1"; transcript_id "ENST00000362462.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.19-201"; exon_number 1; exon_id "ENSE00001437225.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199332.1"; orig_coord_info "chr6,31402152,31402250,-"; Error, chr discrepancy in gtf info for chr6 ENSEMBL exon 31496689 31496790 . - . gene_id "Y_RNA^ENSG00000201680.1"; transcript_id "ENST00000383850.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.285-201"; exon_number 1; exon_id "ENSE00001807358.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201680.1"; orig_coord_info "chr6,31496689,31496790,-"; Error, chr discrepancy in gtf info for chr6 ENSEMBL exon 31663288 31663401 . + . gene_id "Y_RNA^ENSG00000201207.1"; transcript_id "ENST00000364337.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.226-201"; exon_number 1; exon_id "ENSE00001439100.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201207.1"; orig_coord_info "chr6,31663288,31663401,+"; Error, chr discrepancy in gtf info for chr6 ENSEMBL exon 31778817 31778905 . - . gene_id "Y_RNA^ENSG00000201555.1"; transcript_id "ENST00000364685.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.269-201"; exon_number 1; exon_id "ENSE00001439448.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201555.1"; orig_coord_info "chr6,31778817,31778905,-"; Error, chr discrepancy in gtf info for chr6 ENSEMBL exon 34821445 34821542 . + . gene_id "Y_RNA^ENSG00000206717.1"; transcript_id "ENST00000383990.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.409-201"; exon_number 1; exon_id "ENSE00001499000.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206717.1"; orig_coord_info "chr6,34821445,34821542,+"; Error, chr discrepancy in gtf info for chr6 ENSEMBL exon 36672838 36672944 . + . gene_id "Y_RNA^ENSG00000251864.1"; transcript_id "ENST00000516055.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.664-201"; exon_number 1; exon_id "ENSE00002088332.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000251864.1"; orig_coord_info "chr6,36672838,36672944,+"; Error, chr discrepancy in gtf info for chr6 ENSEMBL exon 38565950 38566055 . + . gene_id "Y_RNA^ENSG00000199938.1"; transcript_id "ENST00000363068.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.94-201"; exon_number 1; exon_id "ENSE00001437831.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199938.1"; orig_coord_info "chr6,38565950,38566055,+"; Error, chr discrepancy in gtf info for chr6 ENSEMBL exon 41917416 41917526 . - . gene_id "Y_RNA^ENSG00000207371.1"; transcript_id "ENST00000384641.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.542-201"; exon_number 1; exon_id "ENSE00001499649.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207371.1"; orig_coord_info "chr6,41917416,41917526,-"; Error, chr discrepancy in gtf info for chr6 ENSEMBL exon 47489067 47489170 . + . gene_id "Y_RNA^ENSG00000199762.1"; transcript_id "ENST00000362892.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.71-201"; exon_number 1; exon_id "ENSE00001437655.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199762.1"; orig_coord_info "chr6,47489067,47489170,+"; Error, chr discrepancy in gtf info for chr6 ENSEMBL exon 67625356 67625464 . + . gene_id "Y_RNA^ENSG00000206672.1"; transcript_id "ENST00000383945.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.395-201"; exon_number 1; exon_id "ENSE00001807032.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206672.1"; orig_coord_info "chr6,67625356,67625464,+"; Error, chr discrepancy in gtf info for chr6 ENSEMBL exon 75928513 75928625 . + . gene_id "Y_RNA^ENSG00000200040.1"; transcript_id "ENST00000363170.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.102-201"; exon_number 1; exon_id "ENSE00001806944.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200040.1"; orig_coord_info "chr6,75928513,75928625,+"; Error, chr discrepancy in gtf info for chr6 ENSEMBL exon 79301963 79302066 . - . gene_id "Y_RNA^ENSG00000201464.1"; transcript_id "ENST00000364594.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.256-201"; exon_number 1; exon_id "ENSE00001439357.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201464.1"; orig_coord_info "chr6,79301963,79302066,-"; Error, chr discrepancy in gtf info for chr6 ENSEMBL exon 85777639 85777755 . - . gene_id "Y_RNA^ENSG00000200427.1"; transcript_id "ENST00000363557.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.148-201"; exon_number 1; exon_id "ENSE00001438320.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200427.1"; orig_coord_info "chr6,85777639,85777755,-"; Error, chr discrepancy in gtf info for chr6 ENSEMBL exon 87826173 87826285 . - . gene_id "Y_RNA^ENSG00000207131.1"; transcript_id "ENST00000384402.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.487-201"; exon_number 1; exon_id "ENSE00001994330.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207131.1"; orig_coord_info "chr6,87826173,87826285,-"; Error, chr discrepancy in gtf info for chr6 ENSEMBL exon 89841329 89841424 . + . gene_id "Y_RNA^ENSG00000199630.1"; transcript_id "ENST00000362760.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.52-201"; exon_number 1; exon_id "ENSE00001437523.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199630.1"; orig_coord_info "chr6,89841329,89841424,+"; Error, chr discrepancy in gtf info for chr6 ENSEMBL exon 89898283 89898392 . - . gene_id "Y_RNA^ENSG00000252891.1"; transcript_id "ENST00000517082.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.715-201"; exon_number 1; exon_id "ENSE00002089359.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000252891.1"; orig_coord_info "chr6,89898283,89898392,-"; Error, chr discrepancy in gtf info for chr6 ENSEMBL exon 99526097 99526205 . + . gene_id "Y_RNA^ENSG00000274603.1"; transcript_id "ENST00000384290.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.785-201"; exon_number 1; exon_id "ENSE00001499299.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000274603.1"; orig_coord_info "chr6,99526097,99526205,+"; Error, chr discrepancy in gtf info for chr6 ENSEMBL exon 99642237 99642347 . - . gene_id "Y_RNA^ENSG00000199303.1"; transcript_id "ENST00000362433.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.17-201"; exon_number 1; exon_id "ENSE00001437196.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199303.1"; orig_coord_info "chr6,99642237,99642347,-"; Error, chr discrepancy in gtf info for chr6 ENSEMBL exon 106420706 106420807 . + . gene_id "Y_RNA^ENSG00000207499.1"; transcript_id "ENST00000384768.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.575-201"; exon_number 1; exon_id "ENSE00002011129.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207499.1"; orig_coord_info "chr6,106420706,106420807,+"; Error, chr discrepancy in gtf info for chr6 ENSEMBL exon 106454828 106454929 . + . gene_id "Y_RNA^ENSG00000200314.1"; transcript_id "ENST00000363444.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.136-201"; exon_number 1; exon_id "ENSE00001988579.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200314.1"; orig_coord_info "chr6,106454828,106454929,+"; Error, chr discrepancy in gtf info for chr6 ENSEMBL exon 108060818 108060930 . + . gene_id "Y_RNA^ENSG00000238490.1"; transcript_id "ENST00000364811.2"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.634-201"; exon_number 1; exon_id "ENSE00002012070.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000238490.1"; orig_coord_info "chr6,108060818,108060930,+"; Error, chr discrepancy in gtf info for chr6 ENSEMBL exon 119057880 119057974 . + . gene_id "Y_RNA^ENSG00000222649.1"; transcript_id "ENST00000410717.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.612-201"; exon_number 1; exon_id "ENSE00001590535.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000222649.1"; orig_coord_info "chr6,119057880,119057974,+"; Error, chr discrepancy in gtf info for chr6 ENSEMBL exon 121378797 121378898 . - . gene_id "Y_RNA^ENSG00000207403.1"; transcript_id "ENST00000384672.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.554-201"; exon_number 1; exon_id "ENSE00001807577.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207403.1"; orig_coord_info "chr6,121378797,121378898,-"; Error, chr discrepancy in gtf info for chr6 ENSEMBL exon 128584390 128584491 . + . gene_id "Y_RNA^ENSG00000206982.1"; transcript_id "ENST00000384255.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.460-201"; exon_number 1; exon_id "ENSE00001807544.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206982.1"; orig_coord_info "chr6,128584390,128584491,+"; Error, chr discrepancy in gtf info for chr6 ENSEMBL exon 128761717 128761808 . - . gene_id "Y_RNA^ENSG00000202200.1"; transcript_id "ENST00000365330.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.340-201"; exon_number 1; exon_id "ENSE00001440093.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000202200.1"; orig_coord_info "chr6,128761717,128761808,-"; Error, chr discrepancy in gtf info for chr6 ENSEMBL exon 130573996 130574112 . - . gene_id "Y_RNA^ENSG00000202438.1"; transcript_id "ENST00000365568.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.369-201"; exon_number 1; exon_id "ENSE00001440331.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000202438.1"; orig_coord_info "chr6,130573996,130574112,-"; Error, chr discrepancy in gtf info for chr6 ENSEMBL exon 134283092 134283193 . + . gene_id "Y_RNA^ENSG00000201309.1"; transcript_id "ENST00000364439.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.237-201"; exon_number 1; exon_id "ENSE00001973749.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201309.1"; orig_coord_info "chr6,134283092,134283193,+"; Error, chr discrepancy in gtf info for chr6 ENSEMBL exon 135474504 135474609 . - . gene_id "Y_RNA^ENSG00000201012.1"; transcript_id "ENST00000364142.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.207-201"; exon_number 1; exon_id "ENSE00001438905.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201012.1"; orig_coord_info "chr6,135474504,135474609,-"; Error, chr discrepancy in gtf info for chr6 ENSEMBL exon 136934765 136934866 . + . gene_id "Y_RNA^ENSG00000207247.1"; transcript_id "ENST00000384518.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.512-201"; exon_number 1; exon_id "ENSE00002018300.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207247.1"; orig_coord_info "chr6,136934765,136934866,+"; Error, chr discrepancy in gtf info for chr6 ENSEMBL exon 137784374 137784486 . + . gene_id "Y_RNA^ENSG00000207300.1"; transcript_id "ENST00000384570.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.525-201"; exon_number 1; exon_id "ENSE00002008563.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207300.1"; orig_coord_info "chr6,137784374,137784486,+"; Error, chr discrepancy in gtf info for chr6 ENSEMBL exon 149631437 149631549 . + . gene_id "Y_RNA^ENSG00000207292.1"; transcript_id "ENST00000384562.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.522-201"; exon_number 1; exon_id "ENSE00001992931.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207292.1"; orig_coord_info "chr6,149631437,149631549,+"; Error, chr discrepancy in gtf info for chr6 ENSEMBL exon 151378000 151378099 . - . gene_id "Y_RNA^ENSG00000252615.1"; transcript_id "ENST00000516806.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.700-201"; exon_number 1; exon_id "ENSE00002089083.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000252615.1"; orig_coord_info "chr6,151378000,151378099,-"; Error, chr discrepancy in gtf info for chr7 ENSEMBL exon 4811188 4811289 . - . gene_id "Y_RNA^ENSG00000206895.1"; transcript_id "ENST00000384168.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.445-201"; exon_number 1; exon_id "ENSE00001807039.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206895.1"; orig_coord_info "chr7,4811188,4811289,-"; Error, chr discrepancy in gtf info for chr7 ENSEMBL exon 6004283 6004385 . - . gene_id "Y_RNA^ENSG00000201990.1"; transcript_id "ENST00000365120.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.317-201"; exon_number 1; exon_id "ENSE00001439883.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201990.1"; orig_coord_info "chr7,6004283,6004385,-"; Error, chr discrepancy in gtf info for chr7 ENSEMBL exon 6212638 6212740 . - . gene_id "Y_RNA^ENSG00000202273.1"; transcript_id "ENST00000365403.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.348-201"; exon_number 1; exon_id "ENSE00001440166.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000202273.1"; orig_coord_info "chr7,6212638,6212740,-"; Error, chr discrepancy in gtf info for chr7 ENSEMBL exon 7102573 7102681 . - . gene_id "Y_RNA^ENSG00000201218.1"; transcript_id "ENST00000364348.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.230-201"; exon_number 1; exon_id "ENSE00001439111.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201218.1"; orig_coord_info "chr7,7102573,7102681,-"; Error, chr discrepancy in gtf info for chr7 ENSEMBL exon 10901978 10902074 . + . gene_id "Y_RNA^ENSG00000201774.1"; transcript_id "ENST00000364904.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.292-201"; exon_number 1; exon_id "ENSE00001809080.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201774.1"; orig_coord_info "chr7,10901978,10902074,+"; Error, chr discrepancy in gtf info for chr7 ENSEMBL exon 14010669 14010763 . - . gene_id "Y_RNA^ENSG00000252374.1"; transcript_id "ENST00000516565.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.688-201"; exon_number 1; exon_id "ENSE00002088842.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000252374.1"; orig_coord_info "chr7,14010669,14010763,-"; Error, chr discrepancy in gtf info for chr7 ENSEMBL exon 23491792 23491893 . - . gene_id "Y_RNA^ENSG00000200847.1"; transcript_id "ENST00000363977.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.192-201"; exon_number 1; exon_id "ENSE00001808531.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200847.1"; orig_coord_info "chr7,23491792,23491893,-"; Error, chr discrepancy in gtf info for chr7 ENSEMBL exon 36337667 36337778 . - . gene_id "Y_RNA^ENSG00000201432.1"; transcript_id "ENST00000364562.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.253-201"; exon_number 1; exon_id "ENSE00001439325.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201432.1"; orig_coord_info "chr7,36337667,36337778,-"; Error, chr discrepancy in gtf info for chr7 ENSEMBL exon 37435115 37435216 . + . gene_id "Y_RNA^ENSG00000201566.1"; transcript_id "ENST00000364696.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.272-201"; exon_number 1; exon_id "ENSE00001808002.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201566.1"; orig_coord_info "chr7,37435115,37435216,+"; Error, chr discrepancy in gtf info for chr7 ENSEMBL exon 40128121 40128232 . - . gene_id "Y_RNA^ENSG00000199273.1"; transcript_id "ENST00000362403.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.13-201"; exon_number 1; exon_id "ENSE00001437166.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199273.1"; orig_coord_info "chr7,40128121,40128232,-"; Error, chr discrepancy in gtf info for chr7 ENSEMBL exon 43096732 43096844 . + . gene_id "Y_RNA^ENSG00000201933.1"; transcript_id "ENST00000365063.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.310-201"; exon_number 1; exon_id "ENSE00001439826.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201933.1"; orig_coord_info "chr7,43096732,43096844,+"; Error, chr discrepancy in gtf info for chr7 ENSEMBL exon 67297653 67297754 . - . gene_id "Y_RNA^ENSG00000201565.1"; transcript_id "ENST00000364695.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.271-201"; exon_number 1; exon_id "ENSE00001809083.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201565.1"; orig_coord_info "chr7,67297653,67297754,-"; Error, chr discrepancy in gtf info for chr7 ENSEMBL exon 69507510 69507622 . - . gene_id "Y_RNA^ENSG00000200857.1"; transcript_id "ENST00000363987.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.195-201"; exon_number 1; exon_id "ENSE00001807306.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200857.1"; orig_coord_info "chr7,69507510,69507622,-"; Error, chr discrepancy in gtf info for chr7 ENSEMBL exon 72983360 72983461 . - . gene_id "Y_RNA^ENSG00000276178.1"; transcript_id "ENST00000364992.2"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.799-201"; exon_number 1; exon_id "ENSE00001807020.2"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000276178.1"; orig_coord_info "chr7,72983360,72983461,-"; Error, chr discrepancy in gtf info for chr7 ENSEMBL exon 73011144 73011245 . + . gene_id "Y_RNA^ENSG00000201282.1"; transcript_id "ENST00000364412.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.235-201"; exon_number 1; exon_id "ENSE00001809225.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201282.1"; orig_coord_info "chr7,73011144,73011245,+"; Error, chr discrepancy in gtf info for chr7 ENSEMBL exon 73039085 73039186 . + . gene_id "Y_RNA^ENSG00000273927.1"; transcript_id "ENST00000516982.2"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.777-201"; exon_number 1; exon_id "ENSE00002089259.2"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000273927.1"; orig_coord_info "chr7,73039085,73039186,+"; Error, chr discrepancy in gtf info for chr7 ENSEMBL exon 73067231 73067332 . + . gene_id "Y_RNA^ENSG00000274984.1"; transcript_id "ENST00000622480.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.789-201"; exon_number 1; exon_id "ENSE00003727684.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000274984.1"; orig_coord_info "chr7,73067231,73067332,+"; Error, chr discrepancy in gtf info for chr7 ENSEMBL exon 73095357 73095458 . + . gene_id "Y_RNA^ENSG00000199913.1"; transcript_id "ENST00000363043.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.92-201"; exon_number 1; exon_id "ENSE00001808809.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199913.1"; orig_coord_info "chr7,73095357,73095458,+"; Error, chr discrepancy in gtf info for chr7 ENSEMBL exon 73403788 73403889 . - . gene_id "Y_RNA^ENSG00000202035.1"; transcript_id "ENST00000365165.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.324-201"; exon_number 1; exon_id "ENSE00001807660.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000202035.1"; orig_coord_info "chr7,73403788,73403889,-"; Error, chr discrepancy in gtf info for chr7 ENSEMBL exon 74895816 74895917 . + . gene_id "Y_RNA^ENSG00000239069.1"; transcript_id "ENST00000459002.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.650-201"; exon_number 1; exon_id "ENSE00001808563.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000239069.1"; orig_coord_info "chr7,74895816,74895917,+"; Error, chr discrepancy in gtf info for chr7 ENSEMBL exon 75297990 75298091 . - . gene_id "Y_RNA^ENSG00000267828.1"; transcript_id "ENST00000598668.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.771-201"; exon_number 1; exon_id "ENSE00003033148.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000267828.1"; orig_coord_info "chr7,75297990,75298091,-"; Error, chr discrepancy in gtf info for chr7 ENSEMBL exon 75325959 75326060 . - . gene_id "Y_RNA^ENSG00000202021.1"; transcript_id "ENST00000365151.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.322-201"; exon_number 1; exon_id "ENSE00001807876.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000202021.1"; orig_coord_info "chr7,75325959,75326060,-"; Error, chr discrepancy in gtf info for chr7 ENSEMBL exon 75353885 75353986 . - . gene_id "Y_RNA^ENSG00000199870.1"; transcript_id "ENST00000363000.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.82-201"; exon_number 1; exon_id "ENSE00001808094.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199870.1"; orig_coord_info "chr7,75353885,75353986,-"; Error, chr discrepancy in gtf info for chr7 ENSEMBL exon 75381638 75381739 . + . gene_id "Y_RNA^ENSG00000275930.1"; transcript_id "ENST00000364268.2"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.796-201"; exon_number 1; exon_id "ENSE00001807177.2"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000275930.1"; orig_coord_info "chr7,75381638,75381739,+"; Error, chr discrepancy in gtf info for chr7 ENSEMBL exon 75513025 75513126 . - . gene_id "Y_RNA^ENSG00000200874.1"; transcript_id "ENST00000364004.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.197-201"; exon_number 1; exon_id "ENSE00001806821.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200874.1"; orig_coord_info "chr7,75513025,75513126,-"; Error, chr discrepancy in gtf info for chr7 ENSEMBL exon 76523605 76523706 . + . gene_id "Y_RNA^ENSG00000238560.1"; transcript_id "ENST00000362637.2"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.636-201"; exon_number 1; exon_id "ENSE00001807382.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000238560.1"; orig_coord_info "chr7,76523605,76523706,+"; Error, chr discrepancy in gtf info for chr7 ENSEMBL exon 77013583 77013684 . + . gene_id "Y_RNA^ENSG00000201885.1"; transcript_id "ENST00000365015.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.306-201"; exon_number 1; exon_id "ENSE00001808178.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201885.1"; orig_coord_info "chr7,77013583,77013684,+"; Error, chr discrepancy in gtf info for chr7 ENSEMBL exon 77041647 77041748 . + . gene_id "Y_RNA^ENSG00000201959.1"; transcript_id "ENST00000365089.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.312-201"; exon_number 1; exon_id "ENSE00001808345.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201959.1"; orig_coord_info "chr7,77041647,77041748,+"; Error, chr discrepancy in gtf info for chr7 ENSEMBL exon 77895880 77895992 . + . gene_id "Y_RNA^ENSG00000222432.1"; transcript_id "ENST00000410500.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.601-201"; exon_number 1; exon_id "ENSE00001590318.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000222432.1"; orig_coord_info "chr7,77895880,77895992,+"; Error, chr discrepancy in gtf info for chr7 ENSEMBL exon 87218611 87218712 . - . gene_id "Y_RNA^ENSG00000200397.1"; transcript_id "ENST00000363527.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.145-201"; exon_number 1; exon_id "ENSE00001807281.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200397.1"; orig_coord_info "chr7,87218611,87218712,-"; Error, chr discrepancy in gtf info for chr7 ENSEMBL exon 90251923 90252020 . + . gene_id "Y_RNA^ENSG00000207488.1"; transcript_id "ENST00000384757.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.572-201"; exon_number 1; exon_id "ENSE00001809284.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207488.1"; orig_coord_info "chr7,90251923,90252020,+"; Error, chr discrepancy in gtf info for chr7 ENSEMBL exon 92202243 92202334 . - . gene_id "Y_RNA^ENSG00000200769.1"; transcript_id "ENST00000363899.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.186-201"; exon_number 1; exon_id "ENSE00001438662.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200769.1"; orig_coord_info "chr7,92202243,92202334,-"; Error, chr discrepancy in gtf info for chr7 ENSEMBL exon 99936610 99936711 . + . gene_id "Y_RNA^ENSG00000199711.1"; transcript_id "ENST00000362841.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.63-201"; exon_number 1; exon_id "ENSE00001807749.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199711.1"; orig_coord_info "chr7,99936610,99936711,+"; Error, chr discrepancy in gtf info for chr7 ENSEMBL exon 100330777 100330877 . - . gene_id "Y_RNA^ENSG00000201913.1"; transcript_id "ENST00000365043.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.308-201"; exon_number 1; exon_id "ENSE00001439806.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201913.1"; orig_coord_info "chr7,100330777,100330877,-"; Error, chr discrepancy in gtf info for chr7 ENSEMBL exon 102336869 102336970 . + . gene_id "Y_RNA^ENSG00000200552.1"; transcript_id "ENST00000363682.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.161-201"; exon_number 1; exon_id "ENSE00001806949.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200552.1"; orig_coord_info "chr7,102336869,102336970,+"; Error, chr discrepancy in gtf info for chr7 ENSEMBL exon 103433461 103433561 . - . gene_id "Y_RNA^ENSG00000251852.1"; transcript_id "ENST00000516043.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.663-201"; exon_number 1; exon_id "ENSE00002088320.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000251852.1"; orig_coord_info "chr7,103433461,103433561,-"; Error, chr discrepancy in gtf info for chr7 ENSEMBL exon 103434994 103435092 . - . gene_id "Y_RNA^ENSG00000252047.1"; transcript_id "ENST00000516238.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.669-201"; exon_number 1; exon_id "ENSE00002088515.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000252047.1"; orig_coord_info "chr7,103434994,103435092,-"; Error, chr discrepancy in gtf info for chr7 ENSEMBL exon 115207894 115207996 . - . gene_id "Y_RNA^ENSG00000199764.1"; transcript_id "ENST00000362894.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.72-201"; exon_number 1; exon_id "ENSE00001437657.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199764.1"; orig_coord_info "chr7,115207894,115207996,-"; Error, chr discrepancy in gtf info for chr7 ENSEMBL exon 115833273 115833373 . - . gene_id "Y_RNA^ENSG00000199224.1"; transcript_id "ENST00000362354.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.9-201"; exon_number 1; exon_id "ENSE00001809281.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199224.1"; orig_coord_info "chr7,115833273,115833373,-"; Error, chr discrepancy in gtf info for chr7 ENSEMBL exon 116909877 116909964 . - . gene_id "Y_RNA^ENSG00000252115.1"; transcript_id "ENST00000516306.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.673-201"; exon_number 1; exon_id "ENSE00002088583.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000252115.1"; orig_coord_info "chr7,116909877,116909964,-"; Error, chr discrepancy in gtf info for chr7 ENSEMBL exon 129954693 129954794 . + . gene_id "Y_RNA^ENSG00000199516.1"; transcript_id "ENST00000362646.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.41-201"; exon_number 1; exon_id "ENSE00001806895.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199516.1"; orig_coord_info "chr7,129954693,129954794,+"; Error, chr discrepancy in gtf info for chr7 ENSEMBL exon 136129980 136130081 . - . gene_id "Y_RNA^ENSG00000206705.1"; transcript_id "ENST00000383978.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.404-201"; exon_number 1; exon_id "ENSE00001807446.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206705.1"; orig_coord_info "chr7,136129980,136130081,-"; Error, chr discrepancy in gtf info for chr7 ENSEMBL exon 138175045 138175136 . + . gene_id "Y_RNA^ENSG00000252820.1"; transcript_id "ENST00000517011.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.712-201"; exon_number 1; exon_id "ENSE00002089288.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000252820.1"; orig_coord_info "chr7,138175045,138175136,+"; Error, chr discrepancy in gtf info for chr7 ENSEMBL exon 140094697 140094792 . - . gene_id "Y_RNA^ENSG00000251728.1"; transcript_id "ENST00000515919.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.655-201"; exon_number 1; exon_id "ENSE00002088196.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000251728.1"; orig_coord_info "chr7,140094697,140094792,-"; Error, chr discrepancy in gtf info for chr7 ENSEMBL exon 140609847 140609955 . + . gene_id "Y_RNA^ENSG00000201354.1"; transcript_id "ENST00000364484.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.244-201"; exon_number 1; exon_id "ENSE00001439247.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201354.1"; orig_coord_info "chr7,140609847,140609955,+"; Error, chr discrepancy in gtf info for chr7 ENSEMBL exon 146311720 146311822 . + . gene_id "Y_RNA^ENSG00000274118.1"; transcript_id "ENST00000620301.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.781-201"; exon_number 1; exon_id "ENSE00003754256.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000274118.1"; orig_coord_info "chr7,146311720,146311822,+"; Error, chr discrepancy in gtf info for chr7 ENSEMBL exon 151916331 151916418 . + . gene_id "Y_RNA^ENSG00000222941.2"; transcript_id "ENST00000411009.2"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.620-201"; exon_number 1; exon_id "ENSE00001590827.2"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000222941.2"; orig_coord_info "chr7,151916331,151916418,+"; Error, chr discrepancy in gtf info for chr7 ENSEMBL exon 152402780 152402893 . + . gene_id "Y_RNA^ENSG00000253088.1"; transcript_id "ENST00000517279.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.722-201"; exon_number 1; exon_id "ENSE00002089556.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000253088.1"; orig_coord_info "chr7,152402780,152402893,+"; Error, chr discrepancy in gtf info for chr7 ENSEMBL exon 156186122 156186223 . - . gene_id "Y_RNA^ENSG00000207061.1"; transcript_id "ENST00000384333.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.473-201"; exon_number 1; exon_id "ENSE00001808138.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207061.1"; orig_coord_info "chr7,156186122,156186223,-"; Error, chr discrepancy in gtf info for chr8 ENSEMBL exon 13160178 13160279 . + . gene_id "Y_RNA^ENSG00000200630.1"; transcript_id "ENST00000363760.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.171-201"; exon_number 1; exon_id "ENSE00001807549.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200630.1"; orig_coord_info "chr8,13160178,13160279,+"; Error, chr discrepancy in gtf info for chr8 ENSEMBL exon 14332555 14332663 . + . gene_id "Y_RNA^ENSG00000206950.1"; transcript_id "ENST00000384223.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.453-201"; exon_number 1; exon_id "ENSE00001499232.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206950.1"; orig_coord_info "chr8,14332555,14332663,+"; Error, chr discrepancy in gtf info for chr8 ENSEMBL exon 38744020 38744131 . + . gene_id "Y_RNA^ENSG00000207258.1"; transcript_id "ENST00000384528.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.514-201"; exon_number 1; exon_id "ENSE00001807008.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207258.1"; orig_coord_info "chr8,38744020,38744131,+"; Error, chr discrepancy in gtf info for chr8 ENSEMBL exon 41803349 41803450 . + . gene_id "Y_RNA^ENSG00000207101.1"; transcript_id "ENST00000384373.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.481-201"; exon_number 1; exon_id "ENSE00001808863.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207101.1"; orig_coord_info "chr8,41803349,41803450,+"; Error, chr discrepancy in gtf info for chr8 ENSEMBL exon 42949388 42949495 . - . gene_id "Y_RNA^ENSG00000202514.1"; transcript_id "ENST00000365644.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.377-201"; exon_number 1; exon_id "ENSE00001440407.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000202514.1"; orig_coord_info "chr8,42949388,42949495,-"; Error, chr discrepancy in gtf info for chr8 ENSEMBL exon 47805079 47805179 . - . gene_id "Y_RNA^ENSG00000207450.1"; transcript_id "ENST00000384719.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.565-201"; exon_number 1; exon_id "ENSE00001499727.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207450.1"; orig_coord_info "chr8,47805079,47805179,-"; Error, chr discrepancy in gtf info for chr8 ENSEMBL exon 65592731 65592820 . + . gene_id "Y_RNA^ENSG00000200714.1"; transcript_id "ENST00000363844.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.179-201"; exon_number 1; exon_id "ENSE00001438607.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200714.1"; orig_coord_info "chr8,65592731,65592820,+"; Error, chr discrepancy in gtf info for chr8 ENSEMBL exon 66653469 66653576 . + . gene_id "Y_RNA^ENSG00000201365.1"; transcript_id "ENST00000364495.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.246-201"; exon_number 1; exon_id "ENSE00001439258.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201365.1"; orig_coord_info "chr8,66653469,66653576,+"; Error, chr discrepancy in gtf info for chr8 ENSEMBL exon 68223318 68223402 . - . gene_id "Y_RNA^ENSG00000252210.1"; transcript_id "ENST00000516401.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.677-201"; exon_number 1; exon_id "ENSE00002088678.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000252210.1"; orig_coord_info "chr8,68223318,68223402,-"; Error, chr discrepancy in gtf info for chr8 ENSEMBL exon 70780914 70781008 . - . gene_id "Y_RNA^ENSG00000223220.1"; transcript_id "ENST00000411288.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.626-201"; exon_number 1; exon_id "ENSE00001591106.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000223220.1"; orig_coord_info "chr8,70780914,70781008,-"; Error, chr discrepancy in gtf info for chr8 ENSEMBL exon 74376687 74376793 . + . gene_id "Y_RNA^ENSG00000207417.1"; transcript_id "ENST00000384686.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.559-201"; exon_number 1; exon_id "ENSE00001499694.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207417.1"; orig_coord_info "chr8,74376687,74376793,+"; Error, chr discrepancy in gtf info for chr8 ENSEMBL exon 80484589 80484683 . - . gene_id "Y_RNA^ENSG00000277604.1"; transcript_id "ENST00000516058.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.809-201"; exon_number 1; exon_id "ENSE00002088335.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000277604.1"; orig_coord_info "chr8,80484589,80484683,-"; Error, chr discrepancy in gtf info for chr8 ENSEMBL exon 94713715 94713812 . - . gene_id "Y_RNA^ENSG00000199701.1"; transcript_id "ENST00000362831.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.60-201"; exon_number 1; exon_id "ENSE00001809007.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199701.1"; orig_coord_info "chr8,94713715,94713812,-"; Error, chr discrepancy in gtf info for chr8 ENSEMBL exon 96309221 96309322 . - . gene_id "Y_RNA^ENSG00000199732.1"; transcript_id "ENST00000362862.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.66-201"; exon_number 1; exon_id "ENSE00001808110.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199732.1"; orig_coord_info "chr8,96309221,96309322,-"; Error, chr discrepancy in gtf info for chr8 ENSEMBL exon 97772313 97772425 . + . gene_id "Y_RNA^ENSG00000202399.1"; transcript_id "ENST00000365529.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.363-201"; exon_number 1; exon_id "ENSE00001809121.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000202399.1"; orig_coord_info "chr8,97772313,97772425,+"; Error, chr discrepancy in gtf info for chr8 ENSEMBL exon 99527826 99527927 . + . gene_id "Y_RNA^ENSG00000206699.1"; transcript_id "ENST00000383972.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.402-201"; exon_number 1; exon_id "ENSE00001808170.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206699.1"; orig_coord_info "chr8,99527826,99527927,+"; Error, chr discrepancy in gtf info for chr8 ENSEMBL exon 100158868 100158975 . + . gene_id "Y_RNA^ENSG00000202310.1"; transcript_id "ENST00000365440.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.353-201"; exon_number 1; exon_id "ENSE00001440203.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000202310.1"; orig_coord_info "chr8,100158868,100158975,+"; Error, chr discrepancy in gtf info for chr8 ENSEMBL exon 100185138 100185239 . + . gene_id "Y_RNA^ENSG00000199667.1"; transcript_id "ENST00000362797.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.55-201"; exon_number 1; exon_id "ENSE00001809119.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199667.1"; orig_coord_info "chr8,100185138,100185239,+"; Error, chr discrepancy in gtf info for chr8 ENSEMBL exon 100755099 100755195 . - . gene_id "Y_RNA^ENSG00000202001.2"; transcript_id "ENST00000365131.2"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.318-201"; exon_number 1; exon_id "ENSE00001439894.2"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000202001.2"; orig_coord_info "chr8,100755099,100755195,-"; Error, chr discrepancy in gtf info for chr8 ENSEMBL exon 102950467 102950564 . - . gene_id "Y_RNA^ENSG00000201216.1"; transcript_id "ENST00000364346.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.228-201"; exon_number 1; exon_id "ENSE00001439109.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201216.1"; orig_coord_info "chr8,102950467,102950564,-"; Error, chr discrepancy in gtf info for chr8 ENSEMBL exon 105929126 105929238 . - . gene_id "Y_RNA^ENSG00000201627.1"; transcript_id "ENST00000364757.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.278-201"; exon_number 1; exon_id "ENSE00001439520.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201627.1"; orig_coord_info "chr8,105929126,105929238,-"; Error, chr discrepancy in gtf info for chr8 ENSEMBL exon 113950886 113950998 . + . gene_id "Y_RNA^ENSG00000206719.1"; transcript_id "ENST00000383992.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.410-201"; exon_number 1; exon_id "ENSE00001808919.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206719.1"; orig_coord_info "chr8,113950886,113950998,+"; Error, chr discrepancy in gtf info for chr9 ENSEMBL exon 12885321 12885417 . + . gene_id "Y_RNA^ENSG00000222658.1"; transcript_id "ENST00000410726.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.613-201"; exon_number 1; exon_id "ENSE00001808003.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000222658.1"; orig_coord_info "chr9,12885321,12885417,+"; Error, chr discrepancy in gtf info for chr9 ENSEMBL exon 19089593 19089688 . + . gene_id "Y_RNA^ENSG00000201118.1"; transcript_id "ENST00000364248.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.221-201"; exon_number 1; exon_id "ENSE00001439011.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201118.1"; orig_coord_info "chr9,19089593,19089688,+"; Error, chr discrepancy in gtf info for chr9 ENSEMBL exon 21160235 21160336 . - . gene_id "Y_RNA^ENSG00000199635.1"; transcript_id "ENST00000362765.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.53-201"; exon_number 1; exon_id "ENSE00001806921.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199635.1"; orig_coord_info "chr9,21160235,21160336,-"; Error, chr discrepancy in gtf info for chr9 ENSEMBL exon 32820261 32820350 . + . gene_id "Y_RNA^ENSG00000272113.2"; transcript_id "ENST00000607168.2"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.773-201"; exon_number 1; exon_id "ENSE00003698356.2"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000272113.2"; orig_coord_info "chr9,32820261,32820350,+"; Error, chr discrepancy in gtf info for chr9 ENSEMBL exon 33352788 33352874 . - . gene_id "Y_RNA^ENSG00000200544.1"; transcript_id "ENST00000363674.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.159-201"; exon_number 1; exon_id "ENSE00001438437.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200544.1"; orig_coord_info "chr9,33352788,33352874,-"; Error, chr discrepancy in gtf info for chr9 ENSEMBL exon 33830978 33831078 . + . gene_id "Y_RNA^ENSG00000200834.1"; transcript_id "ENST00000363964.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.190-201"; exon_number 1; exon_id "ENSE00001808542.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200834.1"; orig_coord_info "chr9,33830978,33831078,+"; Error, chr discrepancy in gtf info for chr9 ENSEMBL exon 34389943 34390051 . - . gene_id "Y_RNA^ENSG00000207032.1"; transcript_id "ENST00000384305.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.469-201"; exon_number 1; exon_id "ENSE00001499314.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207032.1"; orig_coord_info "chr9,34389943,34390051,-"; Error, chr discrepancy in gtf info for chr9 ENSEMBL exon 37160137 37160237 . + . gene_id "Y_RNA^ENSG00000200502.1"; transcript_id "ENST00000363632.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.155-201"; exon_number 1; exon_id "ENSE00001438395.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200502.1"; orig_coord_info "chr9,37160137,37160237,+"; Error, chr discrepancy in gtf info for chr9 ENSEMBL exon 37322259 37322371 . + . gene_id "Y_RNA^ENSG00000206784.1"; transcript_id "ENST00000384057.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.423-201"; exon_number 1; exon_id "ENSE00001808176.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206784.1"; orig_coord_info "chr9,37322259,37322371,+"; Error, chr discrepancy in gtf info for chr9 ENSEMBL exon 41672295 41672406 . - . gene_id "Y_RNA^ENSG00000278028.1"; transcript_id "ENST00000616655.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.815-201"; exon_number 1; exon_id "ENSE00003744035.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000278028.1"; orig_coord_info "chr9,41672295,41672406,-"; Error, chr discrepancy in gtf info for chr9 ENSEMBL exon 61642383 61642494 . + . gene_id "Y_RNA^ENSG00000238933.1"; transcript_id "ENST00000459194.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.647-201"; exon_number 1; exon_id "ENSE00001807563.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000238933.1"; orig_coord_info "chr9,61642383,61642494,+"; Error, chr discrepancy in gtf info for chr9 ENSEMBL exon 61883640 61883751 . - . gene_id "Y_RNA^ENSG00000238749.1"; transcript_id "ENST00000459296.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.640-201"; exon_number 1; exon_id "ENSE00001807398.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000238749.1"; orig_coord_info "chr9,61883640,61883751,-"; Error, chr discrepancy in gtf info for chr9 ENSEMBL exon 65573384 65573495 . + . gene_id "Y_RNA^ENSG00000276723.1"; transcript_id "ENST00000614432.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.803-201"; exon_number 1; exon_id "ENSE00003716340.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000276723.1"; orig_coord_info "chr9,65573384,65573495,+"; Error, chr discrepancy in gtf info for chr9 ENSEMBL exon 67697076 67697187 . + . gene_id "Y_RNA^ENSG00000275904.1"; transcript_id "ENST00000619475.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.795-201"; exon_number 1; exon_id "ENSE00003750905.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000275904.1"; orig_coord_info "chr9,67697076,67697187,+"; Error, chr discrepancy in gtf info for chr9 ENSEMBL exon 70311607 70311701 . - . gene_id "Y_RNA^ENSG00000239180.1"; transcript_id "ENST00000459091.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.653-201"; exon_number 1; exon_id "ENSE00001807846.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000239180.1"; orig_coord_info "chr9,70311607,70311701,-"; Error, chr discrepancy in gtf info for chr9 ENSEMBL exon 71902455 71902550 . - . gene_id "Y_RNA^ENSG00000200922.1"; transcript_id "ENST00000364052.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.201-201"; exon_number 1; exon_id "ENSE00001438815.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200922.1"; orig_coord_info "chr9,71902455,71902550,-"; Error, chr discrepancy in gtf info for chr9 ENSEMBL exon 75181520 75181621 . - . gene_id "Y_RNA^ENSG00000200041.1"; transcript_id "ENST00000363171.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.103-201"; exon_number 1; exon_id "ENSE00001807573.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200041.1"; orig_coord_info "chr9,75181520,75181621,-"; Error, chr discrepancy in gtf info for chr9 ENSEMBL exon 83992932 83993033 . + . gene_id "Y_RNA^ENSG00000202523.1"; transcript_id "ENST00000365653.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.379-201"; exon_number 1; exon_id "ENSE00001808386.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000202523.1"; orig_coord_info "chr9,83992932,83993033,+"; Error, chr discrepancy in gtf info for chr9 ENSEMBL exon 93417855 93417966 . + . gene_id "Y_RNA^ENSG00000201074.1"; transcript_id "ENST00000364204.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.215-201"; exon_number 1; exon_id "ENSE00001438967.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201074.1"; orig_coord_info "chr9,93417855,93417966,+"; Error, chr discrepancy in gtf info for chr9 ENSEMBL exon 96103079 96103174 . - . gene_id "Y_RNA^ENSG00000201938.1"; transcript_id "ENST00000365068.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.311-201"; exon_number 1; exon_id "ENSE00001439831.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201938.1"; orig_coord_info "chr9,96103079,96103174,-"; Error, chr discrepancy in gtf info for chr9 ENSEMBL exon 97915690 97915796 . + . gene_id "Y_RNA^ENSG00000201830.1"; transcript_id "ENST00000364960.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.298-201"; exon_number 1; exon_id "ENSE00001809144.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201830.1"; orig_coord_info "chr9,97915690,97915796,+"; Error, chr discrepancy in gtf info for chr9 ENSEMBL exon 109042386 109042487 . - . gene_id "Y_RNA^ENSG00000199331.1"; transcript_id "ENST00000362461.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.18-201"; exon_number 1; exon_id "ENSE00001807851.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199331.1"; orig_coord_info "chr9,109042386,109042487,-"; Error, chr discrepancy in gtf info for chr9 ENSEMBL exon 109324685 109324796 . + . gene_id "Y_RNA^ENSG00000207329.1"; transcript_id "ENST00000384599.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.534-201"; exon_number 1; exon_id "ENSE00001499607.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207329.1"; orig_coord_info "chr9,109324685,109324796,+"; Error, chr discrepancy in gtf info for chr9 ENSEMBL exon 110934406 110934507 . + . gene_id "Y_RNA^ENSG00000207401.1"; transcript_id "ENST00000384670.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.553-201"; exon_number 1; exon_id "ENSE00001808248.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207401.1"; orig_coord_info "chr9,110934406,110934507,+"; Error, chr discrepancy in gtf info for chr9 ENSEMBL exon 112169286 112169397 . + . gene_id "Y_RNA^ENSG00000200261.1"; transcript_id "ENST00000363391.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.128-201"; exon_number 1; exon_id "ENSE00001808247.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200261.1"; orig_coord_info "chr9,112169286,112169397,+"; Error, chr discrepancy in gtf info for chr9 ENSEMBL exon 114615455 114615568 . - . gene_id "Y_RNA^ENSG00000201749.1"; transcript_id "ENST00000364879.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.290-201"; exon_number 1; exon_id "ENSE00001809228.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201749.1"; orig_coord_info "chr9,114615455,114615568,-"; Error, chr discrepancy in gtf info for chr9 ENSEMBL exon 127470875 127470987 . + . gene_id "Y_RNA^ENSG00000200788.1"; transcript_id "ENST00000363918.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.187-201"; exon_number 1; exon_id "ENSE00001807300.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200788.1"; orig_coord_info "chr9,127470875,127470987,+"; Error, chr discrepancy in gtf info for chr9 ENSEMBL exon 127832635 127832743 . - . gene_id "Y_RNA^ENSG00000222421.1"; transcript_id "ENST00000410489.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.599-201"; exon_number 1; exon_id "ENSE00001590307.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000222421.1"; orig_coord_info "chr9,127832635,127832743,-"; Error, chr discrepancy in gtf info for chr9 ENSEMBL exon 130120806 130120912 . + . gene_id "Y_RNA^ENSG00000223188.1"; transcript_id "ENST00000411256.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.625-201"; exon_number 1; exon_id "ENSE00001591074.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000223188.1"; orig_coord_info "chr9,130120806,130120912,+"; Error, chr discrepancy in gtf info for chr9 ENSEMBL exon 133302470 133302563 . + . gene_id "Y_RNA^ENSG00000201843.1"; transcript_id "ENST00000364973.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.299-201"; exon_number 1; exon_id "ENSE00001439736.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201843.1"; orig_coord_info "chr9,133302470,133302563,+"; Error, chr discrepancy in gtf info for chr9 ENSEMBL exon 133337728 133337824 . - . gene_id "Y_RNA^ENSG00000201451.1"; transcript_id "ENST00000364581.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.255-201"; exon_number 1; exon_id "ENSE00001439344.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201451.1"; orig_coord_info "chr9,133337728,133337824,-"; Error, chr discrepancy in gtf info for chr10 ENSEMBL exon 6245731 6245831 . - . gene_id "Y_RNA^ENSG00000238366.1"; transcript_id "ENST00000459607.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.631-201"; exon_number 1; exon_id "ENSE00001807057.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000238366.1"; orig_coord_info "chr10,6245731,6245831,-"; Error, chr discrepancy in gtf info for chr10 ENSEMBL exon 10232611 10232712 . + . gene_id "Y_RNA^ENSG00000200849.1"; transcript_id "ENST00000363979.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.193-201"; exon_number 1; exon_id "ENSE00001807381.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200849.1"; orig_coord_info "chr10,10232611,10232712,+"; Error, chr discrepancy in gtf info for chr10 ENSEMBL exon 13511206 13511313 . - . gene_id "Y_RNA^ENSG00000202508.1"; transcript_id "ENST00000365638.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.376-201"; exon_number 1; exon_id "ENSE00001440401.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000202508.1"; orig_coord_info "chr10,13511206,13511313,-"; Error, chr discrepancy in gtf info for chr10 ENSEMBL exon 17403508 17403620 . + . gene_id "Y_RNA^ENSG00000251803.1"; transcript_id "ENST00000515994.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.659-201"; exon_number 1; exon_id "ENSE00002088271.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000251803.1"; orig_coord_info "chr10,17403508,17403620,+"; Error, chr discrepancy in gtf info for chr10 ENSEMBL exon 21481716 21481817 . + . gene_id "Y_RNA^ENSG00000199222.1"; transcript_id "ENST00000362352.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.7-201"; exon_number 1; exon_id "ENSE00001808153.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199222.1"; orig_coord_info "chr10,21481716,21481817,+"; Error, chr discrepancy in gtf info for chr10 ENSEMBL exon 31756042 31756136 . - . gene_id "Y_RNA^ENSG00000222412.1"; transcript_id "ENST00000410480.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.598-201"; exon_number 1; exon_id "ENSE00001590298.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000222412.1"; orig_coord_info "chr10,31756042,31756136,-"; Error, chr discrepancy in gtf info for chr10 ENSEMBL exon 32056746 32056839 . + . gene_id "Y_RNA^ENSG00000206660.1"; transcript_id "ENST00000383933.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.391-201"; exon_number 1; exon_id "ENSE00001808133.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206660.1"; orig_coord_info "chr10,32056746,32056839,+"; Error, chr discrepancy in gtf info for chr10 ENSEMBL exon 34201979 34202074 . - . gene_id "Y_RNA^ENSG00000199200.2"; transcript_id "ENST00000362330.2"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.2-201"; exon_number 1; exon_id "ENSE00001437093.2"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199200.2"; orig_coord_info "chr10,34201979,34202074,-"; Error, chr discrepancy in gtf info for chr10 ENSEMBL exon 36626015 36626138 . - . gene_id "Y_RNA^ENSG00000207271.1"; transcript_id "ENST00000384541.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.516-201"; exon_number 1; exon_id "ENSE00001499549.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207271.1"; orig_coord_info "chr10,36626015,36626138,-"; Error, chr discrepancy in gtf info for chr10 ENSEMBL exon 37303000 37303109 . - . gene_id "Y_RNA^ENSG00000252621.1"; transcript_id "ENST00000516812.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.701-201"; exon_number 1; exon_id "ENSE00002089089.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000252621.1"; orig_coord_info "chr10,37303000,37303109,-"; Error, chr discrepancy in gtf info for chr10 ENSEMBL exon 37994863 37994975 . + . gene_id "Y_RNA^ENSG00000206840.1"; transcript_id "ENST00000384113.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.437-201"; exon_number 1; exon_id "ENSE00001807098.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206840.1"; orig_coord_info "chr10,37994863,37994975,+"; Error, chr discrepancy in gtf info for chr10 ENSEMBL exon 52852607 52852703 . + . gene_id "Y_RNA^ENSG00000201196.1"; transcript_id "ENST00000364326.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.225-201"; exon_number 1; exon_id "ENSE00001807409.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201196.1"; orig_coord_info "chr10,52852607,52852703,+"; Error, chr discrepancy in gtf info for chr10 ENSEMBL exon 60081741 60081854 . + . gene_id "Y_RNA^ENSG00000202190.1"; transcript_id "ENST00000365320.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.338-201"; exon_number 1; exon_id "ENSE00001440083.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000202190.1"; orig_coord_info "chr10,60081741,60081854,+"; Error, chr discrepancy in gtf info for chr10 ENSEMBL exon 68503152 68503259 . + . gene_id "Y_RNA^ENSG00000207438.1"; transcript_id "ENST00000384707.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.563-201"; exon_number 1; exon_id "ENSE00001499715.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207438.1"; orig_coord_info "chr10,68503152,68503259,+"; Error, chr discrepancy in gtf info for chr10 ENSEMBL exon 68735720 68735823 . - . gene_id "Y_RNA^ENSG00000195401.2"; transcript_id "ENST00000352915.2"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.1-201"; exon_number 1; exon_id "ENSE00001392276.2"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000195401.2"; orig_coord_info "chr10,68735720,68735823,-"; Error, chr discrepancy in gtf info for chr10 ENSEMBL exon 72220752 72220852 . + . gene_id "Y_RNA^ENSG00000200170.1"; transcript_id "ENST00000363300.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.118-201"; exon_number 1; exon_id "ENSE00001808265.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200170.1"; orig_coord_info "chr10,72220752,72220852,+"; Error, chr discrepancy in gtf info for chr10 ENSEMBL exon 72654165 72654276 . - . gene_id "Y_RNA^ENSG00000201881.1"; transcript_id "ENST00000365011.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.304-201"; exon_number 1; exon_id "ENSE00001439774.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201881.1"; orig_coord_info "chr10,72654165,72654276,-"; Error, chr discrepancy in gtf info for chr10 ENSEMBL exon 73082494 73082595 . - . gene_id "Y_RNA^ENSG00000201047.1"; transcript_id "ENST00000364177.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.212-201"; exon_number 1; exon_id "ENSE00001808024.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201047.1"; orig_coord_info "chr10,73082494,73082595,-"; Error, chr discrepancy in gtf info for chr10 ENSEMBL exon 73192223 73192325 . - . gene_id "Y_RNA^ENSG00000199201.1"; transcript_id "ENST00000362331.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.3-201"; exon_number 1; exon_id "ENSE00001809247.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199201.1"; orig_coord_info "chr10,73192223,73192325,-"; Error, chr discrepancy in gtf info for chr10 ENSEMBL exon 73346936 73347048 . + . gene_id "Y_RNA^ENSG00000207473.1"; transcript_id "ENST00000384742.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.568-201"; exon_number 1; exon_id "ENSE00001499750.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207473.1"; orig_coord_info "chr10,73346936,73347048,+"; Error, chr discrepancy in gtf info for chr10 ENSEMBL exon 74551392 74551493 . + . gene_id "Y_RNA^ENSG00000206756.1"; transcript_id "ENST00000384029.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.418-201"; exon_number 1; exon_id "ENSE00001807089.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206756.1"; orig_coord_info "chr10,74551392,74551493,+"; Error, chr discrepancy in gtf info for chr10 ENSEMBL exon 88585638 88585733 . - . gene_id "Y_RNA^ENSG00000201548.1"; transcript_id "ENST00000364678.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.266-201"; exon_number 1; exon_id "ENSE00001808709.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201548.1"; orig_coord_info "chr10,88585638,88585733,-"; Error, chr discrepancy in gtf info for chr10 ENSEMBL exon 90880040 90880179 . - . gene_id "Y_RNA^ENSG00000222305.1"; transcript_id "ENST00000410373.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.594-201"; exon_number 1; exon_id "ENSE00001590191.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000222305.1"; orig_coord_info "chr10,90880040,90880179,-"; Error, chr discrepancy in gtf info for chr10 ENSEMBL exon 92272147 92272250 . - . gene_id "Y_RNA^ENSG00000199881.1"; transcript_id "ENST00000363011.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.84-201"; exon_number 1; exon_id "ENSE00001437774.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199881.1"; orig_coord_info "chr10,92272147,92272250,-"; Error, chr discrepancy in gtf info for chr10 ENSEMBL exon 92710499 92710608 . - . gene_id "Y_RNA^ENSG00000201412.1"; transcript_id "ENST00000364542.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.250-201"; exon_number 1; exon_id "ENSE00001439305.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201412.1"; orig_coord_info "chr10,92710499,92710608,-"; Error, chr discrepancy in gtf info for chr10 ENSEMBL exon 97421195 97421307 . - . gene_id "Y_RNA^ENSG00000200737.1"; transcript_id "ENST00000363867.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.180-201"; exon_number 1; exon_id "ENSE00001806924.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200737.1"; orig_coord_info "chr10,97421195,97421307,-"; Error, chr discrepancy in gtf info for chr10 ENSEMBL exon 100398352 100398446 . - . gene_id "Y_RNA^ENSG00000212325.1"; transcript_id "ENST00000391023.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.582-201"; exon_number 1; exon_id "ENSE00001808190.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000212325.1"; orig_coord_info "chr10,100398352,100398446,-"; Error, chr discrepancy in gtf info for chr10 ENSEMBL exon 100907174 100907280 . - . gene_id "Y_RNA^ENSG00000222072.1"; transcript_id "ENST00000410140.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.590-201"; exon_number 1; exon_id "ENSE00001589958.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000222072.1"; orig_coord_info "chr10,100907174,100907280,-"; Error, chr discrepancy in gtf info for chr10 ENSEMBL exon 101952605 101952704 . - . gene_id "Y_RNA^ENSG00000222430.1"; transcript_id "ENST00000410498.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.600-201"; exon_number 1; exon_id "ENSE00001590316.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000222430.1"; orig_coord_info "chr10,101952605,101952704,-"; Error, chr discrepancy in gtf info for chr10 ENSEMBL exon 103673158 103673265 . + . gene_id "Y_RNA^ENSG00000222503.1"; transcript_id "ENST00000410571.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.603-201"; exon_number 1; exon_id "ENSE00001590389.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000222503.1"; orig_coord_info "chr10,103673158,103673265,+"; Error, chr discrepancy in gtf info for chr10 ENSEMBL exon 110642678 110642785 . - . gene_id "Y_RNA^ENSG00000223302.1"; transcript_id "ENST00000411370.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.630-201"; exon_number 1; exon_id "ENSE00001591188.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000223302.1"; orig_coord_info "chr10,110642678,110642785,-"; Error, chr discrepancy in gtf info for chr10 ENSEMBL exon 121846600 121846700 . + . gene_id "Y_RNA^ENSG00000201884.1"; transcript_id "ENST00000365014.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.305-201"; exon_number 1; exon_id "ENSE00001439777.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201884.1"; orig_coord_info "chr10,121846600,121846700,+"; Error, chr discrepancy in gtf info for chr10 ENSEMBL exon 124766196 124766297 . + . gene_id "Y_RNA^ENSG00000199466.1"; transcript_id "ENST00000362596.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.34-201"; exon_number 1; exon_id "ENSE00001807144.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199466.1"; orig_coord_info "chr10,124766196,124766297,+"; Error, chr discrepancy in gtf info for chr10 ENSEMBL exon 124814958 124815062 . - . gene_id "Y_RNA^ENSG00000207494.1"; transcript_id "ENST00000384763.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.573-201"; exon_number 1; exon_id "ENSE00001499771.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207494.1"; orig_coord_info "chr10,124814958,124815062,-"; Error, chr discrepancy in gtf info for chr10 ENSEMBL exon 130505106 130505201 . + . gene_id "Y_RNA^ENSG00000222997.1"; transcript_id "ENST00000411065.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.621-201"; exon_number 1; exon_id "ENSE00001590883.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000222997.1"; orig_coord_info "chr10,130505106,130505201,+"; Error, chr discrepancy in gtf info for chr11 ENSEMBL exon 2372638 2372750 . + . gene_id "Y_RNA^ENSG00000199550.1"; transcript_id "ENST00000362680.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.45-201"; exon_number 1; exon_id "ENSE00001808225.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199550.1"; orig_coord_info "chr11,2372638,2372750,+"; Error, chr discrepancy in gtf info for chr11 ENSEMBL exon 3663815 3663911 . - . gene_id "Y_RNA^ENSG00000201279.1"; transcript_id "ENST00000364409.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.234-201"; exon_number 1; exon_id "ENSE00001439172.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201279.1"; orig_coord_info "chr11,3663815,3663911,-"; Error, chr discrepancy in gtf info for chr11 ENSEMBL exon 3665164 3665259 . - . gene_id "Y_RNA^ENSG00000200201.1"; transcript_id "ENST00000363331.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.122-201"; exon_number 1; exon_id "ENSE00001438094.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200201.1"; orig_coord_info "chr11,3665164,3665259,-"; Error, chr discrepancy in gtf info for chr11 ENSEMBL exon 8877417 8877518 . - . gene_id "Y_RNA^ENSG00000202276.1"; transcript_id "ENST00000365406.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.349-201"; exon_number 1; exon_id "ENSE00001807339.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000202276.1"; orig_coord_info "chr11,8877417,8877518,-"; Error, chr discrepancy in gtf info for chr11 ENSEMBL exon 8943380 8943467 . - . gene_id "Y_RNA^ENSG00000223080.1"; transcript_id "ENST00000411148.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.624-201"; exon_number 1; exon_id "ENSE00001590966.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000223080.1"; orig_coord_info "chr11,8943380,8943467,-"; Error, chr discrepancy in gtf info for chr11 ENSEMBL exon 10725903 10726004 . + . gene_id "Y_RNA^ENSG00000206858.1"; transcript_id "ENST00000384131.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.442-201"; exon_number 1; exon_id "ENSE00001807817.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206858.1"; orig_coord_info "chr11,10725903,10726004,+"; Error, chr discrepancy in gtf info for chr11 ENSEMBL exon 13686550 13686658 . - . gene_id "Y_RNA^ENSG00000200685.1"; transcript_id "ENST00000363815.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.176-201"; exon_number 1; exon_id "ENSE00001438578.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200685.1"; orig_coord_info "chr11,13686550,13686658,-"; Error, chr discrepancy in gtf info for chr11 ENSEMBL exon 24455911 24456010 . + . gene_id "Y_RNA^ENSG00000207252.1"; transcript_id "ENST00000384522.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.513-201"; exon_number 1; exon_id "ENSE00001808113.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207252.1"; orig_coord_info "chr11,24455911,24456010,+"; Error, chr discrepancy in gtf info for chr11 ENSEMBL exon 33004250 33004345 . - . gene_id "Y_RNA^ENSG00000200615.1"; transcript_id "ENST00000363745.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.169-201"; exon_number 1; exon_id "ENSE00001808501.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200615.1"; orig_coord_info "chr11,33004250,33004345,-"; Error, chr discrepancy in gtf info for chr11 ENSEMBL exon 33171381 33171490 . - . gene_id "Y_RNA^ENSG00000206808.1"; transcript_id "ENST00000384081.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.430-201"; exon_number 1; exon_id "ENSE00001499091.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206808.1"; orig_coord_info "chr11,33171381,33171490,-"; Error, chr discrepancy in gtf info for chr11 ENSEMBL exon 33196547 33196637 . - . gene_id "Y_RNA^ENSG00000200485.1"; transcript_id "ENST00000363615.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.153-201"; exon_number 1; exon_id "ENSE00001438378.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200485.1"; orig_coord_info "chr11,33196547,33196637,-"; Error, chr discrepancy in gtf info for chr11 ENSEMBL exon 34189174 34189275 . + . gene_id "Y_RNA^ENSG00000201867.1"; transcript_id "ENST00000364997.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.302-201"; exon_number 1; exon_id "ENSE00001808346.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201867.1"; orig_coord_info "chr11,34189174,34189275,+"; Error, chr discrepancy in gtf info for chr11 ENSEMBL exon 40351564 40351672 . + . gene_id "Y_RNA^ENSG00000206806.1"; transcript_id "ENST00000384079.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.429-201"; exon_number 1; exon_id "ENSE00001808251.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206806.1"; orig_coord_info "chr11,40351564,40351672,+"; Error, chr discrepancy in gtf info for chr11 ENSEMBL exon 43331261 43331356 . + . gene_id "Y_RNA^ENSG00000252652.1"; transcript_id "ENST00000516843.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.702-201"; exon_number 1; exon_id "ENSE00002089120.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000252652.1"; orig_coord_info "chr11,43331261,43331356,+"; Error, chr discrepancy in gtf info for chr11 ENSEMBL exon 47726894 47726992 . - . gene_id "Y_RNA^ENSG00000200090.1"; transcript_id "ENST00000363220.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.110-201"; exon_number 1; exon_id "ENSE00001437983.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200090.1"; orig_coord_info "chr11,47726894,47726992,-"; Error, chr discrepancy in gtf info for chr11 ENSEMBL exon 47820200 47820289 . - . gene_id "Y_RNA^ENSG00000252874.2"; transcript_id "ENST00000517065.2"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.714-201"; exon_number 1; exon_id "ENSE00002089342.2"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000252874.2"; orig_coord_info "chr11,47820200,47820289,-"; Error, chr discrepancy in gtf info for chr11 ENSEMBL exon 64296037 64296138 . + . gene_id "Y_RNA^ENSG00000207024.1"; transcript_id "ENST00000384297.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.467-201"; exon_number 1; exon_id "ENSE00001807890.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207024.1"; orig_coord_info "chr11,64296037,64296138,+"; Error, chr discrepancy in gtf info for chr11 ENSEMBL exon 70705167 70705269 . - . gene_id "Y_RNA^ENSG00000207196.1"; transcript_id "ENST00000384467.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.501-201"; exon_number 1; exon_id "ENSE00001807263.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207196.1"; orig_coord_info "chr11,70705167,70705269,-"; Error, chr discrepancy in gtf info for chr11 ENSEMBL exon 72766004 72766116 . + . gene_id "Y_RNA^ENSG00000202522.1"; transcript_id "ENST00000365652.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.378-201"; exon_number 1; exon_id "ENSE00001807105.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000202522.1"; orig_coord_info "chr11,72766004,72766116,+"; Error, chr discrepancy in gtf info for chr11 ENSEMBL exon 75835215 75835323 . - . gene_id "Y_RNA^ENSG00000200256.1"; transcript_id "ENST00000363386.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.127-201"; exon_number 1; exon_id "ENSE00001438149.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200256.1"; orig_coord_info "chr11,75835215,75835323,-"; Error, chr discrepancy in gtf info for chr11 ENSEMBL exon 75837544 75837645 . - . gene_id "Y_RNA^ENSG00000199362.1"; transcript_id "ENST00000362492.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.22-201"; exon_number 1; exon_id "ENSE00001807192.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199362.1"; orig_coord_info "chr11,75837544,75837645,-"; Error, chr discrepancy in gtf info for chr11 ENSEMBL exon 76404140 76404252 . - . gene_id "Y_RNA^ENSG00000201756.1"; transcript_id "ENST00000364886.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.291-201"; exon_number 1; exon_id "ENSE00001807318.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201756.1"; orig_coord_info "chr11,76404140,76404252,-"; Error, chr discrepancy in gtf info for chr11 ENSEMBL exon 77691650 77691751 . + . gene_id "Y_RNA^ENSG00000206816.1"; transcript_id "ENST00000384089.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.433-201"; exon_number 1; exon_id "ENSE00001808478.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206816.1"; orig_coord_info "chr11,77691650,77691751,+"; Error, chr discrepancy in gtf info for chr11 ENSEMBL exon 88099995 88100105 . + . gene_id "Y_RNA^ENSG00000206690.1"; transcript_id "ENST00000383963.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.400-201"; exon_number 1; exon_id "ENSE00001498973.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206690.1"; orig_coord_info "chr11,88099995,88100105,+"; Error, chr discrepancy in gtf info for chr11 ENSEMBL exon 93719603 93719715 . + . gene_id "Y_RNA^ENSG00000199875.1"; transcript_id "ENST00000363005.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.83-201"; exon_number 1; exon_id "ENSE00001809065.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199875.1"; orig_coord_info "chr11,93719603,93719715,+"; Error, chr discrepancy in gtf info for chr11 ENSEMBL exon 93827622 93827734 . + . gene_id "Y_RNA^ENSG00000206911.1"; transcript_id "ENST00000384184.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.447-201"; exon_number 1; exon_id "ENSE00001808686.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206911.1"; orig_coord_info "chr11,93827622,93827734,+"; Error, chr discrepancy in gtf info for chr11 ENSEMBL exon 108084913 108085014 . + . gene_id "Y_RNA^ENSG00000200855.1"; transcript_id "ENST00000363985.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.194-201"; exon_number 1; exon_id "ENSE00001808793.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200855.1"; orig_coord_info "chr11,108084913,108085014,+"; Error, chr discrepancy in gtf info for chr11 ENSEMBL exon 108229503 108229604 . - . gene_id "Y_RNA^ENSG00000206967.1"; transcript_id "ENST00000384240.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.458-201"; exon_number 1; exon_id "ENSE00001808986.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206967.1"; orig_coord_info "chr11,108229503,108229604,-"; Error, chr discrepancy in gtf info for chr11 ENSEMBL exon 118836010 118836111 . + . gene_id "Y_RNA^ENSG00000201535.2"; transcript_id "ENST00000364665.2"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.264-201"; exon_number 1; exon_id "ENSE00001439428.2"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201535.2"; orig_coord_info "chr11,118836010,118836111,+"; Error, chr discrepancy in gtf info for chr11 ENSEMBL exon 118970498 118970595 . + . gene_id "Y_RNA^ENSG00000222529.1"; transcript_id "ENST00000410597.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.607-201"; exon_number 1; exon_id "ENSE00001590415.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000222529.1"; orig_coord_info "chr11,118970498,118970595,+"; Error, chr discrepancy in gtf info for chr11 ENSEMBL exon 118994560 118994655 . + . gene_id "Y_RNA^ENSG00000283691.1"; transcript_id "ENST00000628531.2"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.830-201"; exon_number 1; exon_id "ENSE00003774014.2"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000283691.1"; orig_coord_info "chr11,118994560,118994655,+"; Error, chr discrepancy in gtf info for chr11 ENSEMBL exon 129030459 129030572 . + . gene_id "Y_RNA^ENSG00000206847.1"; transcript_id "ENST00000384120.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.440-201"; exon_number 1; exon_id "ENSE00001499130.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206847.1"; orig_coord_info "chr11,129030459,129030572,+"; Error, chr discrepancy in gtf info for chr12 ENSEMBL exon 6234345 6234455 . - . gene_id "Y_RNA^ENSG00000202318.1"; transcript_id "ENST00000365448.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.354-201"; exon_number 1; exon_id "ENSE00001440211.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000202318.1"; orig_coord_info "chr12,6234345,6234455,-"; Error, chr discrepancy in gtf info for chr12 ENSEMBL exon 7784403 7784511 . - . gene_id "Y_RNA^ENSG00000201549.1"; transcript_id "ENST00000364679.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.267-201"; exon_number 1; exon_id "ENSE00001439442.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201549.1"; orig_coord_info "chr12,7784403,7784511,-"; Error, chr discrepancy in gtf info for chr12 ENSEMBL exon 7800361 7800467 . - . gene_id "Y_RNA^ENSG00000199912.1"; transcript_id "ENST00000363042.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.91-201"; exon_number 1; exon_id "ENSE00001807004.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199912.1"; orig_coord_info "chr12,7800361,7800467,-"; Error, chr discrepancy in gtf info for chr12 ENSEMBL exon 7850717 7850818 . - . gene_id "Y_RNA^ENSG00000201663.1"; transcript_id "ENST00000364793.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.282-201"; exon_number 1; exon_id "ENSE00001807569.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201663.1"; orig_coord_info "chr12,7850717,7850818,-"; Error, chr discrepancy in gtf info for chr12 ENSEMBL exon 7976259 7976360 . + . gene_id "Y_RNA^ENSG00000206636.1"; transcript_id "ENST00000383909.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.384-201"; exon_number 1; exon_id "ENSE00001807239.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206636.1"; orig_coord_info "chr12,7976259,7976360,+"; Error, chr discrepancy in gtf info for chr12 ENSEMBL exon 8592476 8592585 . + . gene_id "Y_RNA^ENSG00000238943.1"; transcript_id "ENST00000459455.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.648-201"; exon_number 1; exon_id "ENSE00001807523.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000238943.1"; orig_coord_info "chr12,8592476,8592585,+"; Error, chr discrepancy in gtf info for chr12 ENSEMBL exon 17710934 17711046 . + . gene_id "Y_RNA^ENSG00000206662.1"; transcript_id "ENST00000383935.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.392-201"; exon_number 1; exon_id "ENSE00001807362.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206662.1"; orig_coord_info "chr12,17710934,17711046,+"; Error, chr discrepancy in gtf info for chr12 ENSEMBL exon 27752874 27752986 . + . gene_id "Y_RNA^ENSG00000252585.1"; transcript_id "ENST00000516776.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.697-201"; exon_number 1; exon_id "ENSE00002089053.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000252585.1"; orig_coord_info "chr12,27752874,27752986,+"; Error, chr discrepancy in gtf info for chr12 ENSEMBL exon 31506303 31506404 . - . gene_id "Y_RNA^ENSG00000201228.1"; transcript_id "ENST00000364358.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.231-201"; exon_number 1; exon_id "ENSE00001808140.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201228.1"; orig_coord_info "chr12,31506303,31506404,-"; Error, chr discrepancy in gtf info for chr12 ENSEMBL exon 32396050 32396147 . - . gene_id "Y_RNA^ENSG00000207176.1"; transcript_id "ENST00000384447.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.497-201"; exon_number 1; exon_id "ENSE00001499455.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207176.1"; orig_coord_info "chr12,32396050,32396147,-"; Error, chr discrepancy in gtf info for chr12 ENSEMBL exon 32705403 32705506 . - . gene_id "Y_RNA^ENSG00000201563.1"; transcript_id "ENST00000364693.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.270-201"; exon_number 1; exon_id "ENSE00001439456.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201563.1"; orig_coord_info "chr12,32705403,32705506,-"; Error, chr discrepancy in gtf info for chr12 ENSEMBL exon 33982465 33982566 . - . gene_id "Y_RNA^ENSG00000201624.1"; transcript_id "ENST00000364754.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.277-201"; exon_number 1; exon_id "ENSE00001808421.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201624.1"; orig_coord_info "chr12,33982465,33982566,-"; Error, chr discrepancy in gtf info for chr12 ENSEMBL exon 38274448 38274549 . - . gene_id "Y_RNA^ENSG00000253016.1"; transcript_id "ENST00000517207.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.721-201"; exon_number 1; exon_id "ENSE00002089484.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000253016.1"; orig_coord_info "chr12,38274448,38274549,-"; Error, chr discrepancy in gtf info for chr12 ENSEMBL exon 42454720 42454821 . + . gene_id "Y_RNA^ENSG00000207142.1"; transcript_id "ENST00000384413.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.490-201"; exon_number 1; exon_id "ENSE00001807940.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207142.1"; orig_coord_info "chr12,42454720,42454821,+"; Error, chr discrepancy in gtf info for chr12 ENSEMBL exon 44880868 44880969 . - . gene_id "Y_RNA^ENSG00000201788.1"; transcript_id "ENST00000364918.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.295-201"; exon_number 1; exon_id "ENSE00001807743.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201788.1"; orig_coord_info "chr12,44880868,44880969,-"; Error, chr discrepancy in gtf info for chr12 ENSEMBL exon 48809911 48810016 . + . gene_id "Y_RNA^ENSG00000207467.1"; transcript_id "ENST00000384736.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.567-201"; exon_number 1; exon_id "ENSE00001499744.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207467.1"; orig_coord_info "chr12,48809911,48810016,+"; Error, chr discrepancy in gtf info for chr12 ENSEMBL exon 49132853 49132947 . - . gene_id "Y_RNA^ENSG00000200309.1"; transcript_id "ENST00000363439.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.135-201"; exon_number 1; exon_id "ENSE00001438202.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200309.1"; orig_coord_info "chr12,49132853,49132947,-"; Error, chr discrepancy in gtf info for chr12 ENSEMBL exon 50743568 50743684 . + . gene_id "Y_RNA^ENSG00000200428.1"; transcript_id "ENST00000363558.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.149-201"; exon_number 1; exon_id "ENSE00001438321.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200428.1"; orig_coord_info "chr12,50743568,50743684,+"; Error, chr discrepancy in gtf info for chr12 ENSEMBL exon 50939927 50940026 . - . gene_id "Y_RNA^ENSG00000199740.1"; transcript_id "ENST00000362870.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.67-201"; exon_number 1; exon_id "ENSE00001807780.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199740.1"; orig_coord_info "chr12,50939927,50940026,-"; Error, chr discrepancy in gtf info for chr12 ENSEMBL exon 51156868 51156977 . - . gene_id "Y_RNA^ENSG00000200953.1"; transcript_id "ENST00000364083.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.202-201"; exon_number 1; exon_id "ENSE00001808722.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200953.1"; orig_coord_info "chr12,51156868,51156977,-"; Error, chr discrepancy in gtf info for chr12 ENSEMBL exon 54099191 54099302 . - . gene_id "Y_RNA^ENSG00000202146.1"; transcript_id "ENST00000365276.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.334-201"; exon_number 1; exon_id "ENSE00001807978.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000202146.1"; orig_coord_info "chr12,54099191,54099302,-"; Error, chr discrepancy in gtf info for chr12 ENSEMBL exon 60341824 60341941 . - . gene_id "Y_RNA^ENSG00000252607.1"; transcript_id "ENST00000516798.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.698-201"; exon_number 1; exon_id "ENSE00002089075.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000252607.1"; orig_coord_info "chr12,60341824,60341941,-"; Error, chr discrepancy in gtf info for chr12 ENSEMBL exon 62935701 62935802 . + . gene_id "Y_RNA^ENSG00000252660.1"; transcript_id "ENST00000516851.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.704-201"; exon_number 1; exon_id "ENSE00002089128.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000252660.1"; orig_coord_info "chr12,62935701,62935802,+"; Error, chr discrepancy in gtf info for chr12 ENSEMBL exon 70906917 70907018 . + . gene_id "Y_RNA^ENSG00000207387.1"; transcript_id "ENST00000384657.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.549-201"; exon_number 1; exon_id "ENSE00001807390.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207387.1"; orig_coord_info "chr12,70906917,70907018,+"; Error, chr discrepancy in gtf info for chr12 ENSEMBL exon 88430442 88430550 . + . gene_id "Y_RNA^ENSG00000199245.1"; transcript_id "ENST00000362375.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.11-201"; exon_number 1; exon_id "ENSE00001437138.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199245.1"; orig_coord_info "chr12,88430442,88430550,+"; Error, chr discrepancy in gtf info for chr12 ENSEMBL exon 92170353 92170453 . - . gene_id "Y_RNA^ENSG00000199895.1"; transcript_id "ENST00000363025.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.87-201"; exon_number 1; exon_id "ENSE00001437788.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199895.1"; orig_coord_info "chr12,92170353,92170453,-"; Error, chr discrepancy in gtf info for chr12 ENSEMBL exon 93021606 93021712 . + . gene_id "Y_RNA^ENSG00000207365.1"; transcript_id "ENST00000384635.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.539-201"; exon_number 1; exon_id "ENSE00001499643.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207365.1"; orig_coord_info "chr12,93021606,93021712,+"; Error, chr discrepancy in gtf info for chr12 ENSEMBL exon 93460725 93460826 . - . gene_id "Y_RNA^ENSG00000200011.1"; transcript_id "ENST00000363141.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.100-201"; exon_number 1; exon_id "ENSE00001808432.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200011.1"; orig_coord_info "chr12,93460725,93460826,-"; Error, chr discrepancy in gtf info for chr12 ENSEMBL exon 95275770 95275872 . + . gene_id "Y_RNA^ENSG00000202470.1"; transcript_id "ENST00000365600.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.373-201"; exon_number 1; exon_id "ENSE00001808769.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000202470.1"; orig_coord_info "chr12,95275770,95275872,+"; Error, chr discrepancy in gtf info for chr12 ENSEMBL exon 95617689 95617786 . + . gene_id "Y_RNA^ENSG00000212448.1"; transcript_id "ENST00000391146.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.586-201"; exon_number 1; exon_id "ENSE00001508930.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000212448.1"; orig_coord_info "chr12,95617689,95617786,+"; Error, chr discrepancy in gtf info for chr12 ENSEMBL exon 96979528 96979629 . - . gene_id "Y_RNA^ENSG00000202368.1"; transcript_id "ENST00000365498.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.359-201"; exon_number 1; exon_id "ENSE00001808526.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000202368.1"; orig_coord_info "chr12,96979528,96979629,-"; Error, chr discrepancy in gtf info for chr12 ENSEMBL exon 100257688 100257790 . - . gene_id "Y_RNA^ENSG00000206790.1"; transcript_id "ENST00000384063.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.424-201"; exon_number 1; exon_id "ENSE00001808156.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206790.1"; orig_coord_info "chr12,100257688,100257790,-"; Error, chr discrepancy in gtf info for chr12 ENSEMBL exon 101446825 101446932 . + . gene_id "Y_RNA^ENSG00000206929.1"; transcript_id "ENST00000384202.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.452-201"; exon_number 1; exon_id "ENSE00001807185.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206929.1"; orig_coord_info "chr12,101446825,101446932,+"; Error, chr discrepancy in gtf info for chr12 ENSEMBL exon 104851824 104851918 . + . gene_id "Y_RNA^ENSG00000222579.1"; transcript_id "ENST00000410647.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.608-201"; exon_number 1; exon_id "ENSE00001590465.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000222579.1"; orig_coord_info "chr12,104851824,104851918,+"; Error, chr discrepancy in gtf info for chr12 ENSEMBL exon 107650789 107650892 . + . gene_id "Y_RNA^ENSG00000222160.1"; transcript_id "ENST00000410228.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.591-201"; exon_number 1; exon_id "ENSE00001590046.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000222160.1"; orig_coord_info "chr12,107650789,107650892,+"; Error, chr discrepancy in gtf info for chr12 ENSEMBL exon 108738484 108738604 . + . gene_id "Y_RNA^ENSG00000200060.1"; transcript_id "ENST00000363190.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.107-201"; exon_number 1; exon_id "ENSE00001437953.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200060.1"; orig_coord_info "chr12,108738484,108738604,+"; Error, chr discrepancy in gtf info for chr12 ENSEMBL exon 112069104 112069209 . + . gene_id "Y_RNA^ENSG00000200688.1"; transcript_id "ENST00000363818.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.177-201"; exon_number 1; exon_id "ENSE00001438581.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200688.1"; orig_coord_info "chr12,112069104,112069209,+"; Error, chr discrepancy in gtf info for chr12 ENSEMBL exon 112149360 112149472 . + . gene_id "Y_RNA^ENSG00000200135.1"; transcript_id "ENST00000363265.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.114-201"; exon_number 1; exon_id "ENSE00001807122.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200135.1"; orig_coord_info "chr12,112149360,112149472,+"; Error, chr discrepancy in gtf info for chr12 ENSEMBL exon 113156763 113156861 . - . gene_id "Y_RNA^ENSG00000199899.2"; transcript_id "ENST00000363029.2"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.88-201"; exon_number 1; exon_id "ENSE00001437792.2"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199899.2"; orig_coord_info "chr12,113156763,113156861,-"; Error, chr discrepancy in gtf info for chr12 ENSEMBL exon 113178423 113178519 . - . gene_id "Y_RNA^ENSG00000201208.1"; transcript_id "ENST00000364338.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.227-201"; exon_number 1; exon_id "ENSE00001439101.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201208.1"; orig_coord_info "chr12,113178423,113178519,-"; Error, chr discrepancy in gtf info for chr12 ENSEMBL exon 114657949 114658062 . - . gene_id "Y_RNA^ENSG00000199220.1"; transcript_id "ENST00000362350.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.6-201"; exon_number 1; exon_id "ENSE00001437113.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199220.1"; orig_coord_info "chr12,114657949,114658062,-"; Error, chr discrepancy in gtf info for chr12 ENSEMBL exon 120504571 120504659 . - . gene_id "Y_RNA^ENSG00000222601.1"; transcript_id "ENST00000410669.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.609-201"; exon_number 1; exon_id "ENSE00001590487.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000222601.1"; orig_coord_info "chr12,120504571,120504659,-"; Error, chr discrepancy in gtf info for chr12 ENSEMBL exon 122768099 122768200 . + . gene_id "Y_RNA^ENSG00000206914.1"; transcript_id "ENST00000384187.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.449-201"; exon_number 1; exon_id "ENSE00001808415.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206914.1"; orig_coord_info "chr12,122768099,122768200,+"; Error, chr discrepancy in gtf info for chr12 ENSEMBL exon 123348999 123349100 . - . gene_id "Y_RNA^ENSG00000207189.1"; transcript_id "ENST00000384460.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.498-201"; exon_number 1; exon_id "ENSE00001808209.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207189.1"; orig_coord_info "chr12,123348999,123349100,-"; Error, chr discrepancy in gtf info for chr12 ENSEMBL exon 127619336 127619447 . - . gene_id "Y_RNA^ENSG00000199584.1"; transcript_id "ENST00000362714.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.49-201"; exon_number 1; exon_id "ENSE00001808706.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199584.1"; orig_coord_info "chr12,127619336,127619447,-"; Error, chr discrepancy in gtf info for chr12 ENSEMBL exon 130906838 130906949 . + . gene_id "Y_RNA^ENSG00000206850.1"; transcript_id "ENST00000384123.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.441-201"; exon_number 1; exon_id "ENSE00001808315.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206850.1"; orig_coord_info "chr12,130906838,130906949,+"; Error, chr discrepancy in gtf info for chr12 ENSEMBL exon 133238455 133238549 . + . gene_id "Y_RNA^ENSG00000238443.1"; transcript_id "ENST00000459107.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.633-201"; exon_number 1; exon_id "ENSE00001808702.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000238443.1"; orig_coord_info "chr12,133238455,133238549,+"; Error, chr discrepancy in gtf info for chr13 ENSEMBL exon 28629794 28629883 . + . gene_id "Y_RNA^ENSG00000273964.1"; transcript_id "ENST00000620203.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.778-201"; exon_number 1; exon_id "ENSE00003715841.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000273964.1"; orig_coord_info "chr13,28629794,28629883,+"; Error, chr discrepancy in gtf info for chr14 ENSEMBL exon 20679411 20679512 . + . gene_id "Y_RNA^ENSG00000199461.1"; transcript_id "ENST00000362591.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.33-201"; exon_number 1; exon_id "ENSE00001807998.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199461.1"; orig_coord_info "chr14,20679411,20679512,+"; Error, chr discrepancy in gtf info for chr14 HAVANA exon 22852616 22852728 . - . gene_id "Y_RNA^ENSG00000212335.1"; transcript_id "ENST00000391033.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.583-201"; exon_number 1; exon_id "ENSE00001808687.1"; level 2; transcript_support_level "NA"; tag "CAGE_supported_TSS"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000212335.1"; orig_coord_info "chr14,22852616,22852728,-"; Error, chr discrepancy in gtf info for chr14 ENSEMBL exon 22867818 22867917 . + . gene_id "Y_RNA^ENSG00000199716.1"; transcript_id "ENST00000362846.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.65-201"; exon_number 1; exon_id "ENSE00001437609.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199716.1"; orig_coord_info "chr14,22867818,22867917,+"; Error, chr discrepancy in gtf info for chr14 ENSEMBL exon 28901236 28901347 . - . gene_id "Y_RNA^ENSG00000207164.1"; transcript_id "ENST00000384435.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.495-201"; exon_number 1; exon_id "ENSE00001808756.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207164.1"; orig_coord_info "chr14,28901236,28901347,-"; Error, chr discrepancy in gtf info for chr14 ENSEMBL exon 31244761 31244861 . + . gene_id "Y_RNA^ENSG00000202402.1"; transcript_id "ENST00000365532.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.364-201"; exon_number 1; exon_id "ENSE00001440295.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000202402.1"; orig_coord_info "chr14,31244761,31244861,+"; Error, chr discrepancy in gtf info for chr14 ENSEMBL exon 31258608 31258709 . - . gene_id "Y_RNA^ENSG00000199291.1"; transcript_id "ENST00000362421.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.16-201"; exon_number 1; exon_id "ENSE00001806987.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199291.1"; orig_coord_info "chr14,31258608,31258709,-"; Error, chr discrepancy in gtf info for chr14 ENSEMBL exon 38987281 38987383 . + . gene_id "Y_RNA^ENSG00000199285.1"; transcript_id "ENST00000362415.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.14-201"; exon_number 1; exon_id "ENSE00001437178.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199285.1"; orig_coord_info "chr14,38987281,38987383,+"; Error, chr discrepancy in gtf info for chr14 ENSEMBL exon 49592236 49592337 . - . gene_id "Y_RNA^ENSG00000252919.1"; transcript_id "ENST00000517110.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.718-201"; exon_number 1; exon_id "ENSE00002089387.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000252919.1"; orig_coord_info "chr14,49592236,49592337,-"; Error, chr discrepancy in gtf info for chr14 ENSEMBL exon 49839401 49839493 . - . gene_id "Y_RNA^ENSG00000277634.1"; transcript_id "ENST00000618281.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.811-201"; exon_number 1; exon_id "ENSE00003735073.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000277634.1"; orig_coord_info "chr14,49839401,49839493,-"; Error, chr discrepancy in gtf info for chr14 ENSEMBL exon 50086982 50087083 . + . gene_id "Y_RNA^ENSG00000251792.1"; transcript_id "ENST00000515983.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.657-201"; exon_number 1; exon_id "ENSE00002088260.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000251792.1"; orig_coord_info "chr14,50086982,50087083,+"; Error, chr discrepancy in gtf info for chr14 ENSEMBL exon 50468397 50468498 . - . gene_id "Y_RNA^ENSG00000201573.1"; transcript_id "ENST00000364703.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.273-201"; exon_number 1; exon_id "ENSE00001439466.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201573.1"; orig_coord_info "chr14,50468397,50468498,-"; Error, chr discrepancy in gtf info for chr14 ENSEMBL exon 51253933 51254023 . - . gene_id "Y_RNA^ENSG00000201820.1"; transcript_id "ENST00000364950.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.297-201"; exon_number 1; exon_id "ENSE00001439713.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201820.1"; orig_coord_info "chr14,51253933,51254023,-"; Error, chr discrepancy in gtf info for chr14 ENSEMBL exon 55651534 55651634 . + . gene_id "Y_RNA^ENSG00000200742.1"; transcript_id "ENST00000363872.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.181-201"; exon_number 1; exon_id "ENSE00001808749.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200742.1"; orig_coord_info "chr14,55651534,55651634,+"; Error, chr discrepancy in gtf info for chr14 ENSEMBL exon 58441844 58441992 . + . gene_id "Y_RNA^ENSG00000252198.1"; transcript_id "ENST00000516389.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.675-201"; exon_number 1; exon_id "ENSE00002088666.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000252198.1"; orig_coord_info "chr14,58441844,58441992,+"; Error, chr discrepancy in gtf info for chr14 ENSEMBL exon 63621760 63621871 . + . gene_id "Y_RNA^ENSG00000206822.1"; transcript_id "ENST00000384095.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.435-201"; exon_number 1; exon_id "ENSE00001809254.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206822.1"; orig_coord_info "chr14,63621760,63621871,+"; Error, chr discrepancy in gtf info for chr14 ENSEMBL exon 63848261 63848362 . - . gene_id "Y_RNA^ENSG00000202182.1"; transcript_id "ENST00000365312.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.337-201"; exon_number 1; exon_id "ENSE00001807832.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000202182.1"; orig_coord_info "chr14,63848261,63848362,-"; Error, chr discrepancy in gtf info for chr14 ENSEMBL exon 66177527 66177635 . - . gene_id "Y_RNA^ENSG00000200860.1"; transcript_id "ENST00000363990.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.196-201"; exon_number 1; exon_id "ENSE00001438753.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200860.1"; orig_coord_info "chr14,66177527,66177635,-"; Error, chr discrepancy in gtf info for chr14 ENSEMBL exon 67340068 67340176 . + . gene_id "Y_RNA^ENSG00000199755.1"; transcript_id "ENST00000362885.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.69-201"; exon_number 1; exon_id "ENSE00001437648.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199755.1"; orig_coord_info "chr14,67340068,67340176,+"; Error, chr discrepancy in gtf info for chr14 ENSEMBL exon 67617302 67617415 . - . gene_id "Y_RNA^ENSG00000201529.1"; transcript_id "ENST00000364659.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.263-201"; exon_number 1; exon_id "ENSE00001439422.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201529.1"; orig_coord_info "chr14,67617302,67617415,-"; Error, chr discrepancy in gtf info for chr14 ENSEMBL exon 69143852 69143953 . - . gene_id "Y_RNA^ENSG00000206768.1"; transcript_id "ENST00000384041.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.419-201"; exon_number 1; exon_id "ENSE00001807702.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206768.1"; orig_coord_info "chr14,69143852,69143953,-"; Error, chr discrepancy in gtf info for chr14 ENSEMBL exon 72022407 72022516 . - . gene_id "Y_RNA^ENSG00000200298.1"; transcript_id "ENST00000363428.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.133-201"; exon_number 1; exon_id "ENSE00001438191.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200298.1"; orig_coord_info "chr14,72022407,72022516,-"; Error, chr discrepancy in gtf info for chr14 ENSEMBL exon 72853224 72853331 . - . gene_id "Y_RNA^ENSG00000206751.1"; transcript_id "ENST00000384024.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.417-201"; exon_number 1; exon_id "ENSE00001808876.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206751.1"; orig_coord_info "chr14,72853224,72853331,-"; Error, chr discrepancy in gtf info for chr14 ENSEMBL exon 73858061 73858165 . - . gene_id "Y_RNA^ENSG00000223300.1"; transcript_id "ENST00000411368.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.629-201"; exon_number 1; exon_id "ENSE00001591186.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000223300.1"; orig_coord_info "chr14,73858061,73858165,-"; Error, chr discrepancy in gtf info for chr14 ENSEMBL exon 73906316 73906427 . - . gene_id "Y_RNA^ENSG00000199472.1"; transcript_id "ENST00000362602.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.36-201"; exon_number 1; exon_id "ENSE00001437365.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199472.1"; orig_coord_info "chr14,73906316,73906427,-"; Error, chr discrepancy in gtf info for chr14 ENSEMBL exon 77821030 77821142 . - . gene_id "Y_RNA^ENSG00000199440.1"; transcript_id "ENST00000362570.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.29-201"; exon_number 1; exon_id "ENSE00001806906.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199440.1"; orig_coord_info "chr14,77821030,77821142,-"; Error, chr discrepancy in gtf info for chr14 ENSEMBL exon 88840165 88840263 . + . gene_id "Y_RNA^ENSG00000207342.1"; transcript_id "ENST00000384612.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.535-201"; exon_number 1; exon_id "ENSE00001499620.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207342.1"; orig_coord_info "chr14,88840165,88840263,+"; Error, chr discrepancy in gtf info for chr14 ENSEMBL exon 89650793 89650903 . - . gene_id "Y_RNA^ENSG00000252655.1"; transcript_id "ENST00000516846.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.703-201"; exon_number 1; exon_id "ENSE00002089123.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000252655.1"; orig_coord_info "chr14,89650793,89650903,-"; Error, chr discrepancy in gtf info for chr14 ENSEMBL exon 90177222 90177330 . + . gene_id "Y_RNA^ENSG00000201351.1"; transcript_id "ENST00000364481.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.243-201"; exon_number 1; exon_id "ENSE00001807843.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201351.1"; orig_coord_info "chr14,90177222,90177330,+"; Error, chr discrepancy in gtf info for chr14 ENSEMBL exon 93397139 93397234 . - . gene_id "Y_RNA^ENSG00000202306.1"; transcript_id "ENST00000365436.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.351-201"; exon_number 1; exon_id "ENSE00001807688.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000202306.1"; orig_coord_info "chr14,93397139,93397234,-"; Error, chr discrepancy in gtf info for chr14 ENSEMBL exon 99583017 99583118 . + . gene_id "Y_RNA^ENSG00000200506.1"; transcript_id "ENST00000363636.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.156-201"; exon_number 1; exon_id "ENSE00001808197.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200506.1"; orig_coord_info "chr14,99583017,99583118,+"; Error, chr discrepancy in gtf info for chr14 ENSEMBL exon 102695388 102695495 . + . gene_id "Y_RNA^ENSG00000202459.1"; transcript_id "ENST00000365589.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.370-201"; exon_number 1; exon_id "ENSE00001440352.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000202459.1"; orig_coord_info "chr14,102695388,102695495,+"; Error, chr discrepancy in gtf info for chr14 ENSEMBL exon 103725728 103725825 . - . gene_id "Y_RNA^ENSG00000253096.1"; transcript_id "ENST00000517287.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.723-201"; exon_number 1; exon_id "ENSE00002089564.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000253096.1"; orig_coord_info "chr14,103725728,103725825,-"; Error, chr discrepancy in gtf info for chr15 ENSEMBL exon 30355436 30355540 . + . gene_id "Y_RNA^ENSG00000238783.1"; transcript_id "ENST00000459414.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.641-201"; exon_number 1; exon_id "ENSE00001808340.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000238783.1"; orig_coord_info "chr15,30355436,30355540,+"; Error, chr discrepancy in gtf info for chr15 ENSEMBL exon 30673750 30673843 . + . gene_id "Y_RNA^ENSG00000206846.1"; transcript_id "ENST00000384119.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.439-201"; exon_number 1; exon_id "ENSE00001807836.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206846.1"; orig_coord_info "chr15,30673750,30673843,+"; Error, chr discrepancy in gtf info for chr15 ENSEMBL exon 32175247 32175351 . - . gene_id "Y_RNA^ENSG00000201084.1"; transcript_id "ENST00000364214.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.217-201"; exon_number 1; exon_id "ENSE00001807665.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201084.1"; orig_coord_info "chr15,32175247,32175351,-"; Error, chr discrepancy in gtf info for chr15 ENSEMBL exon 33722492 33722596 . + . gene_id "Y_RNA^ENSG00000200008.1"; transcript_id "ENST00000363138.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.99-201"; exon_number 1; exon_id "ENSE00001437901.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200008.1"; orig_coord_info "chr15,33722492,33722596,+"; Error, chr discrepancy in gtf info for chr15 ENSEMBL exon 34314728 34314828 . + . gene_id "Y_RNA^ENSG00000207091.1"; transcript_id "ENST00000384363.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.479-201"; exon_number 1; exon_id "ENSE00001499372.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207091.1"; orig_coord_info "chr15,34314728,34314828,+"; Error, chr discrepancy in gtf info for chr15 ENSEMBL exon 37050828 37050930 . - . gene_id "Y_RNA^ENSG00000206676.1"; transcript_id "ENST00000383949.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.396-201"; exon_number 1; exon_id "ENSE00001498959.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206676.1"; orig_coord_info "chr15,37050828,37050930,-"; Error, chr discrepancy in gtf info for chr15 ENSEMBL exon 39922782 39922886 . - . gene_id "Y_RNA^ENSG00000200305.1"; transcript_id "ENST00000363435.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.134-201"; exon_number 1; exon_id "ENSE00001438198.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200305.1"; orig_coord_info "chr15,39922782,39922886,-"; Error, chr discrepancy in gtf info for chr15 ENSEMBL exon 43247680 43247781 . + . gene_id "Y_RNA^ENSG00000202211.1"; transcript_id "ENST00000365341.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.341-201"; exon_number 1; exon_id "ENSE00001806972.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000202211.1"; orig_coord_info "chr15,43247680,43247781,+"; Error, chr discrepancy in gtf info for chr15 ENSEMBL exon 43863893 43864005 . - . gene_id "Y_RNA^ENSG00000200391.1"; transcript_id "ENST00000363521.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.144-201"; exon_number 1; exon_id "ENSE00001807864.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200391.1"; orig_coord_info "chr15,43863893,43864005,-"; Error, chr discrepancy in gtf info for chr15 ENSEMBL exon 44697333 44697430 . - . gene_id "Y_RNA^ENSG00000206957.2"; transcript_id "ENST00000384230.2"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.455-201"; exon_number 1; exon_id "ENSE00001808622.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206957.2"; orig_coord_info "chr15,44697333,44697430,-"; Error, chr discrepancy in gtf info for chr15 ENSEMBL exon 44843612 44843724 . + . gene_id "Y_RNA^ENSG00000238845.1"; transcript_id "ENST00000459006.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.644-201"; exon_number 1; exon_id "ENSE00001809046.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000238845.1"; orig_coord_info "chr15,44843612,44843724,+"; Error, chr discrepancy in gtf info for chr15 ENSEMBL exon 45047103 45047215 . - . gene_id "Y_RNA^ENSG00000252171.1"; transcript_id "ENST00000516362.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.674-201"; exon_number 1; exon_id "ENSE00002088639.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000252171.1"; orig_coord_info "chr15,45047103,45047215,-"; Error, chr discrepancy in gtf info for chr15 ENSEMBL exon 45591984 45592085 . + . gene_id "Y_RNA^ENSG00000200419.1"; transcript_id "ENST00000363549.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.146-201"; exon_number 1; exon_id "ENSE00001807827.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200419.1"; orig_coord_info "chr15,45591984,45592085,+"; Error, chr discrepancy in gtf info for chr15 ENSEMBL exon 48325558 48325671 . - . gene_id "Y_RNA^ENSG00000202542.1"; transcript_id "ENST00000365672.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.382-201"; exon_number 1; exon_id "ENSE00001440435.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000202542.1"; orig_coord_info "chr15,48325558,48325671,-"; Error, chr discrepancy in gtf info for chr15 ENSEMBL exon 48995912 48996022 . - . gene_id "Y_RNA^ENSG00000207105.1"; transcript_id "ENST00000384377.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.482-201"; exon_number 1; exon_id "ENSE00001499386.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207105.1"; orig_coord_info "chr15,48995912,48996022,-"; Error, chr discrepancy in gtf info for chr15 ENSEMBL exon 49137762 49137863 . - . gene_id "Y_RNA^ENSG00000200120.1"; transcript_id "ENST00000363250.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.112-201"; exon_number 1; exon_id "ENSE00001807802.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200120.1"; orig_coord_info "chr15,49137762,49137863,-"; Error, chr discrepancy in gtf info for chr15 ENSEMBL exon 50221888 50221996 . + . gene_id "Y_RNA^ENSG00000200605.1"; transcript_id "ENST00000363735.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.167-201"; exon_number 1; exon_id "ENSE00001438498.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200605.1"; orig_coord_info "chr15,50221888,50221996,+"; Error, chr discrepancy in gtf info for chr15 ENSEMBL exon 51884556 51884653 . + . gene_id "Y_RNA^ENSG00000207484.1"; transcript_id "ENST00000384753.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.571-201"; exon_number 1; exon_id "ENSE00001809022.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207484.1"; orig_coord_info "chr15,51884556,51884653,+"; Error, chr discrepancy in gtf info for chr15 ENSEMBL exon 52162751 52162852 . + . gene_id "Y_RNA^ENSG00000206995.1"; transcript_id "ENST00000384268.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.462-201"; exon_number 1; exon_id "ENSE00001809217.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206995.1"; orig_coord_info "chr15,52162751,52162852,+"; Error, chr discrepancy in gtf info for chr15 ENSEMBL exon 56634038 56634167 . - . gene_id "Y_RNA^ENSG00000276696.1"; transcript_id "ENST00000614892.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.802-201"; exon_number 1; exon_id "ENSE00003728266.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000276696.1"; orig_coord_info "chr15,56634038,56634167,-"; Error, chr discrepancy in gtf info for chr15 ENSEMBL exon 59408905 59409015 . + . gene_id "Y_RNA^ENSG00000200252.1"; transcript_id "ENST00000363382.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.126-201"; exon_number 1; exon_id "ENSE00001438145.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200252.1"; orig_coord_info "chr15,59408905,59409015,+"; Error, chr discrepancy in gtf info for chr15 ENSEMBL exon 64111458 64111569 . - . gene_id "Y_RNA^ENSG00000201071.1"; transcript_id "ENST00000364201.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.214-201"; exon_number 1; exon_id "ENSE00001438964.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201071.1"; orig_coord_info "chr15,64111458,64111569,-"; Error, chr discrepancy in gtf info for chr15 ENSEMBL exon 64445130 64445243 . - . gene_id "Y_RNA^ENSG00000206781.1"; transcript_id "ENST00000384054.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.422-201"; exon_number 1; exon_id "ENSE00001806934.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206781.1"; orig_coord_info "chr15,64445130,64445243,-"; Error, chr discrepancy in gtf info for chr15 ENSEMBL exon 64652888 64652989 . + . gene_id "Y_RNA^ENSG00000207223.1"; transcript_id "ENST00000384494.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.506-201"; exon_number 1; exon_id "ENSE00001807849.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207223.1"; orig_coord_info "chr15,64652888,64652989,+"; Error, chr discrepancy in gtf info for chr15 ENSEMBL exon 65502741 65502836 . + . gene_id "Y_RNA^ENSG00000252217.1"; transcript_id "ENST00000516408.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.678-201"; exon_number 1; exon_id "ENSE00002088685.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000252217.1"; orig_coord_info "chr15,65502741,65502836,+"; Error, chr discrepancy in gtf info for chr15 ENSEMBL exon 66348276 66348375 . + . gene_id "Y_RNA^ENSG00000223271.1"; transcript_id "ENST00000411339.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.628-201"; exon_number 1; exon_id "ENSE00001591157.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000223271.1"; orig_coord_info "chr15,66348276,66348375,+"; Error, chr discrepancy in gtf info for chr15 ENSEMBL exon 69406441 69406552 . + . gene_id "Y_RNA^ENSG00000207395.1"; transcript_id "ENST00000384665.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.552-201"; exon_number 1; exon_id "ENSE00001807872.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207395.1"; orig_coord_info "chr15,69406441,69406552,+"; Error, chr discrepancy in gtf info for chr15 ENSEMBL exon 74983274 74983376 . - . gene_id "Y_RNA^ENSG00000199580.1"; transcript_id "ENST00000362710.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.48-201"; exon_number 1; exon_id "ENSE00001808100.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199580.1"; orig_coord_info "chr15,74983274,74983376,-"; Error, chr discrepancy in gtf info for chr15 ENSEMBL exon 90977208 90977305 . - . gene_id "Y_RNA^ENSG00000200142.1"; transcript_id "ENST00000363272.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.115-201"; exon_number 1; exon_id "ENSE00001438035.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200142.1"; orig_coord_info "chr15,90977208,90977305,-"; Error, chr discrepancy in gtf info for chr15 ENSEMBL exon 99681786 99681877 . - . gene_id "Y_RNA^ENSG00000201724.1"; transcript_id "ENST00000364854.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.288-201"; exon_number 1; exon_id "ENSE00001439617.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201724.1"; orig_coord_info "chr15,99681786,99681877,-"; Error, chr discrepancy in gtf info for chr15 ENSEMBL exon 100638363 100638457 . + . gene_id "Y_RNA^ENSG00000212306.1"; transcript_id "ENST00000391004.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.580-201"; exon_number 1; exon_id "ENSE00001508788.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000212306.1"; orig_coord_info "chr15,100638363,100638457,+"; Error, chr discrepancy in gtf info for chr16 ENSEMBL exon 178554 178656 . + . gene_id "Y_RNA^ENSG00000207243.1"; transcript_id "ENST00000384514.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.511-201"; exon_number 1; exon_id "ENSE00001499522.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207243.1"; orig_coord_info "chr16,178554,178656,+"; Error, chr discrepancy in gtf info for chr16 ENSEMBL exon 439297 439397 . - . gene_id "Y_RNA^ENSG00000201034.1"; transcript_id "ENST00000364164.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.211-201"; exon_number 1; exon_id "ENSE00001438927.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201034.1"; orig_coord_info "chr16,439297,439397,-"; Error, chr discrepancy in gtf info for chr16 ENSEMBL exon 2131851 2131950 . + . gene_id "Y_RNA^ENSG00000200059.1"; transcript_id "ENST00000363189.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.106-201"; exon_number 1; exon_id "ENSE00001806884.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200059.1"; orig_coord_info "chr16,2131851,2131950,+"; Error, chr discrepancy in gtf info for chr16 ENSEMBL exon 11315067 11315178 . + . gene_id "Y_RNA^ENSG00000199668.1"; transcript_id "ENST00000362798.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.56-201"; exon_number 1; exon_id "ENSE00001807751.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199668.1"; orig_coord_info "chr16,11315067,11315178,+"; Error, chr discrepancy in gtf info for chr16 ENSEMBL exon 14275508 14275600 . + . gene_id "Y_RNA^ENSG00000201075.2"; transcript_id "ENST00000364205.2"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.216-201"; exon_number 1; exon_id "ENSE00001438968.2"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201075.2"; orig_coord_info "chr16,14275508,14275600,+"; Error, chr discrepancy in gtf info for chr16 ENSEMBL exon 14915457 14915556 . - . gene_id "Y_RNA^ENSG00000207425.1"; transcript_id "ENST00000384694.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.561-201"; exon_number 1; exon_id "ENSE00001807247.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207425.1"; orig_coord_info "chr16,14915457,14915556,-"; Error, chr discrepancy in gtf info for chr16 ENSEMBL exon 15150697 15150796 . + . gene_id "Y_RNA^ENSG00000207294.1"; transcript_id "ENST00000384564.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.524-201"; exon_number 1; exon_id "ENSE00001808327.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207294.1"; orig_coord_info "chr16,15150697,15150796,+"; Error, chr discrepancy in gtf info for chr16 ENSEMBL exon 16314112 16314211 . - . gene_id "Y_RNA^ENSG00000206706.1"; transcript_id "ENST00000383979.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.405-201"; exon_number 1; exon_id "ENSE00001807240.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206706.1"; orig_coord_info "chr16,16314112,16314211,-"; Error, chr discrepancy in gtf info for chr16 ENSEMBL exon 18397937 18398036 . + . gene_id "Y_RNA^ENSG00000206927.1"; transcript_id "ENST00000384200.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.451-201"; exon_number 1; exon_id "ENSE00001808888.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206927.1"; orig_coord_info "chr16,18397937,18398036,+"; Error, chr discrepancy in gtf info for chr16 ENSEMBL exon 27722284 27722392 . - . gene_id "Y_RNA^ENSG00000201371.1"; transcript_id "ENST00000364501.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.248-201"; exon_number 1; exon_id "ENSE00001439264.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201371.1"; orig_coord_info "chr16,27722284,27722392,-"; Error, chr discrepancy in gtf info for chr16 ENSEMBL exon 30453997 30454097 . - . gene_id "Y_RNA^ENSG00000202476.1"; transcript_id "ENST00000365606.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.374-201"; exon_number 1; exon_id "ENSE00001809070.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000202476.1"; orig_coord_info "chr16,30453997,30454097,-"; Error, chr discrepancy in gtf info for chr16 ENSEMBL exon 30471587 30471703 . + . gene_id "Y_RNA^ENSG00000222701.1"; transcript_id "ENST00000410769.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.615-201"; exon_number 1; exon_id "ENSE00001590587.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000222701.1"; orig_coord_info "chr16,30471587,30471703,+"; Error, chr discrepancy in gtf info for chr16 ENSEMBL exon 47313027 47313121 . - . gene_id "Y_RNA^ENSG00000222767.1"; transcript_id "ENST00000410835.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.616-201"; exon_number 1; exon_id "ENSE00001590653.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000222767.1"; orig_coord_info "chr16,47313027,47313121,-"; Error, chr discrepancy in gtf info for chr16 ENSEMBL exon 58083068 58083168 . - . gene_id "Y_RNA^ENSG00000207173.1"; transcript_id "ENST00000384444.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.496-201"; exon_number 1; exon_id "ENSE00001808092.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207173.1"; orig_coord_info "chr16,58083068,58083168,-"; Error, chr discrepancy in gtf info for chr16 ENSEMBL exon 66550457 66550567 . + . gene_id "Y_RNA^ENSG00000275745.1"; transcript_id "ENST00000411222.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.793-201"; exon_number 1; exon_id "ENSE00001591040.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000275745.1"; orig_coord_info "chr16,66550457,66550567,+"; Error, chr discrepancy in gtf info for chr16 ENSEMBL exon 68089449 68089543 . - . gene_id "Y_RNA^ENSG00000201850.1"; transcript_id "ENST00000364980.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.300-201"; exon_number 1; exon_id "ENSE00001439743.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201850.1"; orig_coord_info "chr16,68089449,68089543,-"; Error, chr discrepancy in gtf info for chr16 ENSEMBL exon 68474553 68474664 . - . gene_id "Y_RNA^ENSG00000199263.1"; transcript_id "ENST00000362393.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.12-201"; exon_number 1; exon_id "ENSE00001809000.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199263.1"; orig_coord_info "chr16,68474553,68474664,-"; Error, chr discrepancy in gtf info for chr16 ENSEMBL exon 68885576 68885677 . - . gene_id "Y_RNA^ENSG00000199979.1"; transcript_id "ENST00000363109.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.98-201"; exon_number 1; exon_id "ENSE00001437872.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199979.1"; orig_coord_info "chr16,68885576,68885677,-"; Error, chr discrepancy in gtf info for chr16 ENSEMBL exon 69191123 69191223 . + . gene_id "Y_RNA^ENSG00000200164.1"; transcript_id "ENST00000363294.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.117-201"; exon_number 1; exon_id "ENSE00001438057.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200164.1"; orig_coord_info "chr16,69191123,69191223,+"; Error, chr discrepancy in gtf info for chr16 ENSEMBL exon 74463888 74463988 . - . gene_id "Y_RNA^ENSG00000207525.1"; transcript_id "ENST00000384794.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.577-201"; exon_number 1; exon_id "ENSE00001806915.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207525.1"; orig_coord_info "chr16,74463888,74463988,-"; Error, chr discrepancy in gtf info for chr16 ENSEMBL exon 86275429 86275523 . - . gene_id "Y_RNA^ENSG00000199949.2"; transcript_id "ENST00000363079.2"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.95-201"; exon_number 1; exon_id "ENSE00001437842.2"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199949.2"; orig_coord_info "chr16,86275429,86275523,-"; Error, chr discrepancy in gtf info for chr17 ENSEMBL exon 4186326 4186424 . + . gene_id "Y_RNA^ENSG00000251812.1"; transcript_id "ENST00000516003.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.661-201"; exon_number 1; exon_id "ENSE00002088280.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000251812.1"; orig_coord_info "chr17,4186326,4186424,+"; Error, chr discrepancy in gtf info for chr17 ENSEMBL exon 7266055 7266166 . - . gene_id "Y_RNA^ENSG00000202251.1"; transcript_id "ENST00000365381.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.344-201"; exon_number 1; exon_id "ENSE00001440144.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000202251.1"; orig_coord_info "chr17,7266055,7266166,-"; Error, chr discrepancy in gtf info for chr17 ENSEMBL exon 7537096 7537196 . - . gene_id "Y_RNA^ENSG00000201489.1"; transcript_id "ENST00000364619.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.259-201"; exon_number 1; exon_id "ENSE00001439382.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201489.1"; orig_coord_info "chr17,7537096,7537196,-"; Error, chr discrepancy in gtf info for chr17 ENSEMBL exon 17460444 17460522 . + . gene_id "Y_RNA^ENSG00000201741.1"; transcript_id "ENST00000364871.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.289-201"; exon_number 1; exon_id "ENSE00001439634.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201741.1"; orig_coord_info "chr17,17460444,17460522,+"; Error, chr discrepancy in gtf info for chr17 ENSEMBL exon 19649494 19649587 . - . gene_id "Y_RNA^ENSG00000275982.1"; transcript_id "ENST00000515977.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.797-201"; exon_number 1; exon_id "ENSE00002088254.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000275982.1"; orig_coord_info "chr17,19649494,19649587,-"; Error, chr discrepancy in gtf info for chr17 ENSEMBL exon 28834722 28834822 . + . gene_id "Y_RNA^ENSG00000238516.1"; transcript_id "ENST00000459041.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.635-201"; exon_number 1; exon_id "ENSE00001808455.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000238516.1"; orig_coord_info "chr17,28834722,28834822,+"; Error, chr discrepancy in gtf info for chr17 ENSEMBL exon 30344503 30344604 . - . gene_id "Y_RNA^ENSG00000207132.1"; transcript_id "ENST00000384403.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.488-201"; exon_number 1; exon_id "ENSE00001808391.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207132.1"; orig_coord_info "chr17,30344503,30344604,-"; Error, chr discrepancy in gtf info for chr17 ENSEMBL exon 32463374 32463482 . - . gene_id "Y_RNA^ENSG00000202100.1"; transcript_id "ENST00000365230.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.330-201"; exon_number 1; exon_id "ENSE00001439993.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000202100.1"; orig_coord_info "chr17,32463374,32463482,-"; Error, chr discrepancy in gtf info for chr17 ENSEMBL exon 32830219 32830329 . - . gene_id "Y_RNA^ENSG00000201178.1"; transcript_id "ENST00000364308.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.224-201"; exon_number 1; exon_id "ENSE00001808494.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201178.1"; orig_coord_info "chr17,32830219,32830329,-"; Error, chr discrepancy in gtf info for chr17 ENSEMBL exon 36285312 36285413 . + . gene_id "Y_RNA^ENSG00000265889.1"; transcript_id "ENST00000476024.2"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.754-201"; exon_number 1; exon_id "ENSE00002691600.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000265889.1"; orig_coord_info "chr17,36285312,36285413,+"; Error, chr discrepancy in gtf info for chr17 ENSEMBL exon 38089399 38089500 . + . gene_id "Y_RNA^ENSG00000275006.1"; transcript_id "ENST00000614282.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.790-201"; exon_number 1; exon_id "ENSE00003733366.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000275006.1"; orig_coord_info "chr17,38089399,38089500,+"; Error, chr discrepancy in gtf info for chr17 ENSEMBL exon 38231043 38231144 . - . gene_id "Y_RNA^ENSG00000274284.1"; transcript_id "ENST00000614695.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.782-201"; exon_number 1; exon_id "ENSE00003725470.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000274284.1"; orig_coord_info "chr17,38231043,38231144,-"; Error, chr discrepancy in gtf info for chr17 ENSEMBL exon 40391232 40391338 . - . gene_id "Y_RNA^ENSG00000222881.1"; transcript_id "ENST00000410949.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.618-201"; exon_number 1; exon_id "ENSE00001590767.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000222881.1"; orig_coord_info "chr17,40391232,40391338,-"; Error, chr discrepancy in gtf info for chr17 ENSEMBL exon 45071442 45071543 . + . gene_id "Y_RNA^ENSG00000200888.1"; transcript_id "ENST00000364018.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.200-201"; exon_number 1; exon_id "ENSE00001808666.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200888.1"; orig_coord_info "chr17,45071442,45071543,+"; Error, chr discrepancy in gtf info for chr17 ENSEMBL exon 46215070 46215171 . - . gene_id "Y_RNA^ENSG00000238723.1"; transcript_id "ENST00000458981.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.639-201"; exon_number 1; exon_id "ENSE00001808005.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000238723.1"; orig_coord_info "chr17,46215070,46215171,-"; Error, chr discrepancy in gtf info for chr17 ENSEMBL exon 47557413 47557514 . + . gene_id "Y_RNA^ENSG00000206734.1"; transcript_id "ENST00000384007.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.413-201"; exon_number 1; exon_id "ENSE00001808416.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206734.1"; orig_coord_info "chr17,47557413,47557514,+"; Error, chr discrepancy in gtf info for chr17 ENSEMBL exon 48479097 48479198 . + . gene_id "Y_RNA^ENSG00000206805.1"; transcript_id "ENST00000384078.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.428-201"; exon_number 1; exon_id "ENSE00001809047.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206805.1"; orig_coord_info "chr17,48479097,48479198,+"; Error, chr discrepancy in gtf info for chr17 ENSEMBL exon 49416744 49416850 . - . gene_id "Y_RNA^ENSG00000207127.1"; transcript_id "ENST00000384398.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.486-201"; exon_number 1; exon_id "ENSE00001809112.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207127.1"; orig_coord_info "chr17,49416744,49416850,-"; Error, chr discrepancy in gtf info for chr17 ENSEMBL exon 50386145 50386246 . - . gene_id "Y_RNA^ENSG00000206824.1"; transcript_id "ENST00000384097.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.436-201"; exon_number 1; exon_id "ENSE00001808547.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206824.1"; orig_coord_info "chr17,50386145,50386246,-"; Error, chr discrepancy in gtf info for chr17 ENSEMBL exon 50696644 50696760 . + . gene_id "Y_RNA^ENSG00000201340.1"; transcript_id "ENST00000364470.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.241-201"; exon_number 1; exon_id "ENSE00001439233.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201340.1"; orig_coord_info "chr17,50696644,50696760,+"; Error, chr discrepancy in gtf info for chr17 ENSEMBL exon 59260748 59260846 . + . gene_id "Y_RNA^ENSG00000207235.1"; transcript_id "ENST00000384506.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.509-201"; exon_number 1; exon_id "ENSE00001499514.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207235.1"; orig_coord_info "chr17,59260748,59260846,+"; Error, chr discrepancy in gtf info for chr17 ENSEMBL exon 60748940 60749046 . - . gene_id "Y_RNA^ENSG00000252534.1"; transcript_id "ENST00000516725.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.696-201"; exon_number 1; exon_id "ENSE00002089002.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000252534.1"; orig_coord_info "chr17,60748940,60749046,-"; Error, chr discrepancy in gtf info for chr17 ENSEMBL exon 61874084 61874182 . - . gene_id "Y_RNA^ENSG00000202361.1"; transcript_id "ENST00000365491.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.358-201"; exon_number 1; exon_id "ENSE00001440254.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000202361.1"; orig_coord_info "chr17,61874084,61874182,-"; Error, chr discrepancy in gtf info for chr17 ENSEMBL exon 62036833 62036945 . + . gene_id "Y_RNA^ENSG00000200842.1"; transcript_id "ENST00000363972.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.191-201"; exon_number 1; exon_id "ENSE00001438735.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200842.1"; orig_coord_info "chr17,62036833,62036945,+"; Error, chr discrepancy in gtf info for chr17 ENSEMBL exon 62122320 62122421 . + . gene_id "Y_RNA^ENSG00000207123.1"; transcript_id "ENST00000384395.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.485-201"; exon_number 1; exon_id "ENSE00001808261.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207123.1"; orig_coord_info "chr17,62122320,62122421,+"; Error, chr discrepancy in gtf info for chr17 ENSEMBL exon 62661621 62661725 . - . gene_id "Y_RNA^ENSG00000207382.1"; transcript_id "ENST00000384652.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.545-201"; exon_number 1; exon_id "ENSE00001499660.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207382.1"; orig_coord_info "chr17,62661621,62661725,-"; Error, chr discrepancy in gtf info for chr17 ENSEMBL exon 64390158 64390263 . - . gene_id "Y_RNA^ENSG00000239823.2"; transcript_id "ENST00000497848.2"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.654-201"; exon_number 1; exon_id "ENSE00001917466.2"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000239823.2"; orig_coord_info "chr17,64390158,64390263,-"; Error, chr discrepancy in gtf info for chr17 ENSEMBL exon 67408774 67408881 . - . gene_id "Y_RNA^ENSG00000201547.1"; transcript_id "ENST00000364677.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.265-201"; exon_number 1; exon_id "ENSE00001439440.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201547.1"; orig_coord_info "chr17,67408774,67408881,-"; Error, chr discrepancy in gtf info for chr17 ENSEMBL exon 69985986 69986094 . + . gene_id "Y_RNA^ENSG00000199801.1"; transcript_id "ENST00000362931.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.76-201"; exon_number 1; exon_id "ENSE00001437694.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199801.1"; orig_coord_info "chr17,69985986,69986094,+"; Error, chr discrepancy in gtf info for chr17 ENSEMBL exon 75089862 75089974 . - . gene_id "Y_RNA^ENSG00000206713.1"; transcript_id "ENST00000383986.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.407-201"; exon_number 1; exon_id "ENSE00001809192.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206713.1"; orig_coord_info "chr17,75089862,75089974,-"; Error, chr discrepancy in gtf info for chr17 ENSEMBL exon 75145670 75145762 . + . gene_id "Y_RNA^ENSG00000252042.1"; transcript_id "ENST00000516233.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.668-201"; exon_number 1; exon_id "ENSE00002088510.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000252042.1"; orig_coord_info "chr17,75145670,75145762,+"; Error, chr discrepancy in gtf info for chr17 ENSEMBL exon 75431990 75432087 . + . gene_id "Y_RNA^ENSG00000202332.1"; transcript_id "ENST00000365462.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.355-201"; exon_number 1; exon_id "ENSE00001808460.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000202332.1"; orig_coord_info "chr17,75431990,75432087,+"; Error, chr discrepancy in gtf info for chr17 ENSEMBL exon 76319376 76319473 . + . gene_id "Y_RNA^ENSG00000251779.1"; transcript_id "ENST00000515970.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.656-201"; exon_number 1; exon_id "ENSE00002088247.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000251779.1"; orig_coord_info "chr17,76319376,76319473,+"; Error, chr discrepancy in gtf info for chr17 ENSEMBL exon 77442109 77442213 . + . gene_id "Y_RNA^ENSG00000200651.1"; transcript_id "ENST00000363781.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.174-201"; exon_number 1; exon_id "ENSE00001438544.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200651.1"; orig_coord_info "chr17,77442109,77442213,+"; Error, chr discrepancy in gtf info for chr17 ENSEMBL exon 81573490 81573602 . + . gene_id "Y_RNA^ENSG00000207021.1"; transcript_id "ENST00000384294.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.466-201"; exon_number 1; exon_id "ENSE00001808426.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207021.1"; orig_coord_info "chr17,81573490,81573602,+"; Error, chr discrepancy in gtf info for chr17 ENSEMBL exon 82417226 82417321 . + . gene_id "Y_RNA^ENSG00000201239.1"; transcript_id "ENST00000364369.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.232-201"; exon_number 1; exon_id "ENSE00001439132.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201239.1"; orig_coord_info "chr17,82417226,82417321,+"; Error, chr discrepancy in gtf info for chr18 ENSEMBL exon 2621090 2621201 . + . gene_id "Y_RNA^ENSG00000202224.1"; transcript_id "ENST00000365354.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.343-201"; exon_number 1; exon_id "ENSE00001808283.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000202224.1"; orig_coord_info "chr18,2621090,2621201,+"; Error, chr discrepancy in gtf info for chr18 ENSEMBL exon 2778941 2779057 . + . gene_id "Y_RNA^ENSG00000207034.1"; transcript_id "ENST00000384307.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.470-201"; exon_number 1; exon_id "ENSE00001499316.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207034.1"; orig_coord_info "chr18,2778941,2779057,+"; Error, chr discrepancy in gtf info for chr18 ENSEMBL exon 8720034 8720132 . - . gene_id "Y_RNA^ENSG00000252319.1"; transcript_id "ENST00000516510.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.684-201"; exon_number 1; exon_id "ENSE00002088787.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000252319.1"; orig_coord_info "chr18,8720034,8720132,-"; Error, chr discrepancy in gtf info for chr18 ENSEMBL exon 9249649 9249746 . - . gene_id "Y_RNA^ENSG00000200883.1"; transcript_id "ENST00000364013.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.198-201"; exon_number 1; exon_id "ENSE00001438776.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200883.1"; orig_coord_info "chr18,9249649,9249746,-"; Error, chr discrepancy in gtf info for chr18 ENSEMBL exon 9250110 9250211 . + . gene_id "Y_RNA^ENSG00000207092.1"; transcript_id "ENST00000384364.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.480-201"; exon_number 1; exon_id "ENSE00001807772.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207092.1"; orig_coord_info "chr18,9250110,9250211,+"; Error, chr discrepancy in gtf info for chr18 ENSEMBL exon 12760717 12760818 . + . gene_id "Y_RNA^ENSG00000201466.1"; transcript_id "ENST00000364596.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.257-201"; exon_number 1; exon_id "ENSE00001806899.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201466.1"; orig_coord_info "chr18,12760717,12760818,+"; Error, chr discrepancy in gtf info for chr18 ENSEMBL exon 21724119 21724229 . + . gene_id "Y_RNA^ENSG00000200750.1"; transcript_id "ENST00000363880.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.182-201"; exon_number 1; exon_id "ENSE00001438643.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200750.1"; orig_coord_info "chr18,21724119,21724229,+"; Error, chr discrepancy in gtf info for chr18 ENSEMBL exon 23024596 23024703 . + . gene_id "Y_RNA^ENSG00000223023.1"; transcript_id "ENST00000411091.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.622-201"; exon_number 1; exon_id "ENSE00001590909.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000223023.1"; orig_coord_info "chr18,23024596,23024703,+"; Error, chr discrepancy in gtf info for chr18 ENSEMBL exon 23456371 23456467 . + . gene_id "Y_RNA^ENSG00000199357.1"; transcript_id "ENST00000362487.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.21-201"; exon_number 1; exon_id "ENSE00001437250.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199357.1"; orig_coord_info "chr18,23456371,23456467,+"; Error, chr discrepancy in gtf info for chr18 ENSEMBL exon 23582016 23582121 . - . gene_id "Y_RNA^ENSG00000199366.1"; transcript_id "ENST00000362496.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.23-201"; exon_number 1; exon_id "ENSE00001437259.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199366.1"; orig_coord_info "chr18,23582016,23582121,-"; Error, chr discrepancy in gtf info for chr18 ENSEMBL exon 24429505 24429609 . + . gene_id "Y_RNA^ENSG00000199636.1"; transcript_id "ENST00000362766.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.54-201"; exon_number 1; exon_id "ENSE00001437529.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199636.1"; orig_coord_info "chr18,24429505,24429609,+"; Error, chr discrepancy in gtf info for chr18 ENSEMBL exon 31382317 31382430 . + . gene_id "Y_RNA^ENSG00000207240.1"; transcript_id "ENST00000384511.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.510-201"; exon_number 1; exon_id "ENSE00001806935.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207240.1"; orig_coord_info "chr18,31382317,31382430,+"; Error, chr discrepancy in gtf info for chr18 ENSEMBL exon 32263135 32263234 . - . gene_id "Y_RNA^ENSG00000222395.2"; transcript_id "ENST00000410463.2"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.597-201"; exon_number 1; exon_id "ENSE00001590281.2"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000222395.2"; orig_coord_info "chr18,32263135,32263234,-"; Error, chr discrepancy in gtf info for chr18 ENSEMBL exon 34001698 34001799 . - . gene_id "Y_RNA^ENSG00000199204.1"; transcript_id "ENST00000362334.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.5-201"; exon_number 1; exon_id "ENSE00001808663.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199204.1"; orig_coord_info "chr18,34001698,34001799,-"; Error, chr discrepancy in gtf info for chr18 ENSEMBL exon 49871555 49871666 . - . gene_id "Y_RNA^ENSG00000201668.1"; transcript_id "ENST00000364798.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.283-201"; exon_number 1; exon_id "ENSE00001808485.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201668.1"; orig_coord_info "chr18,49871555,49871666,-"; Error, chr discrepancy in gtf info for chr18 ENSEMBL exon 50959267 50959379 . - . gene_id "Y_RNA^ENSG00000200752.1"; transcript_id "ENST00000363882.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.183-201"; exon_number 1; exon_id "ENSE00001807919.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200752.1"; orig_coord_info "chr18,50959267,50959379,-"; Error, chr discrepancy in gtf info for chr18 ENSEMBL exon 56753226 56753326 . - . gene_id "Y_RNA^ENSG00000206865.1"; transcript_id "ENST00000384138.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.444-201"; exon_number 1; exon_id "ENSE00001806939.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206865.1"; orig_coord_info "chr18,56753226,56753326,-"; Error, chr discrepancy in gtf info for chr18 ENSEMBL exon 62330812 62330913 . + . gene_id "Y_RNA^ENSG00000199867.1"; transcript_id "ENST00000362997.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.81-201"; exon_number 1; exon_id "ENSE00001808308.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199867.1"; orig_coord_info "chr18,62330812,62330913,+"; Error, chr discrepancy in gtf info for chr18 ENSEMBL exon 78544095 78544188 . - . gene_id "Y_RNA^ENSG00000201723.2"; transcript_id "ENST00000364853.2"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.287-201"; exon_number 1; exon_id "ENSE00001439616.2"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201723.2"; orig_coord_info "chr18,78544095,78544188,-"; Error, chr discrepancy in gtf info for chr19 ENSEMBL exon 6572956 6573057 . - . gene_id "Y_RNA^ENSG00000199223.1"; transcript_id "ENST00000362353.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.8-201"; exon_number 1; exon_id "ENSE00001807837.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199223.1"; orig_coord_info "chr19,6572956,6573057,-"; Error, chr discrepancy in gtf info for chr19 ENSEMBL exon 11408772 11408880 . + . gene_id "Y_RNA^ENSG00000202357.1"; transcript_id "ENST00000365487.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.357-201"; exon_number 1; exon_id "ENSE00001807264.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000202357.1"; orig_coord_info "chr19,11408772,11408880,+"; Error, chr discrepancy in gtf info for chr19 ENSEMBL exon 12088245 12088346 . - . gene_id "Y_RNA^ENSG00000199444.1"; transcript_id "ENST00000362574.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.31-201"; exon_number 1; exon_id "ENSE00001807109.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199444.1"; orig_coord_info "chr19,12088245,12088346,-"; Error, chr discrepancy in gtf info for chr19 ENSEMBL exon 36203347 36203459 . - . gene_id "Y_RNA^ENSG00000200179.1"; transcript_id "ENST00000363309.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.121-201"; exon_number 1; exon_id "ENSE00001438072.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200179.1"; orig_coord_info "chr19,36203347,36203459,-"; Error, chr discrepancy in gtf info for chr19 ENSEMBL exon 36858227 36858329 . - . gene_id "Y_RNA^ENSG00000206669.1"; transcript_id "ENST00000383942.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.394-201"; exon_number 1; exon_id "ENSE00001498952.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206669.1"; orig_coord_info "chr19,36858227,36858329,-"; Error, chr discrepancy in gtf info for chr19 ENSEMBL exon 38294544 38294636 . + . gene_id "Y_RNA^ENSG00000200209.1"; transcript_id "ENST00000363339.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.124-201"; exon_number 1; exon_id "ENSE00001438102.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200209.1"; orig_coord_info "chr19,38294544,38294636,+"; Error, chr discrepancy in gtf info for chr19 ENSEMBL exon 40339059 40339164 . - . gene_id "Y_RNA^ENSG00000207281.1"; transcript_id "ENST00000384551.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.517-201"; exon_number 1; exon_id "ENSE00001499559.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207281.1"; orig_coord_info "chr19,40339059,40339164,-"; Error, chr discrepancy in gtf info for chr19 ENSEMBL exon 40342329 40342441 . + . gene_id "Y_RNA^ENSG00000206925.1"; transcript_id "ENST00000384198.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.450-201"; exon_number 1; exon_id "ENSE00001808798.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206925.1"; orig_coord_info "chr19,40342329,40342441,+"; Error, chr discrepancy in gtf info for chr19 ENSEMBL exon 46736312 46736419 . + . gene_id "Y_RNA^ENSG00000222614.1"; transcript_id "ENST00000410682.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.611-201"; exon_number 1; exon_id "ENSE00001590500.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000222614.1"; orig_coord_info "chr19,46736312,46736419,+"; Error, chr discrepancy in gtf info for chr19 ENSEMBL exon 49566672 49566772 . + . gene_id "Y_RNA^ENSG00000207073.1"; transcript_id "ENST00000384345.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.475-201"; exon_number 1; exon_id "ENSE00001807230.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207073.1"; orig_coord_info "chr19,49566672,49566772,+"; Error, chr discrepancy in gtf info for chr19 ENSEMBL exon 52259076 52259187 . - . gene_id "Y_RNA^ENSG00000207265.1"; transcript_id "ENST00000384535.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.515-201"; exon_number 1; exon_id "ENSE00001808726.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207265.1"; orig_coord_info "chr19,52259076,52259187,-"; Error, chr discrepancy in gtf info for chr19 ENSEMBL exon 56105416 56105510 . + . gene_id "Y_RNA^ENSG00000223060.1"; transcript_id "ENST00000411128.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.623-201"; exon_number 1; exon_id "ENSE00001590946.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000223060.1"; orig_coord_info "chr19,56105416,56105510,+"; Error, chr discrepancy in gtf info for chr19 ENSEMBL exon 56316524 56316636 . - . gene_id "Y_RNA^ENSG00000200646.1"; transcript_id "ENST00000363776.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.173-201"; exon_number 1; exon_id "ENSE00001808364.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200646.1"; orig_coord_info "chr19,56316524,56316636,-"; Error, chr discrepancy in gtf info for chr20 ENSEMBL exon 450663 450762 . + . gene_id "Y_RNA^ENSG00000206797.1"; transcript_id "ENST00000384070.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.427-201"; exon_number 1; exon_id "ENSE00001499080.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206797.1"; orig_coord_info "chr20,450663,450762,+"; Error, chr discrepancy in gtf info for chr20 ENSEMBL exon 2453010 2453117 . - . gene_id "Y_RNA^ENSG00000207305.1"; transcript_id "ENST00000384575.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.528-201"; exon_number 1; exon_id "ENSE00001807045.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207305.1"; orig_coord_info "chr20,2453010,2453117,-"; Error, chr discrepancy in gtf info for chr20 ENSEMBL exon 5113993 5114083 . - . gene_id "Y_RNA^ENSG00000252367.1"; transcript_id "ENST00000516558.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.687-201"; exon_number 1; exon_id "ENSE00002088835.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000252367.1"; orig_coord_info "chr20,5113993,5114083,-"; Error, chr discrepancy in gtf info for chr20 ENSEMBL exon 5964538 5964650 . + . gene_id "Y_RNA^ENSG00000207380.1"; transcript_id "ENST00000384650.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.544-201"; exon_number 1; exon_id "ENSE00001808591.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207380.1"; orig_coord_info "chr20,5964538,5964650,+"; Error, chr discrepancy in gtf info for chr20 ENSEMBL exon 16670641 16670742 . - . gene_id "Y_RNA^ENSG00000200494.1"; transcript_id "ENST00000363624.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.154-201"; exon_number 1; exon_id "ENSE00001808463.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200494.1"; orig_coord_info "chr20,16670641,16670742,-"; Error, chr discrepancy in gtf info for chr20 ENSEMBL exon 18113467 18113579 . - . gene_id "Y_RNA^ENSG00000207282.1"; transcript_id "ENST00000384552.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.518-201"; exon_number 1; exon_id "ENSE00001807462.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207282.1"; orig_coord_info "chr20,18113467,18113579,-"; Error, chr discrepancy in gtf info for chr20 ENSEMBL exon 23457584 23457685 . - . gene_id "Y_RNA^ENSG00000200208.1"; transcript_id "ENST00000363338.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.123-201"; exon_number 1; exon_id "ENSE00001808273.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200208.1"; orig_coord_info "chr20,23457584,23457685,-"; Error, chr discrepancy in gtf info for chr20 ENSEMBL exon 25214698 25214798 . + . gene_id "Y_RNA^ENSG00000202414.1"; transcript_id "ENST00000365544.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.367-201"; exon_number 1; exon_id "ENSE00001440307.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000202414.1"; orig_coord_info "chr20,25214698,25214798,+"; Error, chr discrepancy in gtf info for chr20 ENSEMBL exon 29575060 29575171 . + . gene_id "Y_RNA^ENSG00000283592.1"; transcript_id "ENST00000638104.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.827-201"; exon_number 1; exon_id "ENSE00003797269.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000283592.1"; orig_coord_info "chr20,29575060,29575171,+"; Error, chr discrepancy in gtf info for chr20 ENSEMBL exon 30309015 30309126 . - . gene_id "Y_RNA^ENSG00000200325.1"; transcript_id "ENST00000363455.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.137-201"; exon_number 1; exon_id "ENSE00001807551.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200325.1"; orig_coord_info "chr20,30309015,30309126,-"; Error, chr discrepancy in gtf info for chr20 ENSEMBL exon 34384165 34384265 . - . gene_id "Y_RNA^ENSG00000201498.1"; transcript_id "ENST00000364628.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.260-201"; exon_number 1; exon_id "ENSE00001439391.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201498.1"; orig_coord_info "chr20,34384165,34384265,-"; Error, chr discrepancy in gtf info for chr20 ENSEMBL exon 34526510 34526606 . - . gene_id "Y_RNA^ENSG00000206582.1"; transcript_id "ENST00000383855.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.383-201"; exon_number 1; exon_id "ENSE00001808736.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206582.1"; orig_coord_info "chr20,34526510,34526606,-"; Error, chr discrepancy in gtf info for chr20 ENSEMBL exon 35853252 35853364 . - . gene_id "Y_RNA^ENSG00000199676.1"; transcript_id "ENST00000362806.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.57-201"; exon_number 1; exon_id "ENSE00001437569.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199676.1"; orig_coord_info "chr20,35853252,35853364,-"; Error, chr discrepancy in gtf info for chr20 ENSEMBL exon 36668559 36668670 . - . gene_id "Y_RNA^ENSG00000202255.1"; transcript_id "ENST00000365385.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.346-201"; exon_number 1; exon_id "ENSE00001808305.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000202255.1"; orig_coord_info "chr20,36668559,36668670,-"; Error, chr discrepancy in gtf info for chr20 ENSEMBL exon 43451159 43451260 . - . gene_id "Y_RNA^ENSG00000206998.1"; transcript_id "ENST00000384271.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.463-201"; exon_number 1; exon_id "ENSE00001809038.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206998.1"; orig_coord_info "chr20,43451159,43451260,-"; Error, chr discrepancy in gtf info for chr20 ENSEMBL exon 44344839 44344933 . + . gene_id "Y_RNA^ENSG00000201363.2"; transcript_id "ENST00000364493.2"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.245-201"; exon_number 1; exon_id "ENSE00001439256.2"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201363.2"; orig_coord_info "chr20,44344839,44344933,+"; Error, chr discrepancy in gtf info for chr20 ENSEMBL exon 45004348 45004454 . + . gene_id "Y_RNA^ENSG00000252021.1"; transcript_id "ENST00000516212.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.667-201"; exon_number 1; exon_id "ENSE00002088489.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000252021.1"; orig_coord_info "chr20,45004348,45004454,+"; Error, chr discrepancy in gtf info for chr20 ENSEMBL exon 49920597 49920694 . - . gene_id "Y_RNA^ENSG00000199490.1"; transcript_id "ENST00000362620.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.39-201"; exon_number 1; exon_id "ENSE00001808834.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199490.1"; orig_coord_info "chr20,49920597,49920694,-"; Error, chr discrepancy in gtf info for chr20 ENSEMBL exon 50563009 50563110 . + . gene_id "Y_RNA^ENSG00000201501.1"; transcript_id "ENST00000364631.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.261-201"; exon_number 1; exon_id "ENSE00001807336.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201501.1"; orig_coord_info "chr20,50563009,50563110,+"; Error, chr discrepancy in gtf info for chr20 ENSEMBL exon 53544615 53544725 . + . gene_id "Y_RNA^ENSG00000206959.1"; transcript_id "ENST00000384232.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.456-201"; exon_number 1; exon_id "ENSE00001499241.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206959.1"; orig_coord_info "chr20,53544615,53544725,+"; Error, chr discrepancy in gtf info for chr20 ENSEMBL exon 57311854 57311958 . + . gene_id "Y_RNA^ENSG00000252064.1"; transcript_id "ENST00000516255.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.670-201"; exon_number 1; exon_id "ENSE00002088532.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000252064.1"; orig_coord_info "chr20,57311854,57311958,+"; Error, chr discrepancy in gtf info for chr21 ENSEMBL exon 5597390 5597490 . + . gene_id "Y_RNA^ENSG00000277777.1"; transcript_id "ENST00000610788.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.812-201"; exon_number 1; exon_id "ENSE00003748388.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000277777.1"; orig_coord_info "chr21,5597390,5597490,+"; Error, chr discrepancy in gtf info for chr21 ENSEMBL exon 6223480 6223580 . - . gene_id "Y_RNA^ENSG00000274790.1"; transcript_id "ENST00000616522.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.787-201"; exon_number 1; exon_id "ENSE00003748067.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000274790.1"; orig_coord_info "chr21,6223480,6223580,-"; Error, chr discrepancy in gtf info for chr21 ENSEMBL exon 6365955 6366055 . + . gene_id "Y_RNA^ENSG00000276902.1"; transcript_id "ENST00000615262.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.804-201"; exon_number 1; exon_id "ENSE00003749199.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000276902.1"; orig_coord_info "chr21,6365955,6366055,+"; Error, chr discrepancy in gtf info for chr21 ENSEMBL exon 7092616 7092716 . + . gene_id "Y_RNA^ENSG00000274046.1"; transcript_id "ENST00000617336.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.780-201"; exon_number 1; exon_id "ENSE00003722332.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000274046.1"; orig_coord_info "chr21,7092616,7092716,+"; Error, chr discrepancy in gtf info for chr21 ENSEMBL exon 7474394 7474494 . + . gene_id "Y_RNA^ENSG00000274484.1"; transcript_id "ENST00000613803.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.784-201"; exon_number 1; exon_id "ENSE00003725839.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000274484.1"; orig_coord_info "chr21,7474394,7474494,+"; Error, chr discrepancy in gtf info for chr21 ENSEMBL exon 7663911 7664011 . - . gene_id "Y_RNA^ENSG00000276546.1"; transcript_id "ENST00000619005.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.801-201"; exon_number 1; exon_id "ENSE00003732689.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000276546.1"; orig_coord_info "chr21,7663911,7664011,-"; Error, chr discrepancy in gtf info for chr21 ENSEMBL exon 17527140 17527247 . - . gene_id "Y_RNA^ENSG00000200754.1"; transcript_id "ENST00000363884.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.184-201"; exon_number 1; exon_id "ENSE00001808378.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200754.1"; orig_coord_info "chr21,17527140,17527247,-"; Error, chr discrepancy in gtf info for chr21 ENSEMBL exon 17576798 17576906 . + . gene_id "Y_RNA^ENSG00000199962.1"; transcript_id "ENST00000363092.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.96-201"; exon_number 1; exon_id "ENSE00001437855.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199962.1"; orig_coord_info "chr21,17576798,17576906,+"; Error, chr discrepancy in gtf info for chr21 ENSEMBL exon 23432181 23432282 . - . gene_id "Y_RNA^ENSG00000199698.1"; transcript_id "ENST00000362828.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.59-201"; exon_number 1; exon_id "ENSE00001807697.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199698.1"; orig_coord_info "chr21,23432181,23432282,-"; Error, chr discrepancy in gtf info for chr21 ENSEMBL exon 29139283 29139384 . - . gene_id "Y_RNA^ENSG00000201984.1"; transcript_id "ENST00000365114.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.314-201"; exon_number 1; exon_id "ENSE00001807733.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201984.1"; orig_coord_info "chr21,29139283,29139384,-"; Error, chr discrepancy in gtf info for chr21 ENSEMBL exon 36986739 36986851 . - . gene_id "Y_RNA^ENSG00000207416.1"; transcript_id "ENST00000384685.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.558-201"; exon_number 1; exon_id "ENSE00001499693.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207416.1"; orig_coord_info "chr21,36986739,36986851,-"; Error, chr discrepancy in gtf info for chr21 ENSEMBL exon 39344537 39344628 . + . gene_id "Y_RNA^ENSG00000252915.1"; transcript_id "ENST00000517106.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.717-201"; exon_number 1; exon_id "ENSE00002089383.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000252915.1"; orig_coord_info "chr21,39344537,39344628,+"; Error, chr discrepancy in gtf info for chr22 ENSEMBL exon 19045256 19045367 . + . gene_id "Y_RNA^ENSG00000206739.1"; transcript_id "ENST00000384012.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.415-201"; exon_number 1; exon_id "ENSE00001808012.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206739.1"; orig_coord_info "chr22,19045256,19045367,+"; Error, chr discrepancy in gtf info for chr22 ENSEMBL exon 20481158 20481268 . + . gene_id "Y_RNA^ENSG00000201916.1"; transcript_id "ENST00000365046.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.309-201"; exon_number 1; exon_id "ENSE00001439809.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000201916.1"; orig_coord_info "chr22,20481158,20481268,+"; Error, chr discrepancy in gtf info for chr22 ENSEMBL exon 28303754 28303850 . + . gene_id "Y_RNA^ENSG00000199797.1"; transcript_id "ENST00000362927.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.75-201"; exon_number 1; exon_id "ENSE00001437690.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199797.1"; orig_coord_info "chr22,28303754,28303850,+"; Error, chr discrepancy in gtf info for chr22 ENSEMBL exon 29758758 29758859 . + . gene_id "Y_RNA^ENSG00000200976.1"; transcript_id "ENST00000364106.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.203-201"; exon_number 1; exon_id "ENSE00001808918.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200976.1"; orig_coord_info "chr22,29758758,29758859,+"; Error, chr discrepancy in gtf info for chr22 ENSEMBL exon 31230071 31230172 . - . gene_id "Y_RNA^ENSG00000202019.1"; transcript_id "ENST00000365149.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.321-201"; exon_number 1; exon_id "ENSE00001807791.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000202019.1"; orig_coord_info "chr22,31230071,31230172,-"; Error, chr discrepancy in gtf info for chr22 ENSEMBL exon 36440880 36440970 . - . gene_id "Y_RNA^ENSG00000252225.1"; transcript_id "ENST00000516416.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.679-201"; exon_number 1; exon_id "ENSE00002088693.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000252225.1"; orig_coord_info "chr22,36440880,36440970,-"; Error, chr discrepancy in gtf info for chr22 ENSEMBL exon 37013225 37013319 . + . gene_id "Y_RNA^ENSG00000252412.1"; transcript_id "ENST00000516603.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.690-201"; exon_number 1; exon_id "ENSE00002088880.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000252412.1"; orig_coord_info "chr22,37013225,37013319,+"; Error, chr discrepancy in gtf info for chr22 ENSEMBL exon 41045497 41045591 . + . gene_id "Y_RNA^ENSG00000222698.1"; transcript_id "ENST00000410766.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.614-201"; exon_number 1; exon_id "ENSE00001590584.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000222698.1"; orig_coord_info "chr22,41045497,41045591,+"; Error, chr discrepancy in gtf info for chr22 ENSEMBL exon 41065554 41065646 . - . gene_id "Y_RNA^ENSG00000199515.1"; transcript_id "ENST00000362645.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.40-201"; exon_number 1; exon_id "ENSE00001808890.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199515.1"; orig_coord_info "chr22,41065554,41065646,-"; Error, chr discrepancy in gtf info for chr22 ENSEMBL exon 41648089 41648190 . - . gene_id "Y_RNA^ENSG00000200332.1"; transcript_id "ENST00000363462.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.138-201"; exon_number 1; exon_id "ENSE00001807933.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200332.1"; orig_coord_info "chr22,41648089,41648190,-"; Error, chr discrepancy in gtf info for chr22 ENSEMBL exon 41747312 41747413 . + . gene_id "Y_RNA^ENSG00000206813.1"; transcript_id "ENST00000384086.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.431-201"; exon_number 1; exon_id "ENSE00001808329.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206813.1"; orig_coord_info "chr22,41747312,41747413,+"; Error, chr discrepancy in gtf info for chr22 ENSEMBL exon 42762860 42762959 . - . gene_id "Y_RNA^ENSG00000200448.1"; transcript_id "ENST00000363578.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.152-201"; exon_number 1; exon_id "ENSE00001438341.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200448.1"; orig_coord_info "chr22,42762860,42762959,-"; Error, chr discrepancy in gtf info for chr22 ENSEMBL exon 50669804 50669901 . + . gene_id "Y_RNA^ENSG00000212569.1"; transcript_id "ENST00000391267.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.589-201"; exon_number 1; exon_id "ENSE00001809312.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000212569.1"; orig_coord_info "chr22,50669804,50669901,+"; Error, chr discrepancy in gtf info for chrX ENSEMBL exon 3641443 3641555 . - . gene_id "Y_RNA^ENSG00000207320.1"; transcript_id "ENST00000384590.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.532-201"; exon_number 1; exon_id "ENSE00001499598.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207320.1"; orig_coord_info "chrX,3641443,3641555,-"; Error, chr discrepancy in gtf info for chrX ENSEMBL exon 9874601 9874701 . - . gene_id "Y_RNA^ENSG00000206844.1"; transcript_id "ENST00000384117.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.438-201"; exon_number 1; exon_id "ENSE00001807478.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206844.1"; orig_coord_info "chrX,9874601,9874701,-"; Error, chr discrepancy in gtf info for chrX ENSEMBL exon 10061222 10061323 . + . gene_id "Y_RNA^ENSG00000202469.1"; transcript_id "ENST00000365599.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.372-201"; exon_number 1; exon_id "ENSE00001808371.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000202469.1"; orig_coord_info "chrX,10061222,10061323,+"; Error, chr discrepancy in gtf info for chrX ENSEMBL exon 11116092 11116193 . - . gene_id "Y_RNA^ENSG00000207151.1"; transcript_id "ENST00000384422.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.493-201"; exon_number 1; exon_id "ENSE00001807689.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207151.1"; orig_coord_info "chrX,11116092,11116193,-"; Error, chr discrepancy in gtf info for chrX ENSEMBL exon 12054824 12054926 . - . gene_id "Y_RNA^ENSG00000206792.1"; transcript_id "ENST00000384065.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.425-201"; exon_number 1; exon_id "ENSE00001499075.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206792.1"; orig_coord_info "chrX,12054824,12054926,-"; Error, chr discrepancy in gtf info for chrX ENSEMBL exon 12149126 12149238 . + . gene_id "Y_RNA^ENSG00000206795.1"; transcript_id "ENST00000384068.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.426-201"; exon_number 1; exon_id "ENSE00001807951.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206795.1"; orig_coord_info "chrX,12149126,12149238,+"; Error, chr discrepancy in gtf info for chrX ENSEMBL exon 16912215 16912317 . - . gene_id "Y_RNA^ENSG00000199410.1"; transcript_id "ENST00000362540.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.27-201"; exon_number 1; exon_id "ENSE00001437303.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199410.1"; orig_coord_info "chrX,16912215,16912317,-"; Error, chr discrepancy in gtf info for chrX ENSEMBL exon 18395994 18396095 . - . gene_id "Y_RNA^ENSG00000207025.1"; transcript_id "ENST00000384298.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.468-201"; exon_number 1; exon_id "ENSE00001808625.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207025.1"; orig_coord_info "chrX,18395994,18396095,-"; Error, chr discrepancy in gtf info for chrX ENSEMBL exon 19376774 19376875 . + . gene_id "Y_RNA^ENSG00000202144.1"; transcript_id "ENST00000365274.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.333-201"; exon_number 1; exon_id "ENSE00001807007.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000202144.1"; orig_coord_info "chrX,19376774,19376875,+"; Error, chr discrepancy in gtf info for chrX ENSEMBL exon 19985058 19985159 . - . gene_id "Y_RNA^ENSG00000206663.1"; transcript_id "ENST00000383936.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.393-201"; exon_number 1; exon_id "ENSE00001807513.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206663.1"; orig_coord_info "chrX,19985058,19985159,-"; Error, chr discrepancy in gtf info for chrX ENSEMBL exon 21872707 21872808 . + . gene_id "Y_RNA^ENSG00000206639.1"; transcript_id "ENST00000383912.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.385-201"; exon_number 1; exon_id "ENSE00001808631.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206639.1"; orig_coord_info "chrX,21872707,21872808,+"; Error, chr discrepancy in gtf info for chrX ENSEMBL exon 23782210 23782310 . + . gene_id "Y_RNA^ENSG00000202272.1"; transcript_id "ENST00000365402.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.347-201"; exon_number 1; exon_id "ENSE00001440165.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000202272.1"; orig_coord_info "chrX,23782210,23782310,+"; Error, chr discrepancy in gtf info for chrX ENSEMBL exon 27252119 27252235 . - . gene_id "Y_RNA^ENSG00000252486.1"; transcript_id "ENST00000516677.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.694-201"; exon_number 1; exon_id "ENSE00002088954.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000252486.1"; orig_coord_info "chrX,27252119,27252235,-"; Error, chr discrepancy in gtf info for chrX ENSEMBL exon 40492844 40492941 . + . gene_id "Y_RNA^ENSG00000206677.2"; transcript_id "ENST00000383950.2"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.397-201"; exon_number 1; exon_id "ENSE00001498960.2"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206677.2"; orig_coord_info "chrX,40492844,40492941,+"; Error, chr discrepancy in gtf info for chrX ENSEMBL exon 41316488 41316589 . + . gene_id "Y_RNA^ENSG00000238426.1"; transcript_id "ENST00000459189.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.632-201"; exon_number 1; exon_id "ENSE00001806871.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000238426.1"; orig_coord_info "chrX,41316488,41316589,+"; Error, chr discrepancy in gtf info for chrX ENSEMBL exon 44401603 44401704 . + . gene_id "Y_RNA^ENSG00000200702.1"; transcript_id "ENST00000363832.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.178-201"; exon_number 1; exon_id "ENSE00001807520.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200702.1"; orig_coord_info "chrX,44401603,44401704,+"; Error, chr discrepancy in gtf info for chrX ENSEMBL exon 50171197 50171297 . - . gene_id "Y_RNA^ENSG00000202495.1"; transcript_id "ENST00000365625.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.375-201"; exon_number 1; exon_id "ENSE00001807500.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000202495.1"; orig_coord_info "chrX,50171197,50171297,-"; Error, chr discrepancy in gtf info for chrX ENSEMBL exon 53324562 53324674 . + . gene_id "Y_RNA^ENSG00000207408.1"; transcript_id "ENST00000384677.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.556-201"; exon_number 1; exon_id "ENSE00001807455.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207408.1"; orig_coord_info "chrX,53324562,53324674,+"; Error, chr discrepancy in gtf info for chrX ENSEMBL exon 55582733 55582834 . + . gene_id "Y_RNA^ENSG00000200635.1"; transcript_id "ENST00000363765.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.172-201"; exon_number 1; exon_id "ENSE00001806983.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200635.1"; orig_coord_info "chrX,55582733,55582834,+"; Error, chr discrepancy in gtf info for chrX ENSEMBL exon 68361075 68361187 . + . gene_id "Y_RNA^ENSG00000206646.1"; transcript_id "ENST00000383919.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.388-201"; exon_number 1; exon_id "ENSE00001807031.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206646.1"; orig_coord_info "chrX,68361075,68361187,+"; Error, chr discrepancy in gtf info for chrX ENSEMBL exon 71491066 71491167 . - . gene_id "Y_RNA^ENSG00000199751.1"; transcript_id "ENST00000362881.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.68-201"; exon_number 1; exon_id "ENSE00001808000.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199751.1"; orig_coord_info "chrX,71491066,71491167,-"; Error, chr discrepancy in gtf info for chrX ENSEMBL exon 72284945 72285045 . - . gene_id "Y_RNA^ENSG00000238926.1"; transcript_id "ENST00000410980.2"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.646-201"; exon_number 1; exon_id "ENSE00001808691.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000238926.1"; orig_coord_info "chrX,72284945,72285045,-"; Error, chr discrepancy in gtf info for chrX ENSEMBL exon 86019608 86019715 . + . gene_id "Y_RNA^ENSG00000199567.1"; transcript_id "ENST00000362697.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.47-201"; exon_number 1; exon_id "ENSE00001437460.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199567.1"; orig_coord_info "chrX,86019608,86019715,+"; Error, chr discrepancy in gtf info for chrX ENSEMBL exon 94178005 94178106 . + . gene_id "Y_RNA^ENSG00000202410.1"; transcript_id "ENST00000365540.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.366-201"; exon_number 1; exon_id "ENSE00001806869.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000202410.1"; orig_coord_info "chrX,94178005,94178106,+"; Error, chr discrepancy in gtf info for chrX ENSEMBL exon 96701507 96701619 . - . gene_id "Y_RNA^ENSG00000207426.1"; transcript_id "ENST00000384695.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.562-201"; exon_number 1; exon_id "ENSE00001807328.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207426.1"; orig_coord_info "chrX,96701507,96701619,-"; Error, chr discrepancy in gtf info for chrX ENSEMBL exon 106426568 106426669 . + . gene_id "Y_RNA^ENSG00000202407.1"; transcript_id "ENST00000365537.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.365-201"; exon_number 1; exon_id "ENSE00001806996.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000202407.1"; orig_coord_info "chrX,106426568,106426669,+"; Error, chr discrepancy in gtf info for chrX ENSEMBL exon 107202577 107202683 . + . gene_id "Y_RNA^ENSG00000199832.1"; transcript_id "ENST00000362962.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.77-201"; exon_number 1; exon_id "ENSE00001437725.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199832.1"; orig_coord_info "chrX,107202577,107202683,+"; Error, chr discrepancy in gtf info for chrX ENSEMBL exon 107901145 107901246 . - . gene_id "Y_RNA^ENSG00000207363.1"; transcript_id "ENST00000384633.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.538-201"; exon_number 1; exon_id "ENSE00001807625.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207363.1"; orig_coord_info "chrX,107901145,107901246,-"; Error, chr discrepancy in gtf info for chrX ENSEMBL exon 108676951 108677057 . - . gene_id "Y_RNA^ENSG00000207146.1"; transcript_id "ENST00000384417.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.491-201"; exon_number 1; exon_id "ENSE00001499425.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000207146.1"; orig_coord_info "chrX,108676951,108677057,-"; Error, chr discrepancy in gtf info for chrX ENSEMBL exon 109744643 109744749 . - . gene_id "Y_RNA^ENSG00000252069.1"; transcript_id "ENST00000516260.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.671-201"; exon_number 1; exon_id "ENSE00002088537.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000252069.1"; orig_coord_info "chrX,109744643,109744749,-"; Error, chr discrepancy in gtf info for chrX ENSEMBL exon 112661657 112661768 . + . gene_id "Y_RNA^ENSG00000200436.1"; transcript_id "ENST00000363566.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.151-201"; exon_number 1; exon_id "ENSE00001438329.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200436.1"; orig_coord_info "chrX,112661657,112661768,+"; Error, chr discrepancy in gtf info for chrX ENSEMBL exon 115139030 115139123 . - . gene_id "Y_RNA^ENSG00000212241.1"; transcript_id "ENST00000390939.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.579-201"; exon_number 1; exon_id "ENSE00001508723.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000212241.1"; orig_coord_info "chrX,115139030,115139123,-"; Error, chr discrepancy in gtf info for chrX ENSEMBL exon 117914244 117914345 . - . gene_id "Y_RNA^ENSG00000200291.1"; transcript_id "ENST00000363421.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.132-201"; exon_number 1; exon_id "ENSE00001807696.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200291.1"; orig_coord_info "chrX,117914244,117914345,-"; Error, chr discrepancy in gtf info for chrX ENSEMBL exon 118569405 118569515 . - . gene_id "Y_RNA^ENSG00000206862.1"; transcript_id "ENST00000384135.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.443-201"; exon_number 1; exon_id "ENSE00001808642.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000206862.1"; orig_coord_info "chrX,118569405,118569515,-"; Error, chr discrepancy in gtf info for chrX ENSEMBL exon 123857062 123857163 . - . gene_id "Y_RNA^ENSG00000199705.1"; transcript_id "ENST00000362835.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.61-201"; exon_number 1; exon_id "ENSE00001808561.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199705.1"; orig_coord_info "chrX,123857062,123857163,-"; Error, chr discrepancy in gtf info for chrX ENSEMBL exon 134142228 134142340 . - . gene_id "Y_RNA^ENSG00000200572.1"; transcript_id "ENST00000363702.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.163-201"; exon_number 1; exon_id "ENSE00001807658.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000200572.1"; orig_coord_info "chrX,134142228,134142340,-"; Error, chr discrepancy in gtf info for chrX ENSEMBL exon 136571705 136571815 . - . gene_id "Y_RNA^ENSG00000199424.1"; transcript_id "ENST00000362554.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.28-201"; exon_number 1; exon_id "ENSE00001437317.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000199424.1"; orig_coord_info "chrX,136571705,136571815,-"; Error, chr discrepancy in gtf info for chrX ENSEMBL exon 136816477 136816574 . - . gene_id "Y_RNA^ENSG00000202279.1"; transcript_id "ENST00000365409.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.350-201"; exon_number 1; exon_id "ENSE00001440172.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000202279.1"; orig_coord_info "chrX,136816477,136816574,-"; Error, chr discrepancy in gtf info for chrY ENSEMBL exon 7341531 7341642 . + . gene_id "Y_RNA^ENSG00000251996.1"; transcript_id "ENST00000516187.1"; gene_type "misc_RNA"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_name "Y_RNA.666-201"; exon_number 1; exon_id "ENSE00002088464.1"; level 3; transcript_support_level "NA"; tag "basic"; FI_gene_label "Y_RNA^ENSG00000251996.1"; orig_coord_info "chrY,7341531,7341642,+"; Error - no gene spans 100M bases in length.... likely problem at /usr/local/src/STAR-Fusion/FusionInspector/util/fusion_pair_to_mini_genome_join.pl line 589. main::get_gene_span_info("chr1\x{9}ENSEMBL\x{9}exon\x{9}7982881\x{9}7982983\x{9}.\x{9}-\x{9}.\x{9}gene_id \"Y_RNA^ENSG00"...) called at /usr/local/src/STAR-Fusion/FusionInspector/util/fusion_pair_to_mini_genome_join.pl line 417 main::get_gene_contig_gtf("chr1\x{9}ENSEMBL\x{9}exon\x{9}7982881\x{9}7982983\x{9}.\x{9}-\x{9}.\x{9}gene_id \"Y_RNA^ENSG00"..., "/tmp/nxf.RoPOUI5bJu/ctat_genome_lib_build_dir/ref_genome.fa") called at /usr/local/src/STAR-Fusion/FusionInspector/util/fusion_pair_to_mini_genome_join.pl line 214 eval {...} called at /usr/local/src/STAR-Fusion/FusionInspector/util/fusion_pair_to_mini_genome_join.pl line 210 Done. Execution Time = 0.13 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/fusion_pair_to_mini_genome_join.pl --fusions tih_rna_sample_00676_B23MVV7LT4_1.fusionreport.tsv --gtf /tmp/nxf.RoPOUI5bJu/ctat_genome_lib_build_dir/ref_annot.gtf --genome_fa /tmp/nxf.RoPOUI5bJu/ctat_genome_lib_build_dir/ref_genome.fa --out_prefix /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1 --shrink_introns --max_intron_length 1000 Running: touch /tmp/nxf.RoPOUI5bJu/chckpts_dir/fusion_contigs.ok Running: cp /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.fa /tmp/nxf.RoPOUI5bJu/fi_workdir/tih_rna_sample_00676_B23MVV7LT4_1.fa Execution Time = 0.00 minutes. CMD: cp /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.fa /tmp/nxf.RoPOUI5bJu/fi_workdir/tih_rna_sample_00676_B23MVV7LT4_1.fa Running: touch /tmp/nxf.RoPOUI5bJu/chckpts_dir/cp_contigs_file_workdir Running: cp /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.gtf /tmp/nxf.RoPOUI5bJu/fi_workdir/tih_rna_sample_00676_B23MVV7LT4_1.gtf Execution Time = 0.00 minutes. CMD: cp /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.gtf /tmp/nxf.RoPOUI5bJu/fi_workdir/tih_rna_sample_00676_B23MVV7LT4_1.gtf Running: touch /tmp/nxf.RoPOUI5bJu/chckpts_dir/cp_gtf_file_workdir.ok Running: /usr/local/src/STAR-Fusion/FusionInspector/util/fasta_and_gtf_to_cytoband.pl /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.fa /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.gtf > /tmp/nxf.RoPOUI5bJu/cytoBand.txt Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/fasta_and_gtf_to_cytoband.pl /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.fa /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.gtf > /tmp/nxf.RoPOUI5bJu/cytoBand.txt Running: touch /tmp/nxf.RoPOUI5bJu/chckpts_dir/cytoband.ok Running: /usr/local/src/STAR-Fusion/FusionInspector/util/gtf_gene_to_bed.pl /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.gtf > /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.bed -parsing GTF file: /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.gtf Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/gtf_gene_to_bed.pl /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.gtf > /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.bed Running: touch /tmp/nxf.RoPOUI5bJu/chckpts_dir/merged_contig_gtf_to_bed.ok Running: sort -k1,1 -k2,2n /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.bed > /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.bed.sorted.bed Execution Time = 0.00 minutes. CMD: sort -k1,1 -k2,2n /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.bed > /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.bed.sorted.bed Running: touch /tmp/nxf.RoPOUI5bJu/chckpts_dir/tih_rna_sample_00676_B23MVV7LT4_1.bed.bedsort.ok Running: bgzip -f /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.bed.sorted.bed Execution Time = 0.00 minutes. CMD: bgzip -f /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.bed.sorted.bed Running: touch /tmp/nxf.RoPOUI5bJu/chckpts_dir/tih_rna_sample_00676_B23MVV7LT4_1.bed.bgzip.ok Running: tabix -p bed /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.bed.sorted.bed.gz Execution Time = 0.00 minutes. CMD: tabix -p bed /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.bed.sorted.bed.gz Running: touch /tmp/nxf.RoPOUI5bJu/chckpts_dir/tih_rna_sample_00676_B23MVV7LT4_1.bed.tabix.ok Running: samtools faidx /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.fa Execution Time = 0.00 minutes. CMD: samtools faidx /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.fa Running: touch /tmp/nxf.RoPOUI5bJu/chckpts_dir/merged_contig_fai.ok Running: /usr/local/src/STAR-Fusion/FusionInspector/util/run_FI_STAR.pl --genome /tmp/nxf.RoPOUI5bJu/ctat_genome_lib_build_dir/ref_genome.fa --patch /tmp/nxf.RoPOUI5bJu/fi_workdir/tih_rna_sample_00676_B23MVV7LT4_1.fa --max_mate_dist 100000 -G /tmp/nxf.RoPOUI5bJu/fi_workdir/tih_rna_sample_00676_B23MVV7LT4_1.gtf --CPU 8 --out_prefix tih_rna_sample_00676_B23MVV7LT4_1.star --out_dir /tmp/nxf.RoPOUI5bJu/fi_workdir --reads "/tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1_1.fastp.fastq.gz /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1_2.fastp.fastq.gz" * Running CMD: /usr/local/bin/STAR --runThreadN 8 --genomeDir /tmp/nxf.RoPOUI5bJu/ctat_genome_lib_build_dir/ref_genome.fa.star.idx --outSAMtype BAM SortedByCoordinate --twopassMode None --alignSJDBoverhangMin 10 --genomeSuffixLengthMax 10000 --limitBAMsortRAM 47271261705 --alignInsertionFlush Right --alignMatesGapMax 100000 --alignIntronMax 100000 --outSAMattributes All --readFilesIn /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1_1.fastp.fastq.gz /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1_2.fastp.fastq.gz --genomeFastaFiles /tmp/nxf.RoPOUI5bJu/fi_workdir/tih_rna_sample_00676_B23MVV7LT4_1.fa --outSAMfilter KeepAllAddedReferences --sjdbGTFfile /tmp/nxf.RoPOUI5bJu/fi_workdir/tih_rna_sample_00676_B23MVV7LT4_1.gtf --alignSJstitchMismatchNmax 5 -1 5 5 --scoreGapNoncan -6 --readFilesCommand 'gunzip -c' Jun 08 10:28:32 ..... started STAR run Jun 08 10:28:32 ..... loading genome Jun 08 10:30:17 ... generating Suffix Array index Jun 08 10:34:14 ... completed Suffix Array index Jun 08 10:34:14 ..... processing annotations GTF Jun 08 10:34:14 ..... inserting junctions into the genome indices Jun 08 10:35:16 ..... started mapping Jun 08 12:03:14 ..... finished mapping Jun 08 12:03:15 ..... started sorting BAM Jun 08 12:03:17 ..... finished successfully * Running CMD: mv Aligned.sortedByCoord.out.bam tih_rna_sample_00676_B23MVV7LT4_1.star.sortedByCoord.out.bam * Running CMD: samtools index tih_rna_sample_00676_B23MVV7LT4_1.star.sortedByCoord.out.bam Execution Time = 94.80 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/run_FI_STAR.pl --genome /tmp/nxf.RoPOUI5bJu/ctat_genome_lib_build_dir/ref_genome.fa --patch /tmp/nxf.RoPOUI5bJu/fi_workdir/tih_rna_sample_00676_B23MVV7LT4_1.fa --max_mate_dist 100000 -G /tmp/nxf.RoPOUI5bJu/fi_workdir/tih_rna_sample_00676_B23MVV7LT4_1.gtf --CPU 8 --out_prefix tih_rna_sample_00676_B23MVV7LT4_1.star --out_dir /tmp/nxf.RoPOUI5bJu/fi_workdir --reads "/tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1_1.fastp.fastq.gz /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1_2.fastp.fastq.gz" Running: touch /tmp/nxf.RoPOUI5bJu/chckpts_dir/run_STAR.ok Running: /usr/local/src/STAR-Fusion/FusionInspector/util/bam_mark_duplicates.py -i /tmp/nxf.RoPOUI5bJu/fi_workdir/tih_rna_sample_00676_B23MVV7LT4_1.star.sortedByCoord.out.bam -o /tmp/nxf.RoPOUI5bJu/fi_workdir/tih_rna_sample_00676_B23MVV7LT4_1.star.cSorted.dupsMarked.bam --remove_dups 12:03:39 : INFO : Done. Execution Time = 0.30 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/bam_mark_duplicates.py -i /tmp/nxf.RoPOUI5bJu/fi_workdir/tih_rna_sample_00676_B23MVV7LT4_1.star.sortedByCoord.out.bam -o /tmp/nxf.RoPOUI5bJu/fi_workdir/tih_rna_sample_00676_B23MVV7LT4_1.star.cSorted.dupsMarked.bam --remove_dups Running: touch /tmp/nxf.RoPOUI5bJu/chckpts_dir/mark_dup_reads.ok Running: samtools index /tmp/nxf.RoPOUI5bJu/fi_workdir/tih_rna_sample_00676_B23MVV7LT4_1.star.cSorted.dupsMarked.bam Execution Time = 0.04 minutes. CMD: samtools index /tmp/nxf.RoPOUI5bJu/fi_workdir/tih_rna_sample_00676_B23MVV7LT4_1.star.cSorted.dupsMarked.bam Running: touch /tmp/nxf.RoPOUI5bJu/chckpts_dir/mark_dups_reads.index.ok Running: /usr/local/src/STAR-Fusion/FusionInspector/util/get_fusion_JUNCTION_reads_from_fusion_contig_bam.pl --gtf_file /tmp/nxf.RoPOUI5bJu/fi_workdir/tih_rna_sample_00676_B23MVV7LT4_1.gtf --MIN_ALIGN_PER_ID 96 --bam /tmp/nxf.RoPOUI5bJu/fi_workdir/tih_rna_sample_00676_B23MVV7LT4_1.star.cSorted.dupsMarked.bam --genome_lib_dir ctat_genome_lib_build_dir > /tmp/nxf.RoPOUI5bJu/fi_workdir/tih_rna_sample_00676_B23MVV7LT4_1.star.cSorted.dupsMarked.bam.fusion_junc_reads.sam -parsing GTF file: /tmp/nxf.RoPOUI5bJu/fi_workdir/tih_rna_sample_00676_B23MVV7LT4_1.gtf -parsing /tmp/nxf.RoPOUI5bJu/fi_workdir/tih_rna_sample_00676_B23MVV7LT4_1.star.cSorted.dupsMarked.bam [10000] [20000] [30000] [40000] [50000] [60000] [70000] [80000] [90000] [100000] [110000] [120000] [130000] [140000] [150000] [160000] [170000] [180000] [190000] [200000] [210000] [220000] [230000] [240000] [250000] [260000] [270000] [280000] [290000] [300000] [310000] [320000] [330000] [340000] [350000] [360000] [370000] [380000] [390000] [400000] [410000] [420000] [430000] [440000] [450000] [460000] [470000] [480000] [490000] [500000] [510000] [520000] [530000] [540000] [550000] [560000] [570000] [580000] [590000] [600000] [610000] [620000] [630000] [640000] [650000] [660000] [670000] [680000] [690000] [700000] [710000] [720000] [730000] [740000] [750000] [760000] [770000] [780000] [790000] [800000] [810000] [820000] [830000] [840000] [850000] [860000] [870000] [880000] [890000] [900000] [910000] [920000] [930000] [940000] [950000] [960000] [970000] [980000] [990000] [1000000] [1010000] [1020000] [1030000] [1040000] [1050000] [1060000] [1070000] [1080000] [1090000] [1100000] [1110000] [1120000] [1130000] [1140000] [1150000] [1160000] [1170000] [1180000] [1190000] [1200000] [1210000] [1220000] [1230000] [1240000] [1250000] [1260000] [1270000] [1280000] [1290000] [1300000] [1310000] [1320000] [1330000] [1340000] [1350000] [1360000] [1370000] [1380000] [1390000] [1400000] [1410000] [1420000] [1430000] [1440000] [1450000] [1460000] [1470000] [1480000] [1490000] [1500000] [1510000] [1520000] [1530000] [1540000] [1550000] [1560000] [1570000] [1580000] [1590000] [1600000] [1610000] [1620000] [1630000] [1640000] [1650000] [1660000] [1670000] [1680000] [1690000] [1700000] [1710000] [1720000] [1730000] [1740000] [1750000] [1760000] [1770000] [1780000] [1790000] [1800000] [1810000] [1820000] [1830000] [1840000] [1850000] [1860000] [1870000] [1880000] [1890000] [1900000] [1910000] [1920000] [1930000] [1940000] [1950000] [1960000] [1970000] [1980000] [1990000] [2000000] [2010000] [2020000] [2030000] [2040000] [2050000] [2060000] [2070000] [2080000] [2090000] [2100000] [2110000] [2120000] [2130000] [2140000] [2150000] [2160000] [2170000] [2180000] [2190000] [2200000] [2210000] [2220000] [2230000] [2240000] [2250000] [2260000] [2270000] [2280000] [2290000] [2300000] [2310000] [2320000] [2330000] [2340000] [2350000] [2360000] [2370000] [2380000] [2390000] [2400000] [2410000] [2420000] [2430000] [2440000] [2450000] [2460000] [2470000] [2480000] [2490000] [2500000] [2510000] [2520000] [2530000] [2540000] [2550000] [2560000] [2570000] [2580000] [2590000] [2600000] [2610000] [2620000] [2630000] [2640000] [2650000] [2660000] [2670000] [2680000] [2690000] [2700000] [2710000] [2720000] [2730000] [2740000] [2750000] [2760000] [2770000] [2780000] [2790000] [2800000] [2810000] [2820000] [2830000] [2840000] [2850000] [2860000] [2870000] [2880000] [2890000] [2900000] [2910000] [2920000] [2930000] [2940000] [2950000] [2960000] [2970000] [2980000] [2990000] [3000000] [3010000] [3020000] [3030000] [3040000] [3050000] [3060000] [3070000] [3080000] [3090000] [3100000] [3110000] [3120000] [3130000] [3140000] [3150000] [3160000] [3170000] [3180000] [3190000] [3200000] [3210000] [3220000] [3230000] [3240000] [3250000] [3260000] [3270000] [3280000] [3290000] [3300000] [3310000] [3320000] [3330000] [3340000] [3350000] [3360000] [3370000] -done parsing /tmp/nxf.RoPOUI5bJu/fi_workdir/tih_rna_sample_00676_B23MVV7LT4_1.star.cSorted.dupsMarked.bam. Extracting junction info. junction read elimination tally: $VAR1 = { ' ** passed ** ' => 17239, 'num_hits: 3 != num_counted_on_fusion_contigs 1 ' => 98, 'num_hits: 6 != num_counted_on_fusion_contigs 4 ' => 76, 'num_hits: 8 != num_counted_on_fusion_contigs 4 ' => 8, 'num_hits: 3 != num_counted_on_fusion_contigs 2 ' => 104, 'excessive soft clipping' => 27966, 'num_hits: 6 != num_counted_on_fusion_contigs 2 ' => 32, 'small anchor length' => 51, 'num_hits: 5 != num_counted_on_fusion_contigs 4 ' => 4, 'per_id < 96' => 12942, 'num_hits: 4 != num_counted_on_fusion_contigs 2 ' => 750, 'exons hit < 2' => 2, 'num_hits: 2 != num_counted_on_fusion_contigs 1 ' => 287, 'num genes matched < 2' => 159, 'low complexity anchor region' => 6, 'num_hits: 5 != num_counted_on_fusion_contigs 3 ' => 3, 'num_hits: 6 != num_counted_on_fusion_contigs 3 ' => 138 }; -writing fusion junction support info. Execution Time = 1.87 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/get_fusion_JUNCTION_reads_from_fusion_contig_bam.pl --gtf_file /tmp/nxf.RoPOUI5bJu/fi_workdir/tih_rna_sample_00676_B23MVV7LT4_1.gtf --MIN_ALIGN_PER_ID 96 --bam /tmp/nxf.RoPOUI5bJu/fi_workdir/tih_rna_sample_00676_B23MVV7LT4_1.star.cSorted.dupsMarked.bam --genome_lib_dir ctat_genome_lib_build_dir > /tmp/nxf.RoPOUI5bJu/fi_workdir/tih_rna_sample_00676_B23MVV7LT4_1.star.cSorted.dupsMarked.bam.fusion_junc_reads.sam Running: touch /tmp/nxf.RoPOUI5bJu/chckpts_dir/get_fusion_JUNCTION_reads_from_bam.ok Running: /usr/local/src/STAR-Fusion/FusionInspector/util/get_fusion_SPANNING_reads_from_bam.from_chim_summary.pl --gtf_file /tmp/nxf.RoPOUI5bJu/fi_workdir/tih_rna_sample_00676_B23MVV7LT4_1.gtf --MIN_ALIGN_PER_ID 96 --bam /tmp/nxf.RoPOUI5bJu/fi_workdir/tih_rna_sample_00676_B23MVV7LT4_1.star.cSorted.dupsMarked.bam --junction_info /tmp/nxf.RoPOUI5bJu/fi_workdir/tih_rna_sample_00676_B23MVV7LT4_1.star.cSorted.dupsMarked.bam.fusion_junction_info --genome_lib_dir ctat_genome_lib_build_dir > /tmp/nxf.RoPOUI5bJu/fi_workdir/tih_rna_sample_00676_B23MVV7LT4_1.star.cSorted.dupsMarked.bam.fusion_span_reads.sam -outputting the spanning read info: /tmp/nxf.RoPOUI5bJu/fi_workdir/tih_rna_sample_00676_B23MVV7LT4_1.star.cSorted.dupsMarked.bam.fusion_spanning_info. - counting read alignments among fusion contigs. [1000] -fusion SPANNING read extraction for scaff: AC015911.9--SLFN12L [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] -fusion SPANNING read extraction for scaff: AL512590.2--CCDC180 [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] [28000] [29000] [30000] [31000] [32000] [33000] [34000] [35000] [36000] [37000] [38000] [39000] [40000] [41000] [42000] [43000] [44000] [45000] [46000] [47000] [48000] [49000] [50000] [51000] [52000] [53000] [54000] [55000] [56000] [57000] [58000] [59000] [60000] [61000] [62000] [63000] [64000] [65000] [66000] [67000] [68000] [69000] [70000] [71000] [72000] [73000] [74000] [75000] [76000] [77000] [78000] [79000] [80000] [81000] [82000] [83000] [84000] [85000] [86000] [87000] [88000] [89000] [90000] [91000] [92000] [93000] [94000] [95000] [96000] [97000] [98000] [99000] [100000] [101000] [102000] [103000] [104000] [105000] [106000] [107000] [108000] [109000] [110000] [111000] [112000] [113000] [114000] [115000] [116000] [117000] [118000] [119000] [120000] [121000] [122000] [123000] [124000] [125000] [126000] [127000] [128000] [129000] [130000] [131000] [132000] [133000] [134000] [135000] [136000] [137000] [138000] [139000] [140000] [141000] [142000] -fusion SPANNING read extraction for scaff: CASZ1--SLC47A2 [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] -fusion SPANNING read extraction for scaff: CLSTN2--LINC01374 [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] -fusion SPANNING read extraction for scaff: CLSTN2--LINC02653 [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] 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[141000] [142000] [143000] [144000] [145000] [146000] [147000] [148000] [149000] [150000] [151000] [152000] [153000] [154000] [155000] [156000] [157000] [158000] [159000] [160000] [161000] [162000] [163000] [164000] [165000] [166000] [167000] [168000] [169000] [170000] [171000] [172000] [173000] [174000] [175000] [176000] [177000] [178000] [179000] [180000] [181000] [182000] [183000] [184000] [185000] [186000] [187000] [188000] [189000] [190000] [191000] [192000] [193000] [194000] [195000] [196000] [197000] [198000] [199000] [200000] [201000] [202000] [203000] [204000] [205000] [206000] [207000] [208000] [209000] [210000] [211000] [212000] [213000] [214000] [215000] [216000] [217000] [218000] [219000] [220000] [221000] [222000] [223000] -fusion SPANNING read extraction for scaff: CPT1A--SNX32 [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] 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[30000] [31000] [32000] [33000] [34000] [35000] [36000] [37000] [38000] [39000] [40000] [41000] [42000] [43000] [44000] [45000] [46000] [47000] [48000] [49000] [50000] [51000] [52000] [53000] [54000] [55000] [56000] [57000] [58000] [59000] [60000] [61000] [62000] [63000] [64000] [65000] [66000] [67000] [68000] [69000] [70000] [71000] [72000] [73000] [74000] [75000] [76000] [77000] [78000] [79000] [80000] [81000] [82000] [83000] [84000] [85000] [86000] [87000] [88000] [89000] [90000] [91000] [92000] [93000] [94000] [95000] [96000] [97000] [98000] [99000] [100000] [101000] [102000] -fusion SPANNING read extraction for scaff: GREB1--BCL11A [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] [28000] [29000] [30000] [31000] [32000] [33000] [34000] [35000] [36000] [37000] [38000] [39000] [40000] [41000] [42000] [43000] [44000] [45000] [46000] [47000] [48000] [49000] [50000] [51000] [52000] [53000] [54000] [55000] [56000] [57000] [58000] [59000] [60000] [61000] [62000] [63000] [64000] [65000] [66000] [67000] [68000] [69000] [70000] [71000] [72000] [73000] [74000] [75000] [76000] [77000] [78000] [79000] [80000] [81000] [82000] [83000] [84000] [85000] [86000] [87000] [88000] [89000] [90000] [91000] [92000] [93000] [94000] [95000] [96000] [97000] [98000] [99000] [100000] [101000] [102000] -fusion SPANNING read extraction for scaff: GREB1--RN7SL361P [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] [28000] [29000] [30000] [31000] [32000] [33000] [34000] [35000] [36000] [37000] [38000] [39000] [40000] [41000] [42000] [43000] [44000] [45000] [46000] [47000] [48000] [49000] [50000] [51000] [52000] [53000] [54000] [55000] [56000] [57000] [58000] [59000] [60000] [61000] [62000] [63000] [64000] [65000] [66000] [67000] [68000] [69000] [70000] [71000] [72000] [73000] [74000] [75000] [76000] [77000] [78000] [79000] [80000] [81000] [82000] [83000] [84000] [85000] [86000] [87000] [88000] -fusion SPANNING read extraction for scaff: HNRNPR--LINC00861 [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] -fusion SPANNING read extraction for scaff: INPP5K--RPS15AP38 [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] [28000] [29000] [30000] [31000] [32000] [33000] [34000] [35000] [36000] [37000] [38000] [39000] [40000] [41000] [42000] [43000] [44000] [45000] [46000] [47000] [48000] [49000] [50000] [51000] [52000] [53000] [54000] [55000] [56000] [57000] [58000] [59000] [60000] -fusion SPANNING read extraction for scaff: KCNAB2--CAMTA1 [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] [28000] [29000] [30000] [31000] [32000] [33000] [34000] [35000] [36000] [37000] [38000] [39000] [40000] [41000] [42000] [43000] [44000] [45000] [46000] [47000] [48000] [49000] [50000] [51000] [52000] [53000] [54000] [55000] [56000] [57000] [58000] [59000] [60000] [61000] [62000] [63000] [64000] [65000] [66000] [67000] [68000] [69000] [70000] [71000] [72000] [73000] [74000] [75000] [76000] [77000] [78000] [79000] [80000] [81000] [82000] [83000] [84000] [85000] [86000] [87000] [88000] [89000] [90000] [91000] [92000] [93000] [94000] [95000] [96000] [97000] [98000] [99000] [100000] [101000] [102000] [103000] [104000] [105000] [106000] [107000] [108000] [109000] [110000] [111000] [112000] [113000] [114000] [115000] [116000] [117000] [118000] [119000] [120000] [121000] [122000] [123000] [124000] [125000] [126000] -fusion SPANNING read extraction for scaff: LENG8--ENPEP [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] [28000] [29000] [30000] [31000] [32000] [33000] [34000] [35000] [36000] [37000] [38000] [39000] [40000] [41000] [42000] [43000] [44000] [45000] [46000] [47000] [48000] [49000] [50000] [51000] [52000] [53000] [54000] [55000] [56000] [57000] [58000] [59000] [60000] [61000] [62000] [63000] [64000] [65000] [66000] [67000] [68000] [69000] [70000] [71000] [72000] [73000] [74000] [75000] [76000] [77000] [78000] [79000] [80000] [81000] [82000] [83000] [84000] [85000] [86000] [87000] [88000] [89000] [90000] [91000] [92000] [93000] [94000] [95000] [96000] [97000] [98000] [99000] [100000] [101000] [102000] [103000] [104000] [105000] [106000] [107000] [108000] [109000] [110000] [111000] [112000] [113000] [114000] [115000] [116000] [117000] [118000] [119000] [120000] [121000] 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[344000] [345000] [346000] [347000] [348000] [349000] [350000] [351000] [352000] [353000] [354000] [355000] [356000] [357000] [358000] [359000] [360000] [361000] [362000] [363000] [364000] [365000] [366000] [367000] [368000] [369000] [370000] [371000] [372000] [373000] [374000] [375000] [376000] [377000] [378000] [379000] [380000] [381000] [382000] [383000] [384000] [385000] [386000] [387000] [388000] [389000] [390000] [391000] [392000] [393000] [394000] [395000] [396000] [397000] [398000] [399000] [400000] [401000] [402000] [403000] [404000] [405000] [406000] [407000] [408000] [409000] [410000] [411000] [412000] [413000] [414000] [415000] [416000] [417000] [418000] [419000] [420000] [421000] [422000] [423000] [424000] [425000] [426000] [427000] [428000] [429000] [430000] [431000] [432000] [433000] [434000] [435000] [436000] [437000] [438000] [439000] [440000] [441000] [442000] [443000] [444000] [445000] [446000] [447000] [448000] [449000] [450000] [451000] [452000] [453000] [454000] [455000] [456000] [457000] [458000] [459000] [460000] [461000] [462000] [463000] [464000] [465000] [466000] [467000] [468000] [469000] [470000] [471000] [472000] [473000] [474000] [475000] [476000] [477000] [478000] [479000] [480000] [481000] [482000] -fusion SPANNING read extraction for scaff: LINC01639--MPPED1 [1000] [2000] [3000] [4000] [5000] [6000] -fusion SPANNING read extraction for scaff: MB21D2--ARMC10P1 [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] -fusion SPANNING read extraction for scaff: MB21D2--NSUN3 [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] -fusion SPANNING read extraction for scaff: MRPS23--MAILR [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] -fusion SPANNING read extraction for scaff: PAG1--NRG1 [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] -fusion SPANNING read extraction for scaff: PRSS27--TPSB2 [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] -fusion SPANNING read extraction for scaff: PTBP2--AC093426.1 [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] -fusion SPANNING read extraction for scaff: PTBP2--CHRM3 [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] [28000] [29000] [30000] [31000] [32000] [33000] [34000] [35000] [36000] [37000] [38000] [39000] [40000] [41000] [42000] [43000] [44000] [45000] [46000] [47000] [48000] [49000] [50000] [51000] [52000] [53000] [54000] [55000] [56000] [57000] [58000] [59000] [60000] [61000] [62000] [63000] [64000] [65000] [66000] [67000] [68000] [69000] [70000] [71000] [72000] [73000] [74000] [75000] [76000] [77000] [78000] [79000] [80000] [81000] [82000] [83000] [84000] [85000] [86000] [87000] [88000] [89000] [90000] [91000] [92000] [93000] [94000] [95000] [96000] [97000] [98000] [99000] [100000] [101000] [102000] [103000] [104000] [105000] [106000] [107000] [108000] [109000] [110000] [111000] [112000] [113000] [114000] [115000] [116000] [117000] [118000] [119000] [120000] [121000] [122000] [123000] [124000] [125000] [126000] [127000] [128000] [129000] [130000] [131000] [132000] [133000] [134000] [135000] [136000] [137000] [138000] [139000] [140000] [141000] [142000] [143000] [144000] [145000] [146000] -fusion SPANNING read extraction for scaff: RBM14--RBM4 [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] [28000] [29000] [30000] [31000] [32000] [33000] [34000] [35000] [36000] [37000] [38000] [39000] [40000] [41000] [42000] [43000] [44000] [45000] [46000] [47000] [48000] [49000] [50000] [51000] [52000] [53000] [54000] [55000] [56000] [57000] [58000] [59000] [60000] [61000] [62000] [63000] [64000] [65000] [66000] [67000] [68000] [69000] [70000] [71000] [72000] [73000] [74000] [75000] [76000] [77000] [78000] [79000] [80000] [81000] [82000] [83000] [84000] [85000] [86000] [87000] [88000] [89000] [90000] [91000] [92000] [93000] [94000] [95000] [96000] [97000] [98000] [99000] [100000] [101000] [102000] [103000] [104000] [105000] [106000] [107000] [108000] -fusion SPANNING read extraction for scaff: RBPMS--KCNU1 [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] -fusion SPANNING read extraction for scaff: STAG2--CXorf51A [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] -fusion SPANNING read extraction for scaff: STAG2--Z99497.1 [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] -fusion SPANNING read extraction for scaff: STAG2--EEF1A1P11 [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] -fusion SPANNING read extraction for scaff: STAG2--RN7SL831P [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] [28000] [29000] [30000] [31000] [32000] [33000] [34000] [35000] [36000] [37000] [38000] [39000] [40000] [41000] [42000] [43000] [44000] [45000] [46000] [47000] [48000] [49000] [50000] [51000] [52000] [53000] [54000] [55000] [56000] [57000] [58000] [59000] [60000] [61000] [62000] [63000] [64000] [65000] [66000] [67000] -fusion SPANNING read extraction for scaff: STX16--NPEPL1 [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] [28000] [29000] [30000] [31000] [32000] [33000] [34000] [35000] [36000] [37000] [38000] [39000] [40000] [41000] [42000] [43000] [44000] [45000] [46000] [47000] [48000] [49000] [50000] [51000] [52000] [53000] [54000] [55000] [56000] [57000] [58000] [59000] [60000] [61000] [62000] [63000] [64000] [65000] [66000] [67000] [68000] [69000] [70000] [71000] [72000] [73000] [74000] [75000] [76000] [77000] [78000] [79000] [80000] [81000] [82000] [83000] [84000] [85000] [86000] [87000] [88000] [89000] [90000] [91000] [92000] [93000] [94000] [95000] [96000] [97000] [98000] [99000] [100000] [101000] [102000] [103000] [104000] [105000] [106000] [107000] [108000] [109000] [110000] [111000] [112000] [113000] [114000] [115000] [116000] [117000] [118000] [119000] [120000] [121000] [122000] [123000] [124000] [125000] [126000] [127000] [128000] [129000] [130000] [131000] [132000] [133000] [134000] [135000] [136000] [137000] [138000] [139000] [140000] [141000] [142000] [143000] [144000] [145000] [146000] [147000] [148000] [149000] [150000] [151000] [152000] [153000] [154000] [155000] [156000] [157000] [158000] [159000] [160000] [161000] [162000] [163000] [164000] [165000] [166000] [167000] [168000] [169000] [170000] [171000] [172000] [173000] [174000] [175000] [176000] [177000] [178000] -fusion SPANNING read extraction for scaff: THADA--INPP5K [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] [28000] [29000] [30000] [31000] [32000] [33000] [34000] [35000] [36000] [37000] [38000] [39000] [40000] [41000] [42000] [43000] [44000] [45000] [46000] -fusion SPANNING read extraction for scaff: TLK2--AC240565.1 [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] [28000] [29000] [30000] [31000] [32000] [33000] [34000] [35000] [36000] [37000] [38000] [39000] [40000] [41000] [42000] [43000] [44000] [45000] [46000] [47000] -fusion SPANNING read extraction for scaff: TLK2--FAM157A [1000] [2000] [3000] [4000] [5000] [6000] [7000] -fusion SPANNING read extraction for scaff: TLK2P1--AC110079.1 [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] [28000] [29000] [30000] [31000] [32000] [33000] [34000] [35000] [36000] [37000] [38000] [39000] [40000] [41000] [42000] [43000] [44000] [45000] [46000] [47000] [48000] [49000] [50000] [51000] [52000] [53000] [54000] [55000] [56000] [57000] [58000] [59000] [60000] [61000] [62000] [63000] [64000] [65000] [66000] [67000] [68000] [69000] [70000] [71000] [72000] [73000] [74000] [75000] [76000] [77000] [78000] [79000] [80000] [81000] [82000] [83000] [84000] [85000] [86000] [87000] [88000] [89000] [90000] [91000] [92000] [93000] [94000] [95000] -fusion SPANNING read extraction for scaff: TRAPPC9--AC100807.2 [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] [28000] [29000] [30000] [31000] [32000] [33000] [34000] [35000] [36000] [37000] [38000] [39000] [40000] [41000] [42000] [43000] [44000] [45000] [46000] [47000] [48000] [49000] [50000] [51000] [52000] [53000] [54000] [55000] [56000] [57000] [58000] [59000] [60000] [61000] [62000] [63000] [64000] [65000] [66000] [67000] [68000] [69000] [70000] [71000] [72000] [73000] [74000] [75000] [76000] [77000] [78000] [79000] [80000] [81000] [82000] [83000] [84000] [85000] [86000] [87000] [88000] [89000] [90000] [91000] [92000] [93000] [94000] [95000] -fusion SPANNING read extraction for scaff: TRAPPC9--AC087354.1 [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] -fusion SPANNING read extraction for scaff: TVP23C--CDRT4 [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] [28000] [29000] [30000] [31000] [32000] [33000] [34000] [35000] [36000] [37000] [38000] [39000] [40000] [41000] [42000] [43000] [44000] [45000] [46000] [47000] [48000] [49000] [50000] [51000] [52000] [53000] [54000] [55000] [56000] [57000] [58000] [59000] [60000] [61000] [62000] [63000] [64000] [65000] [66000] [67000] [68000] [69000] [70000] [71000] [72000] [73000] [74000] [75000] [76000] [77000] [78000] [79000] [80000] [81000] [82000] [83000] [84000] [85000] [86000] [87000] [88000] [89000] [90000] [91000] [92000] [93000] [94000] [95000] [96000] [97000] [98000] [99000] [100000] [101000] [102000] [103000] [104000] [105000] [106000] [107000] [108000] [109000] [110000] [111000] [112000] [113000] [114000] [115000] [116000] [117000] [118000] [119000] [120000] [121000] [122000] [123000] [124000] [125000] [126000] [127000] [128000] [129000] [130000] [131000] [132000] [133000] [134000] [135000] [136000] [137000] [138000] [139000] [140000] [141000] [142000] [143000] [144000] [145000] [146000] [147000] [148000] [149000] [150000] [151000] [152000] [153000] [154000] [155000] [156000] [157000] [158000] [159000] [160000] [161000] [162000] [163000] [164000] [165000] [166000] [167000] [168000] [169000] [170000] [171000] [172000] -fusion SPANNING read extraction for scaff: WAC--AC092422.1 [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] [28000] [29000] [30000] [31000] [32000] [33000] [34000] [35000] [36000] [37000] [38000] [39000] [40000] [41000] [42000] [43000] [44000] [45000] [46000] [47000] [48000] [49000] [50000] [51000] [52000] [53000] [54000] [55000] [56000] [57000] [58000] [59000] [60000] [61000] [62000] [63000] [64000] [65000] [66000] [67000] [68000] [69000] [70000] [71000] [72000] [73000] [74000] [75000] [76000] [77000] [78000] [79000] [80000] [81000] [82000] [83000] [84000] [85000] [86000] [87000] [88000] [89000] [90000] [91000] [92000] [93000] [94000] [95000] [96000] [97000] [98000] [99000] [100000] [101000] [102000] [103000] [104000] [105000] [106000] [107000] [108000] [109000] [110000] [111000] [112000] [113000] [114000] [115000] [116000] [117000] [118000] [119000] [120000] [121000] [122000] [123000] [124000] [125000] [126000] [127000] [128000] [129000] [130000] [131000] [132000] [133000] [134000] [135000] [136000] [137000] [138000] [139000] [140000] [141000] [142000] [143000] [144000] [145000] [146000] [147000] [148000] [149000] [150000] [151000] [152000] [153000] [154000] [155000] [156000] [157000] [158000] [159000] [160000] [161000] [162000] [163000] [164000] [165000] [166000] -fusion SPANNING read extraction for scaff: WAC--CELF2-DT [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] [28000] [29000] [30000] [31000] [32000] [33000] [34000] [35000] [36000] [37000] [38000] [39000] [40000] [41000] [42000] [43000] [44000] [45000] [46000] [47000] [48000] [49000] [50000] [51000] [52000] [53000] [54000] [55000] [56000] [57000] [58000] [59000] [60000] [61000] [62000] [63000] [64000] [65000] [66000] [67000] [68000] [69000] [70000] [71000] [72000] [73000] [74000] [75000] [76000] [77000] [78000] [79000] [80000] [81000] [82000] [83000] [84000] [85000] [86000] [87000] [88000] [89000] [90000] [91000] [92000] [93000] [94000] [95000] [96000] [97000] [98000] [99000] [100000] [101000] [102000] [103000] [104000] [105000] [106000] [107000] [108000] [109000] [110000] [111000] [112000] [113000] [114000] [115000] [116000] [117000] [118000] [119000] [120000] [121000] [122000] [123000] [124000] [125000] [126000] [127000] [128000] [129000] [130000] [131000] [132000] [133000] [134000] [135000] [136000] [137000] [138000] [139000] [140000] [141000] [142000] [143000] [144000] [145000] [146000] [147000] [148000] [149000] [150000] [151000] [152000] [153000] [154000] [155000] [156000] [157000] [158000] [159000] [160000] [161000] [162000] [163000] [164000] [165000] [166000] -fusion SPANNING read extraction for scaff: WAC--AL136452.1 [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] -fusion SPANNING read extraction for scaff: WRN--AP006245.2 [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] -fusion SPANNING read extraction for scaff: WRN--AC090809.1 [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] [28000] [29000] [30000] [31000] [32000] [33000] [34000] [35000] [36000] [37000] [38000] [39000] [40000] [41000] [42000] [43000] [44000] [45000] [46000] [47000] [48000] [49000] [50000] [51000] [52000] [53000] [54000] [55000] [56000] [57000] [58000] [59000] [60000] [61000] [62000] [63000] [64000] [65000] [66000] [67000] [68000] [69000] [70000] [71000] [72000] [73000] [74000] [75000] [76000] [77000] [78000] [79000] [80000] [81000] [82000] [83000] [84000] [85000] [86000] [87000] [88000] [89000] [90000] [91000] [92000] [93000] [94000] [95000] [96000] [97000] [98000] [99000] [100000] [101000] [102000] [103000] [104000] [105000] [106000] [107000] [108000] [109000] [110000] [111000] [112000] [113000] [114000] [115000] [116000] [117000] [118000] [119000] [120000] [121000] [122000] [123000] [124000] [125000] [126000] [127000] [128000] [129000] [130000] [131000] [132000] [133000] [134000] [135000] [136000] [137000] [138000] [139000] [140000] [141000] [142000] [143000] [144000] [145000] [146000] [147000] [148000] [149000] [150000] [151000] [152000] [153000] [154000] [155000] [156000] [157000] [158000] [159000] [160000] [161000] [162000] [163000] [164000] [165000] [166000] [167000] [168000] [169000] [170000] [171000] [172000] [173000] [174000] [175000] [176000] [177000] [178000] [179000] [180000] [181000] [182000] [183000] [184000] [185000] [186000] [187000] [188000] [189000] [190000] [191000] [192000] [193000] [194000] [195000] [196000] [197000] [198000] [199000] [200000] [201000] [202000] [203000] [204000] [205000] [206000] [207000] [208000] [209000] [210000] [211000] [212000] [213000] [214000] [215000] [216000] [217000] [218000] [219000] [220000] [221000] [222000] [223000] [224000] [225000] [226000] [227000] [228000] [229000] [230000] [231000] [232000] [233000] [234000] [235000] [236000] [237000] -fusion SPANNING read extraction for scaff: YWHAE--THADA [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] [28000] [29000] [30000] [31000] [32000] [33000] [34000] [35000] [36000] [37000] [38000] [39000] [40000] [41000] [42000] [43000] [44000] [45000] [46000] -fusion SPANNING read extraction for scaff: ZC3H3--SNORD3H [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] [28000] [29000] [30000] [31000] [32000] [33000] [34000] [35000] [36000] [37000] [38000] [39000] [40000] [41000] [42000] [43000] [44000] [45000] [46000] -fusion SPANNING read extraction for scaff: ZC3H3--AP002982.1 -filtered reads reasons: $VAR1 = { 'seq similar region alignment' => 4959, 'lacks exon overlap' => 76943 }; Execution Time = 5.11 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/get_fusion_SPANNING_reads_from_bam.from_chim_summary.pl --gtf_file /tmp/nxf.RoPOUI5bJu/fi_workdir/tih_rna_sample_00676_B23MVV7LT4_1.gtf --MIN_ALIGN_PER_ID 96 --bam /tmp/nxf.RoPOUI5bJu/fi_workdir/tih_rna_sample_00676_B23MVV7LT4_1.star.cSorted.dupsMarked.bam --junction_info /tmp/nxf.RoPOUI5bJu/fi_workdir/tih_rna_sample_00676_B23MVV7LT4_1.star.cSorted.dupsMarked.bam.fusion_junction_info --genome_lib_dir ctat_genome_lib_build_dir > /tmp/nxf.RoPOUI5bJu/fi_workdir/tih_rna_sample_00676_B23MVV7LT4_1.star.cSorted.dupsMarked.bam.fusion_span_reads.sam Running: touch /tmp/nxf.RoPOUI5bJu/chckpts_dir/get_fusion_SPANNING_reads_from_bam.ok Running: /usr/local/src/STAR-Fusion/FusionInspector/util/coalesce_junction_and_spanning_info.pl /tmp/nxf.RoPOUI5bJu/fi_workdir/tih_rna_sample_00676_B23MVV7LT4_1.star.cSorted.dupsMarked.bam.fusion_junction_info /tmp/nxf.RoPOUI5bJu/fi_workdir/tih_rna_sample_00676_B23MVV7LT4_1.star.cSorted.dupsMarked.bam.fusion_spanning_info 1 > /tmp/nxf.RoPOUI5bJu/fi_workdir/tih_rna_sample_00676_B23MVV7LT4_1.fusion_preds.coalesced.summary Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/coalesce_junction_and_spanning_info.pl /tmp/nxf.RoPOUI5bJu/fi_workdir/tih_rna_sample_00676_B23MVV7LT4_1.star.cSorted.dupsMarked.bam.fusion_junction_info /tmp/nxf.RoPOUI5bJu/fi_workdir/tih_rna_sample_00676_B23MVV7LT4_1.star.cSorted.dupsMarked.bam.fusion_spanning_info 1 > /tmp/nxf.RoPOUI5bJu/fi_workdir/tih_rna_sample_00676_B23MVV7LT4_1.fusion_preds.coalesced.summary Running: touch /tmp/nxf.RoPOUI5bJu/chckpts_dir/coalesce_junc_n_span.ok Running: /usr/local/src/STAR-Fusion/FusionInspector/util/fusion_EM_runner.pl /tmp/nxf.RoPOUI5bJu/fi_workdir/tih_rna_sample_00676_B23MVV7LT4_1.fusion_preds.coalesced.summary > /tmp/nxf.RoPOUI5bJu/fi_workdir/tih_rna_sample_00676_B23MVV7LT4_1.fusion_preds.coalesced.summary.EMadj EM: Starting log likelihood: -34297.028524 EM: Round [1] log likelihood: -34181.787399 EM: Round [2] log likelihood: -34180.489593 EM: Round [3] log likelihood: -34180.479090 EM: Round [4] log likelihood: -34180.478961 EM: Round [5] log likelihood: -34180.478959 EM: Stopping iterations at round 5 due to insufficient improvement in likelihood. Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/fusion_EM_runner.pl /tmp/nxf.RoPOUI5bJu/fi_workdir/tih_rna_sample_00676_B23MVV7LT4_1.fusion_preds.coalesced.summary > /tmp/nxf.RoPOUI5bJu/fi_workdir/tih_rna_sample_00676_B23MVV7LT4_1.fusion_preds.coalesced.summary.EMadj Running: touch /tmp/nxf.RoPOUI5bJu/chckpts_dir/init_EM_adj_counts.ok Running: /usr/local/src/STAR-Fusion/FusionInspector/util/filter_fusions_by_frag_thresholds.pl --min_junction_reads 0 --min_sum_frags 1 --min_novel_junction_support 3 --min_spanning_frags_only 5 --fusion_preds /tmp/nxf.RoPOUI5bJu/fi_workdir/tih_rna_sample_00676_B23MVV7LT4_1.fusion_preds.coalesced.summary.EMadj --require_LDAS 1 > /tmp/nxf.RoPOUI5bJu/fi_workdir/tih_rna_sample_00676_B23MVV7LT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/filter_fusions_by_frag_thresholds.pl --min_junction_reads 0 --min_sum_frags 1 --min_novel_junction_support 3 --min_spanning_frags_only 5 --fusion_preds /tmp/nxf.RoPOUI5bJu/fi_workdir/tih_rna_sample_00676_B23MVV7LT4_1.fusion_preds.coalesced.summary.EMadj --require_LDAS 1 > /tmp/nxf.RoPOUI5bJu/fi_workdir/tih_rna_sample_00676_B23MVV7LT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh Running: touch /tmp/nxf.RoPOUI5bJu/chckpts_dir/filter_by_frag_threshs.ok Running: /usr/local/src/STAR-Fusion/FusionInspector/util/column_extractions.pl /tmp/nxf.RoPOUI5bJu/fi_workdir/tih_rna_sample_00676_B23MVV7LT4_1.fusion_preds.coalesced.summary LeftGene,RightGene,JunctionReads > /tmp/nxf.RoPOUI5bJu/fi_workdir/tih_rna_sample_00676_B23MVV7LT4_1.fusion_preds.coalesced.summary.fusion_junction_read_accs Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/column_extractions.pl /tmp/nxf.RoPOUI5bJu/fi_workdir/tih_rna_sample_00676_B23MVV7LT4_1.fusion_preds.coalesced.summary LeftGene,RightGene,JunctionReads > /tmp/nxf.RoPOUI5bJu/fi_workdir/tih_rna_sample_00676_B23MVV7LT4_1.fusion_preds.coalesced.summary.fusion_junction_read_accs Running: touch /tmp/nxf.RoPOUI5bJu/chckpts_dir/prep_igv_extract_junc_reads.ok Running: bash -c "set -eof pipefail; /usr/local/src/STAR-Fusion/FusionInspector/util/retrieve_fusion_junction_reads_by_accession.pl /tmp/nxf.RoPOUI5bJu/fi_workdir/tih_rna_sample_00676_B23MVV7LT4_1.fusion_preds.coalesced.summary.fusion_junction_read_accs /tmp/nxf.RoPOUI5bJu/fi_workdir/tih_rna_sample_00676_B23MVV7LT4_1.star.cSorted.dupsMarked.bam.fusion_junc_reads.sam | samtools view -@ 8 -bT /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.fa - | samtools sort -@ 8 - -o /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.junction_reads.bam" [bam_sort_core] merging from 0 files and 8 in-memory blocks... Execution Time = 0.00 minutes. CMD: bash -c "set -eof pipefail; /usr/local/src/STAR-Fusion/FusionInspector/util/retrieve_fusion_junction_reads_by_accession.pl /tmp/nxf.RoPOUI5bJu/fi_workdir/tih_rna_sample_00676_B23MVV7LT4_1.fusion_preds.coalesced.summary.fusion_junction_read_accs /tmp/nxf.RoPOUI5bJu/fi_workdir/tih_rna_sample_00676_B23MVV7LT4_1.star.cSorted.dupsMarked.bam.fusion_junc_reads.sam | samtools view -@ 8 -bT /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.fa - | samtools sort -@ 8 - -o /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.junction_reads.bam" Running: touch /tmp/nxf.RoPOUI5bJu/chckpts_dir/prep_igv_junc_reads_bam.ok Running: samtools index /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.junction_reads.bam Execution Time = 0.00 minutes. CMD: samtools index /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.junction_reads.bam Running: touch /tmp/nxf.RoPOUI5bJu/chckpts_dir/samtools_idx_junc_reads_bam.ok Running: /usr/local/src/STAR-Fusion/FusionInspector/util/SAM_pair_to_bed.pl /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.junction_reads.bam > /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.junction_reads.bam.bed Execution Time = 0.01 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/SAM_pair_to_bed.pl /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.junction_reads.bam > /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.junction_reads.bam.bed Running: touch /tmp/nxf.RoPOUI5bJu/chckpts_dir/tih_rna_sample_00676_B23MVV7LT4_1.junction_reads.bam.bam_to_bed.ok Running: sort -k1,1 -k2,2n /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.junction_reads.bam.bed > /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.junction_reads.bam.bed.sorted.bed Execution Time = 0.00 minutes. CMD: sort -k1,1 -k2,2n /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.junction_reads.bam.bed > /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.junction_reads.bam.bed.sorted.bed Running: touch /tmp/nxf.RoPOUI5bJu/chckpts_dir/tih_rna_sample_00676_B23MVV7LT4_1.junction_reads.bam.bedsort.ok Running: bgzip -f /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.junction_reads.bam.bed.sorted.bed Execution Time = 0.00 minutes. CMD: bgzip -f /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.junction_reads.bam.bed.sorted.bed Running: touch /tmp/nxf.RoPOUI5bJu/chckpts_dir/tih_rna_sample_00676_B23MVV7LT4_1.junction_reads.bam.bgzip.ok Running: tabix -p bed /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.junction_reads.bam.bed.sorted.bed.gz Execution Time = 0.00 minutes. CMD: tabix -p bed /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.junction_reads.bam.bed.sorted.bed.gz Running: touch /tmp/nxf.RoPOUI5bJu/chckpts_dir/tih_rna_sample_00676_B23MVV7LT4_1.junction_reads.bam.tabix.ok Running: /usr/local/src/STAR-Fusion/FusionInspector/util/column_extractions.pl /tmp/nxf.RoPOUI5bJu/fi_workdir/tih_rna_sample_00676_B23MVV7LT4_1.fusion_preds.coalesced.summary LeftGene,RightGene,SpanningFrags > /tmp/nxf.RoPOUI5bJu/fi_workdir/tih_rna_sample_00676_B23MVV7LT4_1.fusion_preds.coalesced.summary.fusion_spanning_read_accs Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/column_extractions.pl /tmp/nxf.RoPOUI5bJu/fi_workdir/tih_rna_sample_00676_B23MVV7LT4_1.fusion_preds.coalesced.summary LeftGene,RightGene,SpanningFrags > /tmp/nxf.RoPOUI5bJu/fi_workdir/tih_rna_sample_00676_B23MVV7LT4_1.fusion_preds.coalesced.summary.fusion_spanning_read_accs Running: touch /tmp/nxf.RoPOUI5bJu/chckpts_dir/span_reads_acc.ok Running: samtools view -H /tmp/nxf.RoPOUI5bJu/fi_workdir/tih_rna_sample_00676_B23MVV7LT4_1.star.cSorted.dupsMarked.bam -b -o /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.spanning_reads.bam Execution Time = 0.00 minutes. CMD: samtools view -H /tmp/nxf.RoPOUI5bJu/fi_workdir/tih_rna_sample_00676_B23MVV7LT4_1.star.cSorted.dupsMarked.bam -b -o /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.spanning_reads.bam Running: touch /tmp/nxf.RoPOUI5bJu/chckpts_dir/init_spanning_reads_bam.ok Running: /usr/local/src/STAR-Fusion/FusionInspector/util/retrieve_fusion_spanning_reads_by_accession.pl /tmp/nxf.RoPOUI5bJu/fi_workdir/tih_rna_sample_00676_B23MVV7LT4_1.fusion_preds.coalesced.summary.fusion_spanning_read_accs /tmp/nxf.RoPOUI5bJu/fi_workdir/tih_rna_sample_00676_B23MVV7LT4_1.star.cSorted.dupsMarked.bam.fusion_span_reads.sam | samtools view -@ 8 -bT /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.fa - | samtools sort -@ 8 - -o /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.spanning_reads.bam || : [bam_sort_core] merging from 0 files and 8 in-memory blocks... Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/retrieve_fusion_spanning_reads_by_accession.pl /tmp/nxf.RoPOUI5bJu/fi_workdir/tih_rna_sample_00676_B23MVV7LT4_1.fusion_preds.coalesced.summary.fusion_spanning_read_accs /tmp/nxf.RoPOUI5bJu/fi_workdir/tih_rna_sample_00676_B23MVV7LT4_1.star.cSorted.dupsMarked.bam.fusion_span_reads.sam | samtools view -@ 8 -bT /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.fa - | samtools sort -@ 8 - -o /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.spanning_reads.bam || : Running: touch /tmp/nxf.RoPOUI5bJu/chckpts_dir/prep_spanning_reads.ok Running: samtools index /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.spanning_reads.bam Execution Time = 0.00 minutes. CMD: samtools index /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.spanning_reads.bam Running: touch /tmp/nxf.RoPOUI5bJu/chckpts_dir/samtools_index_span_reads_bam.ok Running: /usr/local/src/STAR-Fusion/FusionInspector/util/SAM_pair_to_bed.pl /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.spanning_reads.bam > /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.spanning_reads.bam.bed Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/SAM_pair_to_bed.pl /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.spanning_reads.bam > /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.spanning_reads.bam.bed Running: touch /tmp/nxf.RoPOUI5bJu/chckpts_dir/tih_rna_sample_00676_B23MVV7LT4_1.spanning_reads.bam.bam_to_bed.ok Running: sort -k1,1 -k2,2n /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.spanning_reads.bam.bed > /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.spanning_reads.bam.bed.sorted.bed Execution Time = 0.00 minutes. CMD: sort -k1,1 -k2,2n /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.spanning_reads.bam.bed > /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.spanning_reads.bam.bed.sorted.bed Running: touch /tmp/nxf.RoPOUI5bJu/chckpts_dir/tih_rna_sample_00676_B23MVV7LT4_1.spanning_reads.bam.bedsort.ok Running: bgzip -f /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.spanning_reads.bam.bed.sorted.bed Execution Time = 0.00 minutes. CMD: bgzip -f /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.spanning_reads.bam.bed.sorted.bed Running: touch /tmp/nxf.RoPOUI5bJu/chckpts_dir/tih_rna_sample_00676_B23MVV7LT4_1.spanning_reads.bam.bgzip.ok Running: tabix -p bed /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.spanning_reads.bam.bed.sorted.bed.gz Execution Time = 0.00 minutes. CMD: tabix -p bed /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.spanning_reads.bam.bed.sorted.bed.gz Running: touch /tmp/nxf.RoPOUI5bJu/chckpts_dir/tih_rna_sample_00676_B23MVV7LT4_1.spanning_reads.bam.tabix.ok Running: cp /tmp/nxf.RoPOUI5bJu/fi_workdir/tih_rna_sample_00676_B23MVV7LT4_1.star.cSorted.dupsMarked.bam /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.consolidated.bam Execution Time = 0.00 minutes. CMD: cp /tmp/nxf.RoPOUI5bJu/fi_workdir/tih_rna_sample_00676_B23MVV7LT4_1.star.cSorted.dupsMarked.bam /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.consolidated.bam Running: touch /tmp/nxf.RoPOUI5bJu/chckpts_dir/cp_consol_bam.ok Running: samtools index /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.consolidated.bam Execution Time = 0.04 minutes. CMD: samtools index /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.consolidated.bam Running: touch /tmp/nxf.RoPOUI5bJu/chckpts_dir/index_consol_bam.ok Running: /usr/local/src/STAR-Fusion/FusionInspector/util/SAM_to_frag_coords.pl --sam /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.consolidated.bam --max_insert_size 10000000 -extracting read coordinates from /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.consolidated.bam into /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.consolidated.bam.read_coords CMD: touch /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.consolidated.bam.read_coords.ok CMD: /usr/bin/sort --parallel=1 -S10G -T . -k1,1 -k2,2 -k4,4n /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.consolidated.bam.read_coords > /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.consolidated.bam.read_coords.sort_by_readname CMD: /usr/bin/sort --parallel=1 -S10G -T . -k1,1 -k3,3n /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.consolidated.bam.frag_coords > /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.consolidated.bam.frag_coords.coord_sorted Execution Time = 0.86 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/SAM_to_frag_coords.pl --sam /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.consolidated.bam --max_insert_size 10000000 Running: touch /tmp/nxf.RoPOUI5bJu/chckpts_dir/prep_igv_sam_frag_coordss.ok Running: /usr/local/src/STAR-Fusion/FusionInspector/util/fusion_summary_to_igv_JuncSpan_fmt.pl /tmp/nxf.RoPOUI5bJu/fi_workdir/tih_rna_sample_00676_B23MVV7LT4_1.fusion_preds.coalesced.summary /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.consolidated.bam.frag_coords > /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.igv.FusionJuncSpan Execution Time = 0.02 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/fusion_summary_to_igv_JuncSpan_fmt.pl /tmp/nxf.RoPOUI5bJu/fi_workdir/tih_rna_sample_00676_B23MVV7LT4_1.fusion_preds.coalesced.summary /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.consolidated.bam.frag_coords > /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.igv.FusionJuncSpan Running: touch /tmp/nxf.RoPOUI5bJu/chckpts_dir/prep_igv_juncspan_fmt.ok Running: /usr/local/src/STAR-Fusion/FusionInspector/util/get_pfam_domain_info.pl --finspector_gtf /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.gtf --genome_lib_dir ctat_genome_lib_build_dir > /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.igv.Pfam.gff3 Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/get_pfam_domain_info.pl --finspector_gtf /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.gtf --genome_lib_dir ctat_genome_lib_build_dir > /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.igv.Pfam.gff3 Running: touch /tmp/nxf.RoPOUI5bJu/chckpts_dir/prep_igv_pfam_gff3.ok Running: /usr/local/src/STAR-Fusion/FusionInspector/util/transcript_gff3_to_bed.pl /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.igv.Pfam.gff3 > /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.igv.Pfam.bed Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/transcript_gff3_to_bed.pl /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.igv.Pfam.gff3 > /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.igv.Pfam.bed Running: touch /tmp/nxf.RoPOUI5bJu/chckpts_dir/prep_igv_pfam_bed.ok Running: /usr/local/src/STAR-Fusion/FusionInspector/util/get_seq_similar_region_FI_coordinates.pl --finspector_gtf /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.gtf --genome_lib_dir ctat_genome_lib_build_dir > /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.igv.seqsimilar.gff3 Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/get_seq_similar_region_FI_coordinates.pl --finspector_gtf /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.gtf --genome_lib_dir ctat_genome_lib_build_dir > /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.igv.seqsimilar.gff3 Running: touch /tmp/nxf.RoPOUI5bJu/chckpts_dir/prep_igv_seqsim_gff3.ok Running: /usr/local/src/STAR-Fusion/FusionInspector/util/transcript_gff3_to_bed.pl /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.igv.seqsimilar.gff3 > /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.igv.seqsimilar.bed Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/transcript_gff3_to_bed.pl /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.igv.seqsimilar.gff3 > /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.igv.seqsimilar.bed Running: touch /tmp/nxf.RoPOUI5bJu/chckpts_dir/prep_igv_seqsim_bed.ok Running: /usr/local/src/STAR-Fusion/FusionInspector/util/append_breakpoint_junction_info_via_FI_contigs.pl /tmp/nxf.RoPOUI5bJu/fi_workdir/tih_rna_sample_00676_B23MVV7LT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.fa > /tmp/nxf.RoPOUI5bJu/fi_workdir/tih_rna_sample_00676_B23MVV7LT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/append_breakpoint_junction_info_via_FI_contigs.pl /tmp/nxf.RoPOUI5bJu/fi_workdir/tih_rna_sample_00676_B23MVV7LT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.fa > /tmp/nxf.RoPOUI5bJu/fi_workdir/tih_rna_sample_00676_B23MVV7LT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo Running: touch /tmp/nxf.RoPOUI5bJu/chckpts_dir/add_splice_info.ok Running: /usr/local/src/STAR-Fusion/FusionInspector/util/../FusionFilter/blast_and_promiscuity_filter.pl --fusion_preds /tmp/nxf.RoPOUI5bJu/fi_workdir/tih_rna_sample_00676_B23MVV7LT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo --out_prefix /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1 --genome_lib_dir ctat_genome_lib_build_dir --max_promiscuity 10 --min_pct_dom_promiscuity 50 CMD: /usr/local/src/STAR-Fusion/FusionInspector/FusionFilter/util/blast_filter.pl --fusion_preds /tmp/nxf.RoPOUI5bJu/fi_workdir/tih_rna_sample_00676_B23MVV7LT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo --genome_lib_dir ctat_genome_lib_build_dir CMD: /usr/local/src/STAR-Fusion/FusionInspector/FusionFilter/util/promiscuity_filter.pl --fusion_preds /tmp/nxf.RoPOUI5bJu/fi_workdir/tih_rna_sample_00676_B23MVV7LT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo.post_blast_filter --genome_lib_dir ctat_genome_lib_build_dir --max_promiscuity 10 --min_pct_dom_promiscuity 50 CMD: cp /tmp/nxf.RoPOUI5bJu/fi_workdir/tih_rna_sample_00676_B23MVV7LT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo.post_blast_filter.post_promisc_filter /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.post_blast_and_promiscuity_filter Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/../FusionFilter/blast_and_promiscuity_filter.pl --fusion_preds /tmp/nxf.RoPOUI5bJu/fi_workdir/tih_rna_sample_00676_B23MVV7LT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo --out_prefix /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1 --genome_lib_dir ctat_genome_lib_build_dir --max_promiscuity 10 --min_pct_dom_promiscuity 50 Running: touch /tmp/nxf.RoPOUI5bJu/chckpts_dir/blast_filter.ok Running: /usr/local/src/STAR-Fusion/FusionInspector/util/../FusionFilter/util/filter_by_annotation_rules.pl --fusions /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.post_blast_and_promiscuity_filter --genome_lib_dir /tmp/nxf.RoPOUI5bJu/ctat_genome_lib_build_dir -done, see /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.post_blast_and_promiscuity_filter.annot_filter.pass Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/../FusionFilter/util/filter_by_annotation_rules.pl --fusions /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.post_blast_and_promiscuity_filter --genome_lib_dir /tmp/nxf.RoPOUI5bJu/ctat_genome_lib_build_dir Running: touch /tmp/nxf.RoPOUI5bJu/chckpts_dir/annot_filter.ok Running: /usr/local/src/STAR-Fusion/FusionInspector/util/fusion_EM_runner.pl /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.post_blast_and_promiscuity_filter.annot_filter.pass > /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj EM: Starting log likelihood: -33434.290983 EM: Round [1] log likelihood: -33358.116706 EM: Round [2] log likelihood: -33356.860548 EM: Round [3] log likelihood: -33356.847625 EM: Round [4] log likelihood: -33356.847454 EM: Round [5] log likelihood: -33356.847451 EM: Stopping iterations at round 5 due to insufficient improvement in likelihood. Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/fusion_EM_runner.pl /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.post_blast_and_promiscuity_filter.annot_filter.pass > /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj Running: touch /tmp/nxf.RoPOUI5bJu/chckpts_dir/EM_adj_counts.ok Running: /usr/local/src/STAR-Fusion/FusionInspector/util/incorporate_FFPM_into_final_report.pl /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1_1.fastp.fastq.gz /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj > /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj.FFPM -total frags in /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1_1.fastp.fastq.gz: 295434659 Execution Time = 5.80 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/incorporate_FFPM_into_final_report.pl /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1_1.fastp.fastq.gz /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj > /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj.FFPM Running: touch /tmp/nxf.RoPOUI5bJu/chckpts_dir/add_FFPM.ok Running: /usr/local/src/STAR-Fusion/FusionInspector/util/misc/find_microhomologies_by_kmer_matches.pl --fasta /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.fa --gtf /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.gtf > /tmp/nxf.RoPOUI5bJu/fi_workdir/microH.dat Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/misc/find_microhomologies_by_kmer_matches.pl --fasta /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.fa --gtf /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.gtf > /tmp/nxf.RoPOUI5bJu/fi_workdir/microH.dat Running: touch /tmp/nxf.RoPOUI5bJu/chckpts_dir/microH.dat.ok Running: /usr/local/src/STAR-Fusion/FusionInspector/util/misc/append_microH_distance.py /tmp/nxf.RoPOUI5bJu/fi_workdir/microH.dat /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj.FFPM > /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj.FFPM.wMicroH Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/misc/append_microH_distance.py /tmp/nxf.RoPOUI5bJu/fi_workdir/microH.dat /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj.FFPM > /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj.FFPM.wMicroH Running: touch /tmp/nxf.RoPOUI5bJu/chckpts_dir/append_microH_info.ok Running: cp /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj.FFPM.wMicroH /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.FusionInspector.fusions.tsv Execution Time = 0.00 minutes. CMD: cp /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj.FFPM.wMicroH /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.FusionInspector.fusions.tsv Running: touch /tmp/nxf.RoPOUI5bJu/chckpts_dir/cp_final.ok Running: /usr/local/src/STAR-Fusion/FusionInspector/util/column_exclusions.pl /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.FusionInspector.fusions.tsv JunctionReads,SpanningFrags,CounterFusionLeftReads,CounterFusionRightReads > /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.FusionInspector.fusions.abridged.tsv Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/column_exclusions.pl /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.FusionInspector.fusions.tsv JunctionReads,SpanningFrags,CounterFusionLeftReads,CounterFusionRightReads > /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.FusionInspector.fusions.abridged.tsv Running: touch /tmp/nxf.RoPOUI5bJu/chckpts_dir/final.abridged.ok Running: /usr/local/src/STAR-Fusion/FusionInspector/util/create_fusion_inspector_igvjs.py --fusion_inspector_directory /tmp/nxf.RoPOUI5bJu --json_outfile /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.fusion_inspector_web.json --file_prefix tih_rna_sample_00676_B23MVV7LT4_1 Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/create_fusion_inspector_igvjs.py --fusion_inspector_directory /tmp/nxf.RoPOUI5bJu --json_outfile /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.fusion_inspector_web.json --file_prefix tih_rna_sample_00676_B23MVV7LT4_1 Running: touch /tmp/nxf.RoPOUI5bJu/chckpts_dir/create_fi_igvjs.ok Running: /usr/local/src/STAR-Fusion/FusionInspector/fusion-reports/create_fusion_report.py --html_template /usr/local/src/STAR-Fusion/FusionInspector/util/fusion_report_html_template/igvjs_fusion.html --fusions_json /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.fusion_inspector_web.json --input_file_prefix tih_rna_sample_00676_B23MVV7LT4_1 --html_output /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.fusion_inspector_web.html Warning - not locating file: /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.gmap_trinity_GG.fusions.gff3.bed Execution Time = 0.02 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/fusion-reports/create_fusion_report.py --html_template /usr/local/src/STAR-Fusion/FusionInspector/util/fusion_report_html_template/igvjs_fusion.html --fusions_json /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.fusion_inspector_web.json --input_file_prefix tih_rna_sample_00676_B23MVV7LT4_1 --html_output /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.fusion_inspector_web.html Running: touch /tmp/nxf.RoPOUI5bJu/chckpts_dir/fusion_reports_html.ok Running: /usr/local/src/STAR-Fusion/FusionInspector/FusionAnnotator/FusionAnnotator --annotate /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.FusionInspector.fusions.abridged.tsv --genome_lib_dir /tmp/nxf.RoPOUI5bJu/ctat_genome_lib_build_dir > /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.FusionInspector.fusions.abridged.tsv.annotated Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/FusionAnnotator/FusionAnnotator --annotate /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.FusionInspector.fusions.abridged.tsv --genome_lib_dir /tmp/nxf.RoPOUI5bJu/ctat_genome_lib_build_dir > /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.FusionInspector.fusions.abridged.tsv.annotated Running: touch /tmp/nxf.RoPOUI5bJu/chckpts_dir/fusion_annotator.ok Running: /usr/local/src/STAR-Fusion/FusionInspector/FusionAnnotator/util/fusion_to_coding_region_effect.pl --fusions /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.FusionInspector.fusions.abridged.tsv.annotated --genome_lib_dir /tmp/nxf.RoPOUI5bJu/ctat_genome_lib_build_dir > /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.FusionInspector.fusions.abridged.tsv.annotated.coding_effect WARNING, no entry stored in dbm for [ENSG00000236117.1] WARNING, no entry stored in dbm for [ENSG00000236117.1] WARNING, no entry stored in dbm for [ENSG00000236117.1] WARNING, no entry stored in dbm for [ENSG00000236117.1] WARNING, no entry stored in dbm for [ENSG00000236117.1] WARNING, no entry stored in dbm for [ENSG00000236117.1] WARNING, no entry stored in dbm for [ENSG00000236117.1] WARNING, no entry stored in dbm for [ENSG00000236117.1] WARNING, no entry stored in dbm for [ENSG00000236117.1] WARNING, no entry stored in dbm for [ENSG00000236117.1] WARNING, no entry stored in dbm for [ENSG00000236117.1] WARNING, no entry stored in dbm for [ENSG00000236117.1] WARNING, no entry stored in dbm for [ENSG00000236117.1] WARNING, no entry stored in dbm for [ENSG00000236117.1] WARNING, no entry stored in dbm for [ENSG00000236117.1] WARNING, no entry stored in dbm for [ENSG00000236117.1] WARNING, no entry stored in dbm for [ENSG00000236117.1] WARNING, no entry stored in dbm for [ENSG00000236117.1] WARNING, no entry stored in dbm for [ENSG00000236117.1] WARNING, no entry stored in dbm for [ENSG00000236117.1] WARNING, no entry stored in dbm for [ENSG00000237838.1] WARNING, no entry stored in dbm for [ENSG00000237838.1] WARNING, no entry stored in dbm for [ENSG00000280136.2] WARNING, no entry stored in dbm for [ENSG00000253320.7] WARNING, no entry stored in dbm for [ENSG00000253320.7] WARNING, no entry stored in dbm for [ENSG00000226049.3] WARNING, no entry stored in dbm for [ENSG00000260404.3] WARNING, no entry stored in dbm for [ENSG00000242193.11] WARNING, no entry stored in dbm for [ENSG00000242193.11] WARNING, no entry stored in dbm for [ENSG00000242193.11] WARNING, no entry stored in dbm for [ENSG00000242193.11] WARNING, no entry stored in dbm for [ENSG00000285737.1] WARNING, no entry stored in dbm for [ENSG00000285737.1] WARNING, no entry stored in dbm for [ENSG00000254633.2] WARNING, no entry stored in dbm for [ENSG00000254633.2] WARNING, no entry stored in dbm for [ENSG00000286030.2] WARNING, no entry stored in dbm for [ENSG00000286030.2] WARNING, no entry stored in dbm for [ENSG00000286065.2] WARNING, no entry stored in dbm for [ENSG00000286030.2] WARNING, no entry stored in dbm for [ENSG00000286030.2] WARNING, no entry stored in dbm for [ENSG00000253783.1] Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/FusionAnnotator/util/fusion_to_coding_region_effect.pl --fusions /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.FusionInspector.fusions.abridged.tsv.annotated --genome_lib_dir /tmp/nxf.RoPOUI5bJu/ctat_genome_lib_build_dir > /tmp/nxf.RoPOUI5bJu/tih_rna_sample_00676_B23MVV7LT4_1.FusionInspector.fusions.abridged.tsv.annotated.coding_effect Running: touch /tmp/nxf.RoPOUI5bJu/chckpts_dir/fusion_coding_region_effect.ok ls: cannot access 'IGV_inputs': No such file or directory