Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/98/004f22c33a723553dab60141646a1e/tih_rna_sample_00591_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c5/f6f773918406d6eb71e7a255bf3313/tih_rna_sample_00591_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a8/48e1d5fcd88b7a3c7ad32e95252cfd/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a8/48e1d5fcd88b7a3c7ad32e95252cfd/.command.run
==> STAGING COMPLETE (4 inputs)

[W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00591_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai
Load BAM file ...  Done
report duplicte rate based on sequence ...
report duplicte rate based on mapping  ...
generate R script ...
null device 
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