Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d6/c7a81d723781043ef86a987249cc1d/tih_rna_sample_00729_B23MVV7LT4_1.star_alignment.Aligned.sortedByCoord.out.cram
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8a/9a8a0166bac8a1a8bb6dc89241c85a/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8a/9a8a0166bac8a1a8bb6dc89241c85a/.command.run
==> STAGING COMPLETE (3 inputs)

ls: *.bai: No such file or directory
ls: *.csi: No such file or directory