Using GATK jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar
Running:
    java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -Xmx60620M -XX:-UsePerfData -XX:ParallelGCThreads=2 -jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar MarkDuplicates --INPUT tih_rna_sample_00581_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam --OUTPUT tih_rna_sample_00581_B23MVV7LT4_1.md.bam --METRICS_FILE tih_rna_sample_00581_B23MVV7LT4_1.md.bam.metrics --TMP_DIR . --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa -REMOVE_DUPLICATES false -VALIDATION_STRINGENCY LENIENT
08:40:04.298 INFO  NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar!/com/intel/gkl/native/libgkl_compression.so
[Mon Jun 08 08:40:04 GMT 2026] MarkDuplicates --INPUT tih_rna_sample_00581_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam --OUTPUT tih_rna_sample_00581_B23MVV7LT4_1.md.bam --METRICS_FILE tih_rna_sample_00581_B23MVV7LT4_1.md.bam.metrics --REMOVE_DUPLICATES false --TMP_DIR . --VALIDATION_STRINGENCY LENIENT --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --FLOW_MODE false --FLOW_QUALITY_SUM_STRATEGY false --USE_END_IN_UNPAIRED_READS false --USE_UNPAIRED_CLIPPED_END false --UNPAIRED_END_UNCERTAINTY 0 --FLOW_SKIP_FIRST_N_FLOWS 0 --FLOW_Q_IS_KNOWN_END false --FLOW_EFFECTIVE_QUALITY_THRESHOLD 15 --ADD_PG_TAG_TO_READS true --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX <optimized capture of last three ':' separated fields as numeric values> --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --VERBOSITY INFO --QUIET false --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Mon Jun 08 08:40:04 GMT 2026] Executing as ?@nf-9766490b76973a9679d6c0934a160dc6-2eb1d-kzmn2 on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 17.0.3-internal+0-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:4.4.0.0
INFO	2026-06-08 08:40:04	MarkDuplicates	Start of doWork freeMemory: 105492384; totalMemory: 134217728; maxMemory: 63585648640
INFO	2026-06-08 08:40:04	MarkDuplicates	Reading input file and constructing read end information.
INFO	2026-06-08 08:40:04	MarkDuplicates	Will retain up to 230382784 data points before spilling to disk.
INFO	2026-06-08 08:40:09	MarkDuplicates	Read     1,000,000 records.  Elapsed time: 00:00:03s.  Time for last 1,000,000:    3s.  Last read position: chr1:1,211,618
INFO	2026-06-08 08:40:09	MarkDuplicates	Tracking 2321 as yet unmatched pairs. 94 records in RAM.
INFO	2026-06-08 08:40:12	MarkDuplicates	Read     2,000,000 records.  Elapsed time: 00:00:05s.  Time for last 1,000,000:    2s.  Last read position: chr1:1,630,326
INFO	2026-06-08 08:40:12	MarkDuplicates	Tracking 5540 as yet unmatched pairs. 506 records in RAM.
INFO	2026-06-08 08:40:13	MarkDuplicates	Read     3,000,000 records.  Elapsed time: 00:00:07s.  Time for last 1,000,000:    1s.  Last read position: chr1:5,891,009
INFO	2026-06-08 08:40:13	MarkDuplicates	Tracking 7765 as yet unmatched pairs. 78 records in RAM.
INFO	2026-06-08 08:40:15	MarkDuplicates	Read     4,000,000 records.  Elapsed time: 00:00:09s.  Time for last 1,000,000:    2s.  Last read position: chr1:8,361,072
INFO	2026-06-08 08:40:15	MarkDuplicates	Tracking 11018 as yet unmatched pairs. 609 records in RAM.
INFO	2026-06-08 08:40:17	MarkDuplicates	Read     5,000,000 records.  Elapsed time: 00:00:11s.  Time for last 1,000,000:    1s.  Last read position: chr1:10,647,966
INFO	2026-06-08 08:40:17	MarkDuplicates	Tracking 13035 as yet unmatched pairs. 124 records in RAM.
INFO	2026-06-08 08:40:19	MarkDuplicates	Read     6,000,000 records.  Elapsed time: 00:00:13s.  Time for last 1,000,000:    2s.  Last read position: chr1:13,778,457
INFO	2026-06-08 08:40:19	MarkDuplicates	Tracking 15563 as yet unmatched pairs. 154 records in RAM.
INFO	2026-06-08 08:40:21	MarkDuplicates	Read     7,000,000 records.  Elapsed time: 00:00:15s.  Time for last 1,000,000:    2s.  Last read position: chr1:16,393,299
INFO	2026-06-08 08:40:21	MarkDuplicates	Tracking 18363 as yet unmatched pairs. 571 records in RAM.
INFO	2026-06-08 08:40:23	MarkDuplicates	Read     8,000,000 records.  Elapsed time: 00:00:17s.  Time for last 1,000,000:    1s.  Last read position: chr1:19,119,577
INFO	2026-06-08 08:40:23	MarkDuplicates	Tracking 20538 as yet unmatched pairs. 330 records in RAM.
INFO	2026-06-08 08:40:25	MarkDuplicates	Read     9,000,000 records.  Elapsed time: 00:00:19s.  Time for last 1,000,000:    2s.  Last read position: chr1:21,176,777
INFO	2026-06-08 08:40:25	MarkDuplicates	Tracking 22634 as yet unmatched pairs. 27 records in RAM.
INFO	2026-06-08 08:40:27	MarkDuplicates	Read    10,000,000 records.  Elapsed time: 00:00:21s.  Time for last 1,000,000:    1s.  Last read position: chr1:21,880,358
INFO	2026-06-08 08:40:27	MarkDuplicates	Tracking 25180 as yet unmatched pairs. 213 records in RAM.
INFO	2026-06-08 08:40:28	MarkDuplicates	Read    11,000,000 records.  Elapsed time: 00:00:22s.  Time for last 1,000,000:    1s.  Last read position: chr1:22,639,337
INFO	2026-06-08 08:40:28	MarkDuplicates	Tracking 30405 as yet unmatched pairs. 2991 records in RAM.
INFO	2026-06-08 08:40:30	MarkDuplicates	Read    12,000,000 records.  Elapsed time: 00:00:24s.  Time for last 1,000,000:    1s.  Last read position: chr1:22,660,964
INFO	2026-06-08 08:40:30	MarkDuplicates	Tracking 35395 as yet unmatched pairs. 5805 records in RAM.
INFO	2026-06-08 08:40:31	MarkDuplicates	Read    13,000,000 records.  Elapsed time: 00:00:25s.  Time for last 1,000,000:    1s.  Last read position: chr1:24,669,453
INFO	2026-06-08 08:40:31	MarkDuplicates	Tracking 32191 as yet unmatched pairs. 325 records in RAM.
INFO	2026-06-08 08:40:33	MarkDuplicates	Read    14,000,000 records.  Elapsed time: 00:00:27s.  Time for last 1,000,000:    1s.  Last read position: chr1:26,774,975
INFO	2026-06-08 08:40:33	MarkDuplicates	Tracking 34861 as yet unmatched pairs. 732 records in RAM.
INFO	2026-06-08 08:40:35	MarkDuplicates	Read    15,000,000 records.  Elapsed time: 00:00:29s.  Time for last 1,000,000:    1s.  Last read position: chr1:27,882,573
INFO	2026-06-08 08:40:35	MarkDuplicates	Tracking 37315 as yet unmatched pairs. 397 records in RAM.
INFO	2026-06-08 08:40:36	MarkDuplicates	Read    16,000,000 records.  Elapsed time: 00:00:30s.  Time for last 1,000,000:    1s.  Last read position: chr1:31,584,896
INFO	2026-06-08 08:40:36	MarkDuplicates	Tracking 39706 as yet unmatched pairs. 404 records in RAM.
INFO	2026-06-08 08:40:39	MarkDuplicates	Read    17,000,000 records.  Elapsed time: 00:00:33s.  Time for last 1,000,000:    2s.  Last read position: chr1:32,826,159
INFO	2026-06-08 08:40:39	MarkDuplicates	Tracking 41873 as yet unmatched pairs. 122 records in RAM.
INFO	2026-06-08 08:40:41	MarkDuplicates	Read    18,000,000 records.  Elapsed time: 00:00:35s.  Time for last 1,000,000:    1s.  Last read position: chr1:35,931,263
INFO	2026-06-08 08:40:41	MarkDuplicates	Tracking 44411 as yet unmatched pairs. 256 records in RAM.
INFO	2026-06-08 08:40:43	MarkDuplicates	Read    19,000,000 records.  Elapsed time: 00:00:37s.  Time for last 1,000,000:    2s.  Last read position: chr1:39,205,087
INFO	2026-06-08 08:40:43	MarkDuplicates	Tracking 46970 as yet unmatched pairs. 334 records in RAM.
INFO	2026-06-08 08:40:45	MarkDuplicates	Read    20,000,000 records.  Elapsed time: 00:00:39s.  Time for last 1,000,000:    1s.  Last read position: chr1:40,071,452
INFO	2026-06-08 08:40:45	MarkDuplicates	Tracking 49043 as yet unmatched pairs. 279 records in RAM.
INFO	2026-06-08 08:40:47	MarkDuplicates	Read    21,000,000 records.  Elapsed time: 00:00:41s.  Time for last 1,000,000:    1s.  Last read position: chr1:42,958,619
INFO	2026-06-08 08:40:47	MarkDuplicates	Tracking 51956 as yet unmatched pairs. 874 records in RAM.
INFO	2026-06-08 08:40:49	MarkDuplicates	Read    22,000,000 records.  Elapsed time: 00:00:43s.  Time for last 1,000,000:    2s.  Last read position: chr1:43,967,419
INFO	2026-06-08 08:40:49	MarkDuplicates	Tracking 53693 as yet unmatched pairs. 212 records in RAM.
INFO	2026-06-08 08:40:51	MarkDuplicates	Read    23,000,000 records.  Elapsed time: 00:00:45s.  Time for last 1,000,000:    2s.  Last read position: chr1:46,196,981
INFO	2026-06-08 08:40:51	MarkDuplicates	Tracking 56013 as yet unmatched pairs. 255 records in RAM.
INFO	2026-06-08 08:40:53	MarkDuplicates	Read    24,000,000 records.  Elapsed time: 00:00:47s.  Time for last 1,000,000:    1s.  Last read position: chr1:53,796,782
INFO	2026-06-08 08:40:53	MarkDuplicates	Tracking 58095 as yet unmatched pairs. 68 records in RAM.
INFO	2026-06-08 08:40:55	MarkDuplicates	Read    25,000,000 records.  Elapsed time: 00:00:49s.  Time for last 1,000,000:    1s.  Last read position: chr1:66,986,421
INFO	2026-06-08 08:40:55	MarkDuplicates	Tracking 60359 as yet unmatched pairs. 68 records in RAM.
INFO	2026-06-08 08:40:57	MarkDuplicates	Read    26,000,000 records.  Elapsed time: 00:00:51s.  Time for last 1,000,000:    2s.  Last read position: chr1:92,182,268
INFO	2026-06-08 08:40:57	MarkDuplicates	Tracking 62527 as yet unmatched pairs. 33 records in RAM.
INFO	2026-06-08 08:40:59	MarkDuplicates	Read    27,000,000 records.  Elapsed time: 00:00:52s.  Time for last 1,000,000:    1s.  Last read position: chr1:100,504,857
INFO	2026-06-08 08:40:59	MarkDuplicates	Tracking 64683 as yet unmatched pairs. 45 records in RAM.
INFO	2026-06-08 08:41:01	MarkDuplicates	Read    28,000,000 records.  Elapsed time: 00:00:54s.  Time for last 1,000,000:    1s.  Last read position: chr1:110,403,987
INFO	2026-06-08 08:41:01	MarkDuplicates	Tracking 67529 as yet unmatched pairs. 396 records in RAM.
INFO	2026-06-08 08:41:03	MarkDuplicates	Read    29,000,000 records.  Elapsed time: 00:00:56s.  Time for last 1,000,000:    2s.  Last read position: chr1:114,718,068
INFO	2026-06-08 08:41:03	MarkDuplicates	Tracking 69779 as yet unmatched pairs. 464 records in RAM.
INFO	2026-06-08 08:41:04	MarkDuplicates	Read    30,000,000 records.  Elapsed time: 00:00:58s.  Time for last 1,000,000:    1s.  Last read position: chr1:119,925,448
INFO	2026-06-08 08:41:04	MarkDuplicates	Tracking 72405 as yet unmatched pairs. 848 records in RAM.
INFO	2026-06-08 08:41:05	MarkDuplicates	Read    31,000,000 records.  Elapsed time: 00:00:59s.  Time for last 1,000,000:    1s.  Last read position: chr1:144,427,948
INFO	2026-06-08 08:41:05	MarkDuplicates	Tracking 73177 as yet unmatched pairs. 142 records in RAM.
INFO	2026-06-08 08:41:07	MarkDuplicates	Read    32,000,000 records.  Elapsed time: 00:01:01s.  Time for last 1,000,000:    1s.  Last read position: chr1:146,156,695
INFO	2026-06-08 08:41:07	MarkDuplicates	Tracking 74804 as yet unmatched pairs. 496 records in RAM.
INFO	2026-06-08 08:41:08	MarkDuplicates	Read    33,000,000 records.  Elapsed time: 00:01:02s.  Time for last 1,000,000:    1s.  Last read position: chr1:148,607,600
INFO	2026-06-08 08:41:08	MarkDuplicates	Tracking 75425 as yet unmatched pairs. 222 records in RAM.
INFO	2026-06-08 08:41:09	MarkDuplicates	Read    34,000,000 records.  Elapsed time: 00:01:03s.  Time for last 1,000,000:    1s.  Last read position: chr1:149,851,126
INFO	2026-06-08 08:41:09	MarkDuplicates	Tracking 76582 as yet unmatched pairs. 73 records in RAM.
INFO	2026-06-08 08:41:11	MarkDuplicates	Read    35,000,000 records.  Elapsed time: 00:01:05s.  Time for last 1,000,000:    1s.  Last read position: chr1:150,578,843
INFO	2026-06-08 08:41:11	MarkDuplicates	Tracking 79421 as yet unmatched pairs. 1108 records in RAM.
INFO	2026-06-08 08:41:13	MarkDuplicates	Read    36,000,000 records.  Elapsed time: 00:01:07s.  Time for last 1,000,000:    2s.  Last read position: chr1:151,406,252
INFO	2026-06-08 08:41:13	MarkDuplicates	Tracking 80845 as yet unmatched pairs. 195 records in RAM.
INFO	2026-06-08 08:41:15	MarkDuplicates	Read    37,000,000 records.  Elapsed time: 00:01:09s.  Time for last 1,000,000:    1s.  Last read position: chr1:153,932,351
INFO	2026-06-08 08:41:15	MarkDuplicates	Tracking 83310 as yet unmatched pairs. 539 records in RAM.
INFO	2026-06-08 08:41:17	MarkDuplicates	Read    38,000,000 records.  Elapsed time: 00:01:10s.  Time for last 1,000,000:    1s.  Last read position: chr1:154,251,172
INFO	2026-06-08 08:41:17	MarkDuplicates	Tracking 85272 as yet unmatched pairs. 327 records in RAM.
INFO	2026-06-08 08:41:19	MarkDuplicates	Read    39,000,000 records.  Elapsed time: 00:01:12s.  Time for last 1,000,000:    1s.  Last read position: chr1:155,052,674
INFO	2026-06-08 08:41:19	MarkDuplicates	Tracking 88201 as yet unmatched pairs. 892 records in RAM.
INFO	2026-06-08 08:41:21	MarkDuplicates	Read    40,000,000 records.  Elapsed time: 00:01:15s.  Time for last 1,000,000:    2s.  Last read position: chr1:155,325,382
INFO	2026-06-08 08:41:21	MarkDuplicates	Tracking 89580 as yet unmatched pairs. 133 records in RAM.
INFO	2026-06-08 08:41:22	MarkDuplicates	Read    41,000,000 records.  Elapsed time: 00:01:16s.  Time for last 1,000,000:    1s.  Last read position: chr1:156,115,018
INFO	2026-06-08 08:41:22	MarkDuplicates	Tracking 92899 as yet unmatched pairs. 1300 records in RAM.
INFO	2026-06-08 08:41:24	MarkDuplicates	Read    42,000,000 records.  Elapsed time: 00:01:18s.  Time for last 1,000,000:    1s.  Last read position: chr1:156,550,272
INFO	2026-06-08 08:41:24	MarkDuplicates	Tracking 94424 as yet unmatched pairs. 167 records in RAM.
INFO	2026-06-08 08:41:25	MarkDuplicates	Read    43,000,000 records.  Elapsed time: 00:01:19s.  Time for last 1,000,000:    1s.  Last read position: chr1:159,049,515
INFO	2026-06-08 08:41:25	MarkDuplicates	Tracking 96920 as yet unmatched pairs. 218 records in RAM.
INFO	2026-06-08 08:41:27	MarkDuplicates	Read    44,000,000 records.  Elapsed time: 00:01:21s.  Time for last 1,000,000:    1s.  Last read position: chr1:161,158,172
INFO	2026-06-08 08:41:27	MarkDuplicates	Tracking 99166 as yet unmatched pairs. 255 records in RAM.
INFO	2026-06-08 08:41:28	MarkDuplicates	Read    45,000,000 records.  Elapsed time: 00:01:22s.  Time for last 1,000,000:    1s.  Last read position: chr1:166,277,280
INFO	2026-06-08 08:41:28	MarkDuplicates	Tracking 100982 as yet unmatched pairs. 12 records in RAM.
INFO	2026-06-08 08:41:30	MarkDuplicates	Read    46,000,000 records.  Elapsed time: 00:01:24s.  Time for last 1,000,000:    2s.  Last read position: chr1:171,584,117
INFO	2026-06-08 08:41:30	MarkDuplicates	Tracking 103544 as yet unmatched pairs. 411 records in RAM.
INFO	2026-06-08 08:41:33	MarkDuplicates	Read    47,000,000 records.  Elapsed time: 00:01:26s.  Time for last 1,000,000:    2s.  Last read position: chr1:180,916,819
INFO	2026-06-08 08:41:33	MarkDuplicates	Tracking 105136 as yet unmatched pairs. 15 records in RAM.
INFO	2026-06-08 08:41:35	MarkDuplicates	Read    48,000,000 records.  Elapsed time: 00:01:28s.  Time for last 1,000,000:    1s.  Last read position: chr1:183,140,405
INFO	2026-06-08 08:41:35	MarkDuplicates	Tracking 108343 as yet unmatched pairs. 901 records in RAM.
INFO	2026-06-08 08:41:36	MarkDuplicates	Read    49,000,000 records.  Elapsed time: 00:01:30s.  Time for last 1,000,000:    1s.  Last read position: chr1:183,847,764
INFO	2026-06-08 08:41:36	MarkDuplicates	Tracking 109852 as yet unmatched pairs. 75 records in RAM.
INFO	2026-06-08 08:41:38	MarkDuplicates	Read    50,000,000 records.  Elapsed time: 00:01:32s.  Time for last 1,000,000:    1s.  Last read position: chr1:200,409,282
INFO	2026-06-08 08:41:38	MarkDuplicates	Tracking 112382 as yet unmatched pairs. 597 records in RAM.
INFO	2026-06-08 08:41:39	MarkDuplicates	Read    51,000,000 records.  Elapsed time: 00:01:33s.  Time for last 1,000,000:    1s.  Last read position: chr1:202,943,796
INFO	2026-06-08 08:41:39	MarkDuplicates	Tracking 115036 as yet unmatched pairs. 854 records in RAM.
INFO	2026-06-08 08:41:41	MarkDuplicates	Read    52,000,000 records.  Elapsed time: 00:01:35s.  Time for last 1,000,000:    1s.  Last read position: chr1:204,617,964
INFO	2026-06-08 08:41:41	MarkDuplicates	Tracking 116330 as yet unmatched pairs. 8 records in RAM.
INFO	2026-06-08 08:41:42	MarkDuplicates	Read    53,000,000 records.  Elapsed time: 00:01:36s.  Time for last 1,000,000:    1s.  Last read position: chr1:206,731,892
INFO	2026-06-08 08:41:42	MarkDuplicates	Tracking 119270 as yet unmatched pairs. 622 records in RAM.
INFO	2026-06-08 08:41:43	MarkDuplicates	Read    54,000,000 records.  Elapsed time: 00:01:37s.  Time for last 1,000,000:    1s.  Last read position: chr1:209,638,616
INFO	2026-06-08 08:41:43	MarkDuplicates	Tracking 122023 as yet unmatched pairs. 1246 records in RAM.
INFO	2026-06-08 08:41:46	MarkDuplicates	Read    55,000,000 records.  Elapsed time: 00:01:39s.  Time for last 1,000,000:    2s.  Last read position: chr1:220,094,349
INFO	2026-06-08 08:41:46	MarkDuplicates	Tracking 124045 as yet unmatched pairs. 833 records in RAM.
INFO	2026-06-08 08:41:47	MarkDuplicates	Read    56,000,000 records.  Elapsed time: 00:01:41s.  Time for last 1,000,000:    1s.  Last read position: chr1:224,433,815
INFO	2026-06-08 08:41:47	MarkDuplicates	Tracking 126942 as yet unmatched pairs. 1477 records in RAM.
INFO	2026-06-08 08:41:49	MarkDuplicates	Read    57,000,000 records.  Elapsed time: 00:01:42s.  Time for last 1,000,000:    1s.  Last read position: chr1:228,102,496
INFO	2026-06-08 08:41:49	MarkDuplicates	Tracking 127810 as yet unmatched pairs. 89 records in RAM.
INFO	2026-06-08 08:41:50	MarkDuplicates	Read    58,000,000 records.  Elapsed time: 00:01:44s.  Time for last 1,000,000:    1s.  Last read position: chr1:229,659,178
INFO	2026-06-08 08:41:50	MarkDuplicates	Tracking 130654 as yet unmatched pairs. 59 records in RAM.
INFO	2026-06-08 08:41:52	MarkDuplicates	Read    59,000,000 records.  Elapsed time: 00:01:46s.  Time for last 1,000,000:    1s.  Last read position: chr1:236,269,892
INFO	2026-06-08 08:41:52	MarkDuplicates	Tracking 133242 as yet unmatched pairs. 20 records in RAM.
INFO	2026-06-08 08:41:53	MarkDuplicates	Read    60,000,000 records.  Elapsed time: 00:01:47s.  Time for last 1,000,000:    1s.  Last read position: chr1:246,902,551
INFO	2026-06-08 08:41:53	MarkDuplicates	Tracking 135497 as yet unmatched pairs. 63 records in RAM.
INFO	2026-06-08 08:41:56	MarkDuplicates	Read    61,000,000 records.  Elapsed time: 00:01:50s.  Time for last 1,000,000:    2s.  Last read position: chr2:9,868,321
INFO	2026-06-08 08:41:56	MarkDuplicates	Tracking 137782 as yet unmatched pairs. 137542 records in RAM.
INFO	2026-06-08 08:41:58	MarkDuplicates	Read    62,000,000 records.  Elapsed time: 00:01:52s.  Time for last 1,000,000:    2s.  Last read position: chr2:23,384,938
INFO	2026-06-08 08:41:58	MarkDuplicates	Tracking 140033 as yet unmatched pairs. 139790 records in RAM.
INFO	2026-06-08 08:42:00	MarkDuplicates	Read    63,000,000 records.  Elapsed time: 00:01:54s.  Time for last 1,000,000:    1s.  Last read position: chr2:26,792,780
INFO	2026-06-08 08:42:00	MarkDuplicates	Tracking 142369 as yet unmatched pairs. 142125 records in RAM.
INFO	2026-06-08 08:42:02	MarkDuplicates	Read    64,000,000 records.  Elapsed time: 00:01:56s.  Time for last 1,000,000:    2s.  Last read position: chr2:27,661,098
INFO	2026-06-08 08:42:02	MarkDuplicates	Tracking 145302 as yet unmatched pairs. 145056 records in RAM.
INFO	2026-06-08 08:42:04	MarkDuplicates	Read    65,000,000 records.  Elapsed time: 00:01:58s.  Time for last 1,000,000:    2s.  Last read position: chr2:32,509,801
INFO	2026-06-08 08:42:04	MarkDuplicates	Tracking 147427 as yet unmatched pairs. 147177 records in RAM.
INFO	2026-06-08 08:42:06	MarkDuplicates	Read    66,000,000 records.  Elapsed time: 00:02:00s.  Time for last 1,000,000:    1s.  Last read position: chr2:32,916,264
INFO	2026-06-08 08:42:06	MarkDuplicates	Tracking 465980 as yet unmatched pairs. 129216 records in RAM.
INFO	2026-06-08 08:42:09	MarkDuplicates	Read    67,000,000 records.  Elapsed time: 00:02:03s.  Time for last 1,000,000:    2s.  Last read position: chr2:32,916,264
INFO	2026-06-08 08:42:09	MarkDuplicates	Tracking 1120562 as yet unmatched pairs. 92157 records in RAM.
INFO	2026-06-08 08:42:10	MarkDuplicates	Read    68,000,000 records.  Elapsed time: 00:02:04s.  Time for last 1,000,000:    1s.  Last read position: chr2:32,916,406
INFO	2026-06-08 08:42:10	MarkDuplicates	Tracking 1229418 as yet unmatched pairs. 86474 records in RAM.
INFO	2026-06-08 08:42:12	MarkDuplicates	Read    69,000,000 records.  Elapsed time: 00:02:05s.  Time for last 1,000,000:    1s.  Last read position: chr2:32,916,426
INFO	2026-06-08 08:42:12	MarkDuplicates	Tracking 1301395 as yet unmatched pairs. 82720 records in RAM.
INFO	2026-06-08 08:42:13	MarkDuplicates	Read    70,000,000 records.  Elapsed time: 00:02:07s.  Time for last 1,000,000:    1s.  Last read position: chr2:42,328,913
INFO	2026-06-08 08:42:13	MarkDuplicates	Tracking 1312150 as yet unmatched pairs. 80225 records in RAM.
INFO	2026-06-08 08:42:15	MarkDuplicates	Read    71,000,000 records.  Elapsed time: 00:02:09s.  Time for last 1,000,000:    1s.  Last read position: chr2:47,024,301
INFO	2026-06-08 08:42:15	MarkDuplicates	Tracking 1309723 as yet unmatched pairs. 77790 records in RAM.
INFO	2026-06-08 08:42:17	MarkDuplicates	Read    72,000,000 records.  Elapsed time: 00:02:10s.  Time for last 1,000,000:    1s.  Last read position: chr2:55,049,806
INFO	2026-06-08 08:42:17	MarkDuplicates	Tracking 1309229 as yet unmatched pairs. 77295 records in RAM.
INFO	2026-06-08 08:42:18	MarkDuplicates	Read    73,000,000 records.  Elapsed time: 00:02:12s.  Time for last 1,000,000:    1s.  Last read position: chr2:63,885,699
INFO	2026-06-08 08:42:18	MarkDuplicates	Tracking 1305313 as yet unmatched pairs. 73375 records in RAM.
INFO	2026-06-08 08:42:20	MarkDuplicates	Read    74,000,000 records.  Elapsed time: 00:02:14s.  Time for last 1,000,000:    1s.  Last read position: chr2:71,076,626
INFO	2026-06-08 08:42:20	MarkDuplicates	Tracking 1303092 as yet unmatched pairs. 71154 records in RAM.
INFO	2026-06-08 08:42:21	MarkDuplicates	Read    75,000,000 records.  Elapsed time: 00:02:15s.  Time for last 1,000,000:    1s.  Last read position: chr2:74,369,367
INFO	2026-06-08 08:42:21	MarkDuplicates	Tracking 1300701 as yet unmatched pairs. 68761 records in RAM.
INFO	2026-06-08 08:42:23	MarkDuplicates	Read    76,000,000 records.  Elapsed time: 00:02:17s.  Time for last 1,000,000:    1s.  Last read position: chr2:85,035,032
INFO	2026-06-08 08:42:23	MarkDuplicates	Tracking 1298336 as yet unmatched pairs. 66393 records in RAM.
INFO	2026-06-08 08:42:25	MarkDuplicates	Read    77,000,000 records.  Elapsed time: 00:02:19s.  Time for last 1,000,000:    1s.  Last read position: chr2:87,719,954
INFO	2026-06-08 08:42:25	MarkDuplicates	Tracking 1296092 as yet unmatched pairs. 64144 records in RAM.
INFO	2026-06-08 08:42:26	MarkDuplicates	Read    78,000,000 records.  Elapsed time: 00:02:20s.  Time for last 1,000,000:    1s.  Last read position: chr2:95,279,006
INFO	2026-06-08 08:42:26	MarkDuplicates	Tracking 1294808 as yet unmatched pairs. 62860 records in RAM.
INFO	2026-06-08 08:42:28	MarkDuplicates	Read    79,000,000 records.  Elapsed time: 00:02:22s.  Time for last 1,000,000:    1s.  Last read position: chr2:96,865,704
INFO	2026-06-08 08:42:28	MarkDuplicates	Tracking 1292075 as yet unmatched pairs. 60127 records in RAM.
INFO	2026-06-08 08:42:29	MarkDuplicates	Read    80,000,000 records.  Elapsed time: 00:02:23s.  Time for last 1,000,000:    1s.  Last read position: chr2:101,825,318
INFO	2026-06-08 08:42:29	MarkDuplicates	Tracking 1289816 as yet unmatched pairs. 57865 records in RAM.
INFO	2026-06-08 08:42:32	MarkDuplicates	Read    81,000,000 records.  Elapsed time: 00:02:25s.  Time for last 1,000,000:    2s.  Last read position: chr2:108,763,854
INFO	2026-06-08 08:42:32	MarkDuplicates	Tracking 1288017 as yet unmatched pairs. 56064 records in RAM.
INFO	2026-06-08 08:42:33	MarkDuplicates	Read    82,000,000 records.  Elapsed time: 00:02:27s.  Time for last 1,000,000:    1s.  Last read position: chr2:111,794,116
INFO	2026-06-08 08:42:33	MarkDuplicates	Tracking 1286441 as yet unmatched pairs. 54485 records in RAM.
INFO	2026-06-08 08:42:35	MarkDuplicates	Read    83,000,000 records.  Elapsed time: 00:02:28s.  Time for last 1,000,000:    1s.  Last read position: chr2:113,218,058
INFO	2026-06-08 08:42:35	MarkDuplicates	Tracking 1287342 as yet unmatched pairs. 55384 records in RAM.
INFO	2026-06-08 08:42:36	MarkDuplicates	Read    84,000,000 records.  Elapsed time: 00:02:30s.  Time for last 1,000,000:    1s.  Last read position: chr2:113,242,701
INFO	2026-06-08 08:42:36	MarkDuplicates	Tracking 1287737 as yet unmatched pairs. 55779 records in RAM.
INFO	2026-06-08 08:42:38	MarkDuplicates	Read    85,000,000 records.  Elapsed time: 00:02:32s.  Time for last 1,000,000:    1s.  Last read position: chr2:121,365,094
INFO	2026-06-08 08:42:38	MarkDuplicates	Tracking 1279498 as yet unmatched pairs. 47540 records in RAM.
INFO	2026-06-08 08:42:39	MarkDuplicates	Read    86,000,000 records.  Elapsed time: 00:02:33s.  Time for last 1,000,000:    1s.  Last read position: chr2:130,190,560
INFO	2026-06-08 08:42:39	MarkDuplicates	Tracking 1277172 as yet unmatched pairs. 45212 records in RAM.
INFO	2026-06-08 08:42:41	MarkDuplicates	Read    87,000,000 records.  Elapsed time: 00:02:35s.  Time for last 1,000,000:    1s.  Last read position: chr2:135,851,461
INFO	2026-06-08 08:42:41	MarkDuplicates	Tracking 1274953 as yet unmatched pairs. 42991 records in RAM.
INFO	2026-06-08 08:42:43	MarkDuplicates	Read    88,000,000 records.  Elapsed time: 00:02:37s.  Time for last 1,000,000:    2s.  Last read position: chr2:159,759,240
INFO	2026-06-08 08:42:43	MarkDuplicates	Tracking 1272992 as yet unmatched pairs. 41029 records in RAM.
INFO	2026-06-08 08:42:45	MarkDuplicates	Read    89,000,000 records.  Elapsed time: 00:02:39s.  Time for last 1,000,000:    1s.  Last read position: chr2:173,266,224
INFO	2026-06-08 08:42:45	MarkDuplicates	Tracking 1270630 as yet unmatched pairs. 38659 records in RAM.
INFO	2026-06-08 08:42:46	MarkDuplicates	Read    90,000,000 records.  Elapsed time: 00:02:40s.  Time for last 1,000,000:    1s.  Last read position: chr2:182,728,634
INFO	2026-06-08 08:42:46	MarkDuplicates	Tracking 1268672 as yet unmatched pairs. 36701 records in RAM.
INFO	2026-06-08 08:42:48	MarkDuplicates	Read    91,000,000 records.  Elapsed time: 00:02:42s.  Time for last 1,000,000:    1s.  Last read position: chr2:189,010,249
INFO	2026-06-08 08:42:48	MarkDuplicates	Tracking 1266420 as yet unmatched pairs. 34448 records in RAM.
INFO	2026-06-08 08:42:51	MarkDuplicates	Read    92,000,000 records.  Elapsed time: 00:02:44s.  Time for last 1,000,000:    2s.  Last read position: chr2:196,512,859
INFO	2026-06-08 08:42:51	MarkDuplicates	Tracking 1263348 as yet unmatched pairs. 31376 records in RAM.
INFO	2026-06-08 08:42:52	MarkDuplicates	Read    93,000,000 records.  Elapsed time: 00:02:46s.  Time for last 1,000,000:    1s.  Last read position: chr2:203,439,821
INFO	2026-06-08 08:42:52	MarkDuplicates	Tracking 1261397 as yet unmatched pairs. 29417 records in RAM.
INFO	2026-06-08 08:42:54	MarkDuplicates	Read    94,000,000 records.  Elapsed time: 00:02:48s.  Time for last 1,000,000:    2s.  Last read position: chr2:215,362,057
INFO	2026-06-08 08:42:54	MarkDuplicates	Tracking 1264876 as yet unmatched pairs. 32895 records in RAM.
INFO	2026-06-08 08:42:56	MarkDuplicates	Read    95,000,000 records.  Elapsed time: 00:02:50s.  Time for last 1,000,000:    1s.  Last read position: chr2:215,372,357
INFO	2026-06-08 08:42:56	MarkDuplicates	Tracking 1263186 as yet unmatched pairs. 31198 records in RAM.
INFO	2026-06-08 08:42:58	MarkDuplicates	Read    96,000,000 records.  Elapsed time: 00:02:52s.  Time for last 1,000,000:    1s.  Last read position: chr2:215,379,263
INFO	2026-06-08 08:42:58	MarkDuplicates	Tracking 1263469 as yet unmatched pairs. 31480 records in RAM.
INFO	2026-06-08 08:43:00	MarkDuplicates	Read    97,000,000 records.  Elapsed time: 00:02:53s.  Time for last 1,000,000:    1s.  Last read position: chr2:215,394,604
INFO	2026-06-08 08:43:00	MarkDuplicates	Tracking 1254860 as yet unmatched pairs. 22867 records in RAM.
INFO	2026-06-08 08:43:01	MarkDuplicates	Read    98,000,000 records.  Elapsed time: 00:02:55s.  Time for last 1,000,000:    1s.  Last read position: chr2:215,408,182
INFO	2026-06-08 08:43:01	MarkDuplicates	Tracking 1257820 as yet unmatched pairs. 25827 records in RAM.
INFO	2026-06-08 08:43:03	MarkDuplicates	Read    99,000,000 records.  Elapsed time: 00:02:57s.  Time for last 1,000,000:    1s.  Last read position: chr2:215,424,290
INFO	2026-06-08 08:43:03	MarkDuplicates	Tracking 1254770 as yet unmatched pairs. 22777 records in RAM.
INFO	2026-06-08 08:43:05	MarkDuplicates	Read   100,000,000 records.  Elapsed time: 00:02:58s.  Time for last 1,000,000:    1s.  Last read position: chr2:216,435,347
INFO	2026-06-08 08:43:05	MarkDuplicates	Tracking 1246654 as yet unmatched pairs. 14660 records in RAM.
INFO	2026-06-08 08:43:06	MarkDuplicates	Read   101,000,000 records.  Elapsed time: 00:03:00s.  Time for last 1,000,000:    1s.  Last read position: chr2:218,638,360
INFO	2026-06-08 08:43:06	MarkDuplicates	Tracking 1244387 as yet unmatched pairs. 12393 records in RAM.
INFO	2026-06-08 08:43:08	MarkDuplicates	Read   102,000,000 records.  Elapsed time: 00:03:02s.  Time for last 1,000,000:    1s.  Last read position: chr2:219,562,633
INFO	2026-06-08 08:43:08	MarkDuplicates	Tracking 1242153 as yet unmatched pairs. 10158 records in RAM.
INFO	2026-06-08 08:43:09	MarkDuplicates	Read   103,000,000 records.  Elapsed time: 00:03:03s.  Time for last 1,000,000:    1s.  Last read position: chr2:231,455,136
INFO	2026-06-08 08:43:09	MarkDuplicates	Tracking 1240094 as yet unmatched pairs. 8064 records in RAM.
INFO	2026-06-08 08:43:11	MarkDuplicates	Read   104,000,000 records.  Elapsed time: 00:03:05s.  Time for last 1,000,000:    1s.  Last read position: chr2:237,336,266
INFO	2026-06-08 08:43:11	MarkDuplicates	Tracking 1238059 as yet unmatched pairs. 6027 records in RAM.
INFO	2026-06-08 08:43:13	MarkDuplicates	Read   105,000,000 records.  Elapsed time: 00:03:07s.  Time for last 1,000,000:    2s.  Last read position: chr2:238,194,308
INFO	2026-06-08 08:43:13	MarkDuplicates	Tracking 1235153 as yet unmatched pairs. 3120 records in RAM.
INFO	2026-06-08 08:43:14	MarkDuplicates	Read   106,000,000 records.  Elapsed time: 00:03:08s.  Time for last 1,000,000:    1s.  Last read position: chr2:241,496,405
INFO	2026-06-08 08:43:14	MarkDuplicates	Tracking 1233132 as yet unmatched pairs. 1088 records in RAM.
INFO	2026-06-08 08:43:16	MarkDuplicates	Read   107,000,000 records.  Elapsed time: 00:03:10s.  Time for last 1,000,000:    2s.  Last read position: chr3:9,743,744
INFO	2026-06-08 08:43:16	MarkDuplicates	Tracking 1230455 as yet unmatched pairs. 64158 records in RAM.
INFO	2026-06-08 08:43:18	MarkDuplicates	Read   108,000,000 records.  Elapsed time: 00:03:12s.  Time for last 1,000,000:    1s.  Last read position: chr3:12,611,999
INFO	2026-06-08 08:43:18	MarkDuplicates	Tracking 1228651 as yet unmatched pairs. 62339 records in RAM.
INFO	2026-06-08 08:43:20	MarkDuplicates	Read   109,000,000 records.  Elapsed time: 00:03:14s.  Time for last 1,000,000:    1s.  Last read position: chr3:15,859,413
INFO	2026-06-08 08:43:20	MarkDuplicates	Tracking 1225594 as yet unmatched pairs. 59262 records in RAM.
INFO	2026-06-08 08:43:22	MarkDuplicates	Read   110,000,000 records.  Elapsed time: 00:03:15s.  Time for last 1,000,000:    1s.  Last read position: chr3:36,831,504
INFO	2026-06-08 08:43:22	MarkDuplicates	Tracking 1223564 as yet unmatched pairs. 57229 records in RAM.
INFO	2026-06-08 08:43:23	MarkDuplicates	Read   111,000,000 records.  Elapsed time: 00:03:17s.  Time for last 1,000,000:    1s.  Last read position: chr3:41,236,594
INFO	2026-06-08 08:43:23	MarkDuplicates	Tracking 1221395 as yet unmatched pairs. 55059 records in RAM.
INFO	2026-06-08 08:43:25	MarkDuplicates	Read   112,000,000 records.  Elapsed time: 00:03:18s.  Time for last 1,000,000:    1s.  Last read position: chr3:46,989,306
INFO	2026-06-08 08:43:25	MarkDuplicates	Tracking 1219277 as yet unmatched pairs. 52937 records in RAM.
INFO	2026-06-08 08:43:26	MarkDuplicates	Read   113,000,000 records.  Elapsed time: 00:03:20s.  Time for last 1,000,000:    1s.  Last read position: chr3:47,875,755
INFO	2026-06-08 08:43:26	MarkDuplicates	Tracking 1216988 as yet unmatched pairs. 50648 records in RAM.
INFO	2026-06-08 08:43:28	MarkDuplicates	Read   114,000,000 records.  Elapsed time: 00:03:22s.  Time for last 1,000,000:    1s.  Last read position: chr3:49,011,748
INFO	2026-06-08 08:43:28	MarkDuplicates	Tracking 1214192 as yet unmatched pairs. 47841 records in RAM.
INFO	2026-06-08 08:43:30	MarkDuplicates	Read   115,000,000 records.  Elapsed time: 00:03:23s.  Time for last 1,000,000:    1s.  Last read position: chr3:49,358,048
INFO	2026-06-08 08:43:30	MarkDuplicates	Tracking 1212345 as yet unmatched pairs. 45989 records in RAM.
INFO	2026-06-08 08:43:31	MarkDuplicates	Read   116,000,000 records.  Elapsed time: 00:03:25s.  Time for last 1,000,000:    1s.  Last read position: chr3:50,236,315
INFO	2026-06-08 08:43:31	MarkDuplicates	Tracking 1209396 as yet unmatched pairs. 43038 records in RAM.
INFO	2026-06-08 08:43:33	MarkDuplicates	Read   117,000,000 records.  Elapsed time: 00:03:27s.  Time for last 1,000,000:    2s.  Last read position: chr3:52,245,851
INFO	2026-06-08 08:43:33	MarkDuplicates	Tracking 1207000 as yet unmatched pairs. 40642 records in RAM.
INFO	2026-06-08 08:43:35	MarkDuplicates	Read   118,000,000 records.  Elapsed time: 00:03:29s.  Time for last 1,000,000:    1s.  Last read position: chr3:52,523,464
INFO	2026-06-08 08:43:35	MarkDuplicates	Tracking 1205319 as yet unmatched pairs. 38956 records in RAM.
INFO	2026-06-08 08:43:36	MarkDuplicates	Read   119,000,000 records.  Elapsed time: 00:03:30s.  Time for last 1,000,000:    1s.  Last read position: chr3:58,112,081
INFO	2026-06-08 08:43:36	MarkDuplicates	Tracking 1202457 as yet unmatched pairs. 36080 records in RAM.
INFO	2026-06-08 08:43:38	MarkDuplicates	Read   120,000,000 records.  Elapsed time: 00:03:32s.  Time for last 1,000,000:    1s.  Last read position: chr3:75,214,533
INFO	2026-06-08 08:43:38	MarkDuplicates	Tracking 1200052 as yet unmatched pairs. 33659 records in RAM.
INFO	2026-06-08 08:43:40	MarkDuplicates	Read   121,000,000 records.  Elapsed time: 00:03:34s.  Time for last 1,000,000:    1s.  Last read position: chr3:107,728,889
INFO	2026-06-08 08:43:40	MarkDuplicates	Tracking 1198105 as yet unmatched pairs. 31712 records in RAM.
INFO	2026-06-08 08:43:41	MarkDuplicates	Read   122,000,000 records.  Elapsed time: 00:03:35s.  Time for last 1,000,000:    1s.  Last read position: chr3:121,657,291
INFO	2026-06-08 08:43:41	MarkDuplicates	Tracking 1196373 as yet unmatched pairs. 29978 records in RAM.
INFO	2026-06-08 08:43:43	MarkDuplicates	Read   123,000,000 records.  Elapsed time: 00:03:36s.  Time for last 1,000,000:    1s.  Last read position: chr3:123,915,372
INFO	2026-06-08 08:43:43	MarkDuplicates	Tracking 1193830 as yet unmatched pairs. 27434 records in RAM.
INFO	2026-06-08 08:43:44	MarkDuplicates	Read   124,000,000 records.  Elapsed time: 00:03:38s.  Time for last 1,000,000:    1s.  Last read position: chr3:127,679,983
INFO	2026-06-08 08:43:44	MarkDuplicates	Tracking 1191177 as yet unmatched pairs. 24781 records in RAM.
INFO	2026-06-08 08:43:46	MarkDuplicates	Read   125,000,000 records.  Elapsed time: 00:03:40s.  Time for last 1,000,000:    1s.  Last read position: chr3:129,562,869
INFO	2026-06-08 08:43:46	MarkDuplicates	Tracking 1189187 as yet unmatched pairs. 22791 records in RAM.
INFO	2026-06-08 08:43:48	MarkDuplicates	Read   126,000,000 records.  Elapsed time: 00:03:41s.  Time for last 1,000,000:    1s.  Last read position: chr3:134,367,551
INFO	2026-06-08 08:43:48	MarkDuplicates	Tracking 1186593 as yet unmatched pairs. 20181 records in RAM.
INFO	2026-06-08 08:43:49	MarkDuplicates	Read   127,000,000 records.  Elapsed time: 00:03:43s.  Time for last 1,000,000:    1s.  Last read position: chr3:143,578,714
INFO	2026-06-08 08:43:49	MarkDuplicates	Tracking 1184094 as yet unmatched pairs. 17682 records in RAM.
INFO	2026-06-08 08:43:51	MarkDuplicates	Read   128,000,000 records.  Elapsed time: 00:03:45s.  Time for last 1,000,000:    1s.  Last read position: chr3:155,168,732
INFO	2026-06-08 08:43:51	MarkDuplicates	Tracking 1181500 as yet unmatched pairs. 15087 records in RAM.
INFO	2026-06-08 08:43:53	MarkDuplicates	Read   129,000,000 records.  Elapsed time: 00:03:46s.  Time for last 1,000,000:    1s.  Last read position: chr3:172,247,648
INFO	2026-06-08 08:43:53	MarkDuplicates	Tracking 1179713 as yet unmatched pairs. 13294 records in RAM.
INFO	2026-06-08 08:43:54	MarkDuplicates	Read   130,000,000 records.  Elapsed time: 00:03:48s.  Time for last 1,000,000:    1s.  Last read position: chr3:184,142,271
INFO	2026-06-08 08:43:54	MarkDuplicates	Tracking 1177334 as yet unmatched pairs. 10913 records in RAM.
INFO	2026-06-08 08:43:56	MarkDuplicates	Read   131,000,000 records.  Elapsed time: 00:03:50s.  Time for last 1,000,000:    2s.  Last read position: chr3:184,321,844
INFO	2026-06-08 08:43:56	MarkDuplicates	Tracking 1175709 as yet unmatched pairs. 9287 records in RAM.
INFO	2026-06-08 08:43:58	MarkDuplicates	Read   132,000,000 records.  Elapsed time: 00:03:52s.  Time for last 1,000,000:    1s.  Last read position: chr3:187,312,747
INFO	2026-06-08 08:43:58	MarkDuplicates	Tracking 1172656 as yet unmatched pairs. 6232 records in RAM.
INFO	2026-06-08 08:44:00	MarkDuplicates	Read   133,000,000 records.  Elapsed time: 00:03:54s.  Time for last 1,000,000:    1s.  Last read position: chr3:194,462,157
INFO	2026-06-08 08:44:00	MarkDuplicates	Tracking 1171246 as yet unmatched pairs. 4821 records in RAM.
INFO	2026-06-08 08:44:02	MarkDuplicates	Read   134,000,000 records.  Elapsed time: 00:03:55s.  Time for last 1,000,000:    1s.  Last read position: chr3:195,782,665
INFO	2026-06-08 08:44:02	MarkDuplicates	Tracking 1171620 as yet unmatched pairs. 5193 records in RAM.
INFO	2026-06-08 08:44:03	MarkDuplicates	Read   135,000,000 records.  Elapsed time: 00:03:57s.  Time for last 1,000,000:    1s.  Last read position: chr3:196,055,178
INFO	2026-06-08 08:44:03	MarkDuplicates	Tracking 1168621 as yet unmatched pairs. 2193 records in RAM.
INFO	2026-06-08 08:44:05	MarkDuplicates	Read   136,000,000 records.  Elapsed time: 00:03:59s.  Time for last 1,000,000:    1s.  Last read position: chr4:893,389
INFO	2026-06-08 08:44:05	MarkDuplicates	Tracking 1165926 as yet unmatched pairs. 22870 records in RAM.
INFO	2026-06-08 08:44:07	MarkDuplicates	Read   137,000,000 records.  Elapsed time: 00:04:00s.  Time for last 1,000,000:    1s.  Last read position: chr4:2,831,630
INFO	2026-06-08 08:44:07	MarkDuplicates	Tracking 1163491 as yet unmatched pairs. 20424 records in RAM.
INFO	2026-06-08 08:44:08	MarkDuplicates	Read   138,000,000 records.  Elapsed time: 00:04:02s.  Time for last 1,000,000:    1s.  Last read position: chr4:8,232,048
INFO	2026-06-08 08:44:08	MarkDuplicates	Tracking 1160933 as yet unmatched pairs. 17862 records in RAM.
INFO	2026-06-08 08:44:10	MarkDuplicates	Read   139,000,000 records.  Elapsed time: 00:04:03s.  Time for last 1,000,000:    1s.  Last read position: chr4:38,905,759
INFO	2026-06-08 08:44:10	MarkDuplicates	Tracking 1158797 as yet unmatched pairs. 15715 records in RAM.
INFO	2026-06-08 08:44:11	MarkDuplicates	Read   140,000,000 records.  Elapsed time: 00:04:05s.  Time for last 1,000,000:    1s.  Last read position: chr4:56,347,620
INFO	2026-06-08 08:44:11	MarkDuplicates	Tracking 1156391 as yet unmatched pairs. 13302 records in RAM.
INFO	2026-06-08 08:44:13	MarkDuplicates	Read   141,000,000 records.  Elapsed time: 00:04:07s.  Time for last 1,000,000:    1s.  Last read position: chr4:76,002,435
INFO	2026-06-08 08:44:13	MarkDuplicates	Tracking 1154659 as yet unmatched pairs. 11557 records in RAM.
INFO	2026-06-08 08:44:14	MarkDuplicates	Read   142,000,000 records.  Elapsed time: 00:04:08s.  Time for last 1,000,000:    1s.  Last read position: chr4:86,770,128
INFO	2026-06-08 08:44:14	MarkDuplicates	Tracking 1151808 as yet unmatched pairs. 8705 records in RAM.
INFO	2026-06-08 08:44:16	MarkDuplicates	Read   143,000,000 records.  Elapsed time: 00:04:10s.  Time for last 1,000,000:    1s.  Last read position: chr4:108,004,798
INFO	2026-06-08 08:44:16	MarkDuplicates	Tracking 1149799 as yet unmatched pairs. 6694 records in RAM.
INFO	2026-06-08 08:44:17	MarkDuplicates	Read   144,000,000 records.  Elapsed time: 00:04:11s.  Time for last 1,000,000:    1s.  Last read position: chr4:139,666,005
INFO	2026-06-08 08:44:17	MarkDuplicates	Tracking 1147809 as yet unmatched pairs. 4701 records in RAM.
INFO	2026-06-08 08:44:19	MarkDuplicates	Read   145,000,000 records.  Elapsed time: 00:04:13s.  Time for last 1,000,000:    1s.  Last read position: chr4:158,170,585
INFO	2026-06-08 08:44:19	MarkDuplicates	Tracking 1146175 as yet unmatched pairs. 3052 records in RAM.
INFO	2026-06-08 08:44:21	MarkDuplicates	Read   146,000,000 records.  Elapsed time: 00:04:14s.  Time for last 1,000,000:    1s.  Last read position: chr4:186,617,991
INFO	2026-06-08 08:44:21	MarkDuplicates	Tracking 1143357 as yet unmatched pairs. 233 records in RAM.
INFO	2026-06-08 08:44:22	MarkDuplicates	Read   147,000,000 records.  Elapsed time: 00:04:16s.  Time for last 1,000,000:    1s.  Last read position: chr5:10,262,569
INFO	2026-06-08 08:44:22	MarkDuplicates	Tracking 1141172 as yet unmatched pairs. 46427 records in RAM.
INFO	2026-06-08 08:44:24	MarkDuplicates	Read   148,000,000 records.  Elapsed time: 00:04:18s.  Time for last 1,000,000:    1s.  Last read position: chr5:14,504,522
INFO	2026-06-08 08:44:24	MarkDuplicates	Tracking 1139380 as yet unmatched pairs. 44635 records in RAM.
INFO	2026-06-08 08:44:26	MarkDuplicates	Read   149,000,000 records.  Elapsed time: 00:04:20s.  Time for last 1,000,000:    1s.  Last read position: chr5:37,728,284
INFO	2026-06-08 08:44:26	MarkDuplicates	Tracking 1136222 as yet unmatched pairs. 41473 records in RAM.
INFO	2026-06-08 08:44:27	MarkDuplicates	Read   150,000,000 records.  Elapsed time: 00:04:21s.  Time for last 1,000,000:    1s.  Last read position: chr5:61,538,880
INFO	2026-06-08 08:44:27	MarkDuplicates	Tracking 1134301 as yet unmatched pairs. 39550 records in RAM.
INFO	2026-06-08 08:44:29	MarkDuplicates	Read   151,000,000 records.  Elapsed time: 00:04:22s.  Time for last 1,000,000:    1s.  Last read position: chr5:72,889,856
INFO	2026-06-08 08:44:29	MarkDuplicates	Tracking 1132694 as yet unmatched pairs. 37941 records in RAM.
INFO	2026-06-08 08:44:30	MarkDuplicates	Read   152,000,000 records.  Elapsed time: 00:04:24s.  Time for last 1,000,000:    1s.  Last read position: chr5:83,538,341
INFO	2026-06-08 08:44:30	MarkDuplicates	Tracking 1130526 as yet unmatched pairs. 35773 records in RAM.
INFO	2026-06-08 08:44:32	MarkDuplicates	Read   153,000,000 records.  Elapsed time: 00:04:26s.  Time for last 1,000,000:    2s.  Last read position: chr5:102,831,878
INFO	2026-06-08 08:44:32	MarkDuplicates	Tracking 1128152 as yet unmatched pairs. 33398 records in RAM.
INFO	2026-06-08 08:44:34	MarkDuplicates	Read   154,000,000 records.  Elapsed time: 00:04:28s.  Time for last 1,000,000:    1s.  Last read position: chr5:132,370,118
INFO	2026-06-08 08:44:34	MarkDuplicates	Tracking 1126254 as yet unmatched pairs. 31499 records in RAM.
INFO	2026-06-08 08:44:36	MarkDuplicates	Read   155,000,000 records.  Elapsed time: 00:04:30s.  Time for last 1,000,000:    1s.  Last read position: chr5:137,753,740
INFO	2026-06-08 08:44:36	MarkDuplicates	Tracking 1124154 as yet unmatched pairs. 29396 records in RAM.
INFO	2026-06-08 08:44:38	MarkDuplicates	Read   156,000,000 records.  Elapsed time: 00:04:31s.  Time for last 1,000,000:    1s.  Last read position: chr5:140,528,702
INFO	2026-06-08 08:44:38	MarkDuplicates	Tracking 1121867 as yet unmatched pairs. 26998 records in RAM.
INFO	2026-06-08 08:44:39	MarkDuplicates	Read   157,000,000 records.  Elapsed time: 00:04:33s.  Time for last 1,000,000:    1s.  Last read position: chr5:141,930,184
INFO	2026-06-08 08:44:39	MarkDuplicates	Tracking 1119468 as yet unmatched pairs. 24599 records in RAM.
INFO	2026-06-08 08:44:41	MarkDuplicates	Read   158,000,000 records.  Elapsed time: 00:04:35s.  Time for last 1,000,000:    2s.  Last read position: chr5:150,094,928
INFO	2026-06-08 08:44:41	MarkDuplicates	Tracking 1117091 as yet unmatched pairs. 22215 records in RAM.
INFO	2026-06-08 08:44:43	MarkDuplicates	Read   159,000,000 records.  Elapsed time: 00:04:37s.  Time for last 1,000,000:    1s.  Last read position: chr5:150,402,234
INFO	2026-06-08 08:44:43	MarkDuplicates	Tracking 1129101 as yet unmatched pairs. 34225 records in RAM.
INFO	2026-06-08 08:44:45	MarkDuplicates	Read   160,000,000 records.  Elapsed time: 00:04:39s.  Time for last 1,000,000:    1s.  Last read position: chr5:150,406,907
INFO	2026-06-08 08:44:45	MarkDuplicates	Tracking 1127743 as yet unmatched pairs. 32867 records in RAM.
INFO	2026-06-08 08:44:47	MarkDuplicates	Read   161,000,000 records.  Elapsed time: 00:04:40s.  Time for last 1,000,000:    1s.  Last read position: chr5:151,062,191
INFO	2026-06-08 08:44:47	MarkDuplicates	Tracking 1111160 as yet unmatched pairs. 16283 records in RAM.
INFO	2026-06-08 08:44:48	MarkDuplicates	Read   162,000,000 records.  Elapsed time: 00:04:42s.  Time for last 1,000,000:    1s.  Last read position: chr5:157,488,360
INFO	2026-06-08 08:44:48	MarkDuplicates	Tracking 1108115 as yet unmatched pairs. 13237 records in RAM.
INFO	2026-06-08 08:44:50	MarkDuplicates	Read   163,000,000 records.  Elapsed time: 00:04:44s.  Time for last 1,000,000:    1s.  Last read position: chr5:171,392,764
INFO	2026-06-08 08:44:50	MarkDuplicates	Tracking 1111847 as yet unmatched pairs. 16966 records in RAM.
INFO	2026-06-08 08:44:51	MarkDuplicates	Read   164,000,000 records.  Elapsed time: 00:04:45s.  Time for last 1,000,000:    1s.  Last read position: chr5:176,532,017
INFO	2026-06-08 08:44:51	MarkDuplicates	Tracking 1104507 as yet unmatched pairs. 9625 records in RAM.
INFO	2026-06-08 08:44:53	MarkDuplicates	Read   165,000,000 records.  Elapsed time: 00:04:47s.  Time for last 1,000,000:    1s.  Last read position: chr5:177,524,316
INFO	2026-06-08 08:44:53	MarkDuplicates	Tracking 1101826 as yet unmatched pairs. 6937 records in RAM.
INFO	2026-06-08 08:44:54	MarkDuplicates	Read   166,000,000 records.  Elapsed time: 00:04:48s.  Time for last 1,000,000:    1s.  Last read position: chr5:179,733,293
INFO	2026-06-08 08:44:54	MarkDuplicates	Tracking 1098790 as yet unmatched pairs. 3900 records in RAM.
INFO	2026-06-08 08:44:56	MarkDuplicates	Read   167,000,000 records.  Elapsed time: 00:04:50s.  Time for last 1,000,000:    1s.  Last read position: chr5:180,791,774
INFO	2026-06-08 08:44:56	MarkDuplicates	Tracking 1096929 as yet unmatched pairs. 2039 records in RAM.
INFO	2026-06-08 08:44:58	MarkDuplicates	Read   168,000,000 records.  Elapsed time: 00:04:52s.  Time for last 1,000,000:    2s.  Last read position: chr6:2,833,546
INFO	2026-06-08 08:44:58	MarkDuplicates	Tracking 1094200 as yet unmatched pairs. 76603 records in RAM.
INFO	2026-06-08 08:45:00	MarkDuplicates	Read   169,000,000 records.  Elapsed time: 00:04:54s.  Time for last 1,000,000:    1s.  Last read position: chr6:7,230,985
INFO	2026-06-08 08:45:00	MarkDuplicates	Tracking 1093052 as yet unmatched pairs. 75455 records in RAM.
INFO	2026-06-08 08:45:01	MarkDuplicates	Read   170,000,000 records.  Elapsed time: 00:04:55s.  Time for last 1,000,000:    1s.  Last read position: chr6:8,430,091
INFO	2026-06-08 08:45:01	MarkDuplicates	Tracking 1089731 as yet unmatched pairs. 72126 records in RAM.
INFO	2026-06-08 08:45:03	MarkDuplicates	Read   171,000,000 records.  Elapsed time: 00:04:57s.  Time for last 1,000,000:    1s.  Last read position: chr6:18,258,044
INFO	2026-06-08 08:45:03	MarkDuplicates	Tracking 1087969 as yet unmatched pairs. 70358 records in RAM.
INFO	2026-06-08 08:45:05	MarkDuplicates	Read   172,000,000 records.  Elapsed time: 00:04:58s.  Time for last 1,000,000:    1s.  Last read position: chr6:26,376,998
INFO	2026-06-08 08:45:05	MarkDuplicates	Tracking 1085474 as yet unmatched pairs. 67856 records in RAM.
INFO	2026-06-08 08:45:06	MarkDuplicates	Read   173,000,000 records.  Elapsed time: 00:05:00s.  Time for last 1,000,000:    1s.  Last read position: chr6:29,723,787
INFO	2026-06-08 08:45:06	MarkDuplicates	Tracking 1083826 as yet unmatched pairs. 66208 records in RAM.
INFO	2026-06-08 08:45:08	MarkDuplicates	Read   174,000,000 records.  Elapsed time: 00:05:01s.  Time for last 1,000,000:    1s.  Last read position: chr6:30,490,022
INFO	2026-06-08 08:45:08	MarkDuplicates	Tracking 1081820 as yet unmatched pairs. 64200 records in RAM.
INFO	2026-06-08 08:45:09	MarkDuplicates	Read   175,000,000 records.  Elapsed time: 00:05:03s.  Time for last 1,000,000:    1s.  Last read position: chr6:30,730,071
INFO	2026-06-08 08:45:09	MarkDuplicates	Tracking 1079542 as yet unmatched pairs. 61919 records in RAM.
INFO	2026-06-08 08:45:11	MarkDuplicates	Read   176,000,000 records.  Elapsed time: 00:05:05s.  Time for last 1,000,000:    2s.  Last read position: chr6:31,269,009
INFO	2026-06-08 08:45:11	MarkDuplicates	Tracking 1079130 as yet unmatched pairs. 61506 records in RAM.
INFO	2026-06-08 08:45:13	MarkDuplicates	Read   177,000,000 records.  Elapsed time: 00:05:07s.  Time for last 1,000,000:    1s.  Last read position: chr6:31,624,262
INFO	2026-06-08 08:45:13	MarkDuplicates	Tracking 1075904 as yet unmatched pairs. 58280 records in RAM.
INFO	2026-06-08 08:45:14	MarkDuplicates	Read   178,000,000 records.  Elapsed time: 00:05:08s.  Time for last 1,000,000:    1s.  Last read position: chr6:31,644,311
INFO	2026-06-08 08:45:14	MarkDuplicates	Tracking 1074271 as yet unmatched pairs. 56647 records in RAM.
INFO	2026-06-08 08:45:16	MarkDuplicates	Read   179,000,000 records.  Elapsed time: 00:05:10s.  Time for last 1,000,000:    1s.  Last read position: chr6:31,816,139
INFO	2026-06-08 08:45:16	MarkDuplicates	Tracking 1069932 as yet unmatched pairs. 52308 records in RAM.
INFO	2026-06-08 08:45:18	MarkDuplicates	Read   180,000,000 records.  Elapsed time: 00:05:12s.  Time for last 1,000,000:    1s.  Last read position: chr6:31,933,612
INFO	2026-06-08 08:45:18	MarkDuplicates	Tracking 1069046 as yet unmatched pairs. 51421 records in RAM.
INFO	2026-06-08 08:45:20	MarkDuplicates	Read   181,000,000 records.  Elapsed time: 00:05:13s.  Time for last 1,000,000:    1s.  Last read position: chr6:32,192,497
INFO	2026-06-08 08:45:20	MarkDuplicates	Tracking 1065944 as yet unmatched pairs. 48317 records in RAM.
INFO	2026-06-08 08:45:21	MarkDuplicates	Read   182,000,000 records.  Elapsed time: 00:05:15s.  Time for last 1,000,000:    1s.  Last read position: chr6:32,853,519
INFO	2026-06-08 08:45:21	MarkDuplicates	Tracking 1065658 as yet unmatched pairs. 48031 records in RAM.
INFO	2026-06-08 08:45:23	MarkDuplicates	Read   183,000,000 records.  Elapsed time: 00:05:17s.  Time for last 1,000,000:    2s.  Last read position: chr6:33,292,137
INFO	2026-06-08 08:45:23	MarkDuplicates	Tracking 1061947 as yet unmatched pairs. 44320 records in RAM.
INFO	2026-06-08 08:45:25	MarkDuplicates	Read   184,000,000 records.  Elapsed time: 00:05:19s.  Time for last 1,000,000:    1s.  Last read position: chr6:33,414,201
INFO	2026-06-08 08:45:25	MarkDuplicates	Tracking 1059339 as yet unmatched pairs. 41712 records in RAM.
INFO	2026-06-08 08:45:27	MarkDuplicates	Read   185,000,000 records.  Elapsed time: 00:05:20s.  Time for last 1,000,000:    1s.  Last read position: chr6:33,694,988
INFO	2026-06-08 08:45:27	MarkDuplicates	Tracking 1057453 as yet unmatched pairs. 39826 records in RAM.
INFO	2026-06-08 08:45:28	MarkDuplicates	Read   186,000,000 records.  Elapsed time: 00:05:22s.  Time for last 1,000,000:    1s.  Last read position: chr6:35,455,948
INFO	2026-06-08 08:45:28	MarkDuplicates	Tracking 1053845 as yet unmatched pairs. 36218 records in RAM.
INFO	2026-06-08 08:45:30	MarkDuplicates	Read   187,000,000 records.  Elapsed time: 00:05:24s.  Time for last 1,000,000:    1s.  Last read position: chr6:37,170,581
INFO	2026-06-08 08:45:30	MarkDuplicates	Tracking 1051810 as yet unmatched pairs. 34183 records in RAM.
INFO	2026-06-08 08:45:32	MarkDuplicates	Read   188,000,000 records.  Elapsed time: 00:05:25s.  Time for last 1,000,000:    1s.  Last read position: chr6:42,829,584
INFO	2026-06-08 08:45:32	MarkDuplicates	Tracking 1049140 as yet unmatched pairs. 31507 records in RAM.
INFO	2026-06-08 08:45:33	MarkDuplicates	Read   189,000,000 records.  Elapsed time: 00:05:27s.  Time for last 1,000,000:    1s.  Last read position: chr6:43,354,938
INFO	2026-06-08 08:45:33	MarkDuplicates	Tracking 1047724 as yet unmatched pairs. 30091 records in RAM.
INFO	2026-06-08 08:45:35	MarkDuplicates	Read   190,000,000 records.  Elapsed time: 00:05:28s.  Time for last 1,000,000:    1s.  Last read position: chr6:43,777,510
INFO	2026-06-08 08:45:35	MarkDuplicates	Tracking 1046461 as yet unmatched pairs. 28826 records in RAM.
INFO	2026-06-08 08:45:36	MarkDuplicates	Read   191,000,000 records.  Elapsed time: 00:05:30s.  Time for last 1,000,000:    1s.  Last read position: chr6:45,961,658
INFO	2026-06-08 08:45:36	MarkDuplicates	Tracking 1041485 as yet unmatched pairs. 23850 records in RAM.
INFO	2026-06-08 08:45:38	MarkDuplicates	Read   192,000,000 records.  Elapsed time: 00:05:32s.  Time for last 1,000,000:    1s.  Last read position: chr6:63,211,753
INFO	2026-06-08 08:45:38	MarkDuplicates	Tracking 1039721 as yet unmatched pairs. 22086 records in RAM.
INFO	2026-06-08 08:45:39	MarkDuplicates	Read   193,000,000 records.  Elapsed time: 00:05:33s.  Time for last 1,000,000:    1s.  Last read position: chr6:85,619,267
INFO	2026-06-08 08:45:39	MarkDuplicates	Tracking 1037364 as yet unmatched pairs. 19724 records in RAM.
INFO	2026-06-08 08:45:41	MarkDuplicates	Read   194,000,000 records.  Elapsed time: 00:05:34s.  Time for last 1,000,000:    1s.  Last read position: chr6:108,663,561
INFO	2026-06-08 08:45:41	MarkDuplicates	Tracking 1035099 as yet unmatched pairs. 17449 records in RAM.
INFO	2026-06-08 08:45:42	MarkDuplicates	Read   195,000,000 records.  Elapsed time: 00:05:36s.  Time for last 1,000,000:    1s.  Last read position: chr6:117,675,688
INFO	2026-06-08 08:45:42	MarkDuplicates	Tracking 1033617 as yet unmatched pairs. 15963 records in RAM.
INFO	2026-06-08 08:45:44	MarkDuplicates	Read   196,000,000 records.  Elapsed time: 00:05:38s.  Time for last 1,000,000:    1s.  Last read position: chr6:137,203,559
INFO	2026-06-08 08:45:44	MarkDuplicates	Tracking 1030614 as yet unmatched pairs. 12959 records in RAM.
INFO	2026-06-08 08:45:46	MarkDuplicates	Read   197,000,000 records.  Elapsed time: 00:05:39s.  Time for last 1,000,000:    1s.  Last read position: chr6:148,544,808
INFO	2026-06-08 08:45:46	MarkDuplicates	Tracking 1028284 as yet unmatched pairs. 10619 records in RAM.
INFO	2026-06-08 08:45:47	MarkDuplicates	Read   198,000,000 records.  Elapsed time: 00:05:41s.  Time for last 1,000,000:    1s.  Last read position: chr6:156,829,231
INFO	2026-06-08 08:45:47	MarkDuplicates	Tracking 1026431 as yet unmatched pairs. 8764 records in RAM.
INFO	2026-06-08 08:45:48	MarkDuplicates	Read   199,000,000 records.  Elapsed time: 00:05:42s.  Time for last 1,000,000:    1s.  Last read position: chr6:158,769,824
INFO	2026-06-08 08:45:48	MarkDuplicates	Tracking 1025178 as yet unmatched pairs. 7508 records in RAM.
INFO	2026-06-08 08:45:50	MarkDuplicates	Read   200,000,000 records.  Elapsed time: 00:05:44s.  Time for last 1,000,000:    1s.  Last read position: chr6:159,755,343
INFO	2026-06-08 08:45:50	MarkDuplicates	Tracking 1021675 as yet unmatched pairs. 4003 records in RAM.
INFO	2026-06-08 08:45:52	MarkDuplicates	Read   201,000,000 records.  Elapsed time: 00:05:45s.  Time for last 1,000,000:    1s.  Last read position: chr6:166,984,721
INFO	2026-06-08 08:45:52	MarkDuplicates	Tracking 1019161 as yet unmatched pairs. 1488 records in RAM.
INFO	2026-06-08 08:45:54	MarkDuplicates	Read   202,000,000 records.  Elapsed time: 00:05:48s.  Time for last 1,000,000:    2s.  Last read position: chr7:1,444,969
INFO	2026-06-08 08:45:54	MarkDuplicates	Tracking 1017405 as yet unmatched pairs. 67272 records in RAM.
INFO	2026-06-08 08:45:56	MarkDuplicates	Read   203,000,000 records.  Elapsed time: 00:05:50s.  Time for last 1,000,000:    2s.  Last read position: chr7:4,241,874
INFO	2026-06-08 08:45:56	MarkDuplicates	Tracking 1013718 as yet unmatched pairs. 63581 records in RAM.
INFO	2026-06-08 08:45:58	MarkDuplicates	Read   204,000,000 records.  Elapsed time: 00:05:51s.  Time for last 1,000,000:    1s.  Last read position: chr7:5,527,505
INFO	2026-06-08 08:45:58	MarkDuplicates	Tracking 1011078 as yet unmatched pairs. 60941 records in RAM.
INFO	2026-06-08 08:46:00	MarkDuplicates	Read   205,000,000 records.  Elapsed time: 00:05:53s.  Time for last 1,000,000:    1s.  Last read position: chr7:5,529,575
INFO	2026-06-08 08:46:00	MarkDuplicates	Tracking 1010835 as yet unmatched pairs. 60697 records in RAM.
INFO	2026-06-08 08:46:01	MarkDuplicates	Read   206,000,000 records.  Elapsed time: 00:05:55s.  Time for last 1,000,000:    1s.  Last read position: chr7:23,260,723
INFO	2026-06-08 08:46:01	MarkDuplicates	Tracking 1006471 as yet unmatched pairs. 56326 records in RAM.
INFO	2026-06-08 08:46:03	MarkDuplicates	Read   207,000,000 records.  Elapsed time: 00:05:57s.  Time for last 1,000,000:    1s.  Last read position: chr7:36,160,659
INFO	2026-06-08 08:46:03	MarkDuplicates	Tracking 1003820 as yet unmatched pairs. 53675 records in RAM.
INFO	2026-06-08 08:46:04	MarkDuplicates	Read   208,000,000 records.  Elapsed time: 00:05:58s.  Time for last 1,000,000:    1s.  Last read position: chr7:44,112,738
INFO	2026-06-08 08:46:04	MarkDuplicates	Tracking 1002400 as yet unmatched pairs. 52255 records in RAM.
INFO	2026-06-08 08:46:06	MarkDuplicates	Read   209,000,000 records.  Elapsed time: 00:06:00s.  Time for last 1,000,000:    1s.  Last read position: chr7:47,368,468
INFO	2026-06-08 08:46:06	MarkDuplicates	Tracking 999803 as yet unmatched pairs. 49658 records in RAM.
INFO	2026-06-08 08:46:08	MarkDuplicates	Read   210,000,000 records.  Elapsed time: 00:06:02s.  Time for last 1,000,000:    1s.  Last read position: chr7:55,163,781
INFO	2026-06-08 08:46:08	MarkDuplicates	Tracking 999648 as yet unmatched pairs. 49501 records in RAM.
INFO	2026-06-08 08:46:10	MarkDuplicates	Read   211,000,000 records.  Elapsed time: 00:06:03s.  Time for last 1,000,000:    1s.  Last read position: chr7:57,004,294
INFO	2026-06-08 08:46:10	MarkDuplicates	Tracking 994874 as yet unmatched pairs. 44727 records in RAM.
INFO	2026-06-08 08:46:11	MarkDuplicates	Read   212,000,000 records.  Elapsed time: 00:06:05s.  Time for last 1,000,000:    1s.  Last read position: chr7:73,097,430
INFO	2026-06-08 08:46:11	MarkDuplicates	Tracking 993468 as yet unmatched pairs. 43319 records in RAM.
INFO	2026-06-08 08:46:12	MarkDuplicates	Read   213,000,000 records.  Elapsed time: 00:06:06s.  Time for last 1,000,000:    1s.  Last read position: chr7:74,249,756
INFO	2026-06-08 08:46:12	MarkDuplicates	Tracking 991939 as yet unmatched pairs. 41789 records in RAM.
INFO	2026-06-08 08:46:14	MarkDuplicates	Read   214,000,000 records.  Elapsed time: 00:06:08s.  Time for last 1,000,000:    1s.  Last read position: chr7:75,494,161
INFO	2026-06-08 08:46:14	MarkDuplicates	Tracking 990188 as yet unmatched pairs. 40038 records in RAM.
INFO	2026-06-08 08:46:15	MarkDuplicates	Read   215,000,000 records.  Elapsed time: 00:06:09s.  Time for last 1,000,000:    1s.  Last read position: chr7:76,304,036
INFO	2026-06-08 08:46:15	MarkDuplicates	Tracking 994056 as yet unmatched pairs. 43904 records in RAM.
INFO	2026-06-08 08:46:17	MarkDuplicates	Read   216,000,000 records.  Elapsed time: 00:06:10s.  Time for last 1,000,000:    1s.  Last read position: chr7:92,003,000
INFO	2026-06-08 08:46:17	MarkDuplicates	Tracking 986192 as yet unmatched pairs. 36029 records in RAM.
INFO	2026-06-08 08:46:18	MarkDuplicates	Read   217,000,000 records.  Elapsed time: 00:06:12s.  Time for last 1,000,000:    1s.  Last read position: chr7:94,426,494
INFO	2026-06-08 08:46:18	MarkDuplicates	Tracking 984280 as yet unmatched pairs. 34117 records in RAM.
INFO	2026-06-08 08:46:20	MarkDuplicates	Read   218,000,000 records.  Elapsed time: 00:06:14s.  Time for last 1,000,000:    1s.  Last read position: chr7:99,385,704
INFO	2026-06-08 08:46:20	MarkDuplicates	Tracking 983964 as yet unmatched pairs. 33800 records in RAM.
INFO	2026-06-08 08:46:22	MarkDuplicates	Read   219,000,000 records.  Elapsed time: 00:06:15s.  Time for last 1,000,000:    1s.  Last read position: chr7:100,353,757
INFO	2026-06-08 08:46:22	MarkDuplicates	Tracking 979380 as yet unmatched pairs. 29209 records in RAM.
INFO	2026-06-08 08:46:23	MarkDuplicates	Read   220,000,000 records.  Elapsed time: 00:06:17s.  Time for last 1,000,000:    1s.  Last read position: chr7:100,881,311
INFO	2026-06-08 08:46:23	MarkDuplicates	Tracking 976483 as yet unmatched pairs. 26312 records in RAM.
INFO	2026-06-08 08:46:25	MarkDuplicates	Read   221,000,000 records.  Elapsed time: 00:06:19s.  Time for last 1,000,000:    2s.  Last read position: chr7:102,351,050
INFO	2026-06-08 08:46:25	MarkDuplicates	Tracking 974067 as yet unmatched pairs. 23894 records in RAM.
INFO	2026-06-08 08:46:26	MarkDuplicates	Read   222,000,000 records.  Elapsed time: 00:06:20s.  Time for last 1,000,000:    1s.  Last read position: chr7:102,655,059
INFO	2026-06-08 08:46:26	MarkDuplicates	Tracking 973508 as yet unmatched pairs. 23335 records in RAM.
INFO	2026-06-08 08:46:28	MarkDuplicates	Read   223,000,000 records.  Elapsed time: 00:06:22s.  Time for last 1,000,000:    1s.  Last read position: chr7:107,961,224
INFO	2026-06-08 08:46:28	MarkDuplicates	Tracking 971606 as yet unmatched pairs. 21423 records in RAM.
INFO	2026-06-08 08:46:30	MarkDuplicates	Read   224,000,000 records.  Elapsed time: 00:06:24s.  Time for last 1,000,000:    1s.  Last read position: chr7:127,694,861
INFO	2026-06-08 08:46:30	MarkDuplicates	Tracking 972561 as yet unmatched pairs. 22378 records in RAM.
INFO	2026-06-08 08:46:32	MarkDuplicates	Read   225,000,000 records.  Elapsed time: 00:06:26s.  Time for last 1,000,000:    2s.  Last read position: chr7:128,844,007
INFO	2026-06-08 08:46:32	MarkDuplicates	Tracking 967010 as yet unmatched pairs. 16827 records in RAM.
INFO	2026-06-08 08:46:34	MarkDuplicates	Read   226,000,000 records.  Elapsed time: 00:06:27s.  Time for last 1,000,000:    1s.  Last read position: chr7:135,187,063
INFO	2026-06-08 08:46:34	MarkDuplicates	Tracking 965205 as yet unmatched pairs. 15020 records in RAM.
INFO	2026-06-08 08:46:35	MarkDuplicates	Read   227,000,000 records.  Elapsed time: 00:06:29s.  Time for last 1,000,000:    1s.  Last read position: chr7:139,575,252
INFO	2026-06-08 08:46:35	MarkDuplicates	Tracking 963364 as yet unmatched pairs. 13179 records in RAM.
INFO	2026-06-08 08:46:37	MarkDuplicates	Read   228,000,000 records.  Elapsed time: 00:06:30s.  Time for last 1,000,000:    1s.  Last read position: chr7:143,265,106
INFO	2026-06-08 08:46:37	MarkDuplicates	Tracking 960170 as yet unmatched pairs. 9984 records in RAM.
INFO	2026-06-08 08:46:38	MarkDuplicates	Read   229,000,000 records.  Elapsed time: 00:06:32s.  Time for last 1,000,000:    1s.  Last read position: chr7:144,285,742
INFO	2026-06-08 08:46:38	MarkDuplicates	Tracking 958104 as yet unmatched pairs. 7918 records in RAM.
INFO	2026-06-08 08:46:39	MarkDuplicates	Read   230,000,000 records.  Elapsed time: 00:06:33s.  Time for last 1,000,000:    1s.  Last read position: chr7:150,371,432
INFO	2026-06-08 08:46:39	MarkDuplicates	Tracking 956580 as yet unmatched pairs. 6393 records in RAM.
INFO	2026-06-08 08:46:41	MarkDuplicates	Read   231,000,000 records.  Elapsed time: 00:06:35s.  Time for last 1,000,000:    1s.  Last read position: chr7:151,223,844
INFO	2026-06-08 08:46:41	MarkDuplicates	Tracking 953333 as yet unmatched pairs. 3146 records in RAM.
INFO	2026-06-08 08:46:43	MarkDuplicates	Read   232,000,000 records.  Elapsed time: 00:06:36s.  Time for last 1,000,000:    1s.  Last read position: chr7:157,005,599
INFO	2026-06-08 08:46:43	MarkDuplicates	Tracking 951196 as yet unmatched pairs. 1008 records in RAM.
INFO	2026-06-08 08:46:45	MarkDuplicates	Read   233,000,000 records.  Elapsed time: 00:06:38s.  Time for last 1,000,000:    1s.  Last read position: chr8:11,802,852
INFO	2026-06-08 08:46:45	MarkDuplicates	Tracking 949064 as yet unmatched pairs. 64961 records in RAM.
INFO	2026-06-08 08:46:46	MarkDuplicates	Read   234,000,000 records.  Elapsed time: 00:06:40s.  Time for last 1,000,000:    1s.  Last read position: chr8:17,284,504
INFO	2026-06-08 08:46:46	MarkDuplicates	Tracking 946612 as yet unmatched pairs. 62508 records in RAM.
INFO	2026-06-08 08:46:48	MarkDuplicates	Read   235,000,000 records.  Elapsed time: 00:06:42s.  Time for last 1,000,000:    1s.  Last read position: chr8:22,613,024
INFO	2026-06-08 08:46:48	MarkDuplicates	Tracking 944484 as yet unmatched pairs. 60380 records in RAM.
INFO	2026-06-08 08:46:50	MarkDuplicates	Read   236,000,000 records.  Elapsed time: 00:06:43s.  Time for last 1,000,000:    1s.  Last read position: chr8:26,652,291
INFO	2026-06-08 08:46:50	MarkDuplicates	Tracking 941886 as yet unmatched pairs. 57781 records in RAM.
INFO	2026-06-08 08:46:51	MarkDuplicates	Read   237,000,000 records.  Elapsed time: 00:06:45s.  Time for last 1,000,000:    1s.  Last read position: chr8:37,875,046
INFO	2026-06-08 08:46:51	MarkDuplicates	Tracking 939407 as yet unmatched pairs. 55302 records in RAM.
INFO	2026-06-08 08:46:53	MarkDuplicates	Read   238,000,000 records.  Elapsed time: 00:06:47s.  Time for last 1,000,000:    1s.  Last read position: chr8:41,507,065
INFO	2026-06-08 08:46:53	MarkDuplicates	Tracking 937658 as yet unmatched pairs. 53552 records in RAM.
INFO	2026-06-08 08:46:54	MarkDuplicates	Read   239,000,000 records.  Elapsed time: 00:06:48s.  Time for last 1,000,000:    1s.  Last read position: chr8:47,887,606
INFO	2026-06-08 08:46:54	MarkDuplicates	Tracking 935369 as yet unmatched pairs. 51260 records in RAM.
INFO	2026-06-08 08:46:56	MarkDuplicates	Read   240,000,000 records.  Elapsed time: 00:06:50s.  Time for last 1,000,000:    1s.  Last read position: chr8:58,605,996
INFO	2026-06-08 08:46:56	MarkDuplicates	Tracking 932957 as yet unmatched pairs. 48845 records in RAM.
INFO	2026-06-08 08:46:58	MarkDuplicates	Read   241,000,000 records.  Elapsed time: 00:06:52s.  Time for last 1,000,000:    1s.  Last read position: chr8:68,072,553
INFO	2026-06-08 08:46:58	MarkDuplicates	Tracking 930785 as yet unmatched pairs. 46673 records in RAM.
INFO	2026-06-08 08:47:00	MarkDuplicates	Read   242,000,000 records.  Elapsed time: 00:06:54s.  Time for last 1,000,000:    2s.  Last read position: chr8:81,758,216
INFO	2026-06-08 08:47:00	MarkDuplicates	Tracking 928961 as yet unmatched pairs. 44847 records in RAM.
INFO	2026-06-08 08:47:02	MarkDuplicates	Read   243,000,000 records.  Elapsed time: 00:06:56s.  Time for last 1,000,000:    2s.  Last read position: chr8:98,042,754
INFO	2026-06-08 08:47:02	MarkDuplicates	Tracking 928333 as yet unmatched pairs. 44218 records in RAM.
INFO	2026-06-08 08:47:04	MarkDuplicates	Read   244,000,000 records.  Elapsed time: 00:06:57s.  Time for last 1,000,000:    1s.  Last read position: chr8:100,721,453
INFO	2026-06-08 08:47:04	MarkDuplicates	Tracking 930305 as yet unmatched pairs. 46189 records in RAM.
INFO	2026-06-08 08:47:05	MarkDuplicates	Read   245,000,000 records.  Elapsed time: 00:06:59s.  Time for last 1,000,000:    1s.  Last read position: chr8:116,857,404
INFO	2026-06-08 08:47:05	MarkDuplicates	Tracking 922414 as yet unmatched pairs. 38297 records in RAM.
INFO	2026-06-08 08:47:07	MarkDuplicates	Read   246,000,000 records.  Elapsed time: 00:07:01s.  Time for last 1,000,000:    1s.  Last read position: chr8:124,556,232
INFO	2026-06-08 08:47:07	MarkDuplicates	Tracking 919960 as yet unmatched pairs. 35842 records in RAM.
INFO	2026-06-08 08:47:09	MarkDuplicates	Read   247,000,000 records.  Elapsed time: 00:07:02s.  Time for last 1,000,000:    1s.  Last read position: chr8:131,996,449
INFO	2026-06-08 08:47:09	MarkDuplicates	Tracking 917710 as yet unmatched pairs. 33592 records in RAM.
INFO	2026-06-08 08:47:11	MarkDuplicates	Read   248,000,000 records.  Elapsed time: 00:07:04s.  Time for last 1,000,000:    1s.  Last read position: chr8:141,165,196
INFO	2026-06-08 08:47:11	MarkDuplicates	Tracking 915555 as yet unmatched pairs. 31436 records in RAM.
INFO	2026-06-08 08:47:12	MarkDuplicates	Read   249,000,000 records.  Elapsed time: 00:07:06s.  Time for last 1,000,000:    1s.  Last read position: chr8:143,567,297
INFO	2026-06-08 08:47:12	MarkDuplicates	Tracking 913144 as yet unmatched pairs. 29025 records in RAM.
INFO	2026-06-08 08:47:14	MarkDuplicates	Read   250,000,000 records.  Elapsed time: 00:07:07s.  Time for last 1,000,000:    1s.  Last read position: chr8:143,792,718
INFO	2026-06-08 08:47:14	MarkDuplicates	Tracking 910894 as yet unmatched pairs. 26766 records in RAM.
INFO	2026-06-08 08:48:19	MarkDuplicates	Read   251,000,000 records.  Elapsed time: 00:08:13s.  Time for last 1,000,000:   65s.  Last read position: chr8:143,858,314
INFO	2026-06-08 08:48:19	MarkDuplicates	Tracking 908341 as yet unmatched pairs. 24213 records in RAM.
INFO	2026-06-08 08:48:21	MarkDuplicates	Read   252,000,000 records.  Elapsed time: 00:08:15s.  Time for last 1,000,000:    1s.  Last read position: chr8:143,859,115
INFO	2026-06-08 08:48:21	MarkDuplicates	Tracking 910633 as yet unmatched pairs. 26505 records in RAM.
INFO	2026-06-08 08:48:22	MarkDuplicates	Read   253,000,000 records.  Elapsed time: 00:08:16s.  Time for last 1,000,000:    1s.  Last read position: chr8:143,860,246
INFO	2026-06-08 08:48:22	MarkDuplicates	Tracking 910254 as yet unmatched pairs. 26126 records in RAM.
INFO	2026-06-08 08:48:24	MarkDuplicates	Read   254,000,000 records.  Elapsed time: 00:08:17s.  Time for last 1,000,000:    1s.  Last read position: chr8:143,861,116
INFO	2026-06-08 08:48:24	MarkDuplicates	Tracking 906371 as yet unmatched pairs. 22243 records in RAM.
INFO	2026-06-08 08:48:25	MarkDuplicates	Read   255,000,000 records.  Elapsed time: 00:08:19s.  Time for last 1,000,000:    1s.  Last read position: chr8:143,861,744
INFO	2026-06-08 08:48:25	MarkDuplicates	Tracking 911813 as yet unmatched pairs. 27685 records in RAM.
INFO	2026-06-08 08:48:26	MarkDuplicates	Read   256,000,000 records.  Elapsed time: 00:08:20s.  Time for last 1,000,000:    1s.  Last read position: chr8:143,862,613
INFO	2026-06-08 08:48:26	MarkDuplicates	Tracking 910533 as yet unmatched pairs. 26405 records in RAM.
INFO	2026-06-08 08:48:27	MarkDuplicates	Read   257,000,000 records.  Elapsed time: 00:08:21s.  Time for last 1,000,000:    1s.  Last read position: chr8:143,863,271
INFO	2026-06-08 08:48:27	MarkDuplicates	Tracking 907836 as yet unmatched pairs. 23708 records in RAM.
INFO	2026-06-08 08:48:28	MarkDuplicates	Read   258,000,000 records.  Elapsed time: 00:08:22s.  Time for last 1,000,000:    1s.  Last read position: chr8:143,864,319
INFO	2026-06-08 08:48:28	MarkDuplicates	Tracking 904959 as yet unmatched pairs. 20831 records in RAM.
INFO	2026-06-08 08:48:30	MarkDuplicates	Read   259,000,000 records.  Elapsed time: 00:08:23s.  Time for last 1,000,000:    1s.  Last read position: chr8:143,865,170
INFO	2026-06-08 08:48:30	MarkDuplicates	Tracking 902734 as yet unmatched pairs. 18606 records in RAM.
INFO	2026-06-08 08:48:31	MarkDuplicates	Read   260,000,000 records.  Elapsed time: 00:08:25s.  Time for last 1,000,000:    1s.  Last read position: chr8:143,866,096
INFO	2026-06-08 08:48:31	MarkDuplicates	Tracking 900769 as yet unmatched pairs. 16641 records in RAM.
INFO	2026-06-08 08:48:32	MarkDuplicates	Read   261,000,000 records.  Elapsed time: 00:08:26s.  Time for last 1,000,000:    1s.  Last read position: chr8:143,868,830
INFO	2026-06-08 08:48:32	MarkDuplicates	Tracking 900676 as yet unmatched pairs. 16548 records in RAM.
INFO	2026-06-08 08:48:34	MarkDuplicates	Read   262,000,000 records.  Elapsed time: 00:08:28s.  Time for last 1,000,000:    1s.  Last read position: chr8:143,919,395
INFO	2026-06-08 08:48:34	MarkDuplicates	Tracking 900787 as yet unmatched pairs. 16648 records in RAM.
INFO	2026-06-08 08:48:36	MarkDuplicates	Read   263,000,000 records.  Elapsed time: 00:08:30s.  Time for last 1,000,000:    1s.  Last read position: chr8:143,925,226
INFO	2026-06-08 08:48:36	MarkDuplicates	Tracking 895722 as yet unmatched pairs. 11583 records in RAM.
INFO	2026-06-08 08:48:38	MarkDuplicates	Read   264,000,000 records.  Elapsed time: 00:08:32s.  Time for last 1,000,000:    2s.  Last read position: chr8:143,991,370
INFO	2026-06-08 08:48:38	MarkDuplicates	Tracking 891834 as yet unmatched pairs. 7695 records in RAM.
INFO	2026-06-08 08:48:41	MarkDuplicates	Read   265,000,000 records.  Elapsed time: 00:08:35s.  Time for last 1,000,000:    2s.  Last read position: chr8:144,263,846
INFO	2026-06-08 08:48:41	MarkDuplicates	Tracking 889108 as yet unmatched pairs. 4969 records in RAM.
INFO	2026-06-08 08:48:42	MarkDuplicates	Read   266,000,000 records.  Elapsed time: 00:08:36s.  Time for last 1,000,000:    1s.  Last read position: chr8:144,473,183
INFO	2026-06-08 08:48:42	MarkDuplicates	Tracking 887028 as yet unmatched pairs. 2889 records in RAM.
INFO	2026-06-08 08:48:44	MarkDuplicates	Read   267,000,000 records.  Elapsed time: 00:08:38s.  Time for last 1,000,000:    1s.  Last read position: chr9:712,748
INFO	2026-06-08 08:48:44	MarkDuplicates	Tracking 884103 as yet unmatched pairs. 54376 records in RAM.
INFO	2026-06-08 08:48:45	MarkDuplicates	Read   268,000,000 records.  Elapsed time: 00:08:39s.  Time for last 1,000,000:    1s.  Last read position: chr9:6,887,969
INFO	2026-06-08 08:48:45	MarkDuplicates	Tracking 881328 as yet unmatched pairs. 51600 records in RAM.
INFO	2026-06-08 08:48:47	MarkDuplicates	Read   269,000,000 records.  Elapsed time: 00:08:41s.  Time for last 1,000,000:    1s.  Last read position: chr9:19,358,060
INFO	2026-06-08 08:48:47	MarkDuplicates	Tracking 879339 as yet unmatched pairs. 49605 records in RAM.
INFO	2026-06-08 08:48:49	MarkDuplicates	Read   270,000,000 records.  Elapsed time: 00:08:43s.  Time for last 1,000,000:    1s.  Last read position: chr9:33,264,415
INFO	2026-06-08 08:48:49	MarkDuplicates	Tracking 877329 as yet unmatched pairs. 47594 records in RAM.
INFO	2026-06-08 08:48:50	MarkDuplicates	Read   271,000,000 records.  Elapsed time: 00:08:44s.  Time for last 1,000,000:    1s.  Last read position: chr9:35,059,182
INFO	2026-06-08 08:48:50	MarkDuplicates	Tracking 875870 as yet unmatched pairs. 46135 records in RAM.
INFO	2026-06-08 08:48:52	MarkDuplicates	Read   272,000,000 records.  Elapsed time: 00:08:46s.  Time for last 1,000,000:    1s.  Last read position: chr9:35,703,571
INFO	2026-06-08 08:48:52	MarkDuplicates	Tracking 872246 as yet unmatched pairs. 42511 records in RAM.
INFO	2026-06-08 08:48:54	MarkDuplicates	Read   273,000,000 records.  Elapsed time: 00:08:48s.  Time for last 1,000,000:    2s.  Last read position: chr9:37,126,483
INFO	2026-06-08 08:48:54	MarkDuplicates	Tracking 869742 as yet unmatched pairs. 39937 records in RAM.
INFO	2026-06-08 08:48:56	MarkDuplicates	Read   274,000,000 records.  Elapsed time: 00:08:50s.  Time for last 1,000,000:    1s.  Last read position: chr9:77,315,390
INFO	2026-06-08 08:48:56	MarkDuplicates	Tracking 867555 as yet unmatched pairs. 37747 records in RAM.
INFO	2026-06-08 08:48:58	MarkDuplicates	Read   275,000,000 records.  Elapsed time: 00:08:52s.  Time for last 1,000,000:    2s.  Last read position: chr9:90,843,963
INFO	2026-06-08 08:48:58	MarkDuplicates	Tracking 865298 as yet unmatched pairs. 35471 records in RAM.
INFO	2026-06-08 08:49:00	MarkDuplicates	Read   276,000,000 records.  Elapsed time: 00:08:53s.  Time for last 1,000,000:    1s.  Last read position: chr9:97,013,259
INFO	2026-06-08 08:49:00	MarkDuplicates	Tracking 862907 as yet unmatched pairs. 33078 records in RAM.
INFO	2026-06-08 08:49:01	MarkDuplicates	Read   277,000,000 records.  Elapsed time: 00:08:55s.  Time for last 1,000,000:    1s.  Last read position: chr9:107,300,188
INFO	2026-06-08 08:49:01	MarkDuplicates	Tracking 861044 as yet unmatched pairs. 31214 records in RAM.
INFO	2026-06-08 08:49:03	MarkDuplicates	Read   278,000,000 records.  Elapsed time: 00:08:57s.  Time for last 1,000,000:    1s.  Last read position: chr9:113,583,540
INFO	2026-06-08 08:49:03	MarkDuplicates	Tracking 858583 as yet unmatched pairs. 28753 records in RAM.
INFO	2026-06-08 08:49:04	MarkDuplicates	Read   279,000,000 records.  Elapsed time: 00:08:58s.  Time for last 1,000,000:    1s.  Last read position: chr9:114,337,216
INFO	2026-06-08 08:49:04	MarkDuplicates	Tracking 856320 as yet unmatched pairs. 26490 records in RAM.
INFO	2026-06-08 08:49:06	MarkDuplicates	Read   280,000,000 records.  Elapsed time: 00:09:00s.  Time for last 1,000,000:    1s.  Last read position: chr9:121,760,187
INFO	2026-06-08 08:49:06	MarkDuplicates	Tracking 853503 as yet unmatched pairs. 23672 records in RAM.
INFO	2026-06-08 08:49:07	MarkDuplicates	Read   281,000,000 records.  Elapsed time: 00:09:01s.  Time for last 1,000,000:    1s.  Last read position: chr9:126,833,206
INFO	2026-06-08 08:49:07	MarkDuplicates	Tracking 851198 as yet unmatched pairs. 21367 records in RAM.
INFO	2026-06-08 08:49:09	MarkDuplicates	Read   282,000,000 records.  Elapsed time: 00:09:03s.  Time for last 1,000,000:    1s.  Last read position: chr9:128,179,201
INFO	2026-06-08 08:49:09	MarkDuplicates	Tracking 849431 as yet unmatched pairs. 19599 records in RAM.
INFO	2026-06-08 08:49:11	MarkDuplicates	Read   283,000,000 records.  Elapsed time: 00:09:04s.  Time for last 1,000,000:    1s.  Last read position: chr9:128,936,466
INFO	2026-06-08 08:49:11	MarkDuplicates	Tracking 846252 as yet unmatched pairs. 16420 records in RAM.
INFO	2026-06-08 08:49:12	MarkDuplicates	Read   284,000,000 records.  Elapsed time: 00:09:06s.  Time for last 1,000,000:    1s.  Last read position: chr9:131,147,534
INFO	2026-06-08 08:49:12	MarkDuplicates	Tracking 844109 as yet unmatched pairs. 14267 records in RAM.
INFO	2026-06-08 08:49:14	MarkDuplicates	Read   285,000,000 records.  Elapsed time: 00:09:07s.  Time for last 1,000,000:    1s.  Last read position: chr9:133,101,639
INFO	2026-06-08 08:49:14	MarkDuplicates	Tracking 842073 as yet unmatched pairs. 12230 records in RAM.
INFO	2026-06-08 08:49:15	MarkDuplicates	Read   286,000,000 records.  Elapsed time: 00:09:09s.  Time for last 1,000,000:    1s.  Last read position: chr9:134,785,068
INFO	2026-06-08 08:49:15	MarkDuplicates	Tracking 839213 as yet unmatched pairs. 9326 records in RAM.
INFO	2026-06-08 08:49:17	MarkDuplicates	Read   287,000,000 records.  Elapsed time: 00:09:10s.  Time for last 1,000,000:    1s.  Last read position: chr9:136,474,905
INFO	2026-06-08 08:49:17	MarkDuplicates	Tracking 836626 as yet unmatched pairs. 6738 records in RAM.
INFO	2026-06-08 08:49:19	MarkDuplicates	Read   288,000,000 records.  Elapsed time: 00:09:12s.  Time for last 1,000,000:    1s.  Last read position: chr9:136,857,204
INFO	2026-06-08 08:49:19	MarkDuplicates	Tracking 833764 as yet unmatched pairs. 3874 records in RAM.
INFO	2026-06-08 08:49:20	MarkDuplicates	Read   289,000,000 records.  Elapsed time: 00:09:14s.  Time for last 1,000,000:    1s.  Last read position: chr9:137,434,027
INFO	2026-06-08 08:49:20	MarkDuplicates	Tracking 831228 as yet unmatched pairs. 1335 records in RAM.
INFO	2026-06-08 08:49:22	MarkDuplicates	Read   290,000,000 records.  Elapsed time: 00:09:16s.  Time for last 1,000,000:    1s.  Last read position: chr10:5,911,112
INFO	2026-06-08 08:49:22	MarkDuplicates	Tracking 828680 as yet unmatched pairs. 37690 records in RAM.
INFO	2026-06-08 08:49:24	MarkDuplicates	Read   291,000,000 records.  Elapsed time: 00:09:18s.  Time for last 1,000,000:    1s.  Last read position: chr10:17,229,718
INFO	2026-06-08 08:49:24	MarkDuplicates	Tracking 827626 as yet unmatched pairs. 36634 records in RAM.
INFO	2026-06-08 08:49:26	MarkDuplicates	Read   292,000,000 records.  Elapsed time: 00:09:20s.  Time for last 1,000,000:    2s.  Last read position: chr10:29,480,678
INFO	2026-06-08 08:49:26	MarkDuplicates	Tracking 824584 as yet unmatched pairs. 33568 records in RAM.
INFO	2026-06-08 08:49:28	MarkDuplicates	Read   293,000,000 records.  Elapsed time: 00:09:22s.  Time for last 1,000,000:    1s.  Last read position: chr10:32,923,593
INFO	2026-06-08 08:49:28	MarkDuplicates	Tracking 822861 as yet unmatched pairs. 31843 records in RAM.
INFO	2026-06-08 08:49:29	MarkDuplicates	Read   294,000,000 records.  Elapsed time: 00:09:23s.  Time for last 1,000,000:    1s.  Last read position: chr10:45,627,095
INFO	2026-06-08 08:49:29	MarkDuplicates	Tracking 820118 as yet unmatched pairs. 29097 records in RAM.
INFO	2026-06-08 08:49:31	MarkDuplicates	Read   295,000,000 records.  Elapsed time: 00:09:24s.  Time for last 1,000,000:    1s.  Last read position: chr10:48,031,391
INFO	2026-06-08 08:49:31	MarkDuplicates	Tracking 818712 as yet unmatched pairs. 27691 records in RAM.
INFO	2026-06-08 08:49:32	MarkDuplicates	Read   296,000,000 records.  Elapsed time: 00:09:26s.  Time for last 1,000,000:    1s.  Last read position: chr10:59,906,112
INFO	2026-06-08 08:49:32	MarkDuplicates	Tracking 817913 as yet unmatched pairs. 26890 records in RAM.
INFO	2026-06-08 08:49:34	MarkDuplicates	Read   297,000,000 records.  Elapsed time: 00:09:27s.  Time for last 1,000,000:    1s.  Last read position: chr10:70,230,355
INFO	2026-06-08 08:49:34	MarkDuplicates	Tracking 814861 as yet unmatched pairs. 23838 records in RAM.
INFO	2026-06-08 08:49:35	MarkDuplicates	Read   298,000,000 records.  Elapsed time: 00:09:29s.  Time for last 1,000,000:    1s.  Last read position: chr10:73,674,616
INFO	2026-06-08 08:49:35	MarkDuplicates	Tracking 812374 as yet unmatched pairs. 21343 records in RAM.
INFO	2026-06-08 08:49:37	MarkDuplicates	Read   299,000,000 records.  Elapsed time: 00:09:31s.  Time for last 1,000,000:    1s.  Last read position: chr10:75,029,108
INFO	2026-06-08 08:49:37	MarkDuplicates	Tracking 809734 as yet unmatched pairs. 18702 records in RAM.
INFO	2026-06-08 08:49:38	MarkDuplicates	Read   300,000,000 records.  Elapsed time: 00:09:32s.  Time for last 1,000,000:    1s.  Last read position: chr10:79,844,573
INFO	2026-06-08 08:49:38	MarkDuplicates	Tracking 807545 as yet unmatched pairs. 16512 records in RAM.
INFO	2026-06-08 08:49:40	MarkDuplicates	Read   301,000,000 records.  Elapsed time: 00:09:33s.  Time for last 1,000,000:    1s.  Last read position: chr10:89,701,668
INFO	2026-06-08 08:49:40	MarkDuplicates	Tracking 805481 as yet unmatched pairs. 14448 records in RAM.
INFO	2026-06-08 08:49:41	MarkDuplicates	Read   302,000,000 records.  Elapsed time: 00:09:35s.  Time for last 1,000,000:    1s.  Last read position: chr10:97,334,456
INFO	2026-06-08 08:49:41	MarkDuplicates	Tracking 803112 as yet unmatched pairs. 12079 records in RAM.
INFO	2026-06-08 08:49:43	MarkDuplicates	Read   303,000,000 records.  Elapsed time: 00:09:37s.  Time for last 1,000,000:    1s.  Last read position: chr10:101,667,886
INFO	2026-06-08 08:49:43	MarkDuplicates	Tracking 800816 as yet unmatched pairs. 9783 records in RAM.
INFO	2026-06-08 08:49:44	MarkDuplicates	Read   304,000,000 records.  Elapsed time: 00:09:38s.  Time for last 1,000,000:    1s.  Last read position: chr10:102,918,914
INFO	2026-06-08 08:49:44	MarkDuplicates	Tracking 798136 as yet unmatched pairs. 7099 records in RAM.
INFO	2026-06-08 08:49:46	MarkDuplicates	Read   305,000,000 records.  Elapsed time: 00:09:39s.  Time for last 1,000,000:    1s.  Last read position: chr10:116,929,965
INFO	2026-06-08 08:49:46	MarkDuplicates	Tracking 796232 as yet unmatched pairs. 5188 records in RAM.
INFO	2026-06-08 08:49:47	MarkDuplicates	Read   306,000,000 records.  Elapsed time: 00:09:41s.  Time for last 1,000,000:    1s.  Last read position: chr10:124,046,143
INFO	2026-06-08 08:49:47	MarkDuplicates	Tracking 794035 as yet unmatched pairs. 2989 records in RAM.
INFO	2026-06-08 08:49:49	MarkDuplicates	Read   307,000,000 records.  Elapsed time: 00:09:43s.  Time for last 1,000,000:    1s.  Last read position: chr10:133,271,017
INFO	2026-06-08 08:49:49	MarkDuplicates	Tracking 792077 as yet unmatched pairs. 1023 records in RAM.
INFO	2026-06-08 08:49:51	MarkDuplicates	Read   308,000,000 records.  Elapsed time: 00:09:45s.  Time for last 1,000,000:    2s.  Last read position: chr11:314,281
INFO	2026-06-08 08:49:51	MarkDuplicates	Tracking 791167 as yet unmatched pairs. 87831 records in RAM.
INFO	2026-06-08 08:49:53	MarkDuplicates	Read   309,000,000 records.  Elapsed time: 00:09:47s.  Time for last 1,000,000:    2s.  Last read position: chr11:596,979
INFO	2026-06-08 08:49:53	MarkDuplicates	Tracking 786972 as yet unmatched pairs. 83634 records in RAM.
INFO	2026-06-08 08:49:56	MarkDuplicates	Read   310,000,000 records.  Elapsed time: 00:09:50s.  Time for last 1,000,000:    3s.  Last read position: chr11:972,156
INFO	2026-06-08 08:49:56	MarkDuplicates	Tracking 784180 as yet unmatched pairs. 80839 records in RAM.
INFO	2026-06-08 08:49:58	MarkDuplicates	Read   311,000,000 records.  Elapsed time: 00:09:52s.  Time for last 1,000,000:    1s.  Last read position: chr11:2,929,256
INFO	2026-06-08 08:49:58	MarkDuplicates	Tracking 781250 as yet unmatched pairs. 77907 records in RAM.
INFO	2026-06-08 08:50:00	MarkDuplicates	Read   312,000,000 records.  Elapsed time: 00:09:53s.  Time for last 1,000,000:    1s.  Last read position: chr11:6,625,953
INFO	2026-06-08 08:50:00	MarkDuplicates	Tracking 778700 as yet unmatched pairs. 75351 records in RAM.
INFO	2026-06-08 08:50:02	MarkDuplicates	Read   313,000,000 records.  Elapsed time: 00:09:55s.  Time for last 1,000,000:    1s.  Last read position: chr11:10,799,099
INFO	2026-06-08 08:50:02	MarkDuplicates	Tracking 776870 as yet unmatched pairs. 73512 records in RAM.
INFO	2026-06-08 08:50:03	MarkDuplicates	Read   314,000,000 records.  Elapsed time: 00:09:57s.  Time for last 1,000,000:    1s.  Last read position: chr11:18,347,693
INFO	2026-06-08 08:50:03	MarkDuplicates	Tracking 774069 as yet unmatched pairs. 70708 records in RAM.
INFO	2026-06-08 08:50:05	MarkDuplicates	Read   315,000,000 records.  Elapsed time: 00:09:59s.  Time for last 1,000,000:    1s.  Last read position: chr11:34,090,581
INFO	2026-06-08 08:50:05	MarkDuplicates	Tracking 772263 as yet unmatched pairs. 68902 records in RAM.
INFO	2026-06-08 08:50:07	MarkDuplicates	Read   316,000,000 records.  Elapsed time: 00:10:01s.  Time for last 1,000,000:    1s.  Last read position: chr11:44,605,157
INFO	2026-06-08 08:50:07	MarkDuplicates	Tracking 769740 as yet unmatched pairs. 66376 records in RAM.
INFO	2026-06-08 08:50:09	MarkDuplicates	Read   317,000,000 records.  Elapsed time: 00:10:03s.  Time for last 1,000,000:    2s.  Last read position: chr11:47,216,872
INFO	2026-06-08 08:50:09	MarkDuplicates	Tracking 767406 as yet unmatched pairs. 64040 records in RAM.
INFO	2026-06-08 08:50:12	MarkDuplicates	Read   318,000,000 records.  Elapsed time: 00:10:05s.  Time for last 1,000,000:    2s.  Last read position: chr11:57,309,362
INFO	2026-06-08 08:50:12	MarkDuplicates	Tracking 765234 as yet unmatched pairs. 61868 records in RAM.
INFO	2026-06-08 08:50:13	MarkDuplicates	Read   319,000,000 records.  Elapsed time: 00:10:07s.  Time for last 1,000,000:    1s.  Last read position: chr11:57,811,461
INFO	2026-06-08 08:50:13	MarkDuplicates	Tracking 763557 as yet unmatched pairs. 60191 records in RAM.
INFO	2026-06-08 08:50:15	MarkDuplicates	Read   320,000,000 records.  Elapsed time: 00:10:09s.  Time for last 1,000,000:    1s.  Last read position: chr11:61,366,180
INFO	2026-06-08 08:50:15	MarkDuplicates	Tracking 760427 as yet unmatched pairs. 57061 records in RAM.
INFO	2026-06-08 08:50:16	MarkDuplicates	Read   321,000,000 records.  Elapsed time: 00:10:10s.  Time for last 1,000,000:    1s.  Last read position: chr11:62,521,086
INFO	2026-06-08 08:50:16	MarkDuplicates	Tracking 759064 as yet unmatched pairs. 55685 records in RAM.
INFO	2026-06-08 08:50:18	MarkDuplicates	Read   322,000,000 records.  Elapsed time: 00:10:12s.  Time for last 1,000,000:    1s.  Last read position: chr11:62,535,115
INFO	2026-06-08 08:50:18	MarkDuplicates	Tracking 756869 as yet unmatched pairs. 53490 records in RAM.
INFO	2026-06-08 08:50:19	MarkDuplicates	Read   323,000,000 records.  Elapsed time: 00:10:13s.  Time for last 1,000,000:    1s.  Last read position: chr11:62,881,030
INFO	2026-06-08 08:50:19	MarkDuplicates	Tracking 753720 as yet unmatched pairs. 50341 records in RAM.
INFO	2026-06-08 08:50:21	MarkDuplicates	Read   324,000,000 records.  Elapsed time: 00:10:15s.  Time for last 1,000,000:    1s.  Last read position: chr11:64,289,145
INFO	2026-06-08 08:50:21	MarkDuplicates	Tracking 751160 as yet unmatched pairs. 47780 records in RAM.
INFO	2026-06-08 08:50:23	MarkDuplicates	Read   325,000,000 records.  Elapsed time: 00:10:16s.  Time for last 1,000,000:    1s.  Last read position: chr11:65,120,697
INFO	2026-06-08 08:50:23	MarkDuplicates	Tracking 749676 as yet unmatched pairs. 46296 records in RAM.
INFO	2026-06-08 08:50:24	MarkDuplicates	Read   326,000,000 records.  Elapsed time: 00:10:18s.  Time for last 1,000,000:    1s.  Last read position: chr11:65,583,193
INFO	2026-06-08 08:50:24	MarkDuplicates	Tracking 746682 as yet unmatched pairs. 43301 records in RAM.
INFO	2026-06-08 08:50:26	MarkDuplicates	Read   327,000,000 records.  Elapsed time: 00:10:20s.  Time for last 1,000,000:    1s.  Last read position: chr11:65,655,745
INFO	2026-06-08 08:50:26	MarkDuplicates	Tracking 744400 as yet unmatched pairs. 41019 records in RAM.
INFO	2026-06-08 08:50:28	MarkDuplicates	Read   328,000,000 records.  Elapsed time: 00:10:22s.  Time for last 1,000,000:    1s.  Last read position: chr11:65,917,480
INFO	2026-06-08 08:50:28	MarkDuplicates	Tracking 741428 as yet unmatched pairs. 38047 records in RAM.
INFO	2026-06-08 08:50:30	MarkDuplicates	Read   329,000,000 records.  Elapsed time: 00:10:24s.  Time for last 1,000,000:    1s.  Last read position: chr11:66,335,799
INFO	2026-06-08 08:50:30	MarkDuplicates	Tracking 738928 as yet unmatched pairs. 35545 records in RAM.
INFO	2026-06-08 08:50:31	MarkDuplicates	Read   330,000,000 records.  Elapsed time: 00:10:25s.  Time for last 1,000,000:    1s.  Last read position: chr11:67,191,103
INFO	2026-06-08 08:50:31	MarkDuplicates	Tracking 736173 as yet unmatched pairs. 32787 records in RAM.
INFO	2026-06-08 08:50:34	MarkDuplicates	Read   331,000,000 records.  Elapsed time: 00:10:27s.  Time for last 1,000,000:    2s.  Last read position: chr11:67,464,783
INFO	2026-06-08 08:50:34	MarkDuplicates	Tracking 733684 as yet unmatched pairs. 30298 records in RAM.
INFO	2026-06-08 08:50:35	MarkDuplicates	Read   332,000,000 records.  Elapsed time: 00:10:29s.  Time for last 1,000,000:    1s.  Last read position: chr11:68,042,653
INFO	2026-06-08 08:50:35	MarkDuplicates	Tracking 732502 as yet unmatched pairs. 29116 records in RAM.
INFO	2026-06-08 08:50:37	MarkDuplicates	Read   333,000,000 records.  Elapsed time: 00:10:31s.  Time for last 1,000,000:    1s.  Last read position: chr11:68,892,241
INFO	2026-06-08 08:50:37	MarkDuplicates	Tracking 728594 as yet unmatched pairs. 25208 records in RAM.
INFO	2026-06-08 08:50:38	MarkDuplicates	Read   334,000,000 records.  Elapsed time: 00:10:32s.  Time for last 1,000,000:    1s.  Last read position: chr11:70,486,279
INFO	2026-06-08 08:50:38	MarkDuplicates	Tracking 726071 as yet unmatched pairs. 22685 records in RAM.
INFO	2026-06-08 08:50:40	MarkDuplicates	Read   335,000,000 records.  Elapsed time: 00:10:34s.  Time for last 1,000,000:    1s.  Last read position: chr11:72,237,540
INFO	2026-06-08 08:50:40	MarkDuplicates	Tracking 724516 as yet unmatched pairs. 21130 records in RAM.
INFO	2026-06-08 08:50:41	MarkDuplicates	Read   336,000,000 records.  Elapsed time: 00:10:35s.  Time for last 1,000,000:    1s.  Last read position: chr11:74,976,864
INFO	2026-06-08 08:50:41	MarkDuplicates	Tracking 721281 as yet unmatched pairs. 17894 records in RAM.
INFO	2026-06-08 08:50:43	MarkDuplicates	Read   337,000,000 records.  Elapsed time: 00:10:37s.  Time for last 1,000,000:    1s.  Last read position: chr11:78,209,508
INFO	2026-06-08 08:50:43	MarkDuplicates	Tracking 718948 as yet unmatched pairs. 15561 records in RAM.
INFO	2026-06-08 08:50:44	MarkDuplicates	Read   338,000,000 records.  Elapsed time: 00:10:38s.  Time for last 1,000,000:    1s.  Last read position: chr11:95,067,743
INFO	2026-06-08 08:50:44	MarkDuplicates	Tracking 716784 as yet unmatched pairs. 13396 records in RAM.
INFO	2026-06-08 08:50:46	MarkDuplicates	Read   339,000,000 records.  Elapsed time: 00:10:40s.  Time for last 1,000,000:    1s.  Last read position: chr11:110,236,099
INFO	2026-06-08 08:50:46	MarkDuplicates	Tracking 714710 as yet unmatched pairs. 11319 records in RAM.
INFO	2026-06-08 08:50:47	MarkDuplicates	Read   340,000,000 records.  Elapsed time: 00:10:41s.  Time for last 1,000,000:    1s.  Last read position: chr11:117,397,236
INFO	2026-06-08 08:50:47	MarkDuplicates	Tracking 712157 as yet unmatched pairs. 8766 records in RAM.
INFO	2026-06-08 08:50:49	MarkDuplicates	Read   341,000,000 records.  Elapsed time: 00:10:43s.  Time for last 1,000,000:    1s.  Last read position: chr11:118,893,883
INFO	2026-06-08 08:50:49	MarkDuplicates	Tracking 709827 as yet unmatched pairs. 6436 records in RAM.
INFO	2026-06-08 08:50:50	MarkDuplicates	Read   342,000,000 records.  Elapsed time: 00:10:44s.  Time for last 1,000,000:    1s.  Last read position: chr11:120,447,028
INFO	2026-06-08 08:50:50	MarkDuplicates	Tracking 707799 as yet unmatched pairs. 4408 records in RAM.
INFO	2026-06-08 08:50:53	MarkDuplicates	Read   343,000,000 records.  Elapsed time: 00:10:46s.  Time for last 1,000,000:    2s.  Last read position: chr11:126,268,724
INFO	2026-06-08 08:50:53	MarkDuplicates	Tracking 705465 as yet unmatched pairs. 2074 records in RAM.
INFO	2026-06-08 08:50:55	MarkDuplicates	Read   344,000,000 records.  Elapsed time: 00:10:49s.  Time for last 1,000,000:    2s.  Last read position: chr12:352,249
INFO	2026-06-08 08:50:55	MarkDuplicates	Tracking 703302 as yet unmatched pairs. 79846 records in RAM.
INFO	2026-06-08 08:50:57	MarkDuplicates	Read   345,000,000 records.  Elapsed time: 00:10:51s.  Time for last 1,000,000:    1s.  Last read position: chr12:4,276,195
INFO	2026-06-08 08:50:57	MarkDuplicates	Tracking 700932 as yet unmatched pairs. 77475 records in RAM.
INFO	2026-06-08 08:50:58	MarkDuplicates	Read   346,000,000 records.  Elapsed time: 00:10:52s.  Time for last 1,000,000:    1s.  Last read position: chr12:6,528,735
INFO	2026-06-08 08:50:58	MarkDuplicates	Tracking 698826 as yet unmatched pairs. 75369 records in RAM.
INFO	2026-06-08 08:51:00	MarkDuplicates	Read   347,000,000 records.  Elapsed time: 00:10:54s.  Time for last 1,000,000:    2s.  Last read position: chr12:6,870,277
INFO	2026-06-08 08:51:00	MarkDuplicates	Tracking 696758 as yet unmatched pairs. 73300 records in RAM.
INFO	2026-06-08 08:51:02	MarkDuplicates	Read   348,000,000 records.  Elapsed time: 00:10:56s.  Time for last 1,000,000:    1s.  Last read position: chr12:7,375,573
INFO	2026-06-08 08:51:02	MarkDuplicates	Tracking 693508 as yet unmatched pairs. 70049 records in RAM.
INFO	2026-06-08 08:51:04	MarkDuplicates	Read   349,000,000 records.  Elapsed time: 00:10:57s.  Time for last 1,000,000:    1s.  Last read position: chr12:7,922,856
INFO	2026-06-08 08:51:04	MarkDuplicates	Tracking 691291 as yet unmatched pairs. 67832 records in RAM.
INFO	2026-06-08 08:51:05	MarkDuplicates	Read   350,000,000 records.  Elapsed time: 00:10:59s.  Time for last 1,000,000:    1s.  Last read position: chr12:12,181,270
INFO	2026-06-08 08:51:05	MarkDuplicates	Tracking 688850 as yet unmatched pairs. 65391 records in RAM.
INFO	2026-06-08 08:51:07	MarkDuplicates	Read   351,000,000 records.  Elapsed time: 00:11:01s.  Time for last 1,000,000:    1s.  Last read position: chr12:26,436,302
INFO	2026-06-08 08:51:07	MarkDuplicates	Tracking 686857 as yet unmatched pairs. 63395 records in RAM.
INFO	2026-06-08 08:51:08	MarkDuplicates	Read   352,000,000 records.  Elapsed time: 00:11:02s.  Time for last 1,000,000:    1s.  Last read position: chr12:32,742,735
INFO	2026-06-08 08:51:08	MarkDuplicates	Tracking 684899 as yet unmatched pairs. 61434 records in RAM.
INFO	2026-06-08 08:51:10	MarkDuplicates	Read   353,000,000 records.  Elapsed time: 00:11:03s.  Time for last 1,000,000:    1s.  Last read position: chr12:48,654,029
INFO	2026-06-08 08:51:10	MarkDuplicates	Tracking 682585 as yet unmatched pairs. 59119 records in RAM.
INFO	2026-06-08 08:51:11	MarkDuplicates	Read   354,000,000 records.  Elapsed time: 00:11:05s.  Time for last 1,000,000:    1s.  Last read position: chr12:49,050,893
INFO	2026-06-08 08:51:11	MarkDuplicates	Tracking 681449 as yet unmatched pairs. 57981 records in RAM.
INFO	2026-06-08 08:51:13	MarkDuplicates	Read   355,000,000 records.  Elapsed time: 00:11:07s.  Time for last 1,000,000:    1s.  Last read position: chr12:49,272,539
INFO	2026-06-08 08:51:13	MarkDuplicates	Tracking 681744 as yet unmatched pairs. 58275 records in RAM.
INFO	2026-06-08 08:51:14	MarkDuplicates	Read   356,000,000 records.  Elapsed time: 00:11:08s.  Time for last 1,000,000:    1s.  Last read position: chr12:51,067,906
INFO	2026-06-08 08:51:14	MarkDuplicates	Tracking 676523 as yet unmatched pairs. 53053 records in RAM.
INFO	2026-06-08 08:51:16	MarkDuplicates	Read   357,000,000 records.  Elapsed time: 00:11:09s.  Time for last 1,000,000:    1s.  Last read position: chr12:52,949,352
INFO	2026-06-08 08:51:16	MarkDuplicates	Tracking 675864 as yet unmatched pairs. 52392 records in RAM.
INFO	2026-06-08 08:51:17	MarkDuplicates	Read   358,000,000 records.  Elapsed time: 00:11:11s.  Time for last 1,000,000:    1s.  Last read position: chr12:53,382,592
INFO	2026-06-08 08:51:17	MarkDuplicates	Tracking 672128 as yet unmatched pairs. 48656 records in RAM.
INFO	2026-06-08 08:51:19	MarkDuplicates	Read   359,000,000 records.  Elapsed time: 00:11:13s.  Time for last 1,000,000:    1s.  Last read position: chr12:54,282,862
INFO	2026-06-08 08:51:19	MarkDuplicates	Tracking 670524 as yet unmatched pairs. 47052 records in RAM.
INFO	2026-06-08 08:51:21	MarkDuplicates	Read   360,000,000 records.  Elapsed time: 00:11:14s.  Time for last 1,000,000:    1s.  Last read position: chr12:55,991,365
INFO	2026-06-08 08:51:21	MarkDuplicates	Tracking 668061 as yet unmatched pairs. 44589 records in RAM.
INFO	2026-06-08 08:51:22	MarkDuplicates	Read   361,000,000 records.  Elapsed time: 00:11:16s.  Time for last 1,000,000:    1s.  Last read position: chr12:56,350,402
INFO	2026-06-08 08:51:22	MarkDuplicates	Tracking 665836 as yet unmatched pairs. 42364 records in RAM.
INFO	2026-06-08 08:51:24	MarkDuplicates	Read   362,000,000 records.  Elapsed time: 00:11:18s.  Time for last 1,000,000:    1s.  Last read position: chr12:57,091,301
INFO	2026-06-08 08:51:24	MarkDuplicates	Tracking 663832 as yet unmatched pairs. 40358 records in RAM.
INFO	2026-06-08 08:51:26	MarkDuplicates	Read   363,000,000 records.  Elapsed time: 00:11:20s.  Time for last 1,000,000:    1s.  Last read position: chr12:57,178,524
INFO	2026-06-08 08:51:26	MarkDuplicates	Tracking 661802 as yet unmatched pairs. 38328 records in RAM.
INFO	2026-06-08 08:51:28	MarkDuplicates	Read   364,000,000 records.  Elapsed time: 00:11:22s.  Time for last 1,000,000:    2s.  Last read position: chr12:57,516,996
INFO	2026-06-08 08:51:28	MarkDuplicates	Tracking 659027 as yet unmatched pairs. 35553 records in RAM.
INFO	2026-06-08 08:51:30	MarkDuplicates	Read   365,000,000 records.  Elapsed time: 00:11:24s.  Time for last 1,000,000:    1s.  Last read position: chr12:64,740,659
INFO	2026-06-08 08:51:30	MarkDuplicates	Tracking 656634 as yet unmatched pairs. 33158 records in RAM.
INFO	2026-06-08 08:51:32	MarkDuplicates	Read   366,000,000 records.  Elapsed time: 00:11:25s.  Time for last 1,000,000:    1s.  Last read position: chr12:76,030,026
INFO	2026-06-08 08:51:32	MarkDuplicates	Tracking 655474 as yet unmatched pairs. 31998 records in RAM.
INFO	2026-06-08 08:51:33	MarkDuplicates	Read   367,000,000 records.  Elapsed time: 00:11:27s.  Time for last 1,000,000:    1s.  Last read position: chr12:94,581,762
INFO	2026-06-08 08:51:33	MarkDuplicates	Tracking 652399 as yet unmatched pairs. 28922 records in RAM.
INFO	2026-06-08 08:51:35	MarkDuplicates	Read   368,000,000 records.  Elapsed time: 00:11:28s.  Time for last 1,000,000:    1s.  Last read position: chr12:103,942,652
INFO	2026-06-08 08:51:35	MarkDuplicates	Tracking 650563 as yet unmatched pairs. 27082 records in RAM.
INFO	2026-06-08 08:51:36	MarkDuplicates	Read   369,000,000 records.  Elapsed time: 00:11:30s.  Time for last 1,000,000:    1s.  Last read position: chr12:108,290,590
INFO	2026-06-08 08:51:36	MarkDuplicates	Tracking 648440 as yet unmatched pairs. 24959 records in RAM.
INFO	2026-06-08 08:51:38	MarkDuplicates	Read   370,000,000 records.  Elapsed time: 00:11:31s.  Time for last 1,000,000:    1s.  Last read position: chr12:110,445,463
INFO	2026-06-08 08:51:38	MarkDuplicates	Tracking 646330 as yet unmatched pairs. 22848 records in RAM.
INFO	2026-06-08 08:51:39	MarkDuplicates	Read   371,000,000 records.  Elapsed time: 00:11:33s.  Time for last 1,000,000:    1s.  Last read position: chr12:112,408,442
INFO	2026-06-08 08:51:39	MarkDuplicates	Tracking 644109 as yet unmatched pairs. 20623 records in RAM.
INFO	2026-06-08 08:51:41	MarkDuplicates	Read   372,000,000 records.  Elapsed time: 00:11:35s.  Time for last 1,000,000:    1s.  Last read position: chr12:113,959,881
INFO	2026-06-08 08:51:41	MarkDuplicates	Tracking 641287 as yet unmatched pairs. 17799 records in RAM.
INFO	2026-06-08 08:51:42	MarkDuplicates	Read   373,000,000 records.  Elapsed time: 00:11:36s.  Time for last 1,000,000:    1s.  Last read position: chr12:120,177,537
INFO	2026-06-08 08:51:42	MarkDuplicates	Tracking 639731 as yet unmatched pairs. 16239 records in RAM.
INFO	2026-06-08 08:51:44	MarkDuplicates	Read   374,000,000 records.  Elapsed time: 00:11:38s.  Time for last 1,000,000:    1s.  Last read position: chr12:121,423,389
INFO	2026-06-08 08:51:44	MarkDuplicates	Tracking 636898 as yet unmatched pairs. 13406 records in RAM.
INFO	2026-06-08 08:51:45	MarkDuplicates	Read   375,000,000 records.  Elapsed time: 00:11:39s.  Time for last 1,000,000:    1s.  Last read position: chr12:122,481,635
INFO	2026-06-08 08:51:45	MarkDuplicates	Tracking 634299 as yet unmatched pairs. 10807 records in RAM.
INFO	2026-06-08 08:51:47	MarkDuplicates	Read   376,000,000 records.  Elapsed time: 00:11:41s.  Time for last 1,000,000:    1s.  Last read position: chr12:124,325,520
INFO	2026-06-08 08:51:47	MarkDuplicates	Tracking 632321 as yet unmatched pairs. 8828 records in RAM.
INFO	2026-06-08 08:51:48	MarkDuplicates	Read   377,000,000 records.  Elapsed time: 00:11:42s.  Time for last 1,000,000:    1s.  Last read position: chr12:124,778,460
INFO	2026-06-08 08:51:48	MarkDuplicates	Tracking 629659 as yet unmatched pairs. 6166 records in RAM.
INFO	2026-06-08 08:51:50	MarkDuplicates	Read   378,000,000 records.  Elapsed time: 00:11:44s.  Time for last 1,000,000:    1s.  Last read position: chr12:132,029,836
INFO	2026-06-08 08:51:50	MarkDuplicates	Tracking 627341 as yet unmatched pairs. 3848 records in RAM.
INFO	2026-06-08 08:51:52	MarkDuplicates	Read   379,000,000 records.  Elapsed time: 00:11:45s.  Time for last 1,000,000:    1s.  Last read position: chr12:132,783,983
INFO	2026-06-08 08:51:52	MarkDuplicates	Tracking 624921 as yet unmatched pairs. 1428 records in RAM.
INFO	2026-06-08 08:51:54	MarkDuplicates	Read   380,000,000 records.  Elapsed time: 00:11:48s.  Time for last 1,000,000:    2s.  Last read position: chr13:20,975,213
INFO	2026-06-08 08:51:54	MarkDuplicates	Tracking 622255 as yet unmatched pairs. 14903 records in RAM.
INFO	2026-06-08 08:51:56	MarkDuplicates	Read   381,000,000 records.  Elapsed time: 00:11:49s.  Time for last 1,000,000:    1s.  Last read position: chr13:29,523,394
INFO	2026-06-08 08:51:56	MarkDuplicates	Tracking 620273 as yet unmatched pairs. 12916 records in RAM.
INFO	2026-06-08 08:51:58	MarkDuplicates	Read   382,000,000 records.  Elapsed time: 00:11:52s.  Time for last 1,000,000:    2s.  Last read position: chr13:42,299,451
INFO	2026-06-08 08:51:58	MarkDuplicates	Tracking 617900 as yet unmatched pairs. 10516 records in RAM.
INFO	2026-06-08 08:52:00	MarkDuplicates	Read   383,000,000 records.  Elapsed time: 00:11:54s.  Time for last 1,000,000:    1s.  Last read position: chr13:49,495,999
INFO	2026-06-08 08:52:00	MarkDuplicates	Tracking 615761 as yet unmatched pairs. 8376 records in RAM.
INFO	2026-06-08 08:52:01	MarkDuplicates	Read   384,000,000 records.  Elapsed time: 00:11:55s.  Time for last 1,000,000:    1s.  Last read position: chr13:95,986,412
INFO	2026-06-08 08:52:01	MarkDuplicates	Tracking 613614 as yet unmatched pairs. 6226 records in RAM.
INFO	2026-06-08 08:52:03	MarkDuplicates	Read   385,000,000 records.  Elapsed time: 00:11:57s.  Time for last 1,000,000:    1s.  Last read position: chr13:110,207,402
INFO	2026-06-08 08:52:03	MarkDuplicates	Tracking 611246 as yet unmatched pairs. 3856 records in RAM.
INFO	2026-06-08 08:52:05	MarkDuplicates	Read   386,000,000 records.  Elapsed time: 00:11:58s.  Time for last 1,000,000:    1s.  Last read position: chr13:113,229,684
INFO	2026-06-08 08:52:05	MarkDuplicates	Tracking 608561 as yet unmatched pairs. 1171 records in RAM.
INFO	2026-06-08 08:52:07	MarkDuplicates	Read   387,000,000 records.  Elapsed time: 00:12:00s.  Time for last 1,000,000:    2s.  Last read position: chr14:20,994,017
INFO	2026-06-08 08:52:07	MarkDuplicates	Tracking 606445 as yet unmatched pairs. 54061 records in RAM.
INFO	2026-06-08 08:52:08	MarkDuplicates	Read   388,000,000 records.  Elapsed time: 00:12:02s.  Time for last 1,000,000:    1s.  Last read position: chr14:22,877,370
INFO	2026-06-08 08:52:08	MarkDuplicates	Tracking 604487 as yet unmatched pairs. 52103 records in RAM.
INFO	2026-06-08 08:52:10	MarkDuplicates	Read   389,000,000 records.  Elapsed time: 00:12:04s.  Time for last 1,000,000:    1s.  Last read position: chr14:23,643,192
INFO	2026-06-08 08:52:10	MarkDuplicates	Tracking 606927 as yet unmatched pairs. 54542 records in RAM.
INFO	2026-06-08 08:52:12	MarkDuplicates	Read   390,000,000 records.  Elapsed time: 00:12:05s.  Time for last 1,000,000:    1s.  Last read position: chr14:24,218,074
INFO	2026-06-08 08:52:12	MarkDuplicates	Tracking 599241 as yet unmatched pairs. 46856 records in RAM.
INFO	2026-06-08 08:52:13	MarkDuplicates	Read   391,000,000 records.  Elapsed time: 00:12:07s.  Time for last 1,000,000:    1s.  Last read position: chr14:33,950,636
INFO	2026-06-08 08:52:13	MarkDuplicates	Tracking 597492 as yet unmatched pairs. 45106 records in RAM.
INFO	2026-06-08 08:52:15	MarkDuplicates	Read   392,000,000 records.  Elapsed time: 00:12:09s.  Time for last 1,000,000:    1s.  Last read position: chr14:49,585,973
INFO	2026-06-08 08:52:15	MarkDuplicates	Tracking 595273 as yet unmatched pairs. 42884 records in RAM.
INFO	2026-06-08 08:52:17	MarkDuplicates	Read   393,000,000 records.  Elapsed time: 00:12:10s.  Time for last 1,000,000:    1s.  Last read position: chr14:52,315,010
INFO	2026-06-08 08:52:17	MarkDuplicates	Tracking 592385 as yet unmatched pairs. 39991 records in RAM.
INFO	2026-06-08 08:52:18	MarkDuplicates	Read   394,000,000 records.  Elapsed time: 00:12:12s.  Time for last 1,000,000:    1s.  Last read position: chr14:58,215,256
INFO	2026-06-08 08:52:18	MarkDuplicates	Tracking 590184 as yet unmatched pairs. 37789 records in RAM.
INFO	2026-06-08 08:52:20	MarkDuplicates	Read   395,000,000 records.  Elapsed time: 00:12:14s.  Time for last 1,000,000:    1s.  Last read position: chr14:64,052,160
INFO	2026-06-08 08:52:20	MarkDuplicates	Tracking 588164 as yet unmatched pairs. 35769 records in RAM.
INFO	2026-06-08 08:52:21	MarkDuplicates	Read   396,000,000 records.  Elapsed time: 00:12:15s.  Time for last 1,000,000:    1s.  Last read position: chr14:67,380,659
INFO	2026-06-08 08:52:21	MarkDuplicates	Tracking 585828 as yet unmatched pairs. 33433 records in RAM.
INFO	2026-06-08 08:52:23	MarkDuplicates	Read   397,000,000 records.  Elapsed time: 00:12:17s.  Time for last 1,000,000:    1s.  Last read position: chr14:68,887,851
INFO	2026-06-08 08:52:23	MarkDuplicates	Tracking 583982 as yet unmatched pairs. 31587 records in RAM.
INFO	2026-06-08 08:52:25	MarkDuplicates	Read   398,000,000 records.  Elapsed time: 00:12:19s.  Time for last 1,000,000:    1s.  Last read position: chr14:70,808,839
INFO	2026-06-08 08:52:25	MarkDuplicates	Tracking 582456 as yet unmatched pairs. 30058 records in RAM.
INFO	2026-06-08 08:52:26	MarkDuplicates	Read   399,000,000 records.  Elapsed time: 00:12:20s.  Time for last 1,000,000:    1s.  Last read position: chr14:73,252,089
INFO	2026-06-08 08:52:26	MarkDuplicates	Tracking 579538 as yet unmatched pairs. 27140 records in RAM.
INFO	2026-06-08 08:52:28	MarkDuplicates	Read   400,000,000 records.  Elapsed time: 00:12:21s.  Time for last 1,000,000:    1s.  Last read position: chr14:74,484,418
INFO	2026-06-08 08:52:28	MarkDuplicates	Tracking 577173 as yet unmatched pairs. 24775 records in RAM.
INFO	2026-06-08 08:52:29	MarkDuplicates	Read   401,000,000 records.  Elapsed time: 00:12:23s.  Time for last 1,000,000:    1s.  Last read position: chr14:74,782,265
INFO	2026-06-08 08:52:29	MarkDuplicates	Tracking 574087 as yet unmatched pairs. 21689 records in RAM.
INFO	2026-06-08 08:52:31	MarkDuplicates	Read   402,000,000 records.  Elapsed time: 00:12:25s.  Time for last 1,000,000:    1s.  Last read position: chr14:76,790,698
INFO	2026-06-08 08:52:31	MarkDuplicates	Tracking 571774 as yet unmatched pairs. 19376 records in RAM.
INFO	2026-06-08 08:52:32	MarkDuplicates	Read   403,000,000 records.  Elapsed time: 00:12:26s.  Time for last 1,000,000:    1s.  Last read position: chr14:90,401,258
INFO	2026-06-08 08:52:32	MarkDuplicates	Tracking 569983 as yet unmatched pairs. 17581 records in RAM.
INFO	2026-06-08 08:52:34	MarkDuplicates	Read   404,000,000 records.  Elapsed time: 00:12:28s.  Time for last 1,000,000:    1s.  Last read position: chr14:99,502,808
INFO	2026-06-08 08:52:34	MarkDuplicates	Tracking 567122 as yet unmatched pairs. 14699 records in RAM.
INFO	2026-06-08 08:52:35	MarkDuplicates	Read   405,000,000 records.  Elapsed time: 00:12:29s.  Time for last 1,000,000:    1s.  Last read position: chr14:102,986,533
INFO	2026-06-08 08:52:35	MarkDuplicates	Tracking 564866 as yet unmatched pairs. 12442 records in RAM.
INFO	2026-06-08 08:52:37	MarkDuplicates	Read   406,000,000 records.  Elapsed time: 00:12:30s.  Time for last 1,000,000:    1s.  Last read position: chr14:105,011,180
INFO	2026-06-08 08:52:37	MarkDuplicates	Tracking 562281 as yet unmatched pairs. 9857 records in RAM.
INFO	2026-06-08 08:52:38	MarkDuplicates	Read   407,000,000 records.  Elapsed time: 00:12:32s.  Time for last 1,000,000:    1s.  Last read position: chr14:105,643,225
INFO	2026-06-08 08:52:38	MarkDuplicates	Tracking 561234 as yet unmatched pairs. 8810 records in RAM.
INFO	2026-06-08 08:52:40	MarkDuplicates	Read   408,000,000 records.  Elapsed time: 00:12:34s.  Time for last 1,000,000:    1s.  Last read position: chr14:105,737,773
INFO	2026-06-08 08:52:40	MarkDuplicates	Tracking 562127 as yet unmatched pairs. 9703 records in RAM.
INFO	2026-06-08 08:52:41	MarkDuplicates	Read   409,000,000 records.  Elapsed time: 00:12:35s.  Time for last 1,000,000:    1s.  Last read position: chr14:105,741,650
INFO	2026-06-08 08:52:41	MarkDuplicates	Tracking 573441 as yet unmatched pairs. 21017 records in RAM.
INFO	2026-06-08 08:52:42	MarkDuplicates	Read   410,000,000 records.  Elapsed time: 00:12:36s.  Time for last 1,000,000:    1s.  Last read position: chr14:105,742,087
INFO	2026-06-08 08:52:42	MarkDuplicates	Tracking 560549 as yet unmatched pairs. 8125 records in RAM.
INFO	2026-06-08 08:52:44	MarkDuplicates	Read   411,000,000 records.  Elapsed time: 00:12:38s.  Time for last 1,000,000:    1s.  Last read position: chr14:105,742,883
INFO	2026-06-08 08:52:44	MarkDuplicates	Tracking 574531 as yet unmatched pairs. 22107 records in RAM.
INFO	2026-06-08 08:52:46	MarkDuplicates	Read   412,000,000 records.  Elapsed time: 00:12:39s.  Time for last 1,000,000:    1s.  Last read position: chr14:105,854,357
INFO	2026-06-08 08:52:46	MarkDuplicates	Tracking 554048 as yet unmatched pairs. 1623 records in RAM.
INFO	2026-06-08 08:52:47	MarkDuplicates	Read   413,000,000 records.  Elapsed time: 00:12:41s.  Time for last 1,000,000:    1s.  Last read position: chr15:28,130,292
INFO	2026-06-08 08:52:47	MarkDuplicates	Tracking 551483 as yet unmatched pairs. 34154 records in RAM.
INFO	2026-06-08 08:52:49	MarkDuplicates	Read   414,000,000 records.  Elapsed time: 00:12:42s.  Time for last 1,000,000:    1s.  Last read position: chr15:34,038,850
INFO	2026-06-08 08:52:49	MarkDuplicates	Tracking 549559 as yet unmatched pairs. 32230 records in RAM.
INFO	2026-06-08 08:52:50	MarkDuplicates	Read   415,000,000 records.  Elapsed time: 00:12:44s.  Time for last 1,000,000:    1s.  Last read position: chr15:40,367,597
INFO	2026-06-08 08:52:50	MarkDuplicates	Tracking 547609 as yet unmatched pairs. 30278 records in RAM.
INFO	2026-06-08 08:52:53	MarkDuplicates	Read   416,000,000 records.  Elapsed time: 00:12:47s.  Time for last 1,000,000:    2s.  Last read position: chr15:42,068,913
INFO	2026-06-08 08:52:53	MarkDuplicates	Tracking 545235 as yet unmatched pairs. 27903 records in RAM.
INFO	2026-06-08 08:52:55	MarkDuplicates	Read   417,000,000 records.  Elapsed time: 00:12:49s.  Time for last 1,000,000:    2s.  Last read position: chr15:44,561,063
INFO	2026-06-08 08:52:55	MarkDuplicates	Tracking 543292 as yet unmatched pairs. 25960 records in RAM.
INFO	2026-06-08 08:52:57	MarkDuplicates	Read   418,000,000 records.  Elapsed time: 00:12:51s.  Time for last 1,000,000:    1s.  Last read position: chr15:55,740,638
INFO	2026-06-08 08:52:57	MarkDuplicates	Tracking 541034 as yet unmatched pairs. 23699 records in RAM.
INFO	2026-06-08 08:52:58	MarkDuplicates	Read   419,000,000 records.  Elapsed time: 00:12:52s.  Time for last 1,000,000:    1s.  Last read position: chr15:62,164,204
INFO	2026-06-08 08:52:58	MarkDuplicates	Tracking 538706 as yet unmatched pairs. 21371 records in RAM.
INFO	2026-06-08 08:53:00	MarkDuplicates	Read   420,000,000 records.  Elapsed time: 00:12:54s.  Time for last 1,000,000:    1s.  Last read position: chr15:65,391,886
INFO	2026-06-08 08:53:00	MarkDuplicates	Tracking 536607 as yet unmatched pairs. 19271 records in RAM.
INFO	2026-06-08 08:53:02	MarkDuplicates	Read   421,000,000 records.  Elapsed time: 00:12:55s.  Time for last 1,000,000:    1s.  Last read position: chr15:70,056,363
INFO	2026-06-08 08:53:02	MarkDuplicates	Tracking 534112 as yet unmatched pairs. 16776 records in RAM.
INFO	2026-06-08 08:53:03	MarkDuplicates	Read   422,000,000 records.  Elapsed time: 00:12:57s.  Time for last 1,000,000:    1s.  Last read position: chr15:73,712,947
INFO	2026-06-08 08:53:03	MarkDuplicates	Tracking 531634 as yet unmatched pairs. 14298 records in RAM.
INFO	2026-06-08 08:53:05	MarkDuplicates	Read   423,000,000 records.  Elapsed time: 00:12:58s.  Time for last 1,000,000:    1s.  Last read position: chr15:74,799,482
INFO	2026-06-08 08:53:05	MarkDuplicates	Tracking 529267 as yet unmatched pairs. 11931 records in RAM.
INFO	2026-06-08 08:53:06	MarkDuplicates	Read   424,000,000 records.  Elapsed time: 00:13:00s.  Time for last 1,000,000:    1s.  Last read position: chr15:77,181,572
INFO	2026-06-08 08:53:06	MarkDuplicates	Tracking 526801 as yet unmatched pairs. 9465 records in RAM.
INFO	2026-06-08 08:53:08	MarkDuplicates	Read   425,000,000 records.  Elapsed time: 00:13:01s.  Time for last 1,000,000:    1s.  Last read position: chr15:84,476,227
INFO	2026-06-08 08:53:08	MarkDuplicates	Tracking 524655 as yet unmatched pairs. 7316 records in RAM.
INFO	2026-06-08 08:53:09	MarkDuplicates	Read   426,000,000 records.  Elapsed time: 00:13:03s.  Time for last 1,000,000:    1s.  Last read position: chr15:89,799,555
INFO	2026-06-08 08:53:09	MarkDuplicates	Tracking 522537 as yet unmatched pairs. 5196 records in RAM.
INFO	2026-06-08 08:53:11	MarkDuplicates	Read   427,000,000 records.  Elapsed time: 00:13:05s.  Time for last 1,000,000:    1s.  Last read position: chr15:90,890,163
INFO	2026-06-08 08:53:11	MarkDuplicates	Tracking 520119 as yet unmatched pairs. 2777 records in RAM.
INFO	2026-06-08 08:53:12	MarkDuplicates	Read   428,000,000 records.  Elapsed time: 00:13:06s.  Time for last 1,000,000:    1s.  Last read position: chr15:101,974,206
INFO	2026-06-08 08:53:12	MarkDuplicates	Tracking 517365 as yet unmatched pairs. 20 records in RAM.
INFO	2026-06-08 08:53:14	MarkDuplicates	Read   429,000,000 records.  Elapsed time: 00:13:08s.  Time for last 1,000,000:    2s.  Last read position: chr16:656,496
INFO	2026-06-08 08:53:14	MarkDuplicates	Tracking 515126 as yet unmatched pairs. 75898 records in RAM.
INFO	2026-06-08 08:53:16	MarkDuplicates	Read   430,000,000 records.  Elapsed time: 00:13:10s.  Time for last 1,000,000:    1s.  Last read position: chr16:1,534,219
INFO	2026-06-08 08:53:16	MarkDuplicates	Tracking 512201 as yet unmatched pairs. 72973 records in RAM.
INFO	2026-06-08 08:53:18	MarkDuplicates	Read   431,000,000 records.  Elapsed time: 00:13:12s.  Time for last 1,000,000:    1s.  Last read position: chr16:2,089,938
INFO	2026-06-08 08:53:18	MarkDuplicates	Tracking 509719 as yet unmatched pairs. 70490 records in RAM.
INFO	2026-06-08 08:53:19	MarkDuplicates	Read   432,000,000 records.  Elapsed time: 00:13:13s.  Time for last 1,000,000:    1s.  Last read position: chr16:2,566,438
INFO	2026-06-08 08:53:19	MarkDuplicates	Tracking 506478 as yet unmatched pairs. 67249 records in RAM.
INFO	2026-06-08 08:53:21	MarkDuplicates	Read   433,000,000 records.  Elapsed time: 00:13:14s.  Time for last 1,000,000:    1s.  Last read position: chr16:2,768,026
INFO	2026-06-08 08:53:21	MarkDuplicates	Tracking 504925 as yet unmatched pairs. 65696 records in RAM.
INFO	2026-06-08 08:53:22	MarkDuplicates	Read   434,000,000 records.  Elapsed time: 00:13:16s.  Time for last 1,000,000:    1s.  Last read position: chr16:3,592,762
INFO	2026-06-08 08:53:22	MarkDuplicates	Tracking 501999 as yet unmatched pairs. 62769 records in RAM.
INFO	2026-06-08 08:53:24	MarkDuplicates	Read   435,000,000 records.  Elapsed time: 00:13:18s.  Time for last 1,000,000:    1s.  Last read position: chr16:4,883,624
INFO	2026-06-08 08:53:24	MarkDuplicates	Tracking 499493 as yet unmatched pairs. 60263 records in RAM.
INFO	2026-06-08 08:53:26	MarkDuplicates	Read   436,000,000 records.  Elapsed time: 00:13:19s.  Time for last 1,000,000:    1s.  Last read position: chr16:11,927,713
INFO	2026-06-08 08:53:26	MarkDuplicates	Tracking 497528 as yet unmatched pairs. 58298 records in RAM.
INFO	2026-06-08 08:53:27	MarkDuplicates	Read   437,000,000 records.  Elapsed time: 00:13:21s.  Time for last 1,000,000:    1s.  Last read position: chr16:14,928,403
INFO	2026-06-08 08:53:27	MarkDuplicates	Tracking 496149 as yet unmatched pairs. 56919 records in RAM.
INFO	2026-06-08 08:53:28	MarkDuplicates	Read   438,000,000 records.  Elapsed time: 00:13:22s.  Time for last 1,000,000:    1s.  Last read position: chr16:16,090,481
INFO	2026-06-08 08:53:28	MarkDuplicates	Tracking 494751 as yet unmatched pairs. 55521 records in RAM.
INFO	2026-06-08 08:53:30	MarkDuplicates	Read   439,000,000 records.  Elapsed time: 00:13:23s.  Time for last 1,000,000:    1s.  Last read position: chr16:16,334,105
INFO	2026-06-08 08:53:30	MarkDuplicates	Tracking 494018 as yet unmatched pairs. 54788 records in RAM.
INFO	2026-06-08 08:53:31	MarkDuplicates	Read   440,000,000 records.  Elapsed time: 00:13:25s.  Time for last 1,000,000:    1s.  Last read position: chr16:18,345,917
INFO	2026-06-08 08:53:31	MarkDuplicates	Tracking 493334 as yet unmatched pairs. 54104 records in RAM.
INFO	2026-06-08 08:53:32	MarkDuplicates	Read   441,000,000 records.  Elapsed time: 00:13:26s.  Time for last 1,000,000:    1s.  Last read position: chr16:18,417,793
INFO	2026-06-08 08:53:32	MarkDuplicates	Tracking 492008 as yet unmatched pairs. 52778 records in RAM.
INFO	2026-06-08 08:53:33	MarkDuplicates	Read   442,000,000 records.  Elapsed time: 00:13:27s.  Time for last 1,000,000:    1s.  Last read position: chr16:19,767,410
INFO	2026-06-08 08:53:33	MarkDuplicates	Tracking 490201 as yet unmatched pairs. 50971 records in RAM.
INFO	2026-06-08 08:53:35	MarkDuplicates	Read   443,000,000 records.  Elapsed time: 00:13:28s.  Time for last 1,000,000:    1s.  Last read position: chr16:21,406,667
INFO	2026-06-08 08:53:35	MarkDuplicates	Tracking 490037 as yet unmatched pairs. 50807 records in RAM.
INFO	2026-06-08 08:53:36	MarkDuplicates	Read   444,000,000 records.  Elapsed time: 00:13:30s.  Time for last 1,000,000:    1s.  Last read position: chr16:21,837,404
INFO	2026-06-08 08:53:36	MarkDuplicates	Tracking 488610 as yet unmatched pairs. 49380 records in RAM.
INFO	2026-06-08 08:53:38	MarkDuplicates	Read   445,000,000 records.  Elapsed time: 00:13:31s.  Time for last 1,000,000:    1s.  Last read position: chr16:22,533,650
INFO	2026-06-08 08:53:38	MarkDuplicates	Tracking 487742 as yet unmatched pairs. 48511 records in RAM.
INFO	2026-06-08 08:53:39	MarkDuplicates	Read   446,000,000 records.  Elapsed time: 00:13:33s.  Time for last 1,000,000:    1s.  Last read position: chr16:23,069,031
INFO	2026-06-08 08:53:39	MarkDuplicates	Tracking 487173 as yet unmatched pairs. 47942 records in RAM.
INFO	2026-06-08 08:53:40	MarkDuplicates	Read   447,000,000 records.  Elapsed time: 00:13:34s.  Time for last 1,000,000:    1s.  Last read position: chr16:28,125,708
INFO	2026-06-08 08:53:40	MarkDuplicates	Tracking 484826 as yet unmatched pairs. 45594 records in RAM.
INFO	2026-06-08 08:53:42	MarkDuplicates	Read   448,000,000 records.  Elapsed time: 00:13:36s.  Time for last 1,000,000:    1s.  Last read position: chr16:28,835,667
INFO	2026-06-08 08:53:42	MarkDuplicates	Tracking 483655 as yet unmatched pairs. 44422 records in RAM.
INFO	2026-06-08 08:53:43	MarkDuplicates	Read   449,000,000 records.  Elapsed time: 00:13:37s.  Time for last 1,000,000:    1s.  Last read position: chr16:29,435,858
INFO	2026-06-08 08:53:43	MarkDuplicates	Tracking 482730 as yet unmatched pairs. 43497 records in RAM.
INFO	2026-06-08 08:53:46	MarkDuplicates	Read   450,000,000 records.  Elapsed time: 00:13:40s.  Time for last 1,000,000:    2s.  Last read position: chr16:29,554,967
INFO	2026-06-08 08:53:46	MarkDuplicates	Tracking 480902 as yet unmatched pairs. 41669 records in RAM.
INFO	2026-06-08 08:53:50	MarkDuplicates	Read   451,000,000 records.  Elapsed time: 00:13:43s.  Time for last 1,000,000:    3s.  Last read position: chr16:30,010,036
INFO	2026-06-08 08:53:50	MarkDuplicates	Tracking 478453 as yet unmatched pairs. 39219 records in RAM.
INFO	2026-06-08 08:53:52	MarkDuplicates	Read   452,000,000 records.  Elapsed time: 00:13:45s.  Time for last 1,000,000:    1s.  Last read position: chr16:30,223,069
INFO	2026-06-08 08:53:52	MarkDuplicates	Tracking 476330 as yet unmatched pairs. 37095 records in RAM.
INFO	2026-06-08 08:53:53	MarkDuplicates	Read   453,000,000 records.  Elapsed time: 00:13:47s.  Time for last 1,000,000:    1s.  Last read position: chr16:30,524,887
INFO	2026-06-08 08:53:53	MarkDuplicates	Tracking 475418 as yet unmatched pairs. 36183 records in RAM.
INFO	2026-06-08 08:53:55	MarkDuplicates	Read   454,000,000 records.  Elapsed time: 00:13:49s.  Time for last 1,000,000:    1s.  Last read position: chr16:30,757,464
INFO	2026-06-08 08:53:55	MarkDuplicates	Tracking 472771 as yet unmatched pairs. 33528 records in RAM.
INFO	2026-06-08 08:53:57	MarkDuplicates	Read   455,000,000 records.  Elapsed time: 00:13:51s.  Time for last 1,000,000:    1s.  Last read position: chr16:31,183,894
INFO	2026-06-08 08:53:57	MarkDuplicates	Tracking 472941 as yet unmatched pairs. 33697 records in RAM.
INFO	2026-06-08 08:53:59	MarkDuplicates	Read   456,000,000 records.  Elapsed time: 00:13:52s.  Time for last 1,000,000:    1s.  Last read position: chr16:47,463,923
INFO	2026-06-08 08:53:59	MarkDuplicates	Tracking 468271 as yet unmatched pairs. 29027 records in RAM.
INFO	2026-06-08 08:54:00	MarkDuplicates	Read   457,000,000 records.  Elapsed time: 00:13:54s.  Time for last 1,000,000:    1s.  Last read position: chr16:56,511,169
INFO	2026-06-08 08:54:00	MarkDuplicates	Tracking 466077 as yet unmatched pairs. 26828 records in RAM.
INFO	2026-06-08 08:54:02	MarkDuplicates	Read   458,000,000 records.  Elapsed time: 00:13:56s.  Time for last 1,000,000:    1s.  Last read position: chr16:57,039,810
INFO	2026-06-08 08:54:02	MarkDuplicates	Tracking 463636 as yet unmatched pairs. 24387 records in RAM.
INFO	2026-06-08 08:54:04	MarkDuplicates	Read   459,000,000 records.  Elapsed time: 00:13:58s.  Time for last 1,000,000:    1s.  Last read position: chr16:66,552,681
INFO	2026-06-08 08:54:04	MarkDuplicates	Tracking 461176 as yet unmatched pairs. 21925 records in RAM.
INFO	2026-06-08 08:54:06	MarkDuplicates	Read   460,000,000 records.  Elapsed time: 00:14:00s.  Time for last 1,000,000:    1s.  Last read position: chr16:67,657,637
INFO	2026-06-08 08:54:06	MarkDuplicates	Tracking 458569 as yet unmatched pairs. 19317 records in RAM.
INFO	2026-06-08 08:54:08	MarkDuplicates	Read   461,000,000 records.  Elapsed time: 00:14:02s.  Time for last 1,000,000:    1s.  Last read position: chr16:68,819,302
INFO	2026-06-08 08:54:08	MarkDuplicates	Tracking 455941 as yet unmatched pairs. 16689 records in RAM.
INFO	2026-06-08 08:54:09	MarkDuplicates	Read   462,000,000 records.  Elapsed time: 00:14:03s.  Time for last 1,000,000:    1s.  Last read position: chr16:70,535,305
INFO	2026-06-08 08:54:09	MarkDuplicates	Tracking 453669 as yet unmatched pairs. 14417 records in RAM.
INFO	2026-06-08 08:54:11	MarkDuplicates	Read   463,000,000 records.  Elapsed time: 00:14:05s.  Time for last 1,000,000:    1s.  Last read position: chr16:74,661,286
INFO	2026-06-08 08:54:11	MarkDuplicates	Tracking 451635 as yet unmatched pairs. 12383 records in RAM.
INFO	2026-06-08 08:54:14	MarkDuplicates	Read   464,000,000 records.  Elapsed time: 00:14:08s.  Time for last 1,000,000:    2s.  Last read position: chr16:84,179,063
INFO	2026-06-08 08:54:14	MarkDuplicates	Tracking 449494 as yet unmatched pairs. 10240 records in RAM.
INFO	2026-06-08 08:54:16	MarkDuplicates	Read   465,000,000 records.  Elapsed time: 00:14:09s.  Time for last 1,000,000:    1s.  Last read position: chr16:87,868,944
INFO	2026-06-08 08:54:16	MarkDuplicates	Tracking 447004 as yet unmatched pairs. 7748 records in RAM.
INFO	2026-06-08 08:54:17	MarkDuplicates	Read   466,000,000 records.  Elapsed time: 00:14:11s.  Time for last 1,000,000:    1s.  Last read position: chr16:88,720,269
INFO	2026-06-08 08:54:17	MarkDuplicates	Tracking 444540 as yet unmatched pairs. 5281 records in RAM.
INFO	2026-06-08 08:54:19	MarkDuplicates	Read   467,000,000 records.  Elapsed time: 00:14:13s.  Time for last 1,000,000:    1s.  Last read position: chr16:89,560,696
INFO	2026-06-08 08:54:19	MarkDuplicates	Tracking 441917 as yet unmatched pairs. 2658 records in RAM.
INFO	2026-06-08 08:54:22	MarkDuplicates	Read   468,000,000 records.  Elapsed time: 00:14:15s.  Time for last 1,000,000:    2s.  Last read position: chr17:655,899
INFO	2026-06-08 08:54:22	MarkDuplicates	Tracking 439541 as yet unmatched pairs. 127556 records in RAM.
INFO	2026-06-08 08:54:23	MarkDuplicates	Read   469,000,000 records.  Elapsed time: 00:14:17s.  Time for last 1,000,000:    1s.  Last read position: chr17:1,553,087
INFO	2026-06-08 08:54:23	MarkDuplicates	Tracking 436735 as yet unmatched pairs. 124749 records in RAM.
INFO	2026-06-08 08:54:25	MarkDuplicates	Read   470,000,000 records.  Elapsed time: 00:14:19s.  Time for last 1,000,000:    1s.  Last read position: chr17:2,040,515
INFO	2026-06-08 08:54:25	MarkDuplicates	Tracking 434323 as yet unmatched pairs. 122337 records in RAM.
INFO	2026-06-08 08:54:28	MarkDuplicates	Read   471,000,000 records.  Elapsed time: 00:14:21s.  Time for last 1,000,000:    2s.  Last read position: chr17:4,006,920
INFO	2026-06-08 08:54:28	MarkDuplicates	Tracking 431808 as yet unmatched pairs. 119821 records in RAM.
INFO	2026-06-08 08:54:29	MarkDuplicates	Read   472,000,000 records.  Elapsed time: 00:14:23s.  Time for last 1,000,000:    1s.  Last read position: chr17:4,891,078
INFO	2026-06-08 08:54:29	MarkDuplicates	Tracking 430427 as yet unmatched pairs. 118440 records in RAM.
INFO	2026-06-08 08:54:31	MarkDuplicates	Read   473,000,000 records.  Elapsed time: 00:14:25s.  Time for last 1,000,000:    1s.  Last read position: chr17:5,541,938
INFO	2026-06-08 08:54:31	MarkDuplicates	Tracking 427087 as yet unmatched pairs. 115100 records in RAM.
INFO	2026-06-08 08:54:33	MarkDuplicates	Read   474,000,000 records.  Elapsed time: 00:14:27s.  Time for last 1,000,000:    1s.  Last read position: chr17:7,311,348
INFO	2026-06-08 08:54:33	MarkDuplicates	Tracking 425285 as yet unmatched pairs. 113298 records in RAM.
INFO	2026-06-08 08:54:35	MarkDuplicates	Read   475,000,000 records.  Elapsed time: 00:14:28s.  Time for last 1,000,000:    1s.  Last read position: chr17:7,509,012
INFO	2026-06-08 08:54:35	MarkDuplicates	Tracking 421861 as yet unmatched pairs. 109874 records in RAM.
INFO	2026-06-08 08:54:37	MarkDuplicates	Read   476,000,000 records.  Elapsed time: 00:14:31s.  Time for last 1,000,000:    2s.  Last read position: chr17:7,592,569
INFO	2026-06-08 08:54:37	MarkDuplicates	Tracking 419975 as yet unmatched pairs. 107988 records in RAM.
INFO	2026-06-08 08:54:39	MarkDuplicates	Read   477,000,000 records.  Elapsed time: 00:14:33s.  Time for last 1,000,000:    2s.  Last read position: chr17:8,143,751
INFO	2026-06-08 08:54:39	MarkDuplicates	Tracking 418461 as yet unmatched pairs. 106474 records in RAM.
INFO	2026-06-08 08:54:41	MarkDuplicates	Read   478,000,000 records.  Elapsed time: 00:14:35s.  Time for last 1,000,000:    1s.  Last read position: chr17:13,000,133
INFO	2026-06-08 08:54:41	MarkDuplicates	Tracking 415457 as yet unmatched pairs. 103470 records in RAM.
INFO	2026-06-08 08:54:42	MarkDuplicates	Read   479,000,000 records.  Elapsed time: 00:14:36s.  Time for last 1,000,000:    1s.  Last read position: chr17:17,158,699
INFO	2026-06-08 08:54:42	MarkDuplicates	Tracking 414174 as yet unmatched pairs. 102186 records in RAM.
INFO	2026-06-08 08:54:44	MarkDuplicates	Read   480,000,000 records.  Elapsed time: 00:14:38s.  Time for last 1,000,000:    1s.  Last read position: chr17:18,247,294
INFO	2026-06-08 08:54:44	MarkDuplicates	Tracking 411454 as yet unmatched pairs. 99466 records in RAM.
INFO	2026-06-08 08:54:45	MarkDuplicates	Read   481,000,000 records.  Elapsed time: 00:14:39s.  Time for last 1,000,000:    1s.  Last read position: chr17:21,198,318
INFO	2026-06-08 08:54:45	MarkDuplicates	Tracking 408772 as yet unmatched pairs. 96784 records in RAM.
INFO	2026-06-08 08:54:47	MarkDuplicates	Read   482,000,000 records.  Elapsed time: 00:14:41s.  Time for last 1,000,000:    1s.  Last read position: chr17:28,643,618
INFO	2026-06-08 08:54:47	MarkDuplicates	Tracking 406823 as yet unmatched pairs. 94834 records in RAM.
INFO	2026-06-08 08:54:49	MarkDuplicates	Read   483,000,000 records.  Elapsed time: 00:14:43s.  Time for last 1,000,000:    2s.  Last read position: chr17:29,542,913
INFO	2026-06-08 08:54:49	MarkDuplicates	Tracking 404328 as yet unmatched pairs. 92339 records in RAM.
INFO	2026-06-08 08:54:52	MarkDuplicates	Read   484,000,000 records.  Elapsed time: 00:14:45s.  Time for last 1,000,000:    2s.  Last read position: chr17:31,973,198
INFO	2026-06-08 08:54:52	MarkDuplicates	Tracking 401966 as yet unmatched pairs. 89977 records in RAM.
INFO	2026-06-08 08:54:53	MarkDuplicates	Read   485,000,000 records.  Elapsed time: 00:14:47s.  Time for last 1,000,000:    1s.  Last read position: chr17:35,878,560
INFO	2026-06-08 08:54:53	MarkDuplicates	Tracking 400568 as yet unmatched pairs. 88579 records in RAM.
INFO	2026-06-08 08:54:55	MarkDuplicates	Read   486,000,000 records.  Elapsed time: 00:14:49s.  Time for last 1,000,000:    1s.  Last read position: chr17:37,934,654
INFO	2026-06-08 08:54:55	MarkDuplicates	Tracking 397622 as yet unmatched pairs. 85632 records in RAM.
INFO	2026-06-08 08:54:56	MarkDuplicates	Read   487,000,000 records.  Elapsed time: 00:14:50s.  Time for last 1,000,000:    1s.  Last read position: chr17:38,752,794
INFO	2026-06-08 08:54:56	MarkDuplicates	Tracking 396149 as yet unmatched pairs. 84159 records in RAM.
INFO	2026-06-08 08:54:58	MarkDuplicates	Read   488,000,000 records.  Elapsed time: 00:14:52s.  Time for last 1,000,000:    1s.  Last read position: chr17:39,712,362
INFO	2026-06-08 08:54:58	MarkDuplicates	Tracking 394741 as yet unmatched pairs. 82751 records in RAM.
INFO	2026-06-08 08:54:59	MarkDuplicates	Read   489,000,000 records.  Elapsed time: 00:14:53s.  Time for last 1,000,000:    1s.  Last read position: chr17:40,392,590
INFO	2026-06-08 08:54:59	MarkDuplicates	Tracking 391341 as yet unmatched pairs. 79351 records in RAM.
INFO	2026-06-08 08:55:01	MarkDuplicates	Read   490,000,000 records.  Elapsed time: 00:14:55s.  Time for last 1,000,000:    1s.  Last read position: chr17:41,871,700
INFO	2026-06-08 08:55:01	MarkDuplicates	Tracking 389035 as yet unmatched pairs. 77029 records in RAM.
INFO	2026-06-08 08:55:02	MarkDuplicates	Read   491,000,000 records.  Elapsed time: 00:14:56s.  Time for last 1,000,000:    1s.  Last read position: chr17:42,562,636
INFO	2026-06-08 08:55:02	MarkDuplicates	Tracking 387207 as yet unmatched pairs. 75201 records in RAM.
INFO	2026-06-08 08:55:04	MarkDuplicates	Read   492,000,000 records.  Elapsed time: 00:14:58s.  Time for last 1,000,000:    1s.  Last read position: chr17:43,533,222
INFO	2026-06-08 08:55:04	MarkDuplicates	Tracking 384388 as yet unmatched pairs. 72382 records in RAM.
INFO	2026-06-08 08:55:06	MarkDuplicates	Read   493,000,000 records.  Elapsed time: 00:15:00s.  Time for last 1,000,000:    2s.  Last read position: chr17:44,730,063
INFO	2026-06-08 08:55:06	MarkDuplicates	Tracking 381431 as yet unmatched pairs. 69425 records in RAM.
INFO	2026-06-08 08:55:08	MarkDuplicates	Read   494,000,000 records.  Elapsed time: 00:15:02s.  Time for last 1,000,000:    2s.  Last read position: chr17:46,171,967
INFO	2026-06-08 08:55:08	MarkDuplicates	Tracking 379677 as yet unmatched pairs. 67671 records in RAM.
INFO	2026-06-08 08:55:10	MarkDuplicates	Read   495,000,000 records.  Elapsed time: 00:15:04s.  Time for last 1,000,000:    1s.  Last read position: chr17:47,815,315
INFO	2026-06-08 08:55:10	MarkDuplicates	Tracking 377371 as yet unmatched pairs. 65365 records in RAM.
INFO	2026-06-08 08:55:11	MarkDuplicates	Read   496,000,000 records.  Elapsed time: 00:15:05s.  Time for last 1,000,000:    1s.  Last read position: chr17:49,815,888
INFO	2026-06-08 08:55:11	MarkDuplicates	Tracking 374871 as yet unmatched pairs. 62865 records in RAM.
INFO	2026-06-08 08:55:13	MarkDuplicates	Read   497,000,000 records.  Elapsed time: 00:15:07s.  Time for last 1,000,000:    1s.  Last read position: chr17:50,185,857
INFO	2026-06-08 08:55:13	MarkDuplicates	Tracking 376432 as yet unmatched pairs. 64426 records in RAM.
INFO	2026-06-08 08:55:14	MarkDuplicates	Read   498,000,000 records.  Elapsed time: 00:15:08s.  Time for last 1,000,000:    1s.  Last read position: chr17:50,187,886
INFO	2026-06-08 08:55:14	MarkDuplicates	Tracking 389639 as yet unmatched pairs. 77632 records in RAM.
INFO	2026-06-08 08:55:16	MarkDuplicates	Read   499,000,000 records.  Elapsed time: 00:15:10s.  Time for last 1,000,000:    1s.  Last read position: chr17:50,189,218
INFO	2026-06-08 08:55:16	MarkDuplicates	Tracking 373684 as yet unmatched pairs. 61677 records in RAM.
INFO	2026-06-08 08:55:18	MarkDuplicates	Read   500,000,000 records.  Elapsed time: 00:15:12s.  Time for last 1,000,000:    1s.  Last read position: chr17:50,190,052
INFO	2026-06-08 08:55:18	MarkDuplicates	Tracking 386470 as yet unmatched pairs. 74462 records in RAM.
INFO	2026-06-08 08:55:20	MarkDuplicates	Read   501,000,000 records.  Elapsed time: 00:15:13s.  Time for last 1,000,000:    1s.  Last read position: chr17:50,192,414
INFO	2026-06-08 08:55:20	MarkDuplicates	Tracking 372589 as yet unmatched pairs. 60581 records in RAM.
INFO	2026-06-08 08:55:22	MarkDuplicates	Read   502,000,000 records.  Elapsed time: 00:15:15s.  Time for last 1,000,000:    2s.  Last read position: chr17:50,194,154
INFO	2026-06-08 08:55:22	MarkDuplicates	Tracking 378710 as yet unmatched pairs. 66700 records in RAM.
INFO	2026-06-08 08:55:23	MarkDuplicates	Read   503,000,000 records.  Elapsed time: 00:15:17s.  Time for last 1,000,000:    1s.  Last read position: chr17:50,195,563
INFO	2026-06-08 08:55:23	MarkDuplicates	Tracking 368494 as yet unmatched pairs. 56484 records in RAM.
INFO	2026-06-08 08:55:25	MarkDuplicates	Read   504,000,000 records.  Elapsed time: 00:15:19s.  Time for last 1,000,000:    1s.  Last read position: chr17:50,196,517
INFO	2026-06-08 08:55:25	MarkDuplicates	Tracking 364182 as yet unmatched pairs. 52171 records in RAM.
INFO	2026-06-08 08:55:27	MarkDuplicates	Read   505,000,000 records.  Elapsed time: 00:15:20s.  Time for last 1,000,000:    1s.  Last read position: chr17:50,199,241
INFO	2026-06-08 08:55:27	MarkDuplicates	Tracking 362784 as yet unmatched pairs. 50773 records in RAM.
INFO	2026-06-08 08:55:30	MarkDuplicates	Read   506,000,000 records.  Elapsed time: 00:15:23s.  Time for last 1,000,000:    2s.  Last read position: chr17:50,549,114
INFO	2026-06-08 08:55:30	MarkDuplicates	Tracking 350223 as yet unmatched pairs. 38212 records in RAM.
INFO	2026-06-08 08:55:32	MarkDuplicates	Read   507,000,000 records.  Elapsed time: 00:15:26s.  Time for last 1,000,000:    2s.  Last read position: chr17:57,106,206
INFO	2026-06-08 08:55:32	MarkDuplicates	Tracking 347825 as yet unmatched pairs. 35814 records in RAM.
INFO	2026-06-08 08:55:34	MarkDuplicates	Read   508,000,000 records.  Elapsed time: 00:15:28s.  Time for last 1,000,000:    1s.  Last read position: chr17:59,685,181
INFO	2026-06-08 08:55:34	MarkDuplicates	Tracking 345803 as yet unmatched pairs. 33791 records in RAM.
INFO	2026-06-08 08:55:35	MarkDuplicates	Read   509,000,000 records.  Elapsed time: 00:15:29s.  Time for last 1,000,000:    1s.  Last read position: chr17:63,693,653
INFO	2026-06-08 08:55:35	MarkDuplicates	Tracking 342979 as yet unmatched pairs. 30965 records in RAM.
INFO	2026-06-08 08:55:37	MarkDuplicates	Read   510,000,000 records.  Elapsed time: 00:15:31s.  Time for last 1,000,000:    1s.  Last read position: chr17:66,537,017
INFO	2026-06-08 08:55:37	MarkDuplicates	Tracking 340503 as yet unmatched pairs. 28488 records in RAM.
INFO	2026-06-08 08:57:54	MarkDuplicates	Read   511,000,000 records.  Elapsed time: 00:17:47s.  Time for last 1,000,000:  136s.  Last read position: chr17:73,235,497
INFO	2026-06-08 08:57:54	MarkDuplicates	Tracking 338194 as yet unmatched pairs. 26178 records in RAM.
INFO	2026-06-08 08:57:56	MarkDuplicates	Read   512,000,000 records.  Elapsed time: 00:17:50s.  Time for last 1,000,000:    2s.  Last read position: chr17:75,501,614
INFO	2026-06-08 08:57:56	MarkDuplicates	Tracking 335819 as yet unmatched pairs. 23803 records in RAM.
INFO	2026-06-08 08:57:58	MarkDuplicates	Read   513,000,000 records.  Elapsed time: 00:17:51s.  Time for last 1,000,000:    1s.  Last read position: chr17:75,847,500
INFO	2026-06-08 08:57:58	MarkDuplicates	Tracking 333713 as yet unmatched pairs. 21697 records in RAM.
INFO	2026-06-08 08:57:59	MarkDuplicates	Read   514,000,000 records.  Elapsed time: 00:17:53s.  Time for last 1,000,000:    1s.  Last read position: chr17:76,475,137
INFO	2026-06-08 08:57:59	MarkDuplicates	Tracking 330886 as yet unmatched pairs. 18870 records in RAM.
INFO	2026-06-08 08:58:01	MarkDuplicates	Read   515,000,000 records.  Elapsed time: 00:17:55s.  Time for last 1,000,000:    1s.  Last read position: chr17:78,171,894
INFO	2026-06-08 08:58:01	MarkDuplicates	Tracking 329731 as yet unmatched pairs. 17715 records in RAM.
INFO	2026-06-08 08:58:03	MarkDuplicates	Read   516,000,000 records.  Elapsed time: 00:17:57s.  Time for last 1,000,000:    1s.  Last read position: chr17:80,010,465
INFO	2026-06-08 08:58:03	MarkDuplicates	Tracking 325883 as yet unmatched pairs. 13860 records in RAM.
INFO	2026-06-08 08:58:05	MarkDuplicates	Read   517,000,000 records.  Elapsed time: 00:17:59s.  Time for last 1,000,000:    1s.  Last read position: chr17:80,346,715
INFO	2026-06-08 08:58:05	MarkDuplicates	Tracking 324187 as yet unmatched pairs. 12163 records in RAM.
INFO	2026-06-08 08:58:07	MarkDuplicates	Read   518,000,000 records.  Elapsed time: 00:18:00s.  Time for last 1,000,000:    1s.  Last read position: chr17:81,458,902
INFO	2026-06-08 08:58:07	MarkDuplicates	Tracking 320609 as yet unmatched pairs. 8585 records in RAM.
INFO	2026-06-08 08:58:08	MarkDuplicates	Read   519,000,000 records.  Elapsed time: 00:18:02s.  Time for last 1,000,000:    1s.  Last read position: chr17:81,845,216
INFO	2026-06-08 08:58:08	MarkDuplicates	Tracking 318582 as yet unmatched pairs. 6558 records in RAM.
INFO	2026-06-08 08:58:10	MarkDuplicates	Read   520,000,000 records.  Elapsed time: 00:18:04s.  Time for last 1,000,000:    1s.  Last read position: chr17:82,083,778
INFO	2026-06-08 08:58:10	MarkDuplicates	Tracking 315825 as yet unmatched pairs. 3801 records in RAM.
INFO	2026-06-08 08:58:12	MarkDuplicates	Read   521,000,000 records.  Elapsed time: 00:18:06s.  Time for last 1,000,000:    1s.  Last read position: chr17:82,568,154
INFO	2026-06-08 08:58:12	MarkDuplicates	Tracking 312995 as yet unmatched pairs. 971 records in RAM.
INFO	2026-06-08 08:58:13	MarkDuplicates	Read   522,000,000 records.  Elapsed time: 00:18:07s.  Time for last 1,000,000:    1s.  Last read position: chr18:8,784,333
INFO	2026-06-08 08:58:13	MarkDuplicates	Tracking 311058 as yet unmatched pairs. 8321 records in RAM.
INFO	2026-06-08 08:58:15	MarkDuplicates	Read   523,000,000 records.  Elapsed time: 00:18:09s.  Time for last 1,000,000:    1s.  Last read position: chr18:23,532,169
INFO	2026-06-08 08:58:15	MarkDuplicates	Tracking 308389 as yet unmatched pairs. 5640 records in RAM.
INFO	2026-06-08 08:58:17	MarkDuplicates	Read   524,000,000 records.  Elapsed time: 00:18:11s.  Time for last 1,000,000:    1s.  Last read position: chr18:47,896,651
INFO	2026-06-08 08:58:17	MarkDuplicates	Tracking 306663 as yet unmatched pairs. 3912 records in RAM.
INFO	2026-06-08 08:58:18	MarkDuplicates	Read   525,000,000 records.  Elapsed time: 00:18:12s.  Time for last 1,000,000:    1s.  Last read position: chr18:62,574,706
INFO	2026-06-08 08:58:18	MarkDuplicates	Tracking 304476 as yet unmatched pairs. 1725 records in RAM.
INFO	2026-06-08 08:58:21	MarkDuplicates	Read   526,000,000 records.  Elapsed time: 00:18:15s.  Time for last 1,000,000:    2s.  Last read position: chr19:648,089
INFO	2026-06-08 08:58:21	MarkDuplicates	Tracking 301977 as yet unmatched pairs. 124390 records in RAM.
INFO	2026-06-08 08:58:23	MarkDuplicates	Read   527,000,000 records.  Elapsed time: 00:18:17s.  Time for last 1,000,000:    2s.  Last read position: chr19:1,082,927
INFO	2026-06-08 08:58:23	MarkDuplicates	Tracking 299467 as yet unmatched pairs. 121880 records in RAM.
INFO	2026-06-08 08:58:25	MarkDuplicates	Read   528,000,000 records.  Elapsed time: 00:18:19s.  Time for last 1,000,000:    1s.  Last read position: chr19:1,421,150
INFO	2026-06-08 08:58:25	MarkDuplicates	Tracking 296882 as yet unmatched pairs. 119295 records in RAM.
INFO	2026-06-08 08:58:28	MarkDuplicates	Read   529,000,000 records.  Elapsed time: 00:18:21s.  Time for last 1,000,000:    2s.  Last read position: chr19:1,986,495
INFO	2026-06-08 08:58:28	MarkDuplicates	Tracking 294081 as yet unmatched pairs. 116494 records in RAM.
INFO	2026-06-08 08:58:29	MarkDuplicates	Read   530,000,000 records.  Elapsed time: 00:18:23s.  Time for last 1,000,000:    1s.  Last read position: chr19:2,431,839
INFO	2026-06-08 08:58:29	MarkDuplicates	Tracking 291130 as yet unmatched pairs. 113543 records in RAM.
INFO	2026-06-08 08:58:31	MarkDuplicates	Read   531,000,000 records.  Elapsed time: 00:18:25s.  Time for last 1,000,000:    2s.  Last read position: chr19:3,964,940
INFO	2026-06-08 08:58:31	MarkDuplicates	Tracking 288267 as yet unmatched pairs. 110680 records in RAM.
INFO	2026-06-08 08:58:34	MarkDuplicates	Read   532,000,000 records.  Elapsed time: 00:18:28s.  Time for last 1,000,000:    2s.  Last read position: chr19:4,714,241
INFO	2026-06-08 08:58:34	MarkDuplicates	Tracking 285829 as yet unmatched pairs. 108241 records in RAM.
INFO	2026-06-08 08:58:35	MarkDuplicates	Read   533,000,000 records.  Elapsed time: 00:18:29s.  Time for last 1,000,000:    1s.  Last read position: chr19:5,896,492
INFO	2026-06-08 08:58:35	MarkDuplicates	Tracking 283428 as yet unmatched pairs. 105840 records in RAM.
INFO	2026-06-08 08:58:37	MarkDuplicates	Read   534,000,000 records.  Elapsed time: 00:18:31s.  Time for last 1,000,000:    1s.  Last read position: chr19:7,467,316
INFO	2026-06-08 08:58:37	MarkDuplicates	Tracking 280707 as yet unmatched pairs. 103119 records in RAM.
INFO	2026-06-08 08:58:40	MarkDuplicates	Read   535,000,000 records.  Elapsed time: 00:18:34s.  Time for last 1,000,000:    2s.  Last read position: chr19:8,365,991
INFO	2026-06-08 08:58:40	MarkDuplicates	Tracking 279201 as yet unmatched pairs. 101612 records in RAM.
INFO	2026-06-08 08:58:42	MarkDuplicates	Read   536,000,000 records.  Elapsed time: 00:18:35s.  Time for last 1,000,000:    1s.  Last read position: chr19:9,614,058
INFO	2026-06-08 08:58:42	MarkDuplicates	Tracking 275693 as yet unmatched pairs. 98104 records in RAM.
INFO	2026-06-08 08:58:43	MarkDuplicates	Read   537,000,000 records.  Elapsed time: 00:18:37s.  Time for last 1,000,000:    1s.  Last read position: chr19:10,365,785
INFO	2026-06-08 08:58:43	MarkDuplicates	Tracking 273555 as yet unmatched pairs. 95966 records in RAM.
INFO	2026-06-08 08:58:45	MarkDuplicates	Read   538,000,000 records.  Elapsed time: 00:18:39s.  Time for last 1,000,000:    1s.  Last read position: chr19:11,025,493
INFO	2026-06-08 08:58:45	MarkDuplicates	Tracking 270756 as yet unmatched pairs. 93166 records in RAM.
INFO	2026-06-08 08:58:47	MarkDuplicates	Read   539,000,000 records.  Elapsed time: 00:18:41s.  Time for last 1,000,000:    1s.  Last read position: chr19:12,643,630
INFO	2026-06-08 08:58:47	MarkDuplicates	Tracking 268392 as yet unmatched pairs. 90802 records in RAM.
INFO	2026-06-08 08:58:48	MarkDuplicates	Read   540,000,000 records.  Elapsed time: 00:18:42s.  Time for last 1,000,000:    1s.  Last read position: chr19:12,948,684
INFO	2026-06-08 08:58:48	MarkDuplicates	Tracking 265978 as yet unmatched pairs. 88388 records in RAM.
INFO	2026-06-08 08:58:50	MarkDuplicates	Read   541,000,000 records.  Elapsed time: 00:18:44s.  Time for last 1,000,000:    1s.  Last read position: chr19:14,160,632
INFO	2026-06-08 08:58:50	MarkDuplicates	Tracking 263278 as yet unmatched pairs. 85688 records in RAM.
INFO	2026-06-08 08:58:52	MarkDuplicates	Read   542,000,000 records.  Elapsed time: 00:18:46s.  Time for last 1,000,000:    2s.  Last read position: chr19:15,160,844
INFO	2026-06-08 08:58:52	MarkDuplicates	Tracking 261699 as yet unmatched pairs. 84109 records in RAM.
INFO	2026-06-08 08:58:55	MarkDuplicates	Read   543,000,000 records.  Elapsed time: 00:18:48s.  Time for last 1,000,000:    2s.  Last read position: chr19:15,256,190
INFO	2026-06-08 08:58:55	MarkDuplicates	Tracking 259278 as yet unmatched pairs. 81688 records in RAM.
INFO	2026-06-08 08:58:57	MarkDuplicates	Read   544,000,000 records.  Elapsed time: 00:18:51s.  Time for last 1,000,000:    2s.  Last read position: chr19:16,530,585
INFO	2026-06-08 08:58:57	MarkDuplicates	Tracking 256079 as yet unmatched pairs. 78489 records in RAM.
INFO	2026-06-08 08:59:00	MarkDuplicates	Read   545,000,000 records.  Elapsed time: 00:18:54s.  Time for last 1,000,000:    2s.  Last read position: chr19:17,339,476
INFO	2026-06-08 08:59:00	MarkDuplicates	Tracking 253149 as yet unmatched pairs. 75558 records in RAM.
INFO	2026-06-08 08:59:02	MarkDuplicates	Read   546,000,000 records.  Elapsed time: 00:18:55s.  Time for last 1,000,000:    1s.  Last read position: chr19:18,010,350
INFO	2026-06-08 08:59:02	MarkDuplicates	Tracking 250754 as yet unmatched pairs. 73160 records in RAM.
INFO	2026-06-08 08:59:03	MarkDuplicates	Read   547,000,000 records.  Elapsed time: 00:18:57s.  Time for last 1,000,000:    1s.  Last read position: chr19:18,765,481
INFO	2026-06-08 08:59:03	MarkDuplicates	Tracking 248205 as yet unmatched pairs. 70611 records in RAM.
INFO	2026-06-08 08:59:05	MarkDuplicates	Read   548,000,000 records.  Elapsed time: 00:18:59s.  Time for last 1,000,000:    1s.  Last read position: chr19:21,082,357
INFO	2026-06-08 08:59:05	MarkDuplicates	Tracking 245474 as yet unmatched pairs. 67880 records in RAM.
INFO	2026-06-08 08:59:07	MarkDuplicates	Read   549,000,000 records.  Elapsed time: 00:19:01s.  Time for last 1,000,000:    1s.  Last read position: chr19:35,000,355
INFO	2026-06-08 08:59:07	MarkDuplicates	Tracking 244012 as yet unmatched pairs. 66401 records in RAM.
INFO	2026-06-08 08:59:09	MarkDuplicates	Read   550,000,000 records.  Elapsed time: 00:19:02s.  Time for last 1,000,000:    1s.  Last read position: chr19:35,642,926
INFO	2026-06-08 08:59:09	MarkDuplicates	Tracking 240272 as yet unmatched pairs. 62661 records in RAM.
INFO	2026-06-08 08:59:10	MarkDuplicates	Read   551,000,000 records.  Elapsed time: 00:19:04s.  Time for last 1,000,000:    1s.  Last read position: chr19:36,140,123
INFO	2026-06-08 08:59:10	MarkDuplicates	Tracking 237836 as yet unmatched pairs. 60225 records in RAM.
INFO	2026-06-08 08:59:12	MarkDuplicates	Read   552,000,000 records.  Elapsed time: 00:19:06s.  Time for last 1,000,000:    1s.  Last read position: chr19:38,624,126
INFO	2026-06-08 08:59:12	MarkDuplicates	Tracking 236429 as yet unmatched pairs. 58817 records in RAM.
INFO	2026-06-08 08:59:14	MarkDuplicates	Read   553,000,000 records.  Elapsed time: 00:19:08s.  Time for last 1,000,000:    1s.  Last read position: chr19:39,377,801
INFO	2026-06-08 08:59:14	MarkDuplicates	Tracking 233682 as yet unmatched pairs. 56070 records in RAM.
INFO	2026-06-08 08:59:16	MarkDuplicates	Read   554,000,000 records.  Elapsed time: 00:19:10s.  Time for last 1,000,000:    2s.  Last read position: chr19:40,117,521
INFO	2026-06-08 08:59:16	MarkDuplicates	Tracking 230798 as yet unmatched pairs. 53186 records in RAM.
INFO	2026-06-08 08:59:18	MarkDuplicates	Read   555,000,000 records.  Elapsed time: 00:19:12s.  Time for last 1,000,000:    2s.  Last read position: chr19:40,757,370
INFO	2026-06-08 08:59:18	MarkDuplicates	Tracking 228467 as yet unmatched pairs. 50855 records in RAM.
INFO	2026-06-08 08:59:21	MarkDuplicates	Read   556,000,000 records.  Elapsed time: 00:19:14s.  Time for last 1,000,000:    2s.  Last read position: chr19:41,880,705
INFO	2026-06-08 08:59:21	MarkDuplicates	Tracking 225919 as yet unmatched pairs. 48307 records in RAM.
INFO	2026-06-08 08:59:23	MarkDuplicates	Read   557,000,000 records.  Elapsed time: 00:19:17s.  Time for last 1,000,000:    2s.  Last read position: chr19:42,274,470
INFO	2026-06-08 08:59:23	MarkDuplicates	Tracking 224300 as yet unmatched pairs. 46688 records in RAM.
INFO	2026-06-08 08:59:25	MarkDuplicates	Read   558,000,000 records.  Elapsed time: 00:19:18s.  Time for last 1,000,000:    1s.  Last read position: chr19:43,598,991
INFO	2026-06-08 08:59:25	MarkDuplicates	Tracking 220833 as yet unmatched pairs. 43206 records in RAM.
INFO	2026-06-08 08:59:26	MarkDuplicates	Read   559,000,000 records.  Elapsed time: 00:19:20s.  Time for last 1,000,000:    1s.  Last read position: chr19:44,914,717
INFO	2026-06-08 08:59:26	MarkDuplicates	Tracking 217848 as yet unmatched pairs. 40221 records in RAM.
INFO	2026-06-08 08:59:28	MarkDuplicates	Read   560,000,000 records.  Elapsed time: 00:19:22s.  Time for last 1,000,000:    1s.  Last read position: chr19:45,470,654
INFO	2026-06-08 08:59:28	MarkDuplicates	Tracking 214932 as yet unmatched pairs. 37305 records in RAM.
INFO	2026-06-08 08:59:30	MarkDuplicates	Read   561,000,000 records.  Elapsed time: 00:19:23s.  Time for last 1,000,000:    1s.  Last read position: chr19:46,331,190
INFO	2026-06-08 08:59:30	MarkDuplicates	Tracking 212524 as yet unmatched pairs. 34897 records in RAM.
INFO	2026-06-08 08:59:31	MarkDuplicates	Read   562,000,000 records.  Elapsed time: 00:19:25s.  Time for last 1,000,000:    1s.  Last read position: chr19:47,379,828
INFO	2026-06-08 08:59:31	MarkDuplicates	Tracking 209991 as yet unmatched pairs. 32364 records in RAM.
INFO	2026-06-08 08:59:33	MarkDuplicates	Read   563,000,000 records.  Elapsed time: 00:19:27s.  Time for last 1,000,000:    1s.  Last read position: chr19:48,470,373
INFO	2026-06-08 08:59:33	MarkDuplicates	Tracking 207578 as yet unmatched pairs. 29951 records in RAM.
INFO	2026-06-08 08:59:35	MarkDuplicates	Read   564,000,000 records.  Elapsed time: 00:19:29s.  Time for last 1,000,000:    1s.  Last read position: chr19:48,969,205
INFO	2026-06-08 08:59:35	MarkDuplicates	Tracking 205141 as yet unmatched pairs. 27514 records in RAM.
INFO	2026-06-08 08:59:37	MarkDuplicates	Read   565,000,000 records.  Elapsed time: 00:19:30s.  Time for last 1,000,000:    1s.  Last read position: chr19:49,491,044
INFO	2026-06-08 08:59:37	MarkDuplicates	Tracking 203581 as yet unmatched pairs. 25953 records in RAM.
INFO	2026-06-08 08:59:38	MarkDuplicates	Read   566,000,000 records.  Elapsed time: 00:19:32s.  Time for last 1,000,000:    1s.  Last read position: chr19:49,652,212
INFO	2026-06-08 08:59:38	MarkDuplicates	Tracking 200247 as yet unmatched pairs. 22618 records in RAM.
INFO	2026-06-08 08:59:41	MarkDuplicates	Read   567,000,000 records.  Elapsed time: 00:19:35s.  Time for last 1,000,000:    2s.  Last read position: chr19:49,888,248
INFO	2026-06-08 08:59:41	MarkDuplicates	Tracking 198119 as yet unmatched pairs. 20490 records in RAM.
INFO	2026-06-08 08:59:43	MarkDuplicates	Read   568,000,000 records.  Elapsed time: 00:19:37s.  Time for last 1,000,000:    2s.  Last read position: chr19:51,104,235
INFO	2026-06-08 08:59:43	MarkDuplicates	Tracking 194670 as yet unmatched pairs. 17041 records in RAM.
INFO	2026-06-08 08:59:45	MarkDuplicates	Read   569,000,000 records.  Elapsed time: 00:19:39s.  Time for last 1,000,000:    1s.  Last read position: chr19:52,614,382
INFO	2026-06-08 08:59:45	MarkDuplicates	Tracking 192561 as yet unmatched pairs. 14932 records in RAM.
INFO	2026-06-08 08:59:46	MarkDuplicates	Read   570,000,000 records.  Elapsed time: 00:19:40s.  Time for last 1,000,000:    1s.  Last read position: chr19:54,201,159
INFO	2026-06-08 08:59:46	MarkDuplicates	Tracking 191108 as yet unmatched pairs. 13479 records in RAM.
INFO	2026-06-08 08:59:48	MarkDuplicates	Read   571,000,000 records.  Elapsed time: 00:19:42s.  Time for last 1,000,000:    1s.  Last read position: chr19:54,663,050
INFO	2026-06-08 08:59:48	MarkDuplicates	Tracking 188682 as yet unmatched pairs. 11053 records in RAM.
INFO	2026-06-08 08:59:50	MarkDuplicates	Read   572,000,000 records.  Elapsed time: 00:19:44s.  Time for last 1,000,000:    1s.  Last read position: chr19:55,386,621
INFO	2026-06-08 08:59:50	MarkDuplicates	Tracking 193344 as yet unmatched pairs. 15715 records in RAM.
INFO	2026-06-08 08:59:51	MarkDuplicates	Read   573,000,000 records.  Elapsed time: 00:19:45s.  Time for last 1,000,000:    1s.  Last read position: chr19:55,669,647
INFO	2026-06-08 08:59:51	MarkDuplicates	Tracking 183317 as yet unmatched pairs. 5688 records in RAM.
INFO	2026-06-08 08:59:53	MarkDuplicates	Read   574,000,000 records.  Elapsed time: 00:19:47s.  Time for last 1,000,000:    1s.  Last read position: chr19:58,000,729
INFO	2026-06-08 08:59:53	MarkDuplicates	Tracking 180323 as yet unmatched pairs. 2694 records in RAM.
INFO	2026-06-08 08:59:55	MarkDuplicates	Read   575,000,000 records.  Elapsed time: 00:19:49s.  Time for last 1,000,000:    2s.  Last read position: chr20:297,573
INFO	2026-06-08 08:59:55	MarkDuplicates	Tracking 177626 as yet unmatched pairs. 47951 records in RAM.
INFO	2026-06-08 08:59:57	MarkDuplicates	Read   576,000,000 records.  Elapsed time: 00:19:51s.  Time for last 1,000,000:    1s.  Last read position: chr20:1,921,532
INFO	2026-06-08 08:59:57	MarkDuplicates	Tracking 176881 as yet unmatched pairs. 47206 records in RAM.
INFO	2026-06-08 09:00:00	MarkDuplicates	Read   577,000,000 records.  Elapsed time: 00:19:54s.  Time for last 1,000,000:    2s.  Last read position: chr20:3,583,897
INFO	2026-06-08 09:00:00	MarkDuplicates	Tracking 172887 as yet unmatched pairs. 43212 records in RAM.
INFO	2026-06-08 09:00:02	MarkDuplicates	Read   578,000,000 records.  Elapsed time: 00:19:56s.  Time for last 1,000,000:    1s.  Last read position: chr20:4,792,559
INFO	2026-06-08 09:00:02	MarkDuplicates	Tracking 170601 as yet unmatched pairs. 40926 records in RAM.
INFO	2026-06-08 09:00:04	MarkDuplicates	Read   579,000,000 records.  Elapsed time: 00:19:57s.  Time for last 1,000,000:    1s.  Last read position: chr20:17,621,743
INFO	2026-06-08 09:00:04	MarkDuplicates	Tracking 169137 as yet unmatched pairs. 39462 records in RAM.
INFO	2026-06-08 09:00:05	MarkDuplicates	Read   580,000,000 records.  Elapsed time: 00:19:59s.  Time for last 1,000,000:    1s.  Last read position: chr20:23,084,477
INFO	2026-06-08 09:00:05	MarkDuplicates	Tracking 165833 as yet unmatched pairs. 36158 records in RAM.
INFO	2026-06-08 09:00:07	MarkDuplicates	Read   581,000,000 records.  Elapsed time: 00:20:01s.  Time for last 1,000,000:    1s.  Last read position: chr20:31,946,534
INFO	2026-06-08 09:00:07	MarkDuplicates	Tracking 163494 as yet unmatched pairs. 33818 records in RAM.
INFO	2026-06-08 09:00:09	MarkDuplicates	Read   582,000,000 records.  Elapsed time: 00:20:03s.  Time for last 1,000,000:    2s.  Last read position: chr20:34,431,153
INFO	2026-06-08 09:00:09	MarkDuplicates	Tracking 161275 as yet unmatched pairs. 31599 records in RAM.
INFO	2026-06-08 09:00:12	MarkDuplicates	Read   583,000,000 records.  Elapsed time: 00:20:05s.  Time for last 1,000,000:    2s.  Last read position: chr20:35,654,641
INFO	2026-06-08 09:00:12	MarkDuplicates	Tracking 159624 as yet unmatched pairs. 29948 records in RAM.
INFO	2026-06-08 09:00:13	MarkDuplicates	Read   584,000,000 records.  Elapsed time: 00:20:07s.  Time for last 1,000,000:    1s.  Last read position: chr20:38,033,939
INFO	2026-06-08 09:00:13	MarkDuplicates	Tracking 156663 as yet unmatched pairs. 26987 records in RAM.
INFO	2026-06-08 09:00:15	MarkDuplicates	Read   585,000,000 records.  Elapsed time: 00:20:09s.  Time for last 1,000,000:    1s.  Last read position: chr20:41,426,096
INFO	2026-06-08 09:00:15	MarkDuplicates	Tracking 154147 as yet unmatched pairs. 24470 records in RAM.
INFO	2026-06-08 09:00:17	MarkDuplicates	Read   586,000,000 records.  Elapsed time: 00:20:11s.  Time for last 1,000,000:    1s.  Last read position: chr20:45,420,677
INFO	2026-06-08 09:00:17	MarkDuplicates	Tracking 151981 as yet unmatched pairs. 22304 records in RAM.
INFO	2026-06-08 09:00:19	MarkDuplicates	Read   587,000,000 records.  Elapsed time: 00:20:13s.  Time for last 1,000,000:    1s.  Last read position: chr20:46,010,009
INFO	2026-06-08 09:00:19	MarkDuplicates	Tracking 149495 as yet unmatched pairs. 19818 records in RAM.
INFO	2026-06-08 09:00:21	MarkDuplicates	Read   588,000,000 records.  Elapsed time: 00:20:15s.  Time for last 1,000,000:    2s.  Last read position: chr20:48,629,564
INFO	2026-06-08 09:00:21	MarkDuplicates	Tracking 147140 as yet unmatched pairs. 17463 records in RAM.
INFO	2026-06-08 09:00:23	MarkDuplicates	Read   589,000,000 records.  Elapsed time: 00:20:17s.  Time for last 1,000,000:    1s.  Last read position: chr20:50,891,667
INFO	2026-06-08 09:00:23	MarkDuplicates	Tracking 145009 as yet unmatched pairs. 15332 records in RAM.
INFO	2026-06-08 09:00:25	MarkDuplicates	Read   590,000,000 records.  Elapsed time: 00:20:19s.  Time for last 1,000,000:    1s.  Last read position: chr20:58,889,527
INFO	2026-06-08 09:00:25	MarkDuplicates	Tracking 142418 as yet unmatched pairs. 12739 records in RAM.
INFO	2026-06-08 09:00:27	MarkDuplicates	Read   591,000,000 records.  Elapsed time: 00:20:21s.  Time for last 1,000,000:    1s.  Last read position: chr20:62,307,817
INFO	2026-06-08 09:00:27	MarkDuplicates	Tracking 139878 as yet unmatched pairs. 10199 records in RAM.
INFO	2026-06-08 09:00:29	MarkDuplicates	Read   592,000,000 records.  Elapsed time: 00:20:22s.  Time for last 1,000,000:    1s.  Last read position: chr20:62,656,702
INFO	2026-06-08 09:00:29	MarkDuplicates	Tracking 138461 as yet unmatched pairs. 8782 records in RAM.
INFO	2026-06-08 09:00:31	MarkDuplicates	Read   593,000,000 records.  Elapsed time: 00:20:25s.  Time for last 1,000,000:    2s.  Last read position: chr20:63,286,093
INFO	2026-06-08 09:00:31	MarkDuplicates	Tracking 134571 as yet unmatched pairs. 4892 records in RAM.
INFO	2026-06-08 09:00:32	MarkDuplicates	Read   594,000,000 records.  Elapsed time: 00:20:26s.  Time for last 1,000,000:    1s.  Last read position: chr20:63,735,075
INFO	2026-06-08 09:00:32	MarkDuplicates	Tracking 131645 as yet unmatched pairs. 1958 records in RAM.
INFO	2026-06-08 09:00:34	MarkDuplicates	Read   595,000,000 records.  Elapsed time: 00:20:28s.  Time for last 1,000,000:    2s.  Last read position: chr21:5,147,824
INFO	2026-06-08 09:00:34	MarkDuplicates	Tracking 129292 as yet unmatched pairs. 27204 records in RAM.
INFO	2026-06-08 09:00:36	MarkDuplicates	Read   596,000,000 records.  Elapsed time: 00:20:29s.  Time for last 1,000,000:    1s.  Last read position: chr21:8,216,833
INFO	2026-06-08 09:00:36	MarkDuplicates	Tracking 127638 as yet unmatched pairs. 25543 records in RAM.
INFO	2026-06-08 09:00:37	MarkDuplicates	Read   597,000,000 records.  Elapsed time: 00:20:30s.  Time for last 1,000,000:    1s.  Last read position: chr21:8,258,926
INFO	2026-06-08 09:00:37	MarkDuplicates	Tracking 127119 as yet unmatched pairs. 25024 records in RAM.
INFO	2026-06-08 09:00:38	MarkDuplicates	Read   598,000,000 records.  Elapsed time: 00:20:32s.  Time for last 1,000,000:    1s.  Last read position: chr21:8,399,958
INFO	2026-06-08 09:00:38	MarkDuplicates	Tracking 126830 as yet unmatched pairs. 24731 records in RAM.
INFO	2026-06-08 09:00:39	MarkDuplicates	Read   599,000,000 records.  Elapsed time: 00:20:33s.  Time for last 1,000,000:    1s.  Last read position: chr21:8,441,996
INFO	2026-06-08 09:00:39	MarkDuplicates	Tracking 125406 as yet unmatched pairs. 23299 records in RAM.
INFO	2026-06-08 09:00:40	MarkDuplicates	Read   600,000,000 records.  Elapsed time: 00:20:34s.  Time for last 1,000,000:    1s.  Last read position: chr21:15,730,374
INFO	2026-06-08 09:00:40	MarkDuplicates	Tracking 123243 as yet unmatched pairs. 21136 records in RAM.
INFO	2026-06-08 09:00:42	MarkDuplicates	Read   601,000,000 records.  Elapsed time: 00:20:36s.  Time for last 1,000,000:    1s.  Last read position: chr21:33,522,237
INFO	2026-06-08 09:00:42	MarkDuplicates	Tracking 121204 as yet unmatched pairs. 19097 records in RAM.
INFO	2026-06-08 09:00:44	MarkDuplicates	Read   602,000,000 records.  Elapsed time: 00:20:37s.  Time for last 1,000,000:    1s.  Last read position: chr21:36,709,179
INFO	2026-06-08 09:00:44	MarkDuplicates	Tracking 119058 as yet unmatched pairs. 16950 records in RAM.
INFO	2026-06-08 09:00:46	MarkDuplicates	Read   603,000,000 records.  Elapsed time: 00:20:39s.  Time for last 1,000,000:    2s.  Last read position: chr21:42,565,449
INFO	2026-06-08 09:00:46	MarkDuplicates	Tracking 116530 as yet unmatched pairs. 14422 records in RAM.
INFO	2026-06-08 09:00:47	MarkDuplicates	Read   604,000,000 records.  Elapsed time: 00:20:41s.  Time for last 1,000,000:    1s.  Last read position: chr21:44,227,477
INFO	2026-06-08 09:00:47	MarkDuplicates	Tracking 114400 as yet unmatched pairs. 12292 records in RAM.
INFO	2026-06-08 09:00:49	MarkDuplicates	Read   605,000,000 records.  Elapsed time: 00:20:43s.  Time for last 1,000,000:    2s.  Last read position: chr21:44,910,344
INFO	2026-06-08 09:00:49	MarkDuplicates	Tracking 112815 as yet unmatched pairs. 10707 records in RAM.
INFO	2026-06-08 09:00:51	MarkDuplicates	Read   606,000,000 records.  Elapsed time: 00:20:45s.  Time for last 1,000,000:    1s.  Last read position: chr21:45,981,813
INFO	2026-06-08 09:00:51	MarkDuplicates	Tracking 112485 as yet unmatched pairs. 10377 records in RAM.
INFO	2026-06-08 09:00:53	MarkDuplicates	Read   607,000,000 records.  Elapsed time: 00:20:47s.  Time for last 1,000,000:    1s.  Last read position: chr21:46,003,497
INFO	2026-06-08 09:00:53	MarkDuplicates	Tracking 108900 as yet unmatched pairs. 6792 records in RAM.
INFO	2026-06-08 09:00:56	MarkDuplicates	Read   608,000,000 records.  Elapsed time: 00:20:49s.  Time for last 1,000,000:    2s.  Last read position: chr21:46,125,849
INFO	2026-06-08 09:00:56	MarkDuplicates	Tracking 105379 as yet unmatched pairs. 3271 records in RAM.
INFO	2026-06-08 09:00:59	MarkDuplicates	Read   609,000,000 records.  Elapsed time: 00:20:52s.  Time for last 1,000,000:    3s.  Last read position: chr22:17,097,834
INFO	2026-06-08 09:00:59	MarkDuplicates	Tracking 102186 as yet unmatched pairs. 45505 records in RAM.
INFO	2026-06-08 09:01:00	MarkDuplicates	Read   610,000,000 records.  Elapsed time: 00:20:54s.  Time for last 1,000,000:    1s.  Last read position: chr22:19,359,391
INFO	2026-06-08 09:01:00	MarkDuplicates	Tracking 100070 as yet unmatched pairs. 43389 records in RAM.
INFO	2026-06-08 09:01:02	MarkDuplicates	Read   611,000,000 records.  Elapsed time: 00:20:56s.  Time for last 1,000,000:    1s.  Last read position: chr22:20,582,842
INFO	2026-06-08 09:01:02	MarkDuplicates	Tracking 97803 as yet unmatched pairs. 41122 records in RAM.
INFO	2026-06-08 09:01:04	MarkDuplicates	Read   612,000,000 records.  Elapsed time: 00:20:58s.  Time for last 1,000,000:    1s.  Last read position: chr22:21,931,155
INFO	2026-06-08 09:01:04	MarkDuplicates	Tracking 95143 as yet unmatched pairs. 38462 records in RAM.
INFO	2026-06-08 09:01:06	MarkDuplicates	Read   613,000,000 records.  Elapsed time: 00:21:00s.  Time for last 1,000,000:    1s.  Last read position: chr22:23,284,036
INFO	2026-06-08 09:01:06	MarkDuplicates	Tracking 94100 as yet unmatched pairs. 37419 records in RAM.
INFO	2026-06-08 09:01:08	MarkDuplicates	Read   614,000,000 records.  Elapsed time: 00:21:01s.  Time for last 1,000,000:    1s.  Last read position: chr22:23,973,781
INFO	2026-06-08 09:01:08	MarkDuplicates	Tracking 90054 as yet unmatched pairs. 33373 records in RAM.
INFO	2026-06-08 09:01:09	MarkDuplicates	Read   615,000,000 records.  Elapsed time: 00:21:03s.  Time for last 1,000,000:    1s.  Last read position: chr22:25,181,731
INFO	2026-06-08 09:01:09	MarkDuplicates	Tracking 87504 as yet unmatched pairs. 30823 records in RAM.
INFO	2026-06-08 09:01:11	MarkDuplicates	Read   616,000,000 records.  Elapsed time: 00:21:05s.  Time for last 1,000,000:    1s.  Last read position: chr22:29,288,623
INFO	2026-06-08 09:01:11	MarkDuplicates	Tracking 85338 as yet unmatched pairs. 28657 records in RAM.
INFO	2026-06-08 09:01:13	MarkDuplicates	Read   617,000,000 records.  Elapsed time: 00:21:07s.  Time for last 1,000,000:    1s.  Last read position: chr22:30,578,941
INFO	2026-06-08 09:01:13	MarkDuplicates	Tracking 82763 as yet unmatched pairs. 26082 records in RAM.
INFO	2026-06-08 09:01:15	MarkDuplicates	Read   618,000,000 records.  Elapsed time: 00:21:08s.  Time for last 1,000,000:    1s.  Last read position: chr22:35,659,233
INFO	2026-06-08 09:01:15	MarkDuplicates	Tracking 80522 as yet unmatched pairs. 23841 records in RAM.
INFO	2026-06-08 09:01:16	MarkDuplicates	Read   619,000,000 records.  Elapsed time: 00:21:10s.  Time for last 1,000,000:    1s.  Last read position: chr22:36,306,413
INFO	2026-06-08 09:01:16	MarkDuplicates	Tracking 78484 as yet unmatched pairs. 21803 records in RAM.
INFO	2026-06-08 09:01:18	MarkDuplicates	Read   620,000,000 records.  Elapsed time: 00:21:12s.  Time for last 1,000,000:    1s.  Last read position: chr22:37,625,867
INFO	2026-06-08 09:01:18	MarkDuplicates	Tracking 76131 as yet unmatched pairs. 19450 records in RAM.
INFO	2026-06-08 09:01:20	MarkDuplicates	Read   621,000,000 records.  Elapsed time: 00:21:14s.  Time for last 1,000,000:    1s.  Last read position: chr22:38,486,118
INFO	2026-06-08 09:01:20	MarkDuplicates	Tracking 74429 as yet unmatched pairs. 17748 records in RAM.
INFO	2026-06-08 09:01:21	MarkDuplicates	Read   622,000,000 records.  Elapsed time: 00:21:15s.  Time for last 1,000,000:    1s.  Last read position: chr22:40,266,046
INFO	2026-06-08 09:01:21	MarkDuplicates	Tracking 71326 as yet unmatched pairs. 14645 records in RAM.
INFO	2026-06-08 09:01:23	MarkDuplicates	Read   623,000,000 records.  Elapsed time: 00:21:17s.  Time for last 1,000,000:    1s.  Last read position: chr22:41,636,722
INFO	2026-06-08 09:01:23	MarkDuplicates	Tracking 69260 as yet unmatched pairs. 12578 records in RAM.
INFO	2026-06-08 09:01:25	MarkDuplicates	Read   624,000,000 records.  Elapsed time: 00:21:19s.  Time for last 1,000,000:    1s.  Last read position: chr22:44,185,831
INFO	2026-06-08 09:01:25	MarkDuplicates	Tracking 66733 as yet unmatched pairs. 10051 records in RAM.
INFO	2026-06-08 09:01:26	MarkDuplicates	Read   625,000,000 records.  Elapsed time: 00:21:20s.  Time for last 1,000,000:    1s.  Last read position: chr22:46,707,854
INFO	2026-06-08 09:01:26	MarkDuplicates	Tracking 64013 as yet unmatched pairs. 7331 records in RAM.
INFO	2026-06-08 09:01:28	MarkDuplicates	Read   626,000,000 records.  Elapsed time: 00:21:22s.  Time for last 1,000,000:    1s.  Last read position: chr22:50,288,767
INFO	2026-06-08 09:01:28	MarkDuplicates	Tracking 62103 as yet unmatched pairs. 5421 records in RAM.
INFO	2026-06-08 09:01:30	MarkDuplicates	Read   627,000,000 records.  Elapsed time: 00:21:24s.  Time for last 1,000,000:    2s.  Last read position: chr22:50,529,588
INFO	2026-06-08 09:01:30	MarkDuplicates	Tracking 59654 as yet unmatched pairs. 2972 records in RAM.
INFO	2026-06-08 09:01:32	MarkDuplicates	Read   628,000,000 records.  Elapsed time: 00:21:26s.  Time for last 1,000,000:    2s.  Last read position: chrX:2,830,065
INFO	2026-06-08 09:01:32	MarkDuplicates	Tracking 55347 as yet unmatched pairs. 40643 records in RAM.
INFO	2026-06-08 09:01:34	MarkDuplicates	Read   629,000,000 records.  Elapsed time: 00:21:27s.  Time for last 1,000,000:    1s.  Last read position: chrX:13,763,767
INFO	2026-06-08 09:01:34	MarkDuplicates	Tracking 53315 as yet unmatched pairs. 38611 records in RAM.
INFO	2026-06-08 09:01:35	MarkDuplicates	Read   630,000,000 records.  Elapsed time: 00:21:29s.  Time for last 1,000,000:    1s.  Last read position: chrX:30,854,334
INFO	2026-06-08 09:01:35	MarkDuplicates	Tracking 51235 as yet unmatched pairs. 36509 records in RAM.
INFO	2026-06-08 09:01:37	MarkDuplicates	Read   631,000,000 records.  Elapsed time: 00:21:31s.  Time for last 1,000,000:    1s.  Last read position: chrX:47,033,717
INFO	2026-06-08 09:01:37	MarkDuplicates	Tracking 49146 as yet unmatched pairs. 34418 records in RAM.
INFO	2026-06-08 09:01:39	MarkDuplicates	Read   632,000,000 records.  Elapsed time: 00:21:33s.  Time for last 1,000,000:    1s.  Last read position: chrX:48,602,062
INFO	2026-06-08 09:01:39	MarkDuplicates	Tracking 47404 as yet unmatched pairs. 32676 records in RAM.
INFO	2026-06-08 09:01:40	MarkDuplicates	Read   633,000,000 records.  Elapsed time: 00:21:34s.  Time for last 1,000,000:    1s.  Last read position: chrX:49,175,809
INFO	2026-06-08 09:01:40	MarkDuplicates	Tracking 44719 as yet unmatched pairs. 29991 records in RAM.
INFO	2026-06-08 09:01:42	MarkDuplicates	Read   634,000,000 records.  Elapsed time: 00:21:36s.  Time for last 1,000,000:    1s.  Last read position: chrX:53,539,657
INFO	2026-06-08 09:01:42	MarkDuplicates	Tracking 42368 as yet unmatched pairs. 27640 records in RAM.
INFO	2026-06-08 09:01:44	MarkDuplicates	Read   635,000,000 records.  Elapsed time: 00:21:38s.  Time for last 1,000,000:    1s.  Last read position: chrX:54,558,459
INFO	2026-06-08 09:01:44	MarkDuplicates	Tracking 39833 as yet unmatched pairs. 25105 records in RAM.
INFO	2026-06-08 09:01:45	MarkDuplicates	Read   636,000,000 records.  Elapsed time: 00:21:39s.  Time for last 1,000,000:    1s.  Last read position: chrX:71,107,656
INFO	2026-06-08 09:01:45	MarkDuplicates	Tracking 37670 as yet unmatched pairs. 22940 records in RAM.
INFO	2026-06-08 09:01:47	MarkDuplicates	Read   637,000,000 records.  Elapsed time: 00:21:41s.  Time for last 1,000,000:    1s.  Last read position: chrX:74,421,768
INFO	2026-06-08 09:01:47	MarkDuplicates	Tracking 35697 as yet unmatched pairs. 20967 records in RAM.
INFO	2026-06-08 09:01:49	MarkDuplicates	Read   638,000,000 records.  Elapsed time: 00:21:43s.  Time for last 1,000,000:    1s.  Last read position: chrX:101,911,808
INFO	2026-06-08 09:01:49	MarkDuplicates	Tracking 33138 as yet unmatched pairs. 18407 records in RAM.
INFO	2026-06-08 09:01:50	MarkDuplicates	Read   639,000,000 records.  Elapsed time: 00:21:44s.  Time for last 1,000,000:    1s.  Last read position: chrX:121,048,645
INFO	2026-06-08 09:01:50	MarkDuplicates	Tracking 30842 as yet unmatched pairs. 16111 records in RAM.
INFO	2026-06-08 09:01:53	MarkDuplicates	Read   640,000,000 records.  Elapsed time: 00:21:47s.  Time for last 1,000,000:    2s.  Last read position: chrX:136,946,214
INFO	2026-06-08 09:01:53	MarkDuplicates	Tracking 28767 as yet unmatched pairs. 14034 records in RAM.
INFO	2026-06-08 09:01:55	MarkDuplicates	Read   641,000,000 records.  Elapsed time: 00:21:49s.  Time for last 1,000,000:    2s.  Last read position: chrX:153,767,620
INFO	2026-06-08 09:01:55	MarkDuplicates	Tracking 26748 as yet unmatched pairs. 12014 records in RAM.
INFO	2026-06-08 09:01:57	MarkDuplicates	Read   642,000,000 records.  Elapsed time: 00:21:51s.  Time for last 1,000,000:    2s.  Last read position: chrX:153,959,388
INFO	2026-06-08 09:01:57	MarkDuplicates	Tracking 24503 as yet unmatched pairs. 9769 records in RAM.
INFO	2026-06-08 09:01:59	MarkDuplicates	Read   643,000,000 records.  Elapsed time: 00:21:53s.  Time for last 1,000,000:    1s.  Last read position: chrX:154,353,576
INFO	2026-06-08 09:01:59	MarkDuplicates	Tracking 23816 as yet unmatched pairs. 9082 records in RAM.
INFO	2026-06-08 09:02:01	MarkDuplicates	Read   644,000,000 records.  Elapsed time: 00:21:54s.  Time for last 1,000,000:    1s.  Last read position: chrX:154,364,281
INFO	2026-06-08 09:02:01	MarkDuplicates	Tracking 20221 as yet unmatched pairs. 5487 records in RAM.
INFO	2026-06-08 09:02:02	MarkDuplicates	Read   645,000,000 records.  Elapsed time: 00:21:56s.  Time for last 1,000,000:    1s.  Last read position: chrX:154,446,471
INFO	2026-06-08 09:02:02	MarkDuplicates	Tracking 16499 as yet unmatched pairs. 1765 records in RAM.
INFO	2026-06-08 09:02:04	MarkDuplicates	Read   646,000,000 records.  Elapsed time: 00:21:58s.  Time for last 1,000,000:    1s.  Last read position: GL000220.1:111,300
INFO	2026-06-08 09:02:04	MarkDuplicates	Tracking 14592 as yet unmatched pairs. 5257 records in RAM.
INFO	2026-06-08 09:02:05	MarkDuplicates	Read   647,000,000 records.  Elapsed time: 00:21:59s.  Time for last 1,000,000:    1s.  Last read position: GL000220.1:116,388
INFO	2026-06-08 09:02:05	MarkDuplicates	Tracking 9462 as yet unmatched pairs. 127 records in RAM.
INFO	2026-06-08 09:02:06	MarkDuplicates	Read   648,000,000 records.  Elapsed time: 00:22:00s.  Time for last 1,000,000:    0s.  Last read position: GL000220.1:158,153
INFO	2026-06-08 09:02:06	MarkDuplicates	Tracking 9470 as yet unmatched pairs. 135 records in RAM.
INFO	2026-06-08 09:02:07	MarkDuplicates	Read   649,000,000 records.  Elapsed time: 00:22:01s.  Time for last 1,000,000:    1s.  Last read position: KI270733.1:128,175
INFO	2026-06-08 09:02:07	MarkDuplicates	Tracking 9286 as yet unmatched pairs. 9192 records in RAM.
INFO	2026-06-08 09:02:09	MarkDuplicates	Read   650,000,000 records.  Elapsed time: 00:22:02s.  Time for last 1,000,000:    1s.  Last read position: KI270733.1:133,543
INFO	2026-06-08 09:02:09	MarkDuplicates	Tracking 1191 as yet unmatched pairs. 1097 records in RAM.
INFO	2026-06-08 09:02:10	MarkDuplicates	Read   651,000,000 records.  Elapsed time: 00:22:04s.  Time for last 1,000,000:    1s.  Last read position: KI270733.1:176,368
INFO	2026-06-08 09:02:10	MarkDuplicates	Tracking 147 as yet unmatched pairs. 53 records in RAM.
INFO	2026-06-08 09:02:11	MarkDuplicates	Read 651683282 records. 0 pairs never matched.
INFO	2026-06-08 09:02:58	MarkDuplicates	After buildSortedReadEndLists freeMemory: 204141016; totalMemory: 234881024; maxMemory: 63585648640
INFO	2026-06-08 09:02:58	MarkDuplicates	Will retain up to 1987051520 duplicate indices before spilling to disk.
INFO	2026-06-08 09:03:05	MarkDuplicates	Traversing read pair information and detecting duplicates.
WARNING	2026-06-08 09:03:05	SortingCollection	There is not enough memory per file for buffering. Reading will be unbuffered.
INFO	2026-06-08 09:03:33	OpticalDuplicateFinder	Large duplicate set. size = 1435
INFO	2026-06-08 09:03:33	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:25,594
INFO	2026-06-08 09:04:21	OpticalDuplicateFinder	Large duplicate set. size = 1019
INFO	2026-06-08 09:04:21	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:27,204
INFO	2026-06-08 09:04:21	OpticalDuplicateFinder	Large duplicate set. size = 1033
INFO	2026-06-08 09:04:21	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:30,626
INFO	2026-06-08 09:04:21	OpticalDuplicateFinder	Large duplicate set. size = 1248
INFO	2026-06-08 09:04:21	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:6,024
INFO	2026-06-08 09:04:27	OpticalDuplicateFinder	Large duplicate set. size = 1233
INFO	2026-06-08 09:04:27	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:15,780
INFO	2026-06-08 09:04:33	OpticalDuplicateFinder	Large duplicate set. size = 1520
INFO	2026-06-08 09:04:33	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:1,615
INFO	2026-06-08 09:04:53	OpticalDuplicateFinder	Large duplicate set. size = 1053
INFO	2026-06-08 09:04:53	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:-27,589
INFO	2026-06-08 09:04:53	OpticalDuplicateFinder	Large duplicate set. size = 1151
INFO	2026-06-08 09:04:53	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:-18,277
INFO	2026-06-08 09:04:53	OpticalDuplicateFinder	Large duplicate set. size = 1295
INFO	2026-06-08 09:04:53	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:14,073
INFO	2026-06-08 09:04:53	OpticalDuplicateFinder	Large duplicate set. size = 1003
INFO	2026-06-08 09:04:53	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:31,402
INFO	2026-06-08 09:04:53	OpticalDuplicateFinder	Large duplicate set. size = 1084
INFO	2026-06-08 09:04:53	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:-20,534
INFO	2026-06-08 09:04:53	OpticalDuplicateFinder	Large duplicate set. size = 1010
INFO	2026-06-08 09:04:53	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:-14,807
INFO	2026-06-08 09:04:53	OpticalDuplicateFinder	Large duplicate set. size = 1176
INFO	2026-06-08 09:04:53	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:28,692
INFO	2026-06-08 09:04:53	MarkDuplicates	Traversing fragment information and detecting duplicates.
WARNING	2026-06-08 09:04:53	SortingCollection	There is not enough memory per file for buffering. Reading will be unbuffered.
INFO	2026-06-08 09:05:58	MarkDuplicates	Sorting list of duplicate records.
INFO	2026-06-08 09:06:06	MarkDuplicates	After generateDuplicateIndexes freeMemory: 203968128; totalMemory: 234881024; maxMemory: 63585648640
INFO	2026-06-08 09:06:06	MarkDuplicates	Marking 437002890 records as duplicates.
INFO	2026-06-08 09:06:06	MarkDuplicates	Found 20670426 optical duplicate clusters.
INFO	2026-06-08 09:06:06	MarkDuplicates	Reads are assumed to be ordered by: coordinate
INFO	2026-06-08 09:06:24	MarkDuplicates	Written    10,000,000 records.  Elapsed time: 00:00:17s.  Time for last 10,000,000:   17s.  Last read position: chr1:21,880,358
INFO	2026-06-08 09:06:41	MarkDuplicates	Written    20,000,000 records.  Elapsed time: 00:00:34s.  Time for last 10,000,000:   16s.  Last read position: chr1:40,071,452
INFO	2026-06-08 09:06:57	MarkDuplicates	Written    30,000,000 records.  Elapsed time: 00:00:51s.  Time for last 10,000,000:   16s.  Last read position: chr1:119,925,448
INFO	2026-06-08 09:07:13	MarkDuplicates	Written    40,000,000 records.  Elapsed time: 00:01:07s.  Time for last 10,000,000:   15s.  Last read position: chr1:155,325,382
INFO	2026-06-08 09:07:29	MarkDuplicates	Written    50,000,000 records.  Elapsed time: 00:01:23s.  Time for last 10,000,000:   15s.  Last read position: chr1:200,409,282
INFO	2026-06-08 09:07:45	MarkDuplicates	Written    60,000,000 records.  Elapsed time: 00:01:39s.  Time for last 10,000,000:   16s.  Last read position: chr1:246,902,551
INFO	2026-06-08 09:08:01	MarkDuplicates	Written    70,000,000 records.  Elapsed time: 00:01:55s.  Time for last 10,000,000:   15s.  Last read position: chr2:42,328,913
INFO	2026-06-08 09:08:18	MarkDuplicates	Written    80,000,000 records.  Elapsed time: 00:02:11s.  Time for last 10,000,000:   16s.  Last read position: chr2:101,825,318
INFO	2026-06-08 09:08:34	MarkDuplicates	Written    90,000,000 records.  Elapsed time: 00:02:28s.  Time for last 10,000,000:   16s.  Last read position: chr2:182,728,634
INFO	2026-06-08 09:08:51	MarkDuplicates	Written   100,000,000 records.  Elapsed time: 00:02:44s.  Time for last 10,000,000:   16s.  Last read position: chr2:216,435,347
INFO	2026-06-08 09:09:07	MarkDuplicates	Written   110,000,000 records.  Elapsed time: 00:03:00s.  Time for last 10,000,000:   16s.  Last read position: chr3:36,831,504
INFO	2026-06-08 09:09:24	MarkDuplicates	Written   120,000,000 records.  Elapsed time: 00:03:17s.  Time for last 10,000,000:   16s.  Last read position: chr3:75,214,533
INFO	2026-06-08 09:09:40	MarkDuplicates	Written   130,000,000 records.  Elapsed time: 00:03:33s.  Time for last 10,000,000:   16s.  Last read position: chr3:184,142,271
INFO	2026-06-08 09:09:56	MarkDuplicates	Written   140,000,000 records.  Elapsed time: 00:03:49s.  Time for last 10,000,000:   16s.  Last read position: chr4:56,347,620
INFO	2026-06-08 09:10:13	MarkDuplicates	Written   150,000,000 records.  Elapsed time: 00:04:06s.  Time for last 10,000,000:   16s.  Last read position: chr5:61,538,880
INFO	2026-06-08 09:10:29	MarkDuplicates	Written   160,000,000 records.  Elapsed time: 00:04:22s.  Time for last 10,000,000:   16s.  Last read position: chr5:150,406,907
INFO	2026-06-08 09:10:45	MarkDuplicates	Written   170,000,000 records.  Elapsed time: 00:04:38s.  Time for last 10,000,000:   16s.  Last read position: chr6:8,430,091
INFO	2026-06-08 09:11:01	MarkDuplicates	Written   180,000,000 records.  Elapsed time: 00:04:54s.  Time for last 10,000,000:   16s.  Last read position: chr6:31,933,612
INFO	2026-06-08 09:11:18	MarkDuplicates	Written   190,000,000 records.  Elapsed time: 00:05:11s.  Time for last 10,000,000:   16s.  Last read position: chr6:43,777,510
INFO	2026-06-08 09:11:34	MarkDuplicates	Written   200,000,000 records.  Elapsed time: 00:05:27s.  Time for last 10,000,000:   16s.  Last read position: chr6:159,755,343
INFO	2026-06-08 09:11:50	MarkDuplicates	Written   210,000,000 records.  Elapsed time: 00:05:43s.  Time for last 10,000,000:   16s.  Last read position: chr7:55,163,781
INFO	2026-06-08 09:12:06	MarkDuplicates	Written   220,000,000 records.  Elapsed time: 00:06:00s.  Time for last 10,000,000:   16s.  Last read position: chr7:100,881,311
INFO	2026-06-08 09:12:23	MarkDuplicates	Written   230,000,000 records.  Elapsed time: 00:06:16s.  Time for last 10,000,000:   16s.  Last read position: chr7:150,371,432
INFO	2026-06-08 09:12:39	MarkDuplicates	Written   240,000,000 records.  Elapsed time: 00:06:32s.  Time for last 10,000,000:   16s.  Last read position: chr8:58,605,996
INFO	2026-06-08 09:12:56	MarkDuplicates	Written   250,000,000 records.  Elapsed time: 00:06:49s.  Time for last 10,000,000:   16s.  Last read position: chr8:143,792,718
INFO	2026-06-08 09:13:12	MarkDuplicates	Written   260,000,000 records.  Elapsed time: 00:07:05s.  Time for last 10,000,000:   15s.  Last read position: chr8:143,866,096
INFO	2026-06-08 09:13:28	MarkDuplicates	Written   270,000,000 records.  Elapsed time: 00:07:21s.  Time for last 10,000,000:   16s.  Last read position: chr9:33,264,415
INFO	2026-06-08 09:13:44	MarkDuplicates	Written   280,000,000 records.  Elapsed time: 00:07:37s.  Time for last 10,000,000:   16s.  Last read position: chr9:121,760,187
INFO	2026-06-08 09:14:00	MarkDuplicates	Written   290,000,000 records.  Elapsed time: 00:07:53s.  Time for last 10,000,000:   16s.  Last read position: chr10:5,911,112
INFO	2026-06-08 09:14:17	MarkDuplicates	Written   300,000,000 records.  Elapsed time: 00:08:10s.  Time for last 10,000,000:   16s.  Last read position: chr10:79,844,573
INFO	2026-06-08 09:14:33	MarkDuplicates	Written   310,000,000 records.  Elapsed time: 00:08:26s.  Time for last 10,000,000:   16s.  Last read position: chr11:972,156
INFO	2026-06-08 09:14:49	MarkDuplicates	Written   320,000,000 records.  Elapsed time: 00:08:43s.  Time for last 10,000,000:   16s.  Last read position: chr11:61,366,180
INFO	2026-06-08 09:15:06	MarkDuplicates	Written   330,000,000 records.  Elapsed time: 00:08:59s.  Time for last 10,000,000:   16s.  Last read position: chr11:67,191,103
INFO	2026-06-08 09:15:22	MarkDuplicates	Written   340,000,000 records.  Elapsed time: 00:09:15s.  Time for last 10,000,000:   16s.  Last read position: chr11:117,397,236
INFO	2026-06-08 09:15:38	MarkDuplicates	Written   350,000,000 records.  Elapsed time: 00:09:31s.  Time for last 10,000,000:   16s.  Last read position: chr12:12,181,270
INFO	2026-06-08 09:15:55	MarkDuplicates	Written   360,000,000 records.  Elapsed time: 00:09:48s.  Time for last 10,000,000:   16s.  Last read position: chr12:55,991,365
INFO	2026-06-08 09:16:11	MarkDuplicates	Written   370,000,000 records.  Elapsed time: 00:10:04s.  Time for last 10,000,000:   16s.  Last read position: chr12:110,445,463
INFO	2026-06-08 09:16:27	MarkDuplicates	Written   380,000,000 records.  Elapsed time: 00:10:20s.  Time for last 10,000,000:   16s.  Last read position: chr13:20,975,213
INFO	2026-06-08 09:16:43	MarkDuplicates	Written   390,000,000 records.  Elapsed time: 00:10:36s.  Time for last 10,000,000:   16s.  Last read position: chr14:24,218,074
INFO	2026-06-08 09:17:00	MarkDuplicates	Written   400,000,000 records.  Elapsed time: 00:10:53s.  Time for last 10,000,000:   16s.  Last read position: chr14:74,484,418
INFO	2026-06-08 09:17:16	MarkDuplicates	Written   410,000,000 records.  Elapsed time: 00:11:09s.  Time for last 10,000,000:   15s.  Last read position: chr14:105,742,087
INFO	2026-06-08 09:17:32	MarkDuplicates	Written   420,000,000 records.  Elapsed time: 00:11:25s.  Time for last 10,000,000:   16s.  Last read position: chr15:65,391,886
INFO	2026-06-08 09:17:48	MarkDuplicates	Written   430,000,000 records.  Elapsed time: 00:11:41s.  Time for last 10,000,000:   16s.  Last read position: chr16:1,534,219
INFO	2026-06-08 09:18:04	MarkDuplicates	Written   440,000,000 records.  Elapsed time: 00:11:57s.  Time for last 10,000,000:   16s.  Last read position: chr16:18,345,917
INFO	2026-06-08 09:18:20	MarkDuplicates	Written   450,000,000 records.  Elapsed time: 00:12:14s.  Time for last 10,000,000:   16s.  Last read position: chr16:29,554,967
INFO	2026-06-08 09:18:37	MarkDuplicates	Written   460,000,000 records.  Elapsed time: 00:12:30s.  Time for last 10,000,000:   16s.  Last read position: chr16:67,657,637
INFO	2026-06-08 09:18:53	MarkDuplicates	Written   470,000,000 records.  Elapsed time: 00:12:46s.  Time for last 10,000,000:   16s.  Last read position: chr17:2,040,515
INFO	2026-06-08 09:19:09	MarkDuplicates	Written   480,000,000 records.  Elapsed time: 00:13:02s.  Time for last 10,000,000:   16s.  Last read position: chr17:18,247,294
INFO	2026-06-08 09:19:25	MarkDuplicates	Written   490,000,000 records.  Elapsed time: 00:13:18s.  Time for last 10,000,000:   16s.  Last read position: chr17:41,871,700
INFO	2026-06-08 09:19:41	MarkDuplicates	Written   500,000,000 records.  Elapsed time: 00:13:34s.  Time for last 10,000,000:   16s.  Last read position: chr17:50,190,052
INFO	2026-06-08 09:19:57	MarkDuplicates	Written   510,000,000 records.  Elapsed time: 00:13:51s.  Time for last 10,000,000:   16s.  Last read position: chr17:66,537,017
INFO	2026-06-08 09:20:14	MarkDuplicates	Written   520,000,000 records.  Elapsed time: 00:14:07s.  Time for last 10,000,000:   16s.  Last read position: chr17:82,083,778
INFO	2026-06-08 09:20:29	MarkDuplicates	Written   530,000,000 records.  Elapsed time: 00:14:23s.  Time for last 10,000,000:   15s.  Last read position: chr19:2,431,839
INFO	2026-06-08 09:20:45	MarkDuplicates	Written   540,000,000 records.  Elapsed time: 00:14:39s.  Time for last 10,000,000:   16s.  Last read position: chr19:12,948,684
INFO	2026-06-08 09:21:01	MarkDuplicates	Written   550,000,000 records.  Elapsed time: 00:14:55s.  Time for last 10,000,000:   16s.  Last read position: chr19:35,642,926
INFO	2026-06-08 09:21:17	MarkDuplicates	Written   560,000,000 records.  Elapsed time: 00:15:10s.  Time for last 10,000,000:   15s.  Last read position: chr19:45,470,654
INFO	2026-06-08 09:21:33	MarkDuplicates	Written   570,000,000 records.  Elapsed time: 00:15:26s.  Time for last 10,000,000:   15s.  Last read position: chr19:54,201,159
INFO	2026-06-08 09:21:49	MarkDuplicates	Written   580,000,000 records.  Elapsed time: 00:15:42s.  Time for last 10,000,000:   15s.  Last read position: chr20:23,084,477
INFO	2026-06-08 09:22:05	MarkDuplicates	Written   590,000,000 records.  Elapsed time: 00:15:58s.  Time for last 10,000,000:   15s.  Last read position: chr20:58,889,527
INFO	2026-06-08 09:22:20	MarkDuplicates	Written   600,000,000 records.  Elapsed time: 00:16:13s.  Time for last 10,000,000:   14s.  Last read position: chr21:15,730,374
INFO	2026-06-08 09:22:36	MarkDuplicates	Written   610,000,000 records.  Elapsed time: 00:16:29s.  Time for last 10,000,000:   16s.  Last read position: chr22:19,359,391
INFO	2026-06-08 09:22:52	MarkDuplicates	Written   620,000,000 records.  Elapsed time: 00:16:45s.  Time for last 10,000,000:   15s.  Last read position: chr22:37,625,867
INFO	2026-06-08 09:23:07	MarkDuplicates	Written   630,000,000 records.  Elapsed time: 00:17:01s.  Time for last 10,000,000:   15s.  Last read position: chrX:30,854,334
INFO	2026-06-08 09:23:23	MarkDuplicates	Written   640,000,000 records.  Elapsed time: 00:17:16s.  Time for last 10,000,000:   15s.  Last read position: chrX:136,946,214
INFO	2026-06-08 09:23:37	MarkDuplicates	Written   650,000,000 records.  Elapsed time: 00:17:31s.  Time for last 10,000,000:   14s.  Last read position: KI270733.1:133,543
INFO	2026-06-08 09:23:49	MarkDuplicates	Writing complete. Closing input iterator.
INFO	2026-06-08 09:23:49	MarkDuplicates	Duplicate Index cleanup.
INFO	2026-06-08 09:23:49	MarkDuplicates	Getting Memory Stats.
INFO	2026-06-08 09:23:49	MarkDuplicates	Before output close freeMemory: 203930776; totalMemory: 234881024; maxMemory: 63585648640
INFO	2026-06-08 09:23:49	MarkDuplicates	Closed outputs. Getting more Memory Stats.
INFO	2026-06-08 09:23:49	MarkDuplicates	After output close freeMemory: 104172880; totalMemory: 134217728; maxMemory: 63585648640
[Mon Jun 08 09:23:49 GMT 2026] picard.sam.markduplicates.MarkDuplicates done. Elapsed time: 43.76 minutes.
Runtime.totalMemory()=134217728
ls: *cram: No such file or directory
ls: *.crai: No such file or directory