.command.sh - Workdir - NFCORE_RNAFUSION:RNAFUSION:GTF2BED (ref_annot.gtf)

File Info

Filename: .command.sh
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f8/e88fd7fc7045f143707b3a331bf8bc/.command.sh
Size: 237 bytes
Task: NFCORE_RNAFUSION:RNAFUSION:GTF2BED (ref_annot.gtf)
Attempt

Content

#!/bin/bash -euo pipefail
gtf2bed \
    ref_annot.gtf \
    > ref_annot.bed

cat <<-END_VERSIONS > versions.yml
"NFCORE_RNAFUSION:RNAFUSION:GTF2BED":
    perl: $(echo $(perl --version 2>&1) | sed 's/.*v\(.*\)) built.*/\1/')
END_VERSIONS