Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3c/ed0d832552cc5cf0e3e04200feded9/tih_rna_sample_00680_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f9/dd6bbe07e1dcafa9252c3435019e06/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f9/dd6bbe07e1dcafa9252c3435019e06/.command.run
==> STAGING COMPLETE (3 inputs)

ls: *.csi: No such file or directory
ls: *.crai: No such file or directory