Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b3/58cd4d93f295961bf41ece9b57a50d/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/77/e1f3a1712b5090e567b0d600f63e33/tih_rna_sample_00588_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b3/58cd4d93f295961bf41ece9b57a50d/.command.run
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa.fai
==> STAGING COMPLETE (5 inputs)
Using GATK jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar
Running:
java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -Xmx60620M -XX:-UsePerfData -XX:ParallelGCThreads=2 -jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar MarkDuplicates --INPUT tih_rna_sample_00588_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam --OUTPUT tih_rna_sample_00588_B23MVV7LT4_1.md.bam --METRICS_FILE tih_rna_sample_00588_B23MVV7LT4_1.md.bam.metrics --TMP_DIR . --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa -REMOVE_DUPLICATES false -VALIDATION_STRINGENCY LENIENT
08:48:36.910 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar!/com/intel/gkl/native/libgkl_compression.so
[Mon Jun 08 08:48:36 GMT 2026] MarkDuplicates --INPUT tih_rna_sample_00588_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam --OUTPUT tih_rna_sample_00588_B23MVV7LT4_1.md.bam --METRICS_FILE tih_rna_sample_00588_B23MVV7LT4_1.md.bam.metrics --REMOVE_DUPLICATES false --TMP_DIR . --VALIDATION_STRINGENCY LENIENT --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --FLOW_MODE false --FLOW_QUALITY_SUM_STRATEGY false --USE_END_IN_UNPAIRED_READS false --USE_UNPAIRED_CLIPPED_END false --UNPAIRED_END_UNCERTAINTY 0 --FLOW_SKIP_FIRST_N_FLOWS 0 --FLOW_Q_IS_KNOWN_END false --FLOW_EFFECTIVE_QUALITY_THRESHOLD 15 --ADD_PG_TAG_TO_READS true --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX <optimized capture of last three ':' separated fields as numeric values> --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --VERBOSITY INFO --QUIET false --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Mon Jun 08 08:48:36 GMT 2026] Executing as ?@nf-b358cd4d93f295961bf41ece9b57a50d-31497-pcgmc on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 17.0.3-internal+0-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:4.4.0.0
INFO 2026-06-08 08:48:36 MarkDuplicates Start of doWork freeMemory: 105828224; totalMemory: 134217728; maxMemory: 63585648640
INFO 2026-06-08 08:48:36 MarkDuplicates Reading input file and constructing read end information.
INFO 2026-06-08 08:48:36 MarkDuplicates Will retain up to 230382784 data points before spilling to disk.
INFO 2026-06-08 08:48:41 MarkDuplicates Read 1,000,000 records. Elapsed time: 00:00:02s. Time for last 1,000,000: 2s. Last read position: chr1:1,297,841
INFO 2026-06-08 08:48:41 MarkDuplicates Tracking 3580 as yet unmatched pairs. 503 records in RAM.
INFO 2026-06-08 08:48:43 MarkDuplicates Read 2,000,000 records. Elapsed time: 00:00:05s. Time for last 1,000,000: 2s. Last read position: chr1:1,739,482
INFO 2026-06-08 08:48:43 MarkDuplicates Tracking 6277 as yet unmatched pairs. 133 records in RAM.
INFO 2026-06-08 08:48:45 MarkDuplicates Read 3,000,000 records. Elapsed time: 00:00:07s. Time for last 1,000,000: 2s. Last read position: chr1:6,197,651
INFO 2026-06-08 08:48:45 MarkDuplicates Tracking 9352 as yet unmatched pairs. 66 records in RAM.
INFO 2026-06-08 08:48:47 MarkDuplicates Read 4,000,000 records. Elapsed time: 00:00:09s. Time for last 1,000,000: 2s. Last read position: chr1:8,862,918
INFO 2026-06-08 08:48:47 MarkDuplicates Tracking 13027 as yet unmatched pairs. 818 records in RAM.
INFO 2026-06-08 08:48:50 MarkDuplicates Read 5,000,000 records. Elapsed time: 00:00:11s. Time for last 1,000,000: 2s. Last read position: chr1:11,090,570
INFO 2026-06-08 08:48:50 MarkDuplicates Tracking 15353 as yet unmatched pairs. 436 records in RAM.
INFO 2026-06-08 08:48:52 MarkDuplicates Read 6,000,000 records. Elapsed time: 00:00:13s. Time for last 1,000,000: 1s. Last read position: chr1:13,780,729
INFO 2026-06-08 08:48:52 MarkDuplicates Tracking 18879 as yet unmatched pairs. 1187 records in RAM.
INFO 2026-06-08 08:48:53 MarkDuplicates Read 7,000,000 records. Elapsed time: 00:00:15s. Time for last 1,000,000: 1s. Last read position: chr1:16,580,936
INFO 2026-06-08 08:48:53 MarkDuplicates Tracking 20630 as yet unmatched pairs. 426 records in RAM.
INFO 2026-06-08 08:48:56 MarkDuplicates Read 8,000,000 records. Elapsed time: 00:00:17s. Time for last 1,000,000: 2s. Last read position: chr1:19,198,652
INFO 2026-06-08 08:48:56 MarkDuplicates Tracking 23404 as yet unmatched pairs. 393 records in RAM.
INFO 2026-06-08 08:48:58 MarkDuplicates Read 9,000,000 records. Elapsed time: 00:00:19s. Time for last 1,000,000: 1s. Last read position: chr1:21,724,000
INFO 2026-06-08 08:48:58 MarkDuplicates Tracking 26261 as yet unmatched pairs. 551 records in RAM.
INFO 2026-06-08 08:49:00 MarkDuplicates Read 10,000,000 records. Elapsed time: 00:00:21s. Time for last 1,000,000: 2s. Last read position: chr1:22,091,496
INFO 2026-06-08 08:49:00 MarkDuplicates Tracking 30135 as yet unmatched pairs. 1581 records in RAM.
INFO 2026-06-08 08:49:01 MarkDuplicates Read 11,000,000 records. Elapsed time: 00:00:23s. Time for last 1,000,000: 1s. Last read position: chr1:22,912,450
INFO 2026-06-08 08:49:01 MarkDuplicates Tracking 31629 as yet unmatched pairs. 149 records in RAM.
INFO 2026-06-08 08:49:04 MarkDuplicates Read 12,000,000 records. Elapsed time: 00:00:25s. Time for last 1,000,000: 2s. Last read position: chr1:25,686,516
INFO 2026-06-08 08:49:04 MarkDuplicates Tracking 34194 as yet unmatched pairs. 134 records in RAM.
INFO 2026-06-08 08:49:05 MarkDuplicates Read 13,000,000 records. Elapsed time: 00:00:27s. Time for last 1,000,000: 1s. Last read position: chr1:27,102,016
INFO 2026-06-08 08:49:05 MarkDuplicates Tracking 37072 as yet unmatched pairs. 285 records in RAM.
INFO 2026-06-08 08:49:08 MarkDuplicates Read 14,000,000 records. Elapsed time: 00:00:29s. Time for last 1,000,000: 2s. Last read position: chr1:28,605,397
INFO 2026-06-08 08:49:08 MarkDuplicates Tracking 39875 as yet unmatched pairs. 211 records in RAM.
INFO 2026-06-08 08:49:10 MarkDuplicates Read 15,000,000 records. Elapsed time: 00:00:32s. Time for last 1,000,000: 2s. Last read position: chr1:31,692,479
INFO 2026-06-08 08:49:10 MarkDuplicates Tracking 43421 as yet unmatched pairs. 935 records in RAM.
INFO 2026-06-08 08:49:12 MarkDuplicates Read 16,000,000 records. Elapsed time: 00:00:34s. Time for last 1,000,000: 1s. Last read position: chr1:32,772,068
INFO 2026-06-08 08:49:12 MarkDuplicates Tracking 46347 as yet unmatched pairs. 1140 records in RAM.
INFO 2026-06-08 08:49:14 MarkDuplicates Read 17,000,000 records. Elapsed time: 00:00:36s. Time for last 1,000,000: 2s. Last read position: chr1:36,036,197
INFO 2026-06-08 08:49:14 MarkDuplicates Tracking 48187 as yet unmatched pairs. 182 records in RAM.
INFO 2026-06-08 08:49:16 MarkDuplicates Read 18,000,000 records. Elapsed time: 00:00:38s. Time for last 1,000,000: 1s. Last read position: chr1:39,257,982
INFO 2026-06-08 08:49:16 MarkDuplicates Tracking 51823 as yet unmatched pairs. 928 records in RAM.
INFO 2026-06-08 08:49:18 MarkDuplicates Read 19,000,000 records. Elapsed time: 00:00:39s. Time for last 1,000,000: 1s. Last read position: chr1:40,076,894
INFO 2026-06-08 08:49:18 MarkDuplicates Tracking 54431 as yet unmatched pairs. 1144 records in RAM.
INFO 2026-06-08 08:49:20 MarkDuplicates Read 20,000,000 records. Elapsed time: 00:00:41s. Time for last 1,000,000: 1s. Last read position: chr1:43,431,300
INFO 2026-06-08 08:49:20 MarkDuplicates Tracking 56297 as yet unmatched pairs. 376 records in RAM.
INFO 2026-06-08 08:49:22 MarkDuplicates Read 21,000,000 records. Elapsed time: 00:00:44s. Time for last 1,000,000: 2s. Last read position: chr1:44,214,744
INFO 2026-06-08 08:49:22 MarkDuplicates Tracking 58998 as yet unmatched pairs. 173 records in RAM.
INFO 2026-06-08 08:49:24 MarkDuplicates Read 22,000,000 records. Elapsed time: 00:00:45s. Time for last 1,000,000: 1s. Last read position: chr1:46,028,789
INFO 2026-06-08 08:49:24 MarkDuplicates Tracking 61817 as yet unmatched pairs. 609 records in RAM.
INFO 2026-06-08 08:49:25 MarkDuplicates Read 23,000,000 records. Elapsed time: 00:00:47s. Time for last 1,000,000: 1s. Last read position: chr1:49,845,344
INFO 2026-06-08 08:49:25 MarkDuplicates Tracking 63831 as yet unmatched pairs. 76 records in RAM.
INFO 2026-06-08 08:49:28 MarkDuplicates Read 24,000,000 records. Elapsed time: 00:00:49s. Time for last 1,000,000: 2s. Last read position: chr1:53,249,417
INFO 2026-06-08 08:49:28 MarkDuplicates Tracking 66605 as yet unmatched pairs. 174 records in RAM.
INFO 2026-06-08 08:49:29 MarkDuplicates Read 25,000,000 records. Elapsed time: 00:00:51s. Time for last 1,000,000: 1s. Last read position: chr1:59,926,594
INFO 2026-06-08 08:49:29 MarkDuplicates Tracking 69288 as yet unmatched pairs. 93 records in RAM.
INFO 2026-06-08 08:49:31 MarkDuplicates Read 26,000,000 records. Elapsed time: 00:00:52s. Time for last 1,000,000: 1s. Last read position: chr1:74,723,191
INFO 2026-06-08 08:49:31 MarkDuplicates Tracking 71605 as yet unmatched pairs. 97 records in RAM.
INFO 2026-06-08 08:49:32 MarkDuplicates Read 27,000,000 records. Elapsed time: 00:00:54s. Time for last 1,000,000: 1s. Last read position: chr1:89,190,193
INFO 2026-06-08 08:49:32 MarkDuplicates Tracking 74390 as yet unmatched pairs. 486 records in RAM.
INFO 2026-06-08 08:49:34 MarkDuplicates Read 28,000,000 records. Elapsed time: 00:00:55s. Time for last 1,000,000: 1s. Last read position: chr1:100,974,822
INFO 2026-06-08 08:49:34 MarkDuplicates Tracking 76461 as yet unmatched pairs. 172 records in RAM.
INFO 2026-06-08 08:49:36 MarkDuplicates Read 29,000,000 records. Elapsed time: 00:00:57s. Time for last 1,000,000: 1s. Last read position: chr1:110,060,545
INFO 2026-06-08 08:49:36 MarkDuplicates Tracking 78892 as yet unmatched pairs. 38 records in RAM.
INFO 2026-06-08 08:49:37 MarkDuplicates Read 30,000,000 records. Elapsed time: 00:00:58s. Time for last 1,000,000: 1s. Last read position: chr1:113,671,776
INFO 2026-06-08 08:49:37 MarkDuplicates Tracking 81759 as yet unmatched pairs. 369 records in RAM.
INFO 2026-06-08 08:49:39 MarkDuplicates Read 31,000,000 records. Elapsed time: 00:01:00s. Time for last 1,000,000: 1s. Last read position: chr1:116,600,307
INFO 2026-06-08 08:49:39 MarkDuplicates Tracking 84240 as yet unmatched pairs. 380 records in RAM.
INFO 2026-06-08 08:49:40 MarkDuplicates Read 32,000,000 records. Elapsed time: 00:01:02s. Time for last 1,000,000: 1s. Last read position: chr1:119,923,779
INFO 2026-06-08 08:49:40 MarkDuplicates Tracking 88941 as yet unmatched pairs. 2530 records in RAM.
INFO 2026-06-08 08:49:42 MarkDuplicates Read 33,000,000 records. Elapsed time: 00:01:03s. Time for last 1,000,000: 1s. Last read position: chr1:120,578,737
INFO 2026-06-08 08:49:42 MarkDuplicates Tracking 88763 as yet unmatched pairs. 157 records in RAM.
INFO 2026-06-08 08:49:43 MarkDuplicates Read 34,000,000 records. Elapsed time: 00:01:05s. Time for last 1,000,000: 1s. Last read position: chr1:145,994,608
INFO 2026-06-08 08:49:43 MarkDuplicates Tracking 91325 as yet unmatched pairs. 1202 records in RAM.
INFO 2026-06-08 08:49:45 MarkDuplicates Read 35,000,000 records. Elapsed time: 00:01:06s. Time for last 1,000,000: 1s. Last read position: chr1:147,622,293
INFO 2026-06-08 08:49:45 MarkDuplicates Tracking 91658 as yet unmatched pairs. 400 records in RAM.
INFO 2026-06-08 08:49:46 MarkDuplicates Read 36,000,000 records. Elapsed time: 00:01:08s. Time for last 1,000,000: 1s. Last read position: chr1:148,968,885
INFO 2026-06-08 08:49:46 MarkDuplicates Tracking 92635 as yet unmatched pairs. 300 records in RAM.
INFO 2026-06-08 08:49:48 MarkDuplicates Read 37,000,000 records. Elapsed time: 00:01:09s. Time for last 1,000,000: 1s. Last read position: chr1:149,923,509
INFO 2026-06-08 08:49:48 MarkDuplicates Tracking 93959 as yet unmatched pairs. 406 records in RAM.
INFO 2026-06-08 08:49:50 MarkDuplicates Read 38,000,000 records. Elapsed time: 00:01:11s. Time for last 1,000,000: 2s. Last read position: chr1:150,648,629
INFO 2026-06-08 08:49:50 MarkDuplicates Tracking 96542 as yet unmatched pairs. 299 records in RAM.
INFO 2026-06-08 08:49:52 MarkDuplicates Read 39,000,000 records. Elapsed time: 00:01:14s. Time for last 1,000,000: 2s. Last read position: chr1:151,307,669
INFO 2026-06-08 08:49:52 MarkDuplicates Tracking 99761 as yet unmatched pairs. 1047 records in RAM.
INFO 2026-06-08 08:49:54 MarkDuplicates Read 40,000,000 records. Elapsed time: 00:01:15s. Time for last 1,000,000: 1s. Last read position: chr1:153,663,043
INFO 2026-06-08 08:49:54 MarkDuplicates Tracking 101778 as yet unmatched pairs. 704 records in RAM.
INFO 2026-06-08 08:49:56 MarkDuplicates Read 41,000,000 records. Elapsed time: 00:01:17s. Time for last 1,000,000: 1s. Last read position: chr1:154,172,073
INFO 2026-06-08 08:49:56 MarkDuplicates Tracking 107423 as yet unmatched pairs. 3908 records in RAM.
INFO 2026-06-08 08:49:57 MarkDuplicates Read 42,000,000 records. Elapsed time: 00:01:19s. Time for last 1,000,000: 1s. Last read position: chr1:154,597,125
INFO 2026-06-08 08:49:57 MarkDuplicates Tracking 107634 as yet unmatched pairs. 1627 records in RAM.
INFO 2026-06-08 08:49:59 MarkDuplicates Read 43,000,000 records. Elapsed time: 00:01:20s. Time for last 1,000,000: 1s. Last read position: chr1:155,062,246
INFO 2026-06-08 08:49:59 MarkDuplicates Tracking 110819 as yet unmatched pairs. 2161 records in RAM.
INFO 2026-06-08 08:50:00 MarkDuplicates Read 44,000,000 records. Elapsed time: 00:01:22s. Time for last 1,000,000: 1s. Last read position: chr1:155,351,235
INFO 2026-06-08 08:50:00 MarkDuplicates Tracking 111370 as yet unmatched pairs. 434 records in RAM.
INFO 2026-06-08 08:50:02 MarkDuplicates Read 45,000,000 records. Elapsed time: 00:01:24s. Time for last 1,000,000: 1s. Last read position: chr1:155,966,453
INFO 2026-06-08 08:50:02 MarkDuplicates Tracking 114245 as yet unmatched pairs. 953 records in RAM.
INFO 2026-06-08 08:50:04 MarkDuplicates Read 46,000,000 records. Elapsed time: 00:01:25s. Time for last 1,000,000: 1s. Last read position: chr1:156,293,000
INFO 2026-06-08 08:50:04 MarkDuplicates Tracking 116851 as yet unmatched pairs. 547 records in RAM.
INFO 2026-06-08 08:50:05 MarkDuplicates Read 47,000,000 records. Elapsed time: 00:01:26s. Time for last 1,000,000: 1s. Last read position: chr1:157,803,906
INFO 2026-06-08 08:50:05 MarkDuplicates Tracking 118942 as yet unmatched pairs. 98 records in RAM.
INFO 2026-06-08 08:50:07 MarkDuplicates Read 48,000,000 records. Elapsed time: 00:01:28s. Time for last 1,000,000: 1s. Last read position: chr1:160,325,638
INFO 2026-06-08 08:50:07 MarkDuplicates Tracking 122175 as yet unmatched pairs. 824 records in RAM.
INFO 2026-06-08 08:50:08 MarkDuplicates Read 49,000,000 records. Elapsed time: 00:01:30s. Time for last 1,000,000: 1s. Last read position: chr1:161,215,319
INFO 2026-06-08 08:50:08 MarkDuplicates Tracking 124450 as yet unmatched pairs. 436 records in RAM.
INFO 2026-06-08 08:50:10 MarkDuplicates Read 50,000,000 records. Elapsed time: 00:01:31s. Time for last 1,000,000: 1s. Last read position: chr1:166,849,331
INFO 2026-06-08 08:50:10 MarkDuplicates Tracking 126755 as yet unmatched pairs. 407 records in RAM.
INFO 2026-06-08 08:50:12 MarkDuplicates Read 51,000,000 records. Elapsed time: 00:01:33s. Time for last 1,000,000: 1s. Last read position: chr1:171,557,492
INFO 2026-06-08 08:50:12 MarkDuplicates Tracking 131457 as yet unmatched pairs. 2749 records in RAM.
INFO 2026-06-08 08:50:13 MarkDuplicates Read 52,000,000 records. Elapsed time: 00:01:34s. Time for last 1,000,000: 1s. Last read position: chr1:179,085,798
INFO 2026-06-08 08:50:13 MarkDuplicates Tracking 131575 as yet unmatched pairs. 485 records in RAM.
INFO 2026-06-08 08:50:14 MarkDuplicates Read 53,000,000 records. Elapsed time: 00:01:36s. Time for last 1,000,000: 1s. Last read position: chr1:183,517,812
INFO 2026-06-08 08:50:14 MarkDuplicates Tracking 134229 as yet unmatched pairs. 550 records in RAM.
INFO 2026-06-08 08:50:16 MarkDuplicates Read 54,000,000 records. Elapsed time: 00:01:37s. Time for last 1,000,000: 1s. Last read position: chr1:186,357,589
INFO 2026-06-08 08:50:16 MarkDuplicates Tracking 136919 as yet unmatched pairs. 930 records in RAM.
INFO 2026-06-08 08:50:18 MarkDuplicates Read 55,000,000 records. Elapsed time: 00:01:40s. Time for last 1,000,000: 2s. Last read position: chr1:201,382,714
INFO 2026-06-08 08:50:18 MarkDuplicates Tracking 138956 as yet unmatched pairs. 635 records in RAM.
INFO 2026-06-08 08:50:19 MarkDuplicates Read 56,000,000 records. Elapsed time: 00:01:41s. Time for last 1,000,000: 1s. Last read position: chr1:203,185,265
INFO 2026-06-08 08:50:19 MarkDuplicates Tracking 141839 as yet unmatched pairs. 1015 records in RAM.
INFO 2026-06-08 08:50:21 MarkDuplicates Read 57,000,000 records. Elapsed time: 00:01:42s. Time for last 1,000,000: 1s. Last read position: chr1:204,443,563
INFO 2026-06-08 08:50:21 MarkDuplicates Tracking 143470 as yet unmatched pairs. 238 records in RAM.
INFO 2026-06-08 08:50:23 MarkDuplicates Read 58,000,000 records. Elapsed time: 00:01:44s. Time for last 1,000,000: 1s. Last read position: chr1:207,325,691
INFO 2026-06-08 08:50:23 MarkDuplicates Tracking 145954 as yet unmatched pairs. 279 records in RAM.
INFO 2026-06-08 08:50:24 MarkDuplicates Read 59,000,000 records. Elapsed time: 00:01:45s. Time for last 1,000,000: 1s. Last read position: chr1:214,383,842
INFO 2026-06-08 08:50:24 MarkDuplicates Tracking 148462 as yet unmatched pairs. 345 records in RAM.
INFO 2026-06-08 08:50:25 MarkDuplicates Read 60,000,000 records. Elapsed time: 00:01:47s. Time for last 1,000,000: 1s. Last read position: chr1:223,755,529
INFO 2026-06-08 08:50:25 MarkDuplicates Tracking 150943 as yet unmatched pairs. 408 records in RAM.
INFO 2026-06-08 08:50:28 MarkDuplicates Read 61,000,000 records. Elapsed time: 00:01:49s. Time for last 1,000,000: 2s. Last read position: chr1:225,867,928
INFO 2026-06-08 08:50:28 MarkDuplicates Tracking 155192 as yet unmatched pairs. 2324 records in RAM.
INFO 2026-06-08 08:50:29 MarkDuplicates Read 62,000,000 records. Elapsed time: 00:01:51s. Time for last 1,000,000: 1s. Last read position: chr1:228,148,754
INFO 2026-06-08 08:50:29 MarkDuplicates Tracking 157179 as yet unmatched pairs. 1514 records in RAM.
INFO 2026-06-08 08:50:31 MarkDuplicates Read 63,000,000 records. Elapsed time: 00:01:52s. Time for last 1,000,000: 1s. Last read position: chr1:230,709,990
INFO 2026-06-08 08:50:31 MarkDuplicates Tracking 159133 as yet unmatched pairs. 220 records in RAM.
INFO 2026-06-08 08:50:32 MarkDuplicates Read 64,000,000 records. Elapsed time: 00:01:54s. Time for last 1,000,000: 1s. Last read position: chr1:235,489,196
INFO 2026-06-08 08:50:32 MarkDuplicates Tracking 162269 as yet unmatched pairs. 219 records in RAM.
INFO 2026-06-08 08:50:34 MarkDuplicates Read 65,000,000 records. Elapsed time: 00:01:56s. Time for last 1,000,000: 1s. Last read position: chr1:244,843,041
INFO 2026-06-08 08:50:34 MarkDuplicates Tracking 165092 as yet unmatched pairs. 473 records in RAM.
INFO 2026-06-08 08:50:37 MarkDuplicates Read 66,000,000 records. Elapsed time: 00:01:59s. Time for last 1,000,000: 3s. Last read position: chr2:1,649,407
INFO 2026-06-08 08:50:37 MarkDuplicates Tracking 167547 as yet unmatched pairs. 165832 records in RAM.
INFO 2026-06-08 08:50:39 MarkDuplicates Read 67,000,000 records. Elapsed time: 00:02:01s. Time for last 1,000,000: 2s. Last read position: chr2:11,343,995
INFO 2026-06-08 08:50:39 MarkDuplicates Tracking 170592 as yet unmatched pairs. 168851 records in RAM.
INFO 2026-06-08 08:50:41 MarkDuplicates Read 68,000,000 records. Elapsed time: 00:02:03s. Time for last 1,000,000: 2s. Last read position: chr2:20,447,954
INFO 2026-06-08 08:50:41 MarkDuplicates Tracking 174129 as yet unmatched pairs. 172357 records in RAM.
INFO 2026-06-08 08:50:44 MarkDuplicates Read 69,000,000 records. Elapsed time: 00:02:05s. Time for last 1,000,000: 2s. Last read position: chr2:27,025,946
INFO 2026-06-08 08:50:44 MarkDuplicates Tracking 175467 as yet unmatched pairs. 173672 records in RAM.
INFO 2026-06-08 08:50:45 MarkDuplicates Read 70,000,000 records. Elapsed time: 00:02:07s. Time for last 1,000,000: 1s. Last read position: chr2:27,664,424
INFO 2026-06-08 08:50:45 MarkDuplicates Tracking 178424 as yet unmatched pairs. 176609 records in RAM.
INFO 2026-06-08 08:50:47 MarkDuplicates Read 71,000,000 records. Elapsed time: 00:02:09s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,253
INFO 2026-06-08 08:50:47 MarkDuplicates Tracking 211823 as yet unmatched pairs. 176379 records in RAM.
INFO 2026-06-08 08:50:49 MarkDuplicates Read 72,000,000 records. Elapsed time: 00:02:10s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,264
INFO 2026-06-08 08:50:49 MarkDuplicates Tracking 548738 as yet unmatched pairs. 152082 records in RAM.
INFO 2026-06-08 08:50:51 MarkDuplicates Read 73,000,000 records. Elapsed time: 00:02:13s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,264
INFO 2026-06-08 08:50:51 MarkDuplicates Tracking 1217625 as yet unmatched pairs. 103394 records in RAM.
INFO 2026-06-08 08:50:53 MarkDuplicates Read 74,000,000 records. Elapsed time: 00:02:14s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,406
INFO 2026-06-08 08:50:53 MarkDuplicates Tracking 1339304 as yet unmatched pairs. 95004 records in RAM.
INFO 2026-06-08 08:50:54 MarkDuplicates Read 75,000,000 records. Elapsed time: 00:02:16s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,410
INFO 2026-06-08 08:50:54 MarkDuplicates Tracking 1367160 as yet unmatched pairs. 93204 records in RAM.
INFO 2026-06-08 08:50:56 MarkDuplicates Read 76,000,000 records. Elapsed time: 00:02:17s. Time for last 1,000,000: 1s. Last read position: chr2:38,074,974
INFO 2026-06-08 08:50:56 MarkDuplicates Tracking 1430886 as yet unmatched pairs. 88253 records in RAM.
INFO 2026-06-08 08:50:57 MarkDuplicates Read 77,000,000 records. Elapsed time: 00:02:19s. Time for last 1,000,000: 1s. Last read position: chr2:43,505,675
INFO 2026-06-08 08:50:57 MarkDuplicates Tracking 1427724 as yet unmatched pairs. 85060 records in RAM.
INFO 2026-06-08 08:50:59 MarkDuplicates Read 78,000,000 records. Elapsed time: 00:02:20s. Time for last 1,000,000: 1s. Last read position: chr2:53,787,203
INFO 2026-06-08 08:50:59 MarkDuplicates Tracking 1424341 as yet unmatched pairs. 81652 records in RAM.
INFO 2026-06-08 08:51:01 MarkDuplicates Read 79,000,000 records. Elapsed time: 00:02:22s. Time for last 1,000,000: 1s. Last read position: chr2:55,647,354
INFO 2026-06-08 08:51:01 MarkDuplicates Tracking 1421814 as yet unmatched pairs. 79113 records in RAM.
INFO 2026-06-08 08:51:02 MarkDuplicates Read 80,000,000 records. Elapsed time: 00:02:24s. Time for last 1,000,000: 1s. Last read position: chr2:65,091,051
INFO 2026-06-08 08:51:02 MarkDuplicates Tracking 1419971 as yet unmatched pairs. 77223 records in RAM.
INFO 2026-06-08 08:51:04 MarkDuplicates Read 81,000,000 records. Elapsed time: 00:02:25s. Time for last 1,000,000: 1s. Last read position: chr2:71,349,042
INFO 2026-06-08 08:51:04 MarkDuplicates Tracking 1417592 as yet unmatched pairs. 74813 records in RAM.
INFO 2026-06-08 08:51:06 MarkDuplicates Read 82,000,000 records. Elapsed time: 00:02:27s. Time for last 1,000,000: 2s. Last read position: chr2:74,427,423
INFO 2026-06-08 08:51:06 MarkDuplicates Tracking 1414385 as yet unmatched pairs. 71575 records in RAM.
INFO 2026-06-08 08:51:07 MarkDuplicates Read 83,000,000 records. Elapsed time: 00:02:29s. Time for last 1,000,000: 1s. Last read position: chr2:85,401,863
INFO 2026-06-08 08:51:07 MarkDuplicates Tracking 1412299 as yet unmatched pairs. 69449 records in RAM.
INFO 2026-06-08 08:51:09 MarkDuplicates Read 84,000,000 records. Elapsed time: 00:02:30s. Time for last 1,000,000: 1s. Last read position: chr2:88,857,253
INFO 2026-06-08 08:51:09 MarkDuplicates Tracking 1415800 as yet unmatched pairs. 72917 records in RAM.
INFO 2026-06-08 08:51:11 MarkDuplicates Read 85,000,000 records. Elapsed time: 00:02:32s. Time for last 1,000,000: 1s. Last read position: chr2:96,275,296
INFO 2026-06-08 08:51:11 MarkDuplicates Tracking 1407776 as yet unmatched pairs. 64855 records in RAM.
INFO 2026-06-08 08:51:12 MarkDuplicates Read 86,000,000 records. Elapsed time: 00:02:34s. Time for last 1,000,000: 1s. Last read position: chr2:98,552,926
INFO 2026-06-08 08:51:12 MarkDuplicates Tracking 1405400 as yet unmatched pairs. 62447 records in RAM.
INFO 2026-06-08 08:51:14 MarkDuplicates Read 87,000,000 records. Elapsed time: 00:02:35s. Time for last 1,000,000: 1s. Last read position: chr2:107,860,776
INFO 2026-06-08 08:51:14 MarkDuplicates Tracking 1402707 as yet unmatched pairs. 59725 records in RAM.
INFO 2026-06-08 08:51:16 MarkDuplicates Read 88,000,000 records. Elapsed time: 00:02:38s. Time for last 1,000,000: 2s. Last read position: chr2:110,563,330
INFO 2026-06-08 08:51:16 MarkDuplicates Tracking 1401633 as yet unmatched pairs. 58649 records in RAM.
INFO 2026-06-08 08:51:19 MarkDuplicates Read 89,000,000 records. Elapsed time: 00:02:40s. Time for last 1,000,000: 2s. Last read position: chr2:119,436,972
INFO 2026-06-08 08:51:19 MarkDuplicates Tracking 1399326 as yet unmatched pairs. 56322 records in RAM.
INFO 2026-06-08 08:51:21 MarkDuplicates Read 90,000,000 records. Elapsed time: 00:02:42s. Time for last 1,000,000: 2s. Last read position: chr2:131,126,724
INFO 2026-06-08 08:51:21 MarkDuplicates Tracking 1397271 as yet unmatched pairs. 54217 records in RAM.
INFO 2026-06-08 08:51:22 MarkDuplicates Read 91,000,000 records. Elapsed time: 00:02:44s. Time for last 1,000,000: 1s. Last read position: chr2:149,330,703
INFO 2026-06-08 08:51:22 MarkDuplicates Tracking 1394405 as yet unmatched pairs. 51328 records in RAM.
INFO 2026-06-08 08:51:24 MarkDuplicates Read 92,000,000 records. Elapsed time: 00:02:46s. Time for last 1,000,000: 1s. Last read position: chr2:161,385,499
INFO 2026-06-08 08:51:24 MarkDuplicates Tracking 1392317 as yet unmatched pairs. 49223 records in RAM.
INFO 2026-06-08 08:51:26 MarkDuplicates Read 93,000,000 records. Elapsed time: 00:02:47s. Time for last 1,000,000: 1s. Last read position: chr2:172,564,990
INFO 2026-06-08 08:51:26 MarkDuplicates Tracking 1390048 as yet unmatched pairs. 46940 records in RAM.
INFO 2026-06-08 08:51:28 MarkDuplicates Read 94,000,000 records. Elapsed time: 00:02:49s. Time for last 1,000,000: 1s. Last read position: chr2:178,574,880
INFO 2026-06-08 08:51:28 MarkDuplicates Tracking 1387361 as yet unmatched pairs. 44243 records in RAM.
INFO 2026-06-08 08:51:29 MarkDuplicates Read 95,000,000 records. Elapsed time: 00:02:51s. Time for last 1,000,000: 1s. Last read position: chr2:188,994,233
INFO 2026-06-08 08:51:29 MarkDuplicates Tracking 1387249 as yet unmatched pairs. 44114 records in RAM.
INFO 2026-06-08 08:51:31 MarkDuplicates Read 96,000,000 records. Elapsed time: 00:02:52s. Time for last 1,000,000: 1s. Last read position: chr2:189,580,469
INFO 2026-06-08 08:51:31 MarkDuplicates Tracking 1382448 as yet unmatched pairs. 39290 records in RAM.
INFO 2026-06-08 08:51:33 MarkDuplicates Read 97,000,000 records. Elapsed time: 00:02:54s. Time for last 1,000,000: 1s. Last read position: chr2:197,408,572
INFO 2026-06-08 08:51:33 MarkDuplicates Tracking 1379918 as yet unmatched pairs. 36721 records in RAM.
INFO 2026-06-08 08:51:34 MarkDuplicates Read 98,000,000 records. Elapsed time: 00:02:56s. Time for last 1,000,000: 1s. Last read position: chr2:203,289,770
INFO 2026-06-08 08:51:34 MarkDuplicates Tracking 1377280 as yet unmatched pairs. 34066 records in RAM.
INFO 2026-06-08 08:51:36 MarkDuplicates Read 99,000,000 records. Elapsed time: 00:02:57s. Time for last 1,000,000: 1s. Last read position: chr2:215,361,521
INFO 2026-06-08 08:51:36 MarkDuplicates Tracking 1385182 as yet unmatched pairs. 41941 records in RAM.
INFO 2026-06-08 08:51:38 MarkDuplicates Read 100,000,000 records. Elapsed time: 00:02:59s. Time for last 1,000,000: 1s. Last read position: chr2:215,372,348
INFO 2026-06-08 08:51:38 MarkDuplicates Tracking 1385274 as yet unmatched pairs. 42033 records in RAM.
INFO 2026-06-08 08:51:39 MarkDuplicates Read 101,000,000 records. Elapsed time: 00:03:01s. Time for last 1,000,000: 1s. Last read position: chr2:215,383,388
INFO 2026-06-08 08:51:39 MarkDuplicates Tracking 1377484 as yet unmatched pairs. 34233 records in RAM.
INFO 2026-06-08 08:51:41 MarkDuplicates Read 102,000,000 records. Elapsed time: 00:03:02s. Time for last 1,000,000: 1s. Last read position: chr2:215,404,466
INFO 2026-06-08 08:51:41 MarkDuplicates Tracking 1377422 as yet unmatched pairs. 34135 records in RAM.
INFO 2026-06-08 08:51:42 MarkDuplicates Read 103,000,000 records. Elapsed time: 00:03:04s. Time for last 1,000,000: 1s. Last read position: chr2:215,420,738
INFO 2026-06-08 08:51:42 MarkDuplicates Tracking 1372255 as yet unmatched pairs. 28963 records in RAM.
INFO 2026-06-08 08:51:44 MarkDuplicates Read 104,000,000 records. Elapsed time: 00:03:06s. Time for last 1,000,000: 1s. Last read position: chr2:216,137,146
INFO 2026-06-08 08:51:44 MarkDuplicates Tracking 1363729 as yet unmatched pairs. 20428 records in RAM.
INFO 2026-06-08 08:51:46 MarkDuplicates Read 105,000,000 records. Elapsed time: 00:03:07s. Time for last 1,000,000: 1s. Last read position: chr2:218,403,355
INFO 2026-06-08 08:51:46 MarkDuplicates Tracking 1360942 as yet unmatched pairs. 17625 records in RAM.
INFO 2026-06-08 08:51:48 MarkDuplicates Read 106,000,000 records. Elapsed time: 00:03:09s. Time for last 1,000,000: 1s. Last read position: chr2:219,542,087
INFO 2026-06-08 08:51:48 MarkDuplicates Tracking 1358388 as yet unmatched pairs. 15058 records in RAM.
INFO 2026-06-08 08:51:51 MarkDuplicates Read 107,000,000 records. Elapsed time: 00:03:12s. Time for last 1,000,000: 2s. Last read position: chr2:230,212,965
INFO 2026-06-08 08:51:51 MarkDuplicates Tracking 1355881 as yet unmatched pairs. 12507 records in RAM.
INFO 2026-06-08 08:51:53 MarkDuplicates Read 108,000,000 records. Elapsed time: 00:03:14s. Time for last 1,000,000: 2s. Last read position: chr2:233,060,500
INFO 2026-06-08 08:51:53 MarkDuplicates Tracking 1353439 as yet unmatched pairs. 10036 records in RAM.
INFO 2026-06-08 08:51:55 MarkDuplicates Read 109,000,000 records. Elapsed time: 00:03:16s. Time for last 1,000,000: 2s. Last read position: chr2:237,365,811
INFO 2026-06-08 08:51:55 MarkDuplicates Tracking 1351600 as yet unmatched pairs. 8170 records in RAM.
INFO 2026-06-08 08:51:56 MarkDuplicates Read 110,000,000 records. Elapsed time: 00:03:18s. Time for last 1,000,000: 1s. Last read position: chr2:239,068,548
INFO 2026-06-08 08:51:56 MarkDuplicates Tracking 1347591 as yet unmatched pairs. 4147 records in RAM.
INFO 2026-06-08 08:51:58 MarkDuplicates Read 111,000,000 records. Elapsed time: 00:03:20s. Time for last 1,000,000: 1s. Last read position: chr2:241,262,898
INFO 2026-06-08 08:51:58 MarkDuplicates Tracking 1346149 as yet unmatched pairs. 2677 records in RAM.
INFO 2026-06-08 08:52:00 MarkDuplicates Read 112,000,000 records. Elapsed time: 00:03:22s. Time for last 1,000,000: 2s. Last read position: chr3:9,475,137
INFO 2026-06-08 08:52:00 MarkDuplicates Tracking 1342148 as yet unmatched pairs. 70074 records in RAM.
INFO 2026-06-08 08:52:02 MarkDuplicates Read 113,000,000 records. Elapsed time: 00:03:24s. Time for last 1,000,000: 1s. Last read position: chr3:12,839,399
INFO 2026-06-08 08:52:02 MarkDuplicates Tracking 1341131 as yet unmatched pairs. 69039 records in RAM.
INFO 2026-06-08 08:52:04 MarkDuplicates Read 114,000,000 records. Elapsed time: 00:03:25s. Time for last 1,000,000: 1s. Last read position: chr3:15,670,532
INFO 2026-06-08 08:52:04 MarkDuplicates Tracking 1336206 as yet unmatched pairs. 64086 records in RAM.
INFO 2026-06-08 08:52:05 MarkDuplicates Read 115,000,000 records. Elapsed time: 00:03:27s. Time for last 1,000,000: 1s. Last read position: chr3:33,065,463
INFO 2026-06-08 08:52:05 MarkDuplicates Tracking 1334110 as yet unmatched pairs. 61964 records in RAM.
INFO 2026-06-08 08:52:07 MarkDuplicates Read 116,000,000 records. Elapsed time: 00:03:28s. Time for last 1,000,000: 1s. Last read position: chr3:39,408,623
INFO 2026-06-08 08:52:07 MarkDuplicates Tracking 1333557 as yet unmatched pairs. 61367 records in RAM.
INFO 2026-06-08 08:52:09 MarkDuplicates Read 117,000,000 records. Elapsed time: 00:03:30s. Time for last 1,000,000: 1s. Last read position: chr3:45,026,433
INFO 2026-06-08 08:52:09 MarkDuplicates Tracking 1328745 as yet unmatched pairs. 56533 records in RAM.
INFO 2026-06-08 08:52:10 MarkDuplicates Read 118,000,000 records. Elapsed time: 00:03:32s. Time for last 1,000,000: 1s. Last read position: chr3:47,123,291
INFO 2026-06-08 08:52:10 MarkDuplicates Tracking 1326089 as yet unmatched pairs. 53868 records in RAM.
INFO 2026-06-08 08:52:12 MarkDuplicates Read 119,000,000 records. Elapsed time: 00:03:33s. Time for last 1,000,000: 1s. Last read position: chr3:48,443,889
INFO 2026-06-08 08:52:12 MarkDuplicates Tracking 1323333 as yet unmatched pairs. 51094 records in RAM.
INFO 2026-06-08 08:52:14 MarkDuplicates Read 120,000,000 records. Elapsed time: 00:03:35s. Time for last 1,000,000: 1s. Last read position: chr3:49,056,991
INFO 2026-06-08 08:52:14 MarkDuplicates Tracking 1320724 as yet unmatched pairs. 48470 records in RAM.
INFO 2026-06-08 08:52:15 MarkDuplicates Read 121,000,000 records. Elapsed time: 00:03:37s. Time for last 1,000,000: 1s. Last read position: chr3:49,705,026
INFO 2026-06-08 08:52:15 MarkDuplicates Tracking 1317724 as yet unmatched pairs. 45447 records in RAM.
INFO 2026-06-08 08:52:17 MarkDuplicates Read 122,000,000 records. Elapsed time: 00:03:38s. Time for last 1,000,000: 1s. Last read position: chr3:51,392,782
INFO 2026-06-08 08:52:17 MarkDuplicates Tracking 1315106 as yet unmatched pairs. 42810 records in RAM.
INFO 2026-06-08 08:52:18 MarkDuplicates Read 123,000,000 records. Elapsed time: 00:03:40s. Time for last 1,000,000: 1s. Last read position: chr3:52,507,637
INFO 2026-06-08 08:52:19 MarkDuplicates Tracking 1312278 as yet unmatched pairs. 39972 records in RAM.
INFO 2026-06-08 08:52:20 MarkDuplicates Read 124,000,000 records. Elapsed time: 00:03:41s. Time for last 1,000,000: 1s. Last read position: chr3:57,575,577
INFO 2026-06-08 08:52:20 MarkDuplicates Tracking 1310642 as yet unmatched pairs. 38314 records in RAM.
INFO 2026-06-08 08:52:22 MarkDuplicates Read 125,000,000 records. Elapsed time: 00:03:43s. Time for last 1,000,000: 1s. Last read position: chr3:69,077,802
INFO 2026-06-08 08:52:22 MarkDuplicates Tracking 1306918 as yet unmatched pairs. 34545 records in RAM.
INFO 2026-06-08 08:52:24 MarkDuplicates Read 126,000,000 records. Elapsed time: 00:03:46s. Time for last 1,000,000: 2s. Last read position: chr3:100,748,439
INFO 2026-06-08 08:52:24 MarkDuplicates Tracking 1304582 as yet unmatched pairs. 32183 records in RAM.
INFO 2026-06-08 08:52:26 MarkDuplicates Read 127,000,000 records. Elapsed time: 00:03:47s. Time for last 1,000,000: 1s. Last read position: chr3:112,639,810
INFO 2026-06-08 08:52:26 MarkDuplicates Tracking 1303296 as yet unmatched pairs. 30878 records in RAM.
INFO 2026-06-08 08:52:27 MarkDuplicates Read 128,000,000 records. Elapsed time: 00:03:49s. Time for last 1,000,000: 1s. Last read position: chr3:121,695,388
INFO 2026-06-08 08:52:27 MarkDuplicates Tracking 1299952 as yet unmatched pairs. 27509 records in RAM.
INFO 2026-06-08 08:52:29 MarkDuplicates Read 129,000,000 records. Elapsed time: 00:03:50s. Time for last 1,000,000: 1s. Last read position: chr3:124,234,858
INFO 2026-06-08 08:52:29 MarkDuplicates Tracking 1297661 as yet unmatched pairs. 25204 records in RAM.
INFO 2026-06-08 08:52:31 MarkDuplicates Read 130,000,000 records. Elapsed time: 00:03:52s. Time for last 1,000,000: 1s. Last read position: chr3:128,625,872
INFO 2026-06-08 08:52:31 MarkDuplicates Tracking 1295338 as yet unmatched pairs. 22861 records in RAM.
INFO 2026-06-08 08:52:32 MarkDuplicates Read 131,000,000 records. Elapsed time: 00:03:54s. Time for last 1,000,000: 1s. Last read position: chr3:130,680,643
INFO 2026-06-08 08:52:32 MarkDuplicates Tracking 1292013 as yet unmatched pairs. 19508 records in RAM.
INFO 2026-06-08 08:52:34 MarkDuplicates Read 132,000,000 records. Elapsed time: 00:03:56s. Time for last 1,000,000: 2s. Last read position: chr3:139,518,420
INFO 2026-06-08 08:52:34 MarkDuplicates Tracking 1289798 as yet unmatched pairs. 17266 records in RAM.
INFO 2026-06-08 08:52:36 MarkDuplicates Read 133,000,000 records. Elapsed time: 00:03:57s. Time for last 1,000,000: 1s. Last read position: chr3:149,982,819
INFO 2026-06-08 08:52:36 MarkDuplicates Tracking 1287067 as yet unmatched pairs. 14501 records in RAM.
INFO 2026-06-08 08:52:39 MarkDuplicates Read 134,000,000 records. Elapsed time: 00:04:00s. Time for last 1,000,000: 2s. Last read position: chr3:167,697,091
INFO 2026-06-08 08:52:39 MarkDuplicates Tracking 1284814 as yet unmatched pairs. 12216 records in RAM.
INFO 2026-06-08 08:52:41 MarkDuplicates Read 135,000,000 records. Elapsed time: 00:04:02s. Time for last 1,000,000: 1s. Last read position: chr3:180,968,175
INFO 2026-06-08 08:52:41 MarkDuplicates Tracking 1282470 as yet unmatched pairs. 9830 records in RAM.
INFO 2026-06-08 08:52:42 MarkDuplicates Read 136,000,000 records. Elapsed time: 00:04:04s. Time for last 1,000,000: 1s. Last read position: chr3:184,321,891
INFO 2026-06-08 08:52:42 MarkDuplicates Tracking 1280666 as yet unmatched pairs. 7983 records in RAM.
INFO 2026-06-08 08:52:44 MarkDuplicates Read 137,000,000 records. Elapsed time: 00:04:05s. Time for last 1,000,000: 1s. Last read position: chr3:188,524,780
INFO 2026-06-08 08:52:44 MarkDuplicates Tracking 1280454 as yet unmatched pairs. 7727 records in RAM.
INFO 2026-06-08 08:52:45 MarkDuplicates Read 138,000,000 records. Elapsed time: 00:04:07s. Time for last 1,000,000: 1s. Last read position: chr3:195,867,885
INFO 2026-06-08 08:52:45 MarkDuplicates Tracking 1275722 as yet unmatched pairs. 2966 records in RAM.
INFO 2026-06-08 08:52:47 MarkDuplicates Read 139,000,000 records. Elapsed time: 00:04:09s. Time for last 1,000,000: 1s. Last read position: chr4:733,742
INFO 2026-06-08 08:52:47 MarkDuplicates Tracking 1273152 as yet unmatched pairs. 40791 records in RAM.
INFO 2026-06-08 08:52:49 MarkDuplicates Read 140,000,000 records. Elapsed time: 00:04:10s. Time for last 1,000,000: 1s. Last read position: chr4:1,956,124
INFO 2026-06-08 08:52:49 MarkDuplicates Tracking 1269352 as yet unmatched pairs. 36978 records in RAM.
INFO 2026-06-08 08:52:50 MarkDuplicates Read 141,000,000 records. Elapsed time: 00:04:12s. Time for last 1,000,000: 1s. Last read position: chr4:4,420,879
INFO 2026-06-08 08:52:50 MarkDuplicates Tracking 1266640 as yet unmatched pairs. 34233 records in RAM.
INFO 2026-06-08 08:52:52 MarkDuplicates Read 142,000,000 records. Elapsed time: 00:04:13s. Time for last 1,000,000: 1s. Last read position: chr4:10,087,796
INFO 2026-06-08 08:52:52 MarkDuplicates Tracking 1264305 as yet unmatched pairs. 31879 records in RAM.
INFO 2026-06-08 08:52:54 MarkDuplicates Read 143,000,000 records. Elapsed time: 00:04:15s. Time for last 1,000,000: 1s. Last read position: chr4:25,676,518
INFO 2026-06-08 08:52:54 MarkDuplicates Tracking 1261764 as yet unmatched pairs. 29283 records in RAM.
INFO 2026-06-08 08:52:55 MarkDuplicates Read 144,000,000 records. Elapsed time: 00:04:17s. Time for last 1,000,000: 1s. Last read position: chr4:40,438,849
INFO 2026-06-08 08:52:55 MarkDuplicates Tracking 1258978 as yet unmatched pairs. 26488 records in RAM.
INFO 2026-06-08 08:52:57 MarkDuplicates Read 145,000,000 records. Elapsed time: 00:04:18s. Time for last 1,000,000: 1s. Last read position: chr4:56,315,947
INFO 2026-06-08 08:52:57 MarkDuplicates Tracking 1256461 as yet unmatched pairs. 23933 records in RAM.
INFO 2026-06-08 08:52:58 MarkDuplicates Read 146,000,000 records. Elapsed time: 00:04:20s. Time for last 1,000,000: 1s. Last read position: chr4:73,120,303
INFO 2026-06-08 08:52:58 MarkDuplicates Tracking 1254327 as yet unmatched pairs. 21775 records in RAM.
INFO 2026-06-08 08:53:00 MarkDuplicates Read 147,000,000 records. Elapsed time: 00:04:21s. Time for last 1,000,000: 1s. Last read position: chr4:77,066,280
INFO 2026-06-08 08:53:00 MarkDuplicates Tracking 1251944 as yet unmatched pairs. 19360 records in RAM.
INFO 2026-06-08 08:53:02 MarkDuplicates Read 148,000,000 records. Elapsed time: 00:04:23s. Time for last 1,000,000: 1s. Last read position: chr4:86,949,917
INFO 2026-06-08 08:53:02 MarkDuplicates Tracking 1249218 as yet unmatched pairs. 16616 records in RAM.
INFO 2026-06-08 08:53:03 MarkDuplicates Read 149,000,000 records. Elapsed time: 00:04:25s. Time for last 1,000,000: 1s. Last read position: chr4:99,316,244
INFO 2026-06-08 08:53:03 MarkDuplicates Tracking 1247446 as yet unmatched pairs. 14814 records in RAM.
INFO 2026-06-08 08:53:05 MarkDuplicates Read 150,000,000 records. Elapsed time: 00:04:26s. Time for last 1,000,000: 1s. Last read position: chr4:112,431,832
INFO 2026-06-08 08:53:05 MarkDuplicates Tracking 1244502 as yet unmatched pairs. 11846 records in RAM.
INFO 2026-06-08 08:53:07 MarkDuplicates Read 151,000,000 records. Elapsed time: 00:04:28s. Time for last 1,000,000: 2s. Last read position: chr4:127,687,830
INFO 2026-06-08 08:53:07 MarkDuplicates Tracking 1242215 as yet unmatched pairs. 9545 records in RAM.
INFO 2026-06-08 08:53:09 MarkDuplicates Read 152,000,000 records. Elapsed time: 00:04:30s. Time for last 1,000,000: 1s. Last read position: chr4:145,137,888
INFO 2026-06-08 08:53:09 MarkDuplicates Tracking 1239986 as yet unmatched pairs. 7302 records in RAM.
INFO 2026-06-08 08:53:11 MarkDuplicates Read 153,000,000 records. Elapsed time: 00:04:32s. Time for last 1,000,000: 2s. Last read position: chr4:153,788,509
INFO 2026-06-08 08:53:11 MarkDuplicates Tracking 1240621 as yet unmatched pairs. 7893 records in RAM.
INFO 2026-06-08 08:53:13 MarkDuplicates Read 154,000,000 records. Elapsed time: 00:04:34s. Time for last 1,000,000: 2s. Last read position: chr4:168,878,173
INFO 2026-06-08 08:53:13 MarkDuplicates Tracking 1236385 as yet unmatched pairs. 3613 records in RAM.
INFO 2026-06-08 08:53:15 MarkDuplicates Read 155,000,000 records. Elapsed time: 00:04:36s. Time for last 1,000,000: 1s. Last read position: chr4:186,709,569
INFO 2026-06-08 08:53:15 MarkDuplicates Tracking 1233130 as yet unmatched pairs. 336 records in RAM.
INFO 2026-06-08 08:53:17 MarkDuplicates Read 156,000,000 records. Elapsed time: 00:04:38s. Time for last 1,000,000: 2s. Last read position: chr5:6,737,535
INFO 2026-06-08 08:53:17 MarkDuplicates Tracking 1230091 as yet unmatched pairs. 70198 records in RAM.
INFO 2026-06-08 08:53:18 MarkDuplicates Read 157,000,000 records. Elapsed time: 00:04:40s. Time for last 1,000,000: 1s. Last read position: chr5:14,406,571
INFO 2026-06-08 08:53:18 MarkDuplicates Tracking 1228938 as yet unmatched pairs. 69035 records in RAM.
INFO 2026-06-08 08:53:20 MarkDuplicates Read 158,000,000 records. Elapsed time: 00:04:42s. Time for last 1,000,000: 1s. Last read position: chr5:32,143,841
INFO 2026-06-08 08:53:20 MarkDuplicates Tracking 1225282 as yet unmatched pairs. 65360 records in RAM.
INFO 2026-06-08 08:53:22 MarkDuplicates Read 159,000,000 records. Elapsed time: 00:04:43s. Time for last 1,000,000: 1s. Last read position: chr5:38,932,995
INFO 2026-06-08 08:53:22 MarkDuplicates Tracking 1222575 as yet unmatched pairs. 62632 records in RAM.
INFO 2026-06-08 08:53:24 MarkDuplicates Read 160,000,000 records. Elapsed time: 00:04:45s. Time for last 1,000,000: 1s. Last read position: chr5:53,078,832
INFO 2026-06-08 08:53:24 MarkDuplicates Tracking 1220121 as yet unmatched pairs. 60155 records in RAM.
INFO 2026-06-08 08:53:26 MarkDuplicates Read 161,000,000 records. Elapsed time: 00:04:47s. Time for last 1,000,000: 1s. Last read position: chr5:62,394,525
INFO 2026-06-08 08:53:26 MarkDuplicates Tracking 1217863 as yet unmatched pairs. 57868 records in RAM.
INFO 2026-06-08 08:53:28 MarkDuplicates Read 162,000,000 records. Elapsed time: 00:04:49s. Time for last 1,000,000: 1s. Last read position: chr5:70,440,797
INFO 2026-06-08 08:53:28 MarkDuplicates Tracking 1216227 as yet unmatched pairs. 56189 records in RAM.
INFO 2026-06-08 08:53:30 MarkDuplicates Read 163,000,000 records. Elapsed time: 00:04:51s. Time for last 1,000,000: 2s. Last read position: chr5:75,342,661
INFO 2026-06-08 08:53:30 MarkDuplicates Tracking 1214067 as yet unmatched pairs. 53993 records in RAM.
INFO 2026-06-08 08:53:32 MarkDuplicates Read 164,000,000 records. Elapsed time: 00:04:54s. Time for last 1,000,000: 2s. Last read position: chr5:82,276,168
INFO 2026-06-08 08:53:32 MarkDuplicates Tracking 1216495 as yet unmatched pairs. 56397 records in RAM.
INFO 2026-06-08 08:53:34 MarkDuplicates Read 165,000,000 records. Elapsed time: 00:04:56s. Time for last 1,000,000: 1s. Last read position: chr5:95,943,033
INFO 2026-06-08 08:53:34 MarkDuplicates Tracking 1209282 as yet unmatched pairs. 49142 records in RAM.
INFO 2026-06-08 08:53:36 MarkDuplicates Read 166,000,000 records. Elapsed time: 00:04:58s. Time for last 1,000,000: 1s. Last read position: chr5:115,212,553
INFO 2026-06-08 08:53:36 MarkDuplicates Tracking 1207026 as yet unmatched pairs. 46860 records in RAM.
INFO 2026-06-08 08:53:38 MarkDuplicates Read 167,000,000 records. Elapsed time: 00:05:00s. Time for last 1,000,000: 1s. Last read position: chr5:132,393,779
INFO 2026-06-08 08:53:38 MarkDuplicates Tracking 1204629 as yet unmatched pairs. 44425 records in RAM.
INFO 2026-06-08 08:53:41 MarkDuplicates Read 168,000,000 records. Elapsed time: 00:05:02s. Time for last 1,000,000: 2s. Last read position: chr5:133,992,953
INFO 2026-06-08 08:53:41 MarkDuplicates Tracking 1201301 as yet unmatched pairs. 41072 records in RAM.
INFO 2026-06-08 08:53:43 MarkDuplicates Read 169,000,000 records. Elapsed time: 00:05:04s. Time for last 1,000,000: 1s. Last read position: chr5:138,157,179
INFO 2026-06-08 08:53:43 MarkDuplicates Tracking 1198815 as yet unmatched pairs. 38562 records in RAM.
INFO 2026-06-08 08:53:45 MarkDuplicates Read 170,000,000 records. Elapsed time: 00:05:06s. Time for last 1,000,000: 1s. Last read position: chr5:140,436,212
INFO 2026-06-08 08:53:45 MarkDuplicates Tracking 1196927 as yet unmatched pairs. 36596 records in RAM.
INFO 2026-06-08 08:53:46 MarkDuplicates Read 171,000,000 records. Elapsed time: 00:05:08s. Time for last 1,000,000: 1s. Last read position: chr5:141,399,930
INFO 2026-06-08 08:53:46 MarkDuplicates Tracking 1193756 as yet unmatched pairs. 33406 records in RAM.
INFO 2026-06-08 08:53:48 MarkDuplicates Read 172,000,000 records. Elapsed time: 00:05:10s. Time for last 1,000,000: 1s. Last read position: chr5:146,463,755
INFO 2026-06-08 08:53:48 MarkDuplicates Tracking 1191598 as yet unmatched pairs. 31238 records in RAM.
INFO 2026-06-08 08:53:50 MarkDuplicates Read 173,000,000 records. Elapsed time: 00:05:12s. Time for last 1,000,000: 1s. Last read position: chr5:150,132,840
INFO 2026-06-08 08:53:50 MarkDuplicates Tracking 1189529 as yet unmatched pairs. 29161 records in RAM.
INFO 2026-06-08 08:53:52 MarkDuplicates Read 174,000,000 records. Elapsed time: 00:05:14s. Time for last 1,000,000: 2s. Last read position: chr5:150,402,563
INFO 2026-06-08 08:53:52 MarkDuplicates Tracking 1240676 as yet unmatched pairs. 80294 records in RAM.
INFO 2026-06-08 08:53:55 MarkDuplicates Read 175,000,000 records. Elapsed time: 00:05:16s. Time for last 1,000,000: 2s. Last read position: chr5:150,405,103
INFO 2026-06-08 08:53:55 MarkDuplicates Tracking 1216319 as yet unmatched pairs. 55923 records in RAM.
INFO 2026-06-08 08:53:57 MarkDuplicates Read 176,000,000 records. Elapsed time: 00:05:18s. Time for last 1,000,000: 1s. Last read position: chr5:150,406,951
INFO 2026-06-08 08:53:57 MarkDuplicates Tracking 1206324 as yet unmatched pairs. 45918 records in RAM.
INFO 2026-06-08 08:53:58 MarkDuplicates Read 177,000,000 records. Elapsed time: 00:05:20s. Time for last 1,000,000: 1s. Last read position: chr5:151,030,653
INFO 2026-06-08 08:53:58 MarkDuplicates Tracking 1178750 as yet unmatched pairs. 18327 records in RAM.
INFO 2026-06-08 08:54:00 MarkDuplicates Read 178,000,000 records. Elapsed time: 00:05:21s. Time for last 1,000,000: 1s. Last read position: chr5:157,086,090
INFO 2026-06-08 08:54:00 MarkDuplicates Tracking 1176020 as yet unmatched pairs. 15576 records in RAM.
INFO 2026-06-08 08:54:01 MarkDuplicates Read 179,000,000 records. Elapsed time: 00:05:23s. Time for last 1,000,000: 1s. Last read position: chr5:171,387,966
INFO 2026-06-08 08:54:01 MarkDuplicates Tracking 1181123 as yet unmatched pairs. 20653 records in RAM.
INFO 2026-06-08 08:54:03 MarkDuplicates Read 180,000,000 records. Elapsed time: 00:05:25s. Time for last 1,000,000: 1s. Last read position: chr5:176,290,139
INFO 2026-06-08 08:54:03 MarkDuplicates Tracking 1170400 as yet unmatched pairs. 9910 records in RAM.
INFO 2026-06-08 08:54:05 MarkDuplicates Read 181,000,000 records. Elapsed time: 00:05:26s. Time for last 1,000,000: 1s. Last read position: chr5:177,536,565
INFO 2026-06-08 08:54:05 MarkDuplicates Tracking 1168212 as yet unmatched pairs. 7705 records in RAM.
INFO 2026-06-08 08:54:06 MarkDuplicates Read 182,000,000 records. Elapsed time: 00:05:28s. Time for last 1,000,000: 1s. Last read position: chr5:179,774,528
INFO 2026-06-08 08:54:06 MarkDuplicates Tracking 1165468 as yet unmatched pairs. 4915 records in RAM.
INFO 2026-06-08 08:54:09 MarkDuplicates Read 183,000,000 records. Elapsed time: 00:05:30s. Time for last 1,000,000: 2s. Last read position: chr5:180,280,440
INFO 2026-06-08 08:54:09 MarkDuplicates Tracking 1162451 as yet unmatched pairs. 1888 records in RAM.
INFO 2026-06-08 08:54:11 MarkDuplicates Read 184,000,000 records. Elapsed time: 00:05:33s. Time for last 1,000,000: 2s. Last read position: chr6:4,031,901
INFO 2026-06-08 08:54:11 MarkDuplicates Tracking 1159565 as yet unmatched pairs. 72523 records in RAM.
INFO 2026-06-08 08:54:13 MarkDuplicates Read 185,000,000 records. Elapsed time: 00:05:34s. Time for last 1,000,000: 1s. Last read position: chr6:7,583,621
INFO 2026-06-08 08:54:13 MarkDuplicates Tracking 1157625 as yet unmatched pairs. 70564 records in RAM.
INFO 2026-06-08 08:54:14 MarkDuplicates Read 186,000,000 records. Elapsed time: 00:05:36s. Time for last 1,000,000: 1s. Last read position: chr6:17,605,872
INFO 2026-06-08 08:54:14 MarkDuplicates Tracking 1154556 as yet unmatched pairs. 67452 records in RAM.
INFO 2026-06-08 08:54:16 MarkDuplicates Read 187,000,000 records. Elapsed time: 00:05:38s. Time for last 1,000,000: 1s. Last read position: chr6:26,272,978
INFO 2026-06-08 08:54:16 MarkDuplicates Tracking 1152054 as yet unmatched pairs. 64916 records in RAM.
INFO 2026-06-08 08:54:18 MarkDuplicates Read 188,000,000 records. Elapsed time: 00:05:39s. Time for last 1,000,000: 1s. Last read position: chr6:29,889,369
INFO 2026-06-08 08:54:18 MarkDuplicates Tracking 1151351 as yet unmatched pairs. 64209 records in RAM.
INFO 2026-06-08 08:54:19 MarkDuplicates Read 189,000,000 records. Elapsed time: 00:05:41s. Time for last 1,000,000: 1s. Last read position: chr6:30,640,588
INFO 2026-06-08 08:54:19 MarkDuplicates Tracking 1147360 as yet unmatched pairs. 60202 records in RAM.
INFO 2026-06-08 08:54:22 MarkDuplicates Read 190,000,000 records. Elapsed time: 00:05:44s. Time for last 1,000,000: 2s. Last read position: chr6:31,271,196
INFO 2026-06-08 08:54:22 MarkDuplicates Tracking 1148092 as yet unmatched pairs. 60921 records in RAM.
INFO 2026-06-08 08:54:24 MarkDuplicates Read 191,000,000 records. Elapsed time: 00:05:46s. Time for last 1,000,000: 2s. Last read position: chr6:31,634,905
INFO 2026-06-08 08:54:24 MarkDuplicates Tracking 1142756 as yet unmatched pairs. 55575 records in RAM.
INFO 2026-06-08 08:54:26 MarkDuplicates Read 192,000,000 records. Elapsed time: 00:05:47s. Time for last 1,000,000: 1s. Last read position: chr6:31,828,569
INFO 2026-06-08 08:54:26 MarkDuplicates Tracking 1140546 as yet unmatched pairs. 53350 records in RAM.
INFO 2026-06-08 08:54:27 MarkDuplicates Read 193,000,000 records. Elapsed time: 00:05:49s. Time for last 1,000,000: 1s. Last read position: chr6:31,992,104
INFO 2026-06-08 08:54:27 MarkDuplicates Tracking 1139216 as yet unmatched pairs. 52003 records in RAM.
INFO 2026-06-08 08:54:29 MarkDuplicates Read 194,000,000 records. Elapsed time: 00:05:51s. Time for last 1,000,000: 1s. Last read position: chr6:32,024,538
INFO 2026-06-08 08:54:29 MarkDuplicates Tracking 1142614 as yet unmatched pairs. 55399 records in RAM.
INFO 2026-06-08 08:54:31 MarkDuplicates Read 195,000,000 records. Elapsed time: 00:05:53s. Time for last 1,000,000: 2s. Last read position: chr6:32,061,559
INFO 2026-06-08 08:54:31 MarkDuplicates Tracking 1135390 as yet unmatched pairs. 48167 records in RAM.
INFO 2026-06-08 08:54:34 MarkDuplicates Read 196,000,000 records. Elapsed time: 00:05:55s. Time for last 1,000,000: 2s. Last read position: chr6:32,443,407
INFO 2026-06-08 08:54:34 MarkDuplicates Tracking 1133975 as yet unmatched pairs. 46729 records in RAM.
INFO 2026-06-08 08:54:36 MarkDuplicates Read 197,000,000 records. Elapsed time: 00:05:57s. Time for last 1,000,000: 1s. Last read position: chr6:32,850,955
INFO 2026-06-08 08:54:36 MarkDuplicates Tracking 1130393 as yet unmatched pairs. 43139 records in RAM.
INFO 2026-06-08 08:54:37 MarkDuplicates Read 198,000,000 records. Elapsed time: 00:05:59s. Time for last 1,000,000: 1s. Last read position: chr6:33,203,097
INFO 2026-06-08 08:54:37 MarkDuplicates Tracking 1127626 as yet unmatched pairs. 40363 records in RAM.
INFO 2026-06-08 08:54:39 MarkDuplicates Read 199,000,000 records. Elapsed time: 00:06:01s. Time for last 1,000,000: 1s. Last read position: chr6:33,437,740
INFO 2026-06-08 08:54:39 MarkDuplicates Tracking 1123756 as yet unmatched pairs. 36471 records in RAM.
INFO 2026-06-08 08:54:41 MarkDuplicates Read 200,000,000 records. Elapsed time: 00:06:02s. Time for last 1,000,000: 1s. Last read position: chr6:36,201,392
INFO 2026-06-08 08:54:41 MarkDuplicates Tracking 1120984 as yet unmatched pairs. 33687 records in RAM.
INFO 2026-06-08 08:54:43 MarkDuplicates Read 201,000,000 records. Elapsed time: 00:06:04s. Time for last 1,000,000: 1s. Last read position: chr6:42,269,200
INFO 2026-06-08 08:54:43 MarkDuplicates Tracking 1118434 as yet unmatched pairs. 31112 records in RAM.
INFO 2026-06-08 08:54:45 MarkDuplicates Read 202,000,000 records. Elapsed time: 00:06:06s. Time for last 1,000,000: 2s. Last read position: chr6:43,621,998
INFO 2026-06-08 08:54:45 MarkDuplicates Tracking 1115589 as yet unmatched pairs. 28251 records in RAM.
INFO 2026-06-08 08:54:48 MarkDuplicates Read 203,000,000 records. Elapsed time: 00:06:09s. Time for last 1,000,000: 2s. Last read position: chr6:52,516,685
INFO 2026-06-08 08:54:48 MarkDuplicates Tracking 1113121 as yet unmatched pairs. 25775 records in RAM.
INFO 2026-06-08 08:54:49 MarkDuplicates Read 204,000,000 records. Elapsed time: 00:06:11s. Time for last 1,000,000: 1s. Last read position: chr6:73,452,003
INFO 2026-06-08 08:54:49 MarkDuplicates Tracking 1111027 as yet unmatched pairs. 23628 records in RAM.
INFO 2026-06-08 08:54:51 MarkDuplicates Read 205,000,000 records. Elapsed time: 00:06:12s. Time for last 1,000,000: 1s. Last read position: chr6:87,257,212
INFO 2026-06-08 08:54:51 MarkDuplicates Tracking 1108742 as yet unmatched pairs. 21314 records in RAM.
INFO 2026-06-08 08:54:53 MarkDuplicates Read 206,000,000 records. Elapsed time: 00:06:14s. Time for last 1,000,000: 1s. Last read position: chr6:106,519,662
INFO 2026-06-08 08:54:53 MarkDuplicates Tracking 1106340 as yet unmatched pairs. 18885 records in RAM.
INFO 2026-06-08 08:54:54 MarkDuplicates Read 207,000,000 records. Elapsed time: 00:06:16s. Time for last 1,000,000: 1s. Last read position: chr6:112,253,989
INFO 2026-06-08 08:54:54 MarkDuplicates Tracking 1104132 as yet unmatched pairs. 16663 records in RAM.
INFO 2026-06-08 08:54:56 MarkDuplicates Read 208,000,000 records. Elapsed time: 00:06:17s. Time for last 1,000,000: 1s. Last read position: chr6:129,366,234
INFO 2026-06-08 08:54:56 MarkDuplicates Tracking 1101479 as yet unmatched pairs. 13986 records in RAM.
INFO 2026-06-08 08:54:58 MarkDuplicates Read 209,000,000 records. Elapsed time: 00:06:19s. Time for last 1,000,000: 1s. Last read position: chr6:138,280,028
INFO 2026-06-08 08:54:58 MarkDuplicates Tracking 1098642 as yet unmatched pairs. 11128 records in RAM.
INFO 2026-06-08 08:55:00 MarkDuplicates Read 210,000,000 records. Elapsed time: 00:06:21s. Time for last 1,000,000: 2s. Last read position: chr6:148,544,516
INFO 2026-06-08 08:55:00 MarkDuplicates Tracking 1096165 as yet unmatched pairs. 8630 records in RAM.
INFO 2026-06-08 08:55:01 MarkDuplicates Read 211,000,000 records. Elapsed time: 00:06:23s. Time for last 1,000,000: 1s. Last read position: chr6:156,778,111
INFO 2026-06-08 08:55:01 MarkDuplicates Tracking 1093648 as yet unmatched pairs. 6105 records in RAM.
INFO 2026-06-08 08:55:03 MarkDuplicates Read 212,000,000 records. Elapsed time: 00:06:25s. Time for last 1,000,000: 1s. Last read position: chr6:159,692,764
INFO 2026-06-08 08:55:03 MarkDuplicates Tracking 1091835 as yet unmatched pairs. 4254 records in RAM.
INFO 2026-06-08 08:55:05 MarkDuplicates Read 213,000,000 records. Elapsed time: 00:06:26s. Time for last 1,000,000: 1s. Last read position: chr6:169,232,977
INFO 2026-06-08 08:55:05 MarkDuplicates Tracking 1088802 as yet unmatched pairs. 1195 records in RAM.
INFO 2026-06-08 08:55:07 MarkDuplicates Read 214,000,000 records. Elapsed time: 00:06:29s. Time for last 1,000,000: 2s. Last read position: chr7:2,239,418
INFO 2026-06-08 08:55:07 MarkDuplicates Tracking 1085618 as yet unmatched pairs. 71538 records in RAM.
INFO 2026-06-08 08:55:09 MarkDuplicates Read 215,000,000 records. Elapsed time: 00:06:31s. Time for last 1,000,000: 1s. Last read position: chr7:5,313,775
INFO 2026-06-08 08:55:09 MarkDuplicates Tracking 1082855 as yet unmatched pairs. 68753 records in RAM.
INFO 2026-06-08 08:55:11 MarkDuplicates Read 216,000,000 records. Elapsed time: 00:06:32s. Time for last 1,000,000: 1s. Last read position: chr7:5,528,406
INFO 2026-06-08 08:55:11 MarkDuplicates Tracking 1085067 as yet unmatched pairs. 70948 records in RAM.
INFO 2026-06-08 08:55:13 MarkDuplicates Read 217,000,000 records. Elapsed time: 00:06:34s. Time for last 1,000,000: 1s. Last read position: chr7:6,474,218
INFO 2026-06-08 08:55:13 MarkDuplicates Tracking 1077120 as yet unmatched pairs. 62986 records in RAM.
INFO 2026-06-08 08:55:15 MarkDuplicates Read 218,000,000 records. Elapsed time: 00:06:36s. Time for last 1,000,000: 2s. Last read position: chr7:23,254,207
INFO 2026-06-08 08:55:15 MarkDuplicates Tracking 1075000 as yet unmatched pairs. 60848 records in RAM.
INFO 2026-06-08 08:55:18 MarkDuplicates Read 219,000,000 records. Elapsed time: 00:06:39s. Time for last 1,000,000: 3s. Last read position: chr7:30,911,893
INFO 2026-06-08 08:55:18 MarkDuplicates Tracking 1071907 as yet unmatched pairs. 57738 records in RAM.
INFO 2026-06-08 08:55:20 MarkDuplicates Read 220,000,000 records. Elapsed time: 00:06:41s. Time for last 1,000,000: 1s. Last read position: chr7:43,866,736
INFO 2026-06-08 08:55:20 MarkDuplicates Tracking 1070116 as yet unmatched pairs. 55904 records in RAM.
INFO 2026-06-08 08:55:21 MarkDuplicates Read 221,000,000 records. Elapsed time: 00:06:43s. Time for last 1,000,000: 1s. Last read position: chr7:44,707,608
INFO 2026-06-08 08:55:21 MarkDuplicates Tracking 1066841 as yet unmatched pairs. 52625 records in RAM.
INFO 2026-06-08 08:55:23 MarkDuplicates Read 222,000,000 records. Elapsed time: 00:06:45s. Time for last 1,000,000: 1s. Last read position: chr7:55,201,278
INFO 2026-06-08 08:55:23 MarkDuplicates Tracking 1064069 as yet unmatched pairs. 49842 records in RAM.
INFO 2026-06-08 08:55:25 MarkDuplicates Read 223,000,000 records. Elapsed time: 00:06:46s. Time for last 1,000,000: 1s. Last read position: chr7:70,790,393
INFO 2026-06-08 08:55:25 MarkDuplicates Tracking 1061757 as yet unmatched pairs. 47501 records in RAM.
INFO 2026-06-08 08:55:26 MarkDuplicates Read 224,000,000 records. Elapsed time: 00:06:48s. Time for last 1,000,000: 1s. Last read position: chr7:73,607,597
INFO 2026-06-08 08:55:26 MarkDuplicates Tracking 1060189 as yet unmatched pairs. 45909 records in RAM.
INFO 2026-06-08 08:55:28 MarkDuplicates Read 225,000,000 records. Elapsed time: 00:06:50s. Time for last 1,000,000: 1s. Last read position: chr7:75,109,012
INFO 2026-06-08 08:55:28 MarkDuplicates Tracking 1057961 as yet unmatched pairs. 43673 records in RAM.
INFO 2026-06-08 08:55:30 MarkDuplicates Read 226,000,000 records. Elapsed time: 00:06:51s. Time for last 1,000,000: 1s. Last read position: chr7:76,060,403
INFO 2026-06-08 08:55:30 MarkDuplicates Tracking 1057007 as yet unmatched pairs. 42709 records in RAM.
INFO 2026-06-08 08:55:33 MarkDuplicates Read 227,000,000 records. Elapsed time: 00:06:54s. Time for last 1,000,000: 2s. Last read position: chr7:83,134,883
INFO 2026-06-08 08:55:33 MarkDuplicates Tracking 1053590 as yet unmatched pairs. 39278 records in RAM.
INFO 2026-06-08 08:55:35 MarkDuplicates Read 228,000,000 records. Elapsed time: 00:06:56s. Time for last 1,000,000: 2s. Last read position: chr7:92,562,258
INFO 2026-06-08 08:55:35 MarkDuplicates Tracking 1051506 as yet unmatched pairs. 37178 records in RAM.
INFO 2026-06-08 08:55:37 MarkDuplicates Read 229,000,000 records. Elapsed time: 00:06:58s. Time for last 1,000,000: 1s. Last read position: chr7:94,427,281
INFO 2026-06-08 08:55:37 MarkDuplicates Tracking 1049860 as yet unmatched pairs. 35500 records in RAM.
INFO 2026-06-08 08:55:39 MarkDuplicates Read 230,000,000 records. Elapsed time: 00:07:00s. Time for last 1,000,000: 1s. Last read position: chr7:99,389,877
INFO 2026-06-08 08:55:39 MarkDuplicates Tracking 1047086 as yet unmatched pairs. 32720 records in RAM.
INFO 2026-06-08 08:55:40 MarkDuplicates Read 231,000,000 records. Elapsed time: 00:07:02s. Time for last 1,000,000: 1s. Last read position: chr7:100,198,889
INFO 2026-06-08 08:55:40 MarkDuplicates Tracking 1043789 as yet unmatched pairs. 29413 records in RAM.
INFO 2026-06-08 08:55:42 MarkDuplicates Read 232,000,000 records. Elapsed time: 00:07:04s. Time for last 1,000,000: 1s. Last read position: chr7:100,803,361
INFO 2026-06-08 08:55:42 MarkDuplicates Tracking 1041479 as yet unmatched pairs. 27091 records in RAM.
INFO 2026-06-08 08:55:44 MarkDuplicates Read 233,000,000 records. Elapsed time: 00:07:05s. Time for last 1,000,000: 1s. Last read position: chr7:102,353,299
INFO 2026-06-08 08:55:44 MarkDuplicates Tracking 1039036 as yet unmatched pairs. 24637 records in RAM.
INFO 2026-06-08 08:55:45 MarkDuplicates Read 234,000,000 records. Elapsed time: 00:07:07s. Time for last 1,000,000: 1s. Last read position: chr7:103,347,736
INFO 2026-06-08 08:55:45 MarkDuplicates Tracking 1037736 as yet unmatched pairs. 23326 records in RAM.
INFO 2026-06-08 08:55:47 MarkDuplicates Read 235,000,000 records. Elapsed time: 00:07:09s. Time for last 1,000,000: 1s. Last read position: chr7:112,286,898
INFO 2026-06-08 08:55:47 MarkDuplicates Tracking 1035052 as yet unmatched pairs. 20634 records in RAM.
INFO 2026-06-08 08:55:50 MarkDuplicates Read 236,000,000 records. Elapsed time: 00:07:12s. Time for last 1,000,000: 3s. Last read position: chr7:127,707,609
INFO 2026-06-08 08:55:50 MarkDuplicates Tracking 1037810 as yet unmatched pairs. 23351 records in RAM.
INFO 2026-06-08 08:55:52 MarkDuplicates Read 237,000,000 records. Elapsed time: 00:07:14s. Time for last 1,000,000: 1s. Last read position: chr7:130,497,977
INFO 2026-06-08 08:55:52 MarkDuplicates Tracking 1030631 as yet unmatched pairs. 16157 records in RAM.
INFO 2026-06-08 08:55:54 MarkDuplicates Read 238,000,000 records. Elapsed time: 00:07:15s. Time for last 1,000,000: 1s. Last read position: chr7:138,504,392
INFO 2026-06-08 08:55:54 MarkDuplicates Tracking 1027965 as yet unmatched pairs. 13456 records in RAM.
INFO 2026-06-08 08:55:55 MarkDuplicates Read 239,000,000 records. Elapsed time: 00:07:17s. Time for last 1,000,000: 1s. Last read position: chr7:140,808,938
INFO 2026-06-08 08:55:55 MarkDuplicates Tracking 1025817 as yet unmatched pairs. 11292 records in RAM.
INFO 2026-06-08 08:55:57 MarkDuplicates Read 240,000,000 records. Elapsed time: 00:07:19s. Time for last 1,000,000: 1s. Last read position: chr7:144,269,025
INFO 2026-06-08 08:55:57 MarkDuplicates Tracking 1022903 as yet unmatched pairs. 8369 records in RAM.
INFO 2026-06-08 08:55:59 MarkDuplicates Read 241,000,000 records. Elapsed time: 00:07:20s. Time for last 1,000,000: 1s. Last read position: chr7:150,372,519
INFO 2026-06-08 08:55:59 MarkDuplicates Tracking 1021012 as yet unmatched pairs. 6466 records in RAM.
INFO 2026-06-08 08:56:00 MarkDuplicates Read 242,000,000 records. Elapsed time: 00:07:22s. Time for last 1,000,000: 1s. Last read position: chr7:151,381,877
INFO 2026-06-08 08:56:00 MarkDuplicates Tracking 1017375 as yet unmatched pairs. 2810 records in RAM.
INFO 2026-06-08 08:56:03 MarkDuplicates Read 243,000,000 records. Elapsed time: 00:07:24s. Time for last 1,000,000: 2s. Last read position: chr7:158,799,060
INFO 2026-06-08 08:56:03 MarkDuplicates Tracking 1015423 as yet unmatched pairs. 834 records in RAM.
INFO 2026-06-08 08:56:05 MarkDuplicates Read 244,000,000 records. Elapsed time: 00:07:27s. Time for last 1,000,000: 2s. Last read position: chr8:17,655,969
INFO 2026-06-08 08:56:05 MarkDuplicates Tracking 1012526 as yet unmatched pairs. 64931 records in RAM.
INFO 2026-06-08 08:56:07 MarkDuplicates Read 245,000,000 records. Elapsed time: 00:07:28s. Time for last 1,000,000: 1s. Last read position: chr8:23,200,533
INFO 2026-06-08 08:56:07 MarkDuplicates Tracking 1009571 as yet unmatched pairs. 61954 records in RAM.
INFO 2026-06-08 08:56:09 MarkDuplicates Read 246,000,000 records. Elapsed time: 00:07:30s. Time for last 1,000,000: 1s. Last read position: chr8:30,786,297
INFO 2026-06-08 08:56:09 MarkDuplicates Tracking 1007443 as yet unmatched pairs. 59802 records in RAM.
INFO 2026-06-08 08:56:11 MarkDuplicates Read 247,000,000 records. Elapsed time: 00:07:32s. Time for last 1,000,000: 1s. Last read position: chr8:38,414,172
INFO 2026-06-08 08:56:11 MarkDuplicates Tracking 1005939 as yet unmatched pairs. 58285 records in RAM.
INFO 2026-06-08 08:57:18 MarkDuplicates Read 248,000,000 records. Elapsed time: 00:08:39s. Time for last 1,000,000: 67s. Last read position: chr8:42,308,900
INFO 2026-06-08 08:57:18 MarkDuplicates Tracking 1002550 as yet unmatched pairs. 54877 records in RAM.
INFO 2026-06-08 08:57:20 MarkDuplicates Read 249,000,000 records. Elapsed time: 00:08:42s. Time for last 1,000,000: 2s. Last read position: chr8:51,319,971
INFO 2026-06-08 08:57:20 MarkDuplicates Tracking 999222 as yet unmatched pairs. 51531 records in RAM.
INFO 2026-06-08 08:57:22 MarkDuplicates Read 250,000,000 records. Elapsed time: 00:08:44s. Time for last 1,000,000: 1s. Last read position: chr8:61,517,538
INFO 2026-06-08 08:57:22 MarkDuplicates Tracking 997427 as yet unmatched pairs. 49705 records in RAM.
INFO 2026-06-08 08:57:24 MarkDuplicates Read 251,000,000 records. Elapsed time: 00:08:45s. Time for last 1,000,000: 1s. Last read position: chr8:70,127,011
INFO 2026-06-08 08:57:24 MarkDuplicates Tracking 995436 as yet unmatched pairs. 47699 records in RAM.
INFO 2026-06-08 08:57:27 MarkDuplicates Read 252,000,000 records. Elapsed time: 00:08:48s. Time for last 1,000,000: 2s. Last read position: chr8:80,064,570
INFO 2026-06-08 08:57:27 MarkDuplicates Tracking 993080 as yet unmatched pairs. 45319 records in RAM.
INFO 2026-06-08 08:57:28 MarkDuplicates Read 253,000,000 records. Elapsed time: 00:08:50s. Time for last 1,000,000: 1s. Last read position: chr8:94,662,317
INFO 2026-06-08 08:57:28 MarkDuplicates Tracking 990365 as yet unmatched pairs. 42589 records in RAM.
INFO 2026-06-08 08:57:30 MarkDuplicates Read 254,000,000 records. Elapsed time: 00:08:52s. Time for last 1,000,000: 1s. Last read position: chr8:100,258,758
INFO 2026-06-08 08:57:30 MarkDuplicates Tracking 988090 as yet unmatched pairs. 40282 records in RAM.
INFO 2026-06-08 08:57:32 MarkDuplicates Read 255,000,000 records. Elapsed time: 00:08:54s. Time for last 1,000,000: 1s. Last read position: chr8:100,721,483
INFO 2026-06-08 08:57:32 MarkDuplicates Tracking 992666 as yet unmatched pairs. 44841 records in RAM.
INFO 2026-06-08 08:57:34 MarkDuplicates Read 256,000,000 records. Elapsed time: 00:08:55s. Time for last 1,000,000: 1s. Last read position: chr8:108,229,193
INFO 2026-06-08 08:57:34 MarkDuplicates Tracking 984169 as yet unmatched pairs. 36328 records in RAM.
INFO 2026-06-08 08:57:36 MarkDuplicates Read 257,000,000 records. Elapsed time: 00:08:57s. Time for last 1,000,000: 1s. Last read position: chr8:119,580,116
INFO 2026-06-08 08:57:36 MarkDuplicates Tracking 980686 as yet unmatched pairs. 32798 records in RAM.
INFO 2026-06-08 08:57:38 MarkDuplicates Read 258,000,000 records. Elapsed time: 00:08:59s. Time for last 1,000,000: 1s. Last read position: chr8:125,063,464
INFO 2026-06-08 08:57:38 MarkDuplicates Tracking 978069 as yet unmatched pairs. 30163 records in RAM.
INFO 2026-06-08 08:57:39 MarkDuplicates Read 259,000,000 records. Elapsed time: 00:09:01s. Time for last 1,000,000: 1s. Last read position: chr8:138,751,481
INFO 2026-06-08 08:57:39 MarkDuplicates Tracking 975438 as yet unmatched pairs. 27480 records in RAM.
INFO 2026-06-08 08:57:41 MarkDuplicates Read 260,000,000 records. Elapsed time: 00:09:03s. Time for last 1,000,000: 1s. Last read position: chr8:143,275,025
INFO 2026-06-08 08:57:41 MarkDuplicates Tracking 972951 as yet unmatched pairs. 24964 records in RAM.
INFO 2026-06-08 08:57:43 MarkDuplicates Read 261,000,000 records. Elapsed time: 00:09:05s. Time for last 1,000,000: 1s. Last read position: chr8:143,727,524
INFO 2026-06-08 08:57:43 MarkDuplicates Tracking 970324 as yet unmatched pairs. 22318 records in RAM.
INFO 2026-06-08 08:57:45 MarkDuplicates Read 262,000,000 records. Elapsed time: 00:09:06s. Time for last 1,000,000: 1s. Last read position: chr8:143,859,793
INFO 2026-06-08 08:57:45 MarkDuplicates Tracking 967154 as yet unmatched pairs. 19132 records in RAM.
INFO 2026-06-08 08:57:46 MarkDuplicates Read 263,000,000 records. Elapsed time: 00:09:08s. Time for last 1,000,000: 1s. Last read position: chr8:143,864,807
INFO 2026-06-08 08:57:46 MarkDuplicates Tracking 965796 as yet unmatched pairs. 17763 records in RAM.
INFO 2026-06-08 08:57:48 MarkDuplicates Read 264,000,000 records. Elapsed time: 00:09:09s. Time for last 1,000,000: 1s. Last read position: chr8:143,919,279
INFO 2026-06-08 08:57:48 MarkDuplicates Tracking 967158 as yet unmatched pairs. 19114 records in RAM.
INFO 2026-06-08 08:57:50 MarkDuplicates Read 265,000,000 records. Elapsed time: 00:09:11s. Time for last 1,000,000: 1s. Last read position: chr8:143,927,803
INFO 2026-06-08 08:57:50 MarkDuplicates Tracking 960790 as yet unmatched pairs. 12716 records in RAM.
INFO 2026-06-08 08:57:52 MarkDuplicates Read 266,000,000 records. Elapsed time: 00:09:13s. Time for last 1,000,000: 1s. Last read position: chr8:144,046,596
INFO 2026-06-08 08:57:52 MarkDuplicates Tracking 956103 as yet unmatched pairs. 8014 records in RAM.
INFO 2026-06-08 08:57:54 MarkDuplicates Read 267,000,000 records. Elapsed time: 00:09:16s. Time for last 1,000,000: 2s. Last read position: chr8:144,359,907
INFO 2026-06-08 08:57:54 MarkDuplicates Tracking 954365 as yet unmatched pairs. 6252 records in RAM.
INFO 2026-06-08 08:57:56 MarkDuplicates Read 268,000,000 records. Elapsed time: 00:09:18s. Time for last 1,000,000: 2s. Last read position: chr8:144,722,346
INFO 2026-06-08 08:57:56 MarkDuplicates Tracking 949271 as yet unmatched pairs. 1133 records in RAM.
INFO 2026-06-08 08:57:59 MarkDuplicates Read 269,000,000 records. Elapsed time: 00:09:20s. Time for last 1,000,000: 2s. Last read position: chr9:5,629,338
INFO 2026-06-08 08:57:59 MarkDuplicates Tracking 946951 as yet unmatched pairs. 55865 records in RAM.
INFO 2026-06-08 08:58:00 MarkDuplicates Read 270,000,000 records. Elapsed time: 00:09:22s. Time for last 1,000,000: 1s. Last read position: chr9:19,376,535
INFO 2026-06-08 08:58:00 MarkDuplicates Tracking 945330 as yet unmatched pairs. 54180 records in RAM.
INFO 2026-06-08 08:58:02 MarkDuplicates Read 271,000,000 records. Elapsed time: 00:09:24s. Time for last 1,000,000: 1s. Last read position: chr9:34,241,449
INFO 2026-06-08 08:58:02 MarkDuplicates Tracking 942209 as yet unmatched pairs. 51046 records in RAM.
INFO 2026-06-08 08:58:04 MarkDuplicates Read 272,000,000 records. Elapsed time: 00:09:25s. Time for last 1,000,000: 1s. Last read position: chr9:35,708,448
INFO 2026-06-08 08:58:04 MarkDuplicates Tracking 940040 as yet unmatched pairs. 48856 records in RAM.
INFO 2026-06-08 08:58:06 MarkDuplicates Read 273,000,000 records. Elapsed time: 00:09:27s. Time for last 1,000,000: 1s. Last read position: chr9:64,002,525
INFO 2026-06-08 08:58:06 MarkDuplicates Tracking 936547 as yet unmatched pairs. 45301 records in RAM.
INFO 2026-06-08 08:58:07 MarkDuplicates Read 274,000,000 records. Elapsed time: 00:09:29s. Time for last 1,000,000: 1s. Last read position: chr9:83,971,334
INFO 2026-06-08 08:58:07 MarkDuplicates Tracking 935880 as yet unmatched pairs. 44629 records in RAM.
INFO 2026-06-08 08:58:09 MarkDuplicates Read 275,000,000 records. Elapsed time: 00:09:31s. Time for last 1,000,000: 1s. Last read position: chr9:92,299,952
INFO 2026-06-08 08:58:09 MarkDuplicates Tracking 931941 as yet unmatched pairs. 40657 records in RAM.
INFO 2026-06-08 08:58:11 MarkDuplicates Read 276,000,000 records. Elapsed time: 00:09:33s. Time for last 1,000,000: 2s. Last read position: chr9:97,602,515
INFO 2026-06-08 08:58:11 MarkDuplicates Tracking 929450 as yet unmatched pairs. 38154 records in RAM.
INFO 2026-06-08 08:58:13 MarkDuplicates Read 277,000,000 records. Elapsed time: 00:09:35s. Time for last 1,000,000: 1s. Last read position: chr9:106,928,846
INFO 2026-06-08 08:58:13 MarkDuplicates Tracking 926943 as yet unmatched pairs. 35643 records in RAM.
INFO 2026-06-08 08:58:16 MarkDuplicates Read 278,000,000 records. Elapsed time: 00:09:37s. Time for last 1,000,000: 2s. Last read position: chr9:113,203,023
INFO 2026-06-08 08:58:16 MarkDuplicates Tracking 924665 as yet unmatched pairs. 33335 records in RAM.
INFO 2026-06-08 08:58:18 MarkDuplicates Read 279,000,000 records. Elapsed time: 00:09:39s. Time for last 1,000,000: 1s. Last read position: chr9:115,064,716
INFO 2026-06-08 08:58:18 MarkDuplicates Tracking 922474 as yet unmatched pairs. 31133 records in RAM.
INFO 2026-06-08 08:58:20 MarkDuplicates Read 280,000,000 records. Elapsed time: 00:09:41s. Time for last 1,000,000: 2s. Last read position: chr9:121,331,387
INFO 2026-06-08 08:58:20 MarkDuplicates Tracking 920149 as yet unmatched pairs. 28794 records in RAM.
INFO 2026-06-08 08:58:22 MarkDuplicates Read 281,000,000 records. Elapsed time: 00:09:43s. Time for last 1,000,000: 1s. Last read position: chr9:125,585,621
INFO 2026-06-08 08:58:22 MarkDuplicates Tracking 916890 as yet unmatched pairs. 25513 records in RAM.
INFO 2026-06-08 08:58:24 MarkDuplicates Read 282,000,000 records. Elapsed time: 00:09:45s. Time for last 1,000,000: 1s. Last read position: chr9:128,166,294
INFO 2026-06-08 08:58:24 MarkDuplicates Tracking 914246 as yet unmatched pairs. 22837 records in RAM.
INFO 2026-06-08 08:58:25 MarkDuplicates Read 283,000,000 records. Elapsed time: 00:09:47s. Time for last 1,000,000: 1s. Last read position: chr9:128,806,010
INFO 2026-06-08 08:58:25 MarkDuplicates Tracking 911184 as yet unmatched pairs. 19764 records in RAM.
INFO 2026-06-08 08:58:27 MarkDuplicates Read 284,000,000 records. Elapsed time: 00:09:49s. Time for last 1,000,000: 1s. Last read position: chr9:130,872,946
INFO 2026-06-08 08:58:27 MarkDuplicates Tracking 909401 as yet unmatched pairs. 17959 records in RAM.
INFO 2026-06-08 08:58:29 MarkDuplicates Read 285,000,000 records. Elapsed time: 00:09:51s. Time for last 1,000,000: 2s. Last read position: chr9:131,650,899
INFO 2026-06-08 08:58:29 MarkDuplicates Tracking 906292 as yet unmatched pairs. 14832 records in RAM.
INFO 2026-06-08 08:58:32 MarkDuplicates Read 286,000,000 records. Elapsed time: 00:09:53s. Time for last 1,000,000: 2s. Last read position: chr9:134,027,043
INFO 2026-06-08 08:58:32 MarkDuplicates Tracking 902921 as yet unmatched pairs. 11439 records in RAM.
INFO 2026-06-08 08:58:34 MarkDuplicates Read 287,000,000 records. Elapsed time: 00:09:55s. Time for last 1,000,000: 1s. Last read position: chr9:136,414,601
INFO 2026-06-08 08:58:34 MarkDuplicates Tracking 900194 as yet unmatched pairs. 8695 records in RAM.
INFO 2026-06-08 08:58:35 MarkDuplicates Read 288,000,000 records. Elapsed time: 00:09:57s. Time for last 1,000,000: 1s. Last read position: chr9:136,846,755
INFO 2026-06-08 08:58:35 MarkDuplicates Tracking 897126 as yet unmatched pairs. 5611 records in RAM.
INFO 2026-06-08 08:58:37 MarkDuplicates Read 289,000,000 records. Elapsed time: 00:09:59s. Time for last 1,000,000: 1s. Last read position: chr9:137,214,820
INFO 2026-06-08 08:58:37 MarkDuplicates Tracking 893788 as yet unmatched pairs. 2266 records in RAM.
INFO 2026-06-08 08:58:40 MarkDuplicates Read 290,000,000 records. Elapsed time: 00:10:01s. Time for last 1,000,000: 2s. Last read position: chr10:3,108,734
INFO 2026-06-08 08:58:40 MarkDuplicates Tracking 890892 as yet unmatched pairs. 46768 records in RAM.
INFO 2026-06-08 08:58:41 MarkDuplicates Read 291,000,000 records. Elapsed time: 00:10:03s. Time for last 1,000,000: 1s. Last read position: chr10:8,058,317
INFO 2026-06-08 08:58:41 MarkDuplicates Tracking 889080 as yet unmatched pairs. 44940 records in RAM.
INFO 2026-06-08 08:58:44 MarkDuplicates Read 292,000,000 records. Elapsed time: 00:10:06s. Time for last 1,000,000: 2s. Last read position: chr10:17,229,464
INFO 2026-06-08 08:58:44 MarkDuplicates Tracking 887967 as yet unmatched pairs. 43793 records in RAM.
INFO 2026-06-08 08:58:46 MarkDuplicates Read 293,000,000 records. Elapsed time: 00:10:08s. Time for last 1,000,000: 1s. Last read position: chr10:24,585,809
INFO 2026-06-08 08:58:46 MarkDuplicates Tracking 883471 as yet unmatched pairs. 39293 records in RAM.
INFO 2026-06-08 08:58:48 MarkDuplicates Read 294,000,000 records. Elapsed time: 00:10:09s. Time for last 1,000,000: 1s. Last read position: chr10:31,839,638
INFO 2026-06-08 08:58:48 MarkDuplicates Tracking 881237 as yet unmatched pairs. 37036 records in RAM.
INFO 2026-06-08 08:58:50 MarkDuplicates Read 295,000,000 records. Elapsed time: 00:10:11s. Time for last 1,000,000: 1s. Last read position: chr10:35,071,303
INFO 2026-06-08 08:58:50 MarkDuplicates Tracking 878597 as yet unmatched pairs. 34377 records in RAM.
INFO 2026-06-08 08:58:51 MarkDuplicates Read 296,000,000 records. Elapsed time: 00:10:13s. Time for last 1,000,000: 1s. Last read position: chr10:43,183,340
INFO 2026-06-08 08:58:51 MarkDuplicates Tracking 877007 as yet unmatched pairs. 32738 records in RAM.
INFO 2026-06-08 08:58:53 MarkDuplicates Read 297,000,000 records. Elapsed time: 00:10:14s. Time for last 1,000,000: 1s. Last read position: chr10:47,502,113
INFO 2026-06-08 08:58:53 MarkDuplicates Tracking 875423 as yet unmatched pairs. 31145 records in RAM.
INFO 2026-06-08 08:58:55 MarkDuplicates Read 298,000,000 records. Elapsed time: 00:10:17s. Time for last 1,000,000: 2s. Last read position: chr10:60,070,517
INFO 2026-06-08 08:58:55 MarkDuplicates Tracking 872508 as yet unmatched pairs. 28221 records in RAM.
INFO 2026-06-08 08:58:57 MarkDuplicates Read 299,000,000 records. Elapsed time: 00:10:18s. Time for last 1,000,000: 1s. Last read position: chr10:70,816,856
INFO 2026-06-08 08:58:57 MarkDuplicates Tracking 870307 as yet unmatched pairs. 25998 records in RAM.
INFO 2026-06-08 08:58:59 MarkDuplicates Read 300,000,000 records. Elapsed time: 00:10:20s. Time for last 1,000,000: 1s. Last read position: chr10:73,799,120
INFO 2026-06-08 08:58:59 MarkDuplicates Tracking 867627 as yet unmatched pairs. 23304 records in RAM.
INFO 2026-06-08 08:59:00 MarkDuplicates Read 301,000,000 records. Elapsed time: 00:10:22s. Time for last 1,000,000: 1s. Last read position: chr10:79,347,528
INFO 2026-06-08 08:59:00 MarkDuplicates Tracking 865249 as yet unmatched pairs. 20915 records in RAM.
INFO 2026-06-08 08:59:02 MarkDuplicates Read 302,000,000 records. Elapsed time: 00:10:23s. Time for last 1,000,000: 1s. Last read position: chr10:87,952,203
INFO 2026-06-08 08:59:02 MarkDuplicates Tracking 863590 as yet unmatched pairs. 19237 records in RAM.
INFO 2026-06-08 08:59:03 MarkDuplicates Read 303,000,000 records. Elapsed time: 00:10:25s. Time for last 1,000,000: 1s. Last read position: chr10:93,381,287
INFO 2026-06-08 08:59:03 MarkDuplicates Tracking 860945 as yet unmatched pairs. 16574 records in RAM.
INFO 2026-06-08 08:59:05 MarkDuplicates Read 304,000,000 records. Elapsed time: 00:10:26s. Time for last 1,000,000: 1s. Last read position: chr10:98,209,054
INFO 2026-06-08 08:59:05 MarkDuplicates Tracking 858122 as yet unmatched pairs. 13725 records in RAM.
INFO 2026-06-08 08:59:06 MarkDuplicates Read 305,000,000 records. Elapsed time: 00:10:28s. Time for last 1,000,000: 1s. Last read position: chr10:102,108,908
INFO 2026-06-08 08:59:06 MarkDuplicates Tracking 855424 as yet unmatched pairs. 11023 records in RAM.
INFO 2026-06-08 08:59:08 MarkDuplicates Read 306,000,000 records. Elapsed time: 00:10:29s. Time for last 1,000,000: 1s. Last read position: chr10:103,449,602
INFO 2026-06-08 08:59:08 MarkDuplicates Tracking 852915 as yet unmatched pairs. 8500 records in RAM.
INFO 2026-06-08 08:59:10 MarkDuplicates Read 307,000,000 records. Elapsed time: 00:10:31s. Time for last 1,000,000: 1s. Last read position: chr10:116,886,371
INFO 2026-06-08 08:59:10 MarkDuplicates Tracking 850827 as yet unmatched pairs. 6390 records in RAM.
INFO 2026-06-08 08:59:11 MarkDuplicates Read 308,000,000 records. Elapsed time: 00:10:33s. Time for last 1,000,000: 1s. Last read position: chr10:122,488,993
INFO 2026-06-08 08:59:11 MarkDuplicates Tracking 848364 as yet unmatched pairs. 3910 records in RAM.
INFO 2026-06-08 08:59:13 MarkDuplicates Read 309,000,000 records. Elapsed time: 00:10:35s. Time for last 1,000,000: 2s. Last read position: chr10:133,283,091
INFO 2026-06-08 08:59:13 MarkDuplicates Tracking 845270 as yet unmatched pairs. 786 records in RAM.
INFO 2026-06-08 08:59:16 MarkDuplicates Read 310,000,000 records. Elapsed time: 00:10:37s. Time for last 1,000,000: 2s. Last read position: chr11:319,900
INFO 2026-06-08 08:59:16 MarkDuplicates Tracking 854027 as yet unmatched pairs. 101719 records in RAM.
INFO 2026-06-08 08:59:18 MarkDuplicates Read 311,000,000 records. Elapsed time: 00:10:39s. Time for last 1,000,000: 1s. Last read position: chr11:706,263
INFO 2026-06-08 08:59:18 MarkDuplicates Tracking 839658 as yet unmatched pairs. 87336 records in RAM.
INFO 2026-06-08 08:59:19 MarkDuplicates Read 312,000,000 records. Elapsed time: 00:10:41s. Time for last 1,000,000: 1s. Last read position: chr11:1,248,746
INFO 2026-06-08 08:59:19 MarkDuplicates Tracking 837149 as yet unmatched pairs. 84817 records in RAM.
INFO 2026-06-08 08:59:21 MarkDuplicates Read 313,000,000 records. Elapsed time: 00:10:42s. Time for last 1,000,000: 1s. Last read position: chr11:2,396,860
INFO 2026-06-08 08:59:21 MarkDuplicates Tracking 834935 as yet unmatched pairs. 82595 records in RAM.
INFO 2026-06-08 08:59:22 MarkDuplicates Read 314,000,000 records. Elapsed time: 00:10:44s. Time for last 1,000,000: 1s. Last read position: chr11:6,559,223
INFO 2026-06-08 08:59:22 MarkDuplicates Tracking 831356 as yet unmatched pairs. 78999 records in RAM.
INFO 2026-06-08 08:59:24 MarkDuplicates Read 315,000,000 records. Elapsed time: 00:10:46s. Time for last 1,000,000: 1s. Last read position: chr11:9,429,176
INFO 2026-06-08 08:59:24 MarkDuplicates Tracking 828920 as yet unmatched pairs. 76560 records in RAM.
INFO 2026-06-08 08:59:27 MarkDuplicates Read 316,000,000 records. Elapsed time: 00:10:49s. Time for last 1,000,000: 2s. Last read position: chr11:16,789,158
INFO 2026-06-08 08:59:27 MarkDuplicates Tracking 826320 as yet unmatched pairs. 73946 records in RAM.
INFO 2026-06-08 08:59:29 MarkDuplicates Read 317,000,000 records. Elapsed time: 00:10:50s. Time for last 1,000,000: 1s. Last read position: chr11:33,351,755
INFO 2026-06-08 08:59:29 MarkDuplicates Tracking 824438 as yet unmatched pairs. 72060 records in RAM.
INFO 2026-06-08 08:59:31 MarkDuplicates Read 318,000,000 records. Elapsed time: 00:10:52s. Time for last 1,000,000: 1s. Last read position: chr11:44,107,873
INFO 2026-06-08 08:59:31 MarkDuplicates Tracking 821789 as yet unmatched pairs. 69391 records in RAM.
INFO 2026-06-08 08:59:32 MarkDuplicates Read 319,000,000 records. Elapsed time: 00:10:54s. Time for last 1,000,000: 1s. Last read position: chr11:46,876,812
INFO 2026-06-08 08:59:32 MarkDuplicates Tracking 818803 as yet unmatched pairs. 66403 records in RAM.
INFO 2026-06-08 08:59:34 MarkDuplicates Read 320,000,000 records. Elapsed time: 00:10:55s. Time for last 1,000,000: 1s. Last read position: chr11:57,312,960
INFO 2026-06-08 08:59:34 MarkDuplicates Tracking 817145 as yet unmatched pairs. 64726 records in RAM.
INFO 2026-06-08 08:59:36 MarkDuplicates Read 321,000,000 records. Elapsed time: 00:10:57s. Time for last 1,000,000: 1s. Last read position: chr11:58,528,127
INFO 2026-06-08 08:59:36 MarkDuplicates Tracking 814030 as yet unmatched pairs. 61606 records in RAM.
INFO 2026-06-08 08:59:37 MarkDuplicates Read 322,000,000 records. Elapsed time: 00:10:59s. Time for last 1,000,000: 1s. Last read position: chr11:61,132,301
INFO 2026-06-08 08:59:37 MarkDuplicates Tracking 811610 as yet unmatched pairs. 59162 records in RAM.
INFO 2026-06-08 08:59:39 MarkDuplicates Read 323,000,000 records. Elapsed time: 00:11:00s. Time for last 1,000,000: 1s. Last read position: chr11:62,516,610
INFO 2026-06-08 08:59:39 MarkDuplicates Tracking 809154 as yet unmatched pairs. 56679 records in RAM.
INFO 2026-06-08 08:59:41 MarkDuplicates Read 324,000,000 records. Elapsed time: 00:11:03s. Time for last 1,000,000: 2s. Last read position: chr11:62,528,214
INFO 2026-06-08 08:59:41 MarkDuplicates Tracking 807887 as yet unmatched pairs. 55406 records in RAM.
INFO 2026-06-08 08:59:43 MarkDuplicates Read 325,000,000 records. Elapsed time: 00:11:05s. Time for last 1,000,000: 1s. Last read position: chr11:62,628,988
INFO 2026-06-08 08:59:43 MarkDuplicates Tracking 804678 as yet unmatched pairs. 52186 records in RAM.
INFO 2026-06-08 08:59:45 MarkDuplicates Read 326,000,000 records. Elapsed time: 00:11:06s. Time for last 1,000,000: 1s. Last read position: chr11:63,902,687
INFO 2026-06-08 08:59:45 MarkDuplicates Tracking 802028 as yet unmatched pairs. 49514 records in RAM.
INFO 2026-06-08 08:59:47 MarkDuplicates Read 327,000,000 records. Elapsed time: 00:11:08s. Time for last 1,000,000: 1s. Last read position: chr11:64,765,468
INFO 2026-06-08 08:59:47 MarkDuplicates Tracking 799410 as yet unmatched pairs. 46882 records in RAM.
INFO 2026-06-08 08:59:48 MarkDuplicates Read 328,000,000 records. Elapsed time: 00:11:10s. Time for last 1,000,000: 1s. Last read position: chr11:65,186,312
INFO 2026-06-08 08:59:48 MarkDuplicates Tracking 796305 as yet unmatched pairs. 43775 records in RAM.
INFO 2026-06-08 08:59:50 MarkDuplicates Read 329,000,000 records. Elapsed time: 00:11:12s. Time for last 1,000,000: 1s. Last read position: chr11:65,617,962
INFO 2026-06-08 08:59:50 MarkDuplicates Tracking 792911 as yet unmatched pairs. 40309 records in RAM.
INFO 2026-06-08 08:59:53 MarkDuplicates Read 330,000,000 records. Elapsed time: 00:11:14s. Time for last 1,000,000: 2s. Last read position: chr11:65,965,371
INFO 2026-06-08 08:59:53 MarkDuplicates Tracking 789196 as yet unmatched pairs. 36589 records in RAM.
INFO 2026-06-08 08:59:54 MarkDuplicates Read 331,000,000 records. Elapsed time: 00:11:16s. Time for last 1,000,000: 1s. Last read position: chr11:66,704,727
INFO 2026-06-08 08:59:54 MarkDuplicates Tracking 786224 as yet unmatched pairs. 33608 records in RAM.
INFO 2026-06-08 08:59:56 MarkDuplicates Read 332,000,000 records. Elapsed time: 00:11:18s. Time for last 1,000,000: 1s. Last read position: chr11:67,500,316
INFO 2026-06-08 08:59:56 MarkDuplicates Tracking 783221 as yet unmatched pairs. 30584 records in RAM.
INFO 2026-06-08 08:59:58 MarkDuplicates Read 333,000,000 records. Elapsed time: 00:11:19s. Time for last 1,000,000: 1s. Last read position: chr11:69,647,999
INFO 2026-06-08 08:59:58 MarkDuplicates Tracking 781525 as yet unmatched pairs. 28868 records in RAM.
INFO 2026-06-08 09:00:00 MarkDuplicates Read 334,000,000 records. Elapsed time: 00:11:21s. Time for last 1,000,000: 1s. Last read position: chr11:72,015,587
INFO 2026-06-08 09:00:00 MarkDuplicates Tracking 778807 as yet unmatched pairs. 26133 records in RAM.
INFO 2026-06-08 09:00:01 MarkDuplicates Read 335,000,000 records. Elapsed time: 00:11:23s. Time for last 1,000,000: 1s. Last read position: chr11:73,716,259
INFO 2026-06-08 09:00:01 MarkDuplicates Tracking 775550 as yet unmatched pairs. 22868 records in RAM.
INFO 2026-06-08 09:00:03 MarkDuplicates Read 336,000,000 records. Elapsed time: 00:11:25s. Time for last 1,000,000: 1s. Last read position: chr11:77,174,904
INFO 2026-06-08 09:00:03 MarkDuplicates Tracking 772046 as yet unmatched pairs. 19360 records in RAM.
INFO 2026-06-08 09:00:05 MarkDuplicates Read 337,000,000 records. Elapsed time: 00:11:27s. Time for last 1,000,000: 2s. Last read position: chr11:88,337,509
INFO 2026-06-08 09:00:05 MarkDuplicates Tracking 770178 as yet unmatched pairs. 17476 records in RAM.
INFO 2026-06-08 09:00:08 MarkDuplicates Read 338,000,000 records. Elapsed time: 00:11:29s. Time for last 1,000,000: 2s. Last read position: chr11:104,947,158
INFO 2026-06-08 09:00:08 MarkDuplicates Tracking 767344 as yet unmatched pairs. 14619 records in RAM.
INFO 2026-06-08 09:00:09 MarkDuplicates Read 339,000,000 records. Elapsed time: 00:11:31s. Time for last 1,000,000: 1s. Last read position: chr11:114,440,705
INFO 2026-06-08 09:00:09 MarkDuplicates Tracking 764970 as yet unmatched pairs. 12245 records in RAM.
INFO 2026-06-08 09:00:11 MarkDuplicates Read 340,000,000 records. Elapsed time: 00:11:33s. Time for last 1,000,000: 1s. Last read position: chr11:118,504,152
INFO 2026-06-08 09:00:11 MarkDuplicates Tracking 762337 as yet unmatched pairs. 9591 records in RAM.
INFO 2026-06-08 09:00:13 MarkDuplicates Read 341,000,000 records. Elapsed time: 00:11:34s. Time for last 1,000,000: 1s. Last read position: chr11:119,055,556
INFO 2026-06-08 09:00:13 MarkDuplicates Tracking 761414 as yet unmatched pairs. 8651 records in RAM.
INFO 2026-06-08 09:00:14 MarkDuplicates Read 342,000,000 records. Elapsed time: 00:11:36s. Time for last 1,000,000: 1s. Last read position: chr11:123,060,142
INFO 2026-06-08 09:00:14 MarkDuplicates Tracking 759419 as yet unmatched pairs. 6647 records in RAM.
INFO 2026-06-08 09:00:16 MarkDuplicates Read 343,000,000 records. Elapsed time: 00:11:38s. Time for last 1,000,000: 1s. Last read position: chr11:128,980,661
INFO 2026-06-08 09:00:16 MarkDuplicates Tracking 754588 as yet unmatched pairs. 1808 records in RAM.
INFO 2026-06-08 09:00:18 MarkDuplicates Read 344,000,000 records. Elapsed time: 00:11:40s. Time for last 1,000,000: 2s. Last read position: chr12:883,432
INFO 2026-06-08 09:00:18 MarkDuplicates Tracking 752328 as yet unmatched pairs. 80689 records in RAM.
INFO 2026-06-08 09:00:20 MarkDuplicates Read 345,000,000 records. Elapsed time: 00:11:42s. Time for last 1,000,000: 1s. Last read position: chr12:6,232,678
INFO 2026-06-08 09:00:20 MarkDuplicates Tracking 751031 as yet unmatched pairs. 79383 records in RAM.
INFO 2026-06-08 09:00:22 MarkDuplicates Read 346,000,000 records. Elapsed time: 00:11:43s. Time for last 1,000,000: 1s. Last read position: chr12:6,769,948
INFO 2026-06-08 09:00:22 MarkDuplicates Tracking 747074 as yet unmatched pairs. 75416 records in RAM.
INFO 2026-06-08 09:00:24 MarkDuplicates Read 347,000,000 records. Elapsed time: 00:11:45s. Time for last 1,000,000: 2s. Last read position: chr12:7,080,877
INFO 2026-06-08 09:00:24 MarkDuplicates Tracking 744679 as yet unmatched pairs. 73007 records in RAM.
INFO 2026-06-08 09:00:27 MarkDuplicates Read 348,000,000 records. Elapsed time: 00:11:48s. Time for last 1,000,000: 2s. Last read position: chr12:9,076,913
INFO 2026-06-08 09:00:27 MarkDuplicates Tracking 742974 as yet unmatched pairs. 71298 records in RAM.
INFO 2026-06-08 09:00:29 MarkDuplicates Read 349,000,000 records. Elapsed time: 00:11:50s. Time for last 1,000,000: 1s. Last read position: chr12:12,718,135
INFO 2026-06-08 09:00:29 MarkDuplicates Tracking 739980 as yet unmatched pairs. 68296 records in RAM.
INFO 2026-06-08 09:00:30 MarkDuplicates Read 350,000,000 records. Elapsed time: 00:11:52s. Time for last 1,000,000: 1s. Last read position: chr12:24,901,813
INFO 2026-06-08 09:00:30 MarkDuplicates Tracking 736888 as yet unmatched pairs. 65191 records in RAM.
INFO 2026-06-08 09:00:32 MarkDuplicates Read 351,000,000 records. Elapsed time: 00:11:54s. Time for last 1,000,000: 1s. Last read position: chr12:32,742,732
INFO 2026-06-08 09:00:32 MarkDuplicates Tracking 734544 as yet unmatched pairs. 62842 records in RAM.
INFO 2026-06-08 09:00:34 MarkDuplicates Read 352,000,000 records. Elapsed time: 00:11:55s. Time for last 1,000,000: 1s. Last read position: chr12:47,235,993
INFO 2026-06-08 09:00:34 MarkDuplicates Tracking 732486 as yet unmatched pairs. 60783 records in RAM.
INFO 2026-06-08 09:00:36 MarkDuplicates Read 353,000,000 records. Elapsed time: 00:11:57s. Time for last 1,000,000: 1s. Last read position: chr12:49,038,364
INFO 2026-06-08 09:00:36 MarkDuplicates Tracking 730261 as yet unmatched pairs. 58552 records in RAM.
INFO 2026-06-08 09:00:37 MarkDuplicates Read 354,000,000 records. Elapsed time: 00:11:59s. Time for last 1,000,000: 1s. Last read position: chr12:49,519,118
INFO 2026-06-08 09:00:37 MarkDuplicates Tracking 727281 as yet unmatched pairs. 55569 records in RAM.
INFO 2026-06-08 09:00:40 MarkDuplicates Read 355,000,000 records. Elapsed time: 00:12:01s. Time for last 1,000,000: 2s. Last read position: chr12:51,299,247
INFO 2026-06-08 09:00:40 MarkDuplicates Tracking 725027 as yet unmatched pairs. 53308 records in RAM.
INFO 2026-06-08 09:00:42 MarkDuplicates Read 356,000,000 records. Elapsed time: 00:12:03s. Time for last 1,000,000: 1s. Last read position: chr12:53,279,793
INFO 2026-06-08 09:00:42 MarkDuplicates Tracking 722108 as yet unmatched pairs. 50386 records in RAM.
INFO 2026-06-08 09:00:44 MarkDuplicates Read 357,000,000 records. Elapsed time: 00:12:05s. Time for last 1,000,000: 1s. Last read position: chr12:54,252,181
INFO 2026-06-08 09:00:44 MarkDuplicates Tracking 719939 as yet unmatched pairs. 48214 records in RAM.
INFO 2026-06-08 09:00:45 MarkDuplicates Read 358,000,000 records. Elapsed time: 00:12:07s. Time for last 1,000,000: 1s. Last read position: chr12:55,992,113
INFO 2026-06-08 09:00:45 MarkDuplicates Tracking 717515 as yet unmatched pairs. 45786 records in RAM.
INFO 2026-06-08 09:00:47 MarkDuplicates Read 359,000,000 records. Elapsed time: 00:12:08s. Time for last 1,000,000: 1s. Last read position: chr12:56,318,413
INFO 2026-06-08 09:00:47 MarkDuplicates Tracking 714907 as yet unmatched pairs. 43178 records in RAM.
INFO 2026-06-08 09:00:49 MarkDuplicates Read 360,000,000 records. Elapsed time: 00:12:10s. Time for last 1,000,000: 1s. Last read position: chr12:56,721,107
INFO 2026-06-08 09:00:49 MarkDuplicates Tracking 713392 as yet unmatched pairs. 41652 records in RAM.
INFO 2026-06-08 09:00:50 MarkDuplicates Read 361,000,000 records. Elapsed time: 00:12:12s. Time for last 1,000,000: 1s. Last read position: chr12:57,173,812
INFO 2026-06-08 09:00:50 MarkDuplicates Tracking 711021 as yet unmatched pairs. 39273 records in RAM.
INFO 2026-06-08 09:00:52 MarkDuplicates Read 362,000,000 records. Elapsed time: 00:12:13s. Time for last 1,000,000: 1s. Last read position: chr12:57,471,142
INFO 2026-06-08 09:00:52 MarkDuplicates Tracking 707128 as yet unmatched pairs. 35373 records in RAM.
INFO 2026-06-08 09:00:54 MarkDuplicates Read 363,000,000 records. Elapsed time: 00:12:15s. Time for last 1,000,000: 2s. Last read position: chr12:62,508,451
INFO 2026-06-08 09:00:54 MarkDuplicates Tracking 705070 as yet unmatched pairs. 33291 records in RAM.
INFO 2026-06-08 09:00:56 MarkDuplicates Read 364,000,000 records. Elapsed time: 00:12:18s. Time for last 1,000,000: 2s. Last read position: chr12:69,589,526
INFO 2026-06-08 09:00:56 MarkDuplicates Tracking 702506 as yet unmatched pairs. 30714 records in RAM.
INFO 2026-06-08 09:00:58 MarkDuplicates Read 365,000,000 records. Elapsed time: 00:12:20s. Time for last 1,000,000: 1s. Last read position: chr12:91,151,694
INFO 2026-06-08 09:00:58 MarkDuplicates Tracking 702599 as yet unmatched pairs. 30802 records in RAM.
INFO 2026-06-08 09:01:00 MarkDuplicates Read 366,000,000 records. Elapsed time: 00:12:22s. Time for last 1,000,000: 1s. Last read position: chr12:98,595,740
INFO 2026-06-08 09:01:00 MarkDuplicates Tracking 698327 as yet unmatched pairs. 26521 records in RAM.
INFO 2026-06-08 09:01:02 MarkDuplicates Read 367,000,000 records. Elapsed time: 00:12:24s. Time for last 1,000,000: 1s. Last read position: chr12:105,058,113
INFO 2026-06-08 09:01:02 MarkDuplicates Tracking 695348 as yet unmatched pairs. 23531 records in RAM.
INFO 2026-06-08 09:01:04 MarkDuplicates Read 368,000,000 records. Elapsed time: 00:12:26s. Time for last 1,000,000: 1s. Last read position: chr12:109,939,203
INFO 2026-06-08 09:01:04 MarkDuplicates Tracking 692945 as yet unmatched pairs. 21122 records in RAM.
INFO 2026-06-08 09:01:07 MarkDuplicates Read 369,000,000 records. Elapsed time: 00:12:28s. Time for last 1,000,000: 2s. Last read position: chr12:112,200,684
INFO 2026-06-08 09:01:07 MarkDuplicates Tracking 690248 as yet unmatched pairs. 18417 records in RAM.
INFO 2026-06-08 09:01:09 MarkDuplicates Read 370,000,000 records. Elapsed time: 00:12:30s. Time for last 1,000,000: 1s. Last read position: chr12:113,273,254
INFO 2026-06-08 09:01:09 MarkDuplicates Tracking 688417 as yet unmatched pairs. 16583 records in RAM.
INFO 2026-06-08 09:01:10 MarkDuplicates Read 371,000,000 records. Elapsed time: 00:12:32s. Time for last 1,000,000: 1s. Last read position: chr12:120,142,683
INFO 2026-06-08 09:01:10 MarkDuplicates Tracking 684918 as yet unmatched pairs. 13056 records in RAM.
INFO 2026-06-08 09:01:12 MarkDuplicates Read 372,000,000 records. Elapsed time: 00:12:34s. Time for last 1,000,000: 1s. Last read position: chr12:121,513,273
INFO 2026-06-08 09:01:12 MarkDuplicates Tracking 682157 as yet unmatched pairs. 10285 records in RAM.
INFO 2026-06-08 09:01:14 MarkDuplicates Read 373,000,000 records. Elapsed time: 00:12:36s. Time for last 1,000,000: 1s. Last read position: chr12:123,267,226
INFO 2026-06-08 09:01:14 MarkDuplicates Tracking 679563 as yet unmatched pairs. 7667 records in RAM.
INFO 2026-06-08 09:01:16 MarkDuplicates Read 374,000,000 records. Elapsed time: 00:12:37s. Time for last 1,000,000: 1s. Last read position: chr12:124,912,978
INFO 2026-06-08 09:01:16 MarkDuplicates Tracking 677039 as yet unmatched pairs. 5137 records in RAM.
INFO 2026-06-08 09:01:18 MarkDuplicates Read 375,000,000 records. Elapsed time: 00:12:39s. Time for last 1,000,000: 1s. Last read position: chr12:132,632,346
INFO 2026-06-08 09:01:18 MarkDuplicates Tracking 673638 as yet unmatched pairs. 1732 records in RAM.
INFO 2026-06-08 09:01:20 MarkDuplicates Read 376,000,000 records. Elapsed time: 00:12:41s. Time for last 1,000,000: 2s. Last read position: chr13:20,082,896
INFO 2026-06-08 09:01:20 MarkDuplicates Tracking 672362 as yet unmatched pairs. 19535 records in RAM.
INFO 2026-06-08 09:01:22 MarkDuplicates Read 377,000,000 records. Elapsed time: 00:12:43s. Time for last 1,000,000: 2s. Last read position: chr13:30,463,228
INFO 2026-06-08 09:01:22 MarkDuplicates Tracking 669563 as yet unmatched pairs. 16727 records in RAM.
INFO 2026-06-08 09:01:24 MarkDuplicates Read 378,000,000 records. Elapsed time: 00:12:45s. Time for last 1,000,000: 1s. Last read position: chr13:40,560,016
INFO 2026-06-08 09:01:24 MarkDuplicates Tracking 667145 as yet unmatched pairs. 14297 records in RAM.
INFO 2026-06-08 09:01:27 MarkDuplicates Read 379,000,000 records. Elapsed time: 00:12:48s. Time for last 1,000,000: 2s. Last read position: chr13:48,345,173
INFO 2026-06-08 09:01:27 MarkDuplicates Tracking 664057 as yet unmatched pairs. 11187 records in RAM.
INFO 2026-06-08 09:01:28 MarkDuplicates Read 380,000,000 records. Elapsed time: 00:12:50s. Time for last 1,000,000: 1s. Last read position: chr13:77,180,193
INFO 2026-06-08 09:01:28 MarkDuplicates Tracking 661994 as yet unmatched pairs. 9115 records in RAM.
INFO 2026-06-08 09:01:30 MarkDuplicates Read 381,000,000 records. Elapsed time: 00:12:52s. Time for last 1,000,000: 1s. Last read position: chr13:99,547,020
INFO 2026-06-08 09:01:30 MarkDuplicates Tracking 659496 as yet unmatched pairs. 6605 records in RAM.
INFO 2026-06-08 09:01:32 MarkDuplicates Read 382,000,000 records. Elapsed time: 00:12:53s. Time for last 1,000,000: 1s. Last read position: chr13:110,701,424
INFO 2026-06-08 09:01:32 MarkDuplicates Tracking 656232 as yet unmatched pairs. 3324 records in RAM.
INFO 2026-06-08 09:01:34 MarkDuplicates Read 383,000,000 records. Elapsed time: 00:12:55s. Time for last 1,000,000: 1s. Last read position: chr13:114,325,333
INFO 2026-06-08 09:01:34 MarkDuplicates Tracking 653328 as yet unmatched pairs. 406 records in RAM.
INFO 2026-06-08 09:01:36 MarkDuplicates Read 384,000,000 records. Elapsed time: 00:12:57s. Time for last 1,000,000: 2s. Last read position: chr14:21,495,284
INFO 2026-06-08 09:01:36 MarkDuplicates Tracking 650824 as yet unmatched pairs. 57400 records in RAM.
INFO 2026-06-08 09:01:38 MarkDuplicates Read 385,000,000 records. Elapsed time: 00:12:59s. Time for last 1,000,000: 1s. Last read position: chr14:23,322,046
INFO 2026-06-08 09:01:38 MarkDuplicates Tracking 648324 as yet unmatched pairs. 54878 records in RAM.
INFO 2026-06-08 09:01:40 MarkDuplicates Read 386,000,000 records. Elapsed time: 00:13:01s. Time for last 1,000,000: 1s. Last read position: chr14:24,210,421
INFO 2026-06-08 09:01:40 MarkDuplicates Tracking 645612 as yet unmatched pairs. 52158 records in RAM.
INFO 2026-06-08 09:01:41 MarkDuplicates Read 387,000,000 records. Elapsed time: 00:13:03s. Time for last 1,000,000: 1s. Last read position: chr14:34,603,460
INFO 2026-06-08 09:01:41 MarkDuplicates Tracking 642935 as yet unmatched pairs. 49467 records in RAM.
INFO 2026-06-08 09:01:43 MarkDuplicates Read 388,000,000 records. Elapsed time: 00:13:05s. Time for last 1,000,000: 2s. Last read position: chr14:49,621,448
INFO 2026-06-08 09:01:43 MarkDuplicates Tracking 640594 as yet unmatched pairs. 47092 records in RAM.
INFO 2026-06-08 09:01:46 MarkDuplicates Read 389,000,000 records. Elapsed time: 00:13:08s. Time for last 1,000,000: 2s. Last read position: chr14:55,619,198
INFO 2026-06-08 09:01:46 MarkDuplicates Tracking 638494 as yet unmatched pairs. 44958 records in RAM.
INFO 2026-06-08 09:01:48 MarkDuplicates Read 390,000,000 records. Elapsed time: 00:13:09s. Time for last 1,000,000: 1s. Last read position: chr14:64,162,227
INFO 2026-06-08 09:01:48 MarkDuplicates Tracking 635655 as yet unmatched pairs. 42114 records in RAM.
INFO 2026-06-08 09:01:50 MarkDuplicates Read 391,000,000 records. Elapsed time: 00:13:11s. Time for last 1,000,000: 1s. Last read position: chr14:68,925,662
INFO 2026-06-08 09:01:50 MarkDuplicates Tracking 633466 as yet unmatched pairs. 39910 records in RAM.
INFO 2026-06-08 09:01:51 MarkDuplicates Read 392,000,000 records. Elapsed time: 00:13:13s. Time for last 1,000,000: 1s. Last read position: chr14:74,084,977
INFO 2026-06-08 09:01:51 MarkDuplicates Tracking 630214 as yet unmatched pairs. 36641 records in RAM.
INFO 2026-06-08 09:01:53 MarkDuplicates Read 393,000,000 records. Elapsed time: 00:13:14s. Time for last 1,000,000: 1s. Last read position: chr14:76,635,343
INFO 2026-06-08 09:01:53 MarkDuplicates Tracking 627628 as yet unmatched pairs. 34049 records in RAM.
INFO 2026-06-08 09:01:55 MarkDuplicates Read 394,000,000 records. Elapsed time: 00:13:16s. Time for last 1,000,000: 1s. Last read position: chr14:91,485,720
INFO 2026-06-08 09:01:55 MarkDuplicates Tracking 625237 as yet unmatched pairs. 31641 records in RAM.
INFO 2026-06-08 09:01:56 MarkDuplicates Read 395,000,000 records. Elapsed time: 00:13:18s. Time for last 1,000,000: 1s. Last read position: chr14:95,535,335
INFO 2026-06-08 09:01:56 MarkDuplicates Tracking 622571 as yet unmatched pairs. 28969 records in RAM.
INFO 2026-06-08 09:01:58 MarkDuplicates Read 396,000,000 records. Elapsed time: 00:13:20s. Time for last 1,000,000: 1s. Last read position: chr14:102,039,704
INFO 2026-06-08 09:01:58 MarkDuplicates Tracking 620277 as yet unmatched pairs. 26654 records in RAM.
INFO 2026-06-08 09:02:01 MarkDuplicates Read 397,000,000 records. Elapsed time: 00:13:22s. Time for last 1,000,000: 2s. Last read position: chr14:104,776,699
INFO 2026-06-08 09:02:01 MarkDuplicates Tracking 617476 as yet unmatched pairs. 23841 records in RAM.
INFO 2026-06-08 09:02:02 MarkDuplicates Read 398,000,000 records. Elapsed time: 00:13:24s. Time for last 1,000,000: 1s. Last read position: chr14:105,624,604
INFO 2026-06-08 09:02:02 MarkDuplicates Tracking 618287 as yet unmatched pairs. 24642 records in RAM.
INFO 2026-06-08 09:02:04 MarkDuplicates Read 399,000,000 records. Elapsed time: 00:13:25s. Time for last 1,000,000: 1s. Last read position: chr14:105,643,313
INFO 2026-06-08 09:02:04 MarkDuplicates Tracking 617125 as yet unmatched pairs. 23468 records in RAM.
INFO 2026-06-08 09:02:06 MarkDuplicates Read 400,000,000 records. Elapsed time: 00:13:27s. Time for last 1,000,000: 1s. Last read position: chr14:105,707,373
INFO 2026-06-08 09:02:06 MarkDuplicates Tracking 631025 as yet unmatched pairs. 37352 records in RAM.
INFO 2026-06-08 09:02:07 MarkDuplicates Read 401,000,000 records. Elapsed time: 00:13:29s. Time for last 1,000,000: 1s. Last read position: chr14:105,741,503
INFO 2026-06-08 09:02:07 MarkDuplicates Tracking 642088 as yet unmatched pairs. 48402 records in RAM.
INFO 2026-06-08 09:02:09 MarkDuplicates Read 402,000,000 records. Elapsed time: 00:13:30s. Time for last 1,000,000: 1s. Last read position: chr14:105,741,696
INFO 2026-06-08 09:02:09 MarkDuplicates Tracking 640970 as yet unmatched pairs. 47271 records in RAM.
INFO 2026-06-08 09:02:11 MarkDuplicates Read 403,000,000 records. Elapsed time: 00:13:32s. Time for last 1,000,000: 1s. Last read position: chr14:105,742,163
INFO 2026-06-08 09:02:11 MarkDuplicates Tracking 626876 as yet unmatched pairs. 33169 records in RAM.
INFO 2026-06-08 09:02:12 MarkDuplicates Read 404,000,000 records. Elapsed time: 00:13:34s. Time for last 1,000,000: 1s. Last read position: chr14:105,742,953
INFO 2026-06-08 09:02:12 MarkDuplicates Tracking 620969 as yet unmatched pairs. 27250 records in RAM.
INFO 2026-06-08 09:02:15 MarkDuplicates Read 405,000,000 records. Elapsed time: 00:13:36s. Time for last 1,000,000: 2s. Last read position: chr14:105,770,293
INFO 2026-06-08 09:02:15 MarkDuplicates Tracking 607566 as yet unmatched pairs. 13843 records in RAM.
INFO 2026-06-08 09:02:17 MarkDuplicates Read 406,000,000 records. Elapsed time: 00:13:38s. Time for last 1,000,000: 1s. Last read position: chr14:105,854,478
INFO 2026-06-08 09:02:17 MarkDuplicates Tracking 624633 as yet unmatched pairs. 30900 records in RAM.
INFO 2026-06-08 09:02:18 MarkDuplicates Read 407,000,000 records. Elapsed time: 00:13:40s. Time for last 1,000,000: 1s. Last read position: chr14:105,855,083
INFO 2026-06-08 09:02:18 MarkDuplicates Tracking 622042 as yet unmatched pairs. 28295 records in RAM.
INFO 2026-06-08 09:02:20 MarkDuplicates Read 408,000,000 records. Elapsed time: 00:13:41s. Time for last 1,000,000: 1s. Last read position: chr14:105,855,914
INFO 2026-06-08 09:02:20 MarkDuplicates Tracking 609108 as yet unmatched pairs. 15356 records in RAM.
INFO 2026-06-08 09:02:22 MarkDuplicates Read 409,000,000 records. Elapsed time: 00:13:43s. Time for last 1,000,000: 1s. Last read position: chr15:22,872,883
INFO 2026-06-08 09:02:22 MarkDuplicates Tracking 594021 as yet unmatched pairs. 43984 records in RAM.
INFO 2026-06-08 09:02:23 MarkDuplicates Read 410,000,000 records. Elapsed time: 00:13:45s. Time for last 1,000,000: 1s. Last read position: chr15:31,372,163
INFO 2026-06-08 09:02:23 MarkDuplicates Tracking 591753 as yet unmatched pairs. 41700 records in RAM.
INFO 2026-06-08 09:02:25 MarkDuplicates Read 411,000,000 records. Elapsed time: 00:13:47s. Time for last 1,000,000: 1s. Last read position: chr15:39,591,221
INFO 2026-06-08 09:02:25 MarkDuplicates Tracking 589359 as yet unmatched pairs. 39289 records in RAM.
INFO 2026-06-08 09:02:27 MarkDuplicates Read 412,000,000 records. Elapsed time: 00:13:49s. Time for last 1,000,000: 2s. Last read position: chr15:41,729,291
INFO 2026-06-08 09:02:27 MarkDuplicates Tracking 587045 as yet unmatched pairs. 36959 records in RAM.
INFO 2026-06-08 09:02:29 MarkDuplicates Read 413,000,000 records. Elapsed time: 00:13:51s. Time for last 1,000,000: 1s. Last read position: chr15:43,420,553
INFO 2026-06-08 09:02:29 MarkDuplicates Tracking 584232 as yet unmatched pairs. 34144 records in RAM.
INFO 2026-06-08 09:02:31 MarkDuplicates Read 414,000,000 records. Elapsed time: 00:13:53s. Time for last 1,000,000: 1s. Last read position: chr15:44,537,339
INFO 2026-06-08 09:02:31 MarkDuplicates Tracking 581898 as yet unmatched pairs. 31795 records in RAM.
INFO 2026-06-08 09:02:33 MarkDuplicates Read 415,000,000 records. Elapsed time: 00:13:54s. Time for last 1,000,000: 1s. Last read position: chr15:49,485,947
INFO 2026-06-08 09:02:33 MarkDuplicates Tracking 579431 as yet unmatched pairs. 29312 records in RAM.
INFO 2026-06-08 09:02:35 MarkDuplicates Read 416,000,000 records. Elapsed time: 00:13:56s. Time for last 1,000,000: 1s. Last read position: chr15:57,232,818
INFO 2026-06-08 09:02:35 MarkDuplicates Tracking 579168 as yet unmatched pairs. 29045 records in RAM.
INFO 2026-06-08 09:02:37 MarkDuplicates Read 417,000,000 records. Elapsed time: 00:13:58s. Time for last 1,000,000: 1s. Last read position: chr15:63,042,874
INFO 2026-06-08 09:02:37 MarkDuplicates Tracking 575341 as yet unmatched pairs. 25206 records in RAM.
INFO 2026-06-08 09:02:39 MarkDuplicates Read 418,000,000 records. Elapsed time: 00:14:00s. Time for last 1,000,000: 2s. Last read position: chr15:64,965,443
INFO 2026-06-08 09:02:39 MarkDuplicates Tracking 572952 as yet unmatched pairs. 22812 records in RAM.
INFO 2026-06-08 09:02:41 MarkDuplicates Read 419,000,000 records. Elapsed time: 00:14:02s. Time for last 1,000,000: 1s. Last read position: chr15:69,452,908
INFO 2026-06-08 09:02:41 MarkDuplicates Tracking 571493 as yet unmatched pairs. 21343 records in RAM.
INFO 2026-06-08 09:02:42 MarkDuplicates Read 420,000,000 records. Elapsed time: 00:14:04s. Time for last 1,000,000: 1s. Last read position: chr15:73,702,838
INFO 2026-06-08 09:02:42 MarkDuplicates Tracking 567732 as yet unmatched pairs. 17572 records in RAM.
INFO 2026-06-08 09:02:44 MarkDuplicates Read 421,000,000 records. Elapsed time: 00:14:06s. Time for last 1,000,000: 1s. Last read position: chr15:74,842,294
INFO 2026-06-08 09:02:44 MarkDuplicates Tracking 564029 as yet unmatched pairs. 13860 records in RAM.
INFO 2026-06-08 09:02:46 MarkDuplicates Read 422,000,000 records. Elapsed time: 00:14:07s. Time for last 1,000,000: 1s. Last read position: chr15:77,158,638
INFO 2026-06-08 09:02:46 MarkDuplicates Tracking 561483 as yet unmatched pairs. 11308 records in RAM.
INFO 2026-06-08 09:02:48 MarkDuplicates Read 423,000,000 records. Elapsed time: 00:14:09s. Time for last 1,000,000: 1s. Last read position: chr15:82,434,247
INFO 2026-06-08 09:02:48 MarkDuplicates Tracking 558500 as yet unmatched pairs. 8299 records in RAM.
INFO 2026-06-08 09:02:49 MarkDuplicates Read 424,000,000 records. Elapsed time: 00:14:11s. Time for last 1,000,000: 1s. Last read position: chr15:88,652,219
INFO 2026-06-08 09:02:49 MarkDuplicates Tracking 557279 as yet unmatched pairs. 7068 records in RAM.
INFO 2026-06-08 09:02:51 MarkDuplicates Read 425,000,000 records. Elapsed time: 00:14:13s. Time for last 1,000,000: 1s. Last read position: chr15:90,880,115
INFO 2026-06-08 09:02:51 MarkDuplicates Tracking 553781 as yet unmatched pairs. 3561 records in RAM.
INFO 2026-06-08 09:02:53 MarkDuplicates Read 426,000,000 records. Elapsed time: 00:14:15s. Time for last 1,000,000: 1s. Last read position: chr15:101,177,617
INFO 2026-06-08 09:02:53 MarkDuplicates Tracking 551042 as yet unmatched pairs. 803 records in RAM.
INFO 2026-06-08 09:02:55 MarkDuplicates Read 427,000,000 records. Elapsed time: 00:14:17s. Time for last 1,000,000: 2s. Last read position: chr16:682,192
INFO 2026-06-08 09:02:55 MarkDuplicates Tracking 548062 as yet unmatched pairs. 69092 records in RAM.
INFO 2026-06-08 09:02:57 MarkDuplicates Read 428,000,000 records. Elapsed time: 00:14:18s. Time for last 1,000,000: 1s. Last read position: chr16:1,777,244
INFO 2026-06-08 09:02:57 MarkDuplicates Tracking 545286 as yet unmatched pairs. 66300 records in RAM.
INFO 2026-06-08 09:02:59 MarkDuplicates Read 429,000,000 records. Elapsed time: 00:14:20s. Time for last 1,000,000: 1s. Last read position: chr16:2,234,856
INFO 2026-06-08 09:02:59 MarkDuplicates Tracking 541408 as yet unmatched pairs. 62407 records in RAM.
INFO 2026-06-08 09:03:00 MarkDuplicates Read 430,000,000 records. Elapsed time: 00:14:22s. Time for last 1,000,000: 1s. Last read position: chr16:2,766,038
INFO 2026-06-08 09:03:00 MarkDuplicates Tracking 540184 as yet unmatched pairs. 61181 records in RAM.
INFO 2026-06-08 09:03:02 MarkDuplicates Read 431,000,000 records. Elapsed time: 00:14:24s. Time for last 1,000,000: 1s. Last read position: chr16:3,727,919
INFO 2026-06-08 09:03:02 MarkDuplicates Tracking 536408 as yet unmatched pairs. 57405 records in RAM.
INFO 2026-06-08 09:03:05 MarkDuplicates Read 432,000,000 records. Elapsed time: 00:14:26s. Time for last 1,000,000: 2s. Last read position: chr16:8,859,074
INFO 2026-06-08 09:03:05 MarkDuplicates Tracking 533393 as yet unmatched pairs. 54384 records in RAM.
INFO 2026-06-08 09:03:07 MarkDuplicates Read 433,000,000 records. Elapsed time: 00:14:29s. Time for last 1,000,000: 2s. Last read position: chr16:14,246,625
INFO 2026-06-08 09:03:07 MarkDuplicates Tracking 531042 as yet unmatched pairs. 52031 records in RAM.
INFO 2026-06-08 09:03:09 MarkDuplicates Read 434,000,000 records. Elapsed time: 00:14:30s. Time for last 1,000,000: 1s. Last read position: chr16:15,133,337
INFO 2026-06-08 09:03:09 MarkDuplicates Tracking 529421 as yet unmatched pairs. 50403 records in RAM.
INFO 2026-06-08 09:03:10 MarkDuplicates Read 435,000,000 records. Elapsed time: 00:14:32s. Time for last 1,000,000: 1s. Last read position: chr16:16,357,216
INFO 2026-06-08 09:03:10 MarkDuplicates Tracking 528246 as yet unmatched pairs. 49209 records in RAM.
INFO 2026-06-08 09:03:11 MarkDuplicates Read 436,000,000 records. Elapsed time: 00:14:33s. Time for last 1,000,000: 1s. Last read position: chr16:18,514,411
INFO 2026-06-08 09:03:11 MarkDuplicates Tracking 526885 as yet unmatched pairs. 47836 records in RAM.
INFO 2026-06-08 09:03:13 MarkDuplicates Read 437,000,000 records. Elapsed time: 00:14:34s. Time for last 1,000,000: 1s. Last read position: chr16:21,403,515
INFO 2026-06-08 09:03:13 MarkDuplicates Tracking 524556 as yet unmatched pairs. 45498 records in RAM.
INFO 2026-06-08 09:03:14 MarkDuplicates Read 438,000,000 records. Elapsed time: 00:14:36s. Time for last 1,000,000: 1s. Last read position: chr16:21,837,266
INFO 2026-06-08 09:03:14 MarkDuplicates Tracking 523594 as yet unmatched pairs. 44536 records in RAM.
INFO 2026-06-08 09:03:16 MarkDuplicates Read 439,000,000 records. Elapsed time: 00:14:37s. Time for last 1,000,000: 1s. Last read position: chr16:22,534,493
INFO 2026-06-08 09:03:16 MarkDuplicates Tracking 524355 as yet unmatched pairs. 45285 records in RAM.
INFO 2026-06-08 09:03:17 MarkDuplicates Read 440,000,000 records. Elapsed time: 00:14:39s. Time for last 1,000,000: 1s. Last read position: chr16:27,492,658
INFO 2026-06-08 09:03:17 MarkDuplicates Tracking 521113 as yet unmatched pairs. 42037 records in RAM.
INFO 2026-06-08 09:03:19 MarkDuplicates Read 441,000,000 records. Elapsed time: 00:14:40s. Time for last 1,000,000: 1s. Last read position: chr16:28,866,649
INFO 2026-06-08 09:03:19 MarkDuplicates Tracking 518910 as yet unmatched pairs. 39829 records in RAM.
INFO 2026-06-08 09:03:20 MarkDuplicates Read 442,000,000 records. Elapsed time: 00:14:42s. Time for last 1,000,000: 1s. Last read position: chr16:29,499,373
INFO 2026-06-08 09:03:20 MarkDuplicates Tracking 517835 as yet unmatched pairs. 38745 records in RAM.
INFO 2026-06-08 09:03:22 MarkDuplicates Read 443,000,000 records. Elapsed time: 00:14:43s. Time for last 1,000,000: 1s. Last read position: chr16:30,081,295
INFO 2026-06-08 09:03:22 MarkDuplicates Tracking 514920 as yet unmatched pairs. 35829 records in RAM.
INFO 2026-06-08 09:03:23 MarkDuplicates Read 444,000,000 records. Elapsed time: 00:14:45s. Time for last 1,000,000: 1s. Last read position: chr16:30,517,798
INFO 2026-06-08 09:03:23 MarkDuplicates Tracking 513370 as yet unmatched pairs. 34272 records in RAM.
INFO 2026-06-08 09:03:25 MarkDuplicates Read 445,000,000 records. Elapsed time: 00:14:47s. Time for last 1,000,000: 1s. Last read position: chr16:30,979,678
INFO 2026-06-08 09:03:25 MarkDuplicates Tracking 510082 as yet unmatched pairs. 30982 records in RAM.
INFO 2026-06-08 09:03:27 MarkDuplicates Read 446,000,000 records. Elapsed time: 00:14:48s. Time for last 1,000,000: 1s. Last read position: chr16:31,474,641
INFO 2026-06-08 09:03:27 MarkDuplicates Tracking 507499 as yet unmatched pairs. 28383 records in RAM.
INFO 2026-06-08 09:03:29 MarkDuplicates Read 447,000,000 records. Elapsed time: 00:14:50s. Time for last 1,000,000: 1s. Last read position: chr16:53,453,508
INFO 2026-06-08 09:03:29 MarkDuplicates Tracking 505216 as yet unmatched pairs. 26097 records in RAM.
INFO 2026-06-08 09:03:30 MarkDuplicates Read 448,000,000 records. Elapsed time: 00:14:52s. Time for last 1,000,000: 1s. Last read position: chr16:57,074,640
INFO 2026-06-08 09:03:30 MarkDuplicates Tracking 502625 as yet unmatched pairs. 23493 records in RAM.
INFO 2026-06-08 09:03:32 MarkDuplicates Read 449,000,000 records. Elapsed time: 00:14:53s. Time for last 1,000,000: 1s. Last read position: chr16:67,006,456
INFO 2026-06-08 09:03:32 MarkDuplicates Tracking 499373 as yet unmatched pairs. 20237 records in RAM.
INFO 2026-06-08 09:03:34 MarkDuplicates Read 450,000,000 records. Elapsed time: 00:14:55s. Time for last 1,000,000: 1s. Last read position: chr16:67,957,769
INFO 2026-06-08 09:03:34 MarkDuplicates Tracking 496687 as yet unmatched pairs. 17545 records in RAM.
INFO 2026-06-08 09:03:35 MarkDuplicates Read 451,000,000 records. Elapsed time: 00:14:57s. Time for last 1,000,000: 1s. Last read position: chr16:70,229,783
INFO 2026-06-08 09:03:35 MarkDuplicates Tracking 493804 as yet unmatched pairs. 14649 records in RAM.
INFO 2026-06-08 09:03:37 MarkDuplicates Read 452,000,000 records. Elapsed time: 00:14:59s. Time for last 1,000,000: 1s. Last read position: chr16:72,811,669
INFO 2026-06-08 09:03:37 MarkDuplicates Tracking 491388 as yet unmatched pairs. 12228 records in RAM.
INFO 2026-06-08 09:03:39 MarkDuplicates Read 453,000,000 records. Elapsed time: 00:15:00s. Time for last 1,000,000: 1s. Last read position: chr16:83,808,104
INFO 2026-06-08 09:03:39 MarkDuplicates Tracking 489425 as yet unmatched pairs. 10254 records in RAM.
INFO 2026-06-08 09:03:40 MarkDuplicates Read 454,000,000 records. Elapsed time: 00:15:02s. Time for last 1,000,000: 1s. Last read position: chr16:88,027,594
INFO 2026-06-08 09:03:40 MarkDuplicates Tracking 485578 as yet unmatched pairs. 6396 records in RAM.
INFO 2026-06-08 09:03:43 MarkDuplicates Read 455,000,000 records. Elapsed time: 00:15:04s. Time for last 1,000,000: 2s. Last read position: chr16:88,859,931
INFO 2026-06-08 09:03:43 MarkDuplicates Tracking 482398 as yet unmatched pairs. 3203 records in RAM.
INFO 2026-06-08 09:03:45 MarkDuplicates Read 456,000,000 records. Elapsed time: 00:15:06s. Time for last 1,000,000: 2s. Last read position: chr16:89,935,630
INFO 2026-06-08 09:03:45 MarkDuplicates Tracking 479695 as yet unmatched pairs. 496 records in RAM.
INFO 2026-06-08 09:03:48 MarkDuplicates Read 457,000,000 records. Elapsed time: 00:15:10s. Time for last 1,000,000: 3s. Last read position: chr17:1,662,120
INFO 2026-06-08 09:03:48 MarkDuplicates Tracking 477679 as yet unmatched pairs. 181753 records in RAM.
INFO 2026-06-08 09:03:50 MarkDuplicates Read 458,000,000 records. Elapsed time: 00:15:11s. Time for last 1,000,000: 1s. Last read position: chr17:3,621,347
INFO 2026-06-08 09:03:50 MarkDuplicates Tracking 474086 as yet unmatched pairs. 178157 records in RAM.
INFO 2026-06-08 09:03:52 MarkDuplicates Read 459,000,000 records. Elapsed time: 00:15:13s. Time for last 1,000,000: 1s. Last read position: chr17:4,896,050
INFO 2026-06-08 09:03:52 MarkDuplicates Tracking 471842 as yet unmatched pairs. 175903 records in RAM.
INFO 2026-06-08 09:03:53 MarkDuplicates Read 460,000,000 records. Elapsed time: 00:15:15s. Time for last 1,000,000: 1s. Last read position: chr17:7,220,472
INFO 2026-06-08 09:03:53 MarkDuplicates Tracking 469263 as yet unmatched pairs. 173321 records in RAM.
INFO 2026-06-08 09:03:55 MarkDuplicates Read 461,000,000 records. Elapsed time: 00:15:17s. Time for last 1,000,000: 1s. Last read position: chr17:7,512,806
INFO 2026-06-08 09:03:55 MarkDuplicates Tracking 466727 as yet unmatched pairs. 170783 records in RAM.
INFO 2026-06-08 09:03:57 MarkDuplicates Read 462,000,000 records. Elapsed time: 00:15:18s. Time for last 1,000,000: 1s. Last read position: chr17:7,901,295
INFO 2026-06-08 09:03:57 MarkDuplicates Tracking 463684 as yet unmatched pairs. 167735 records in RAM.
INFO 2026-06-08 09:03:59 MarkDuplicates Read 463,000,000 records. Elapsed time: 00:15:20s. Time for last 1,000,000: 1s. Last read position: chr17:15,259,176
INFO 2026-06-08 09:03:59 MarkDuplicates Tracking 462109 as yet unmatched pairs. 166147 records in RAM.
INFO 2026-06-08 09:04:00 MarkDuplicates Read 464,000,000 records. Elapsed time: 00:15:22s. Time for last 1,000,000: 1s. Last read position: chr17:17,815,909
INFO 2026-06-08 09:04:00 MarkDuplicates Tracking 459075 as yet unmatched pairs. 163111 records in RAM.
INFO 2026-06-08 09:04:02 MarkDuplicates Read 465,000,000 records. Elapsed time: 00:15:24s. Time for last 1,000,000: 1s. Last read position: chr17:20,260,226
INFO 2026-06-08 09:04:02 MarkDuplicates Tracking 455637 as yet unmatched pairs. 159665 records in RAM.
INFO 2026-06-08 09:04:04 MarkDuplicates Read 466,000,000 records. Elapsed time: 00:15:25s. Time for last 1,000,000: 1s. Last read position: chr17:28,621,126
INFO 2026-06-08 09:04:04 MarkDuplicates Tracking 454097 as yet unmatched pairs. 158121 records in RAM.
INFO 2026-06-08 09:04:06 MarkDuplicates Read 467,000,000 records. Elapsed time: 00:15:27s. Time for last 1,000,000: 1s. Last read position: chr17:29,098,150
INFO 2026-06-08 09:04:06 MarkDuplicates Tracking 450737 as yet unmatched pairs. 154761 records in RAM.
INFO 2026-06-08 09:04:08 MarkDuplicates Read 468,000,000 records. Elapsed time: 00:15:29s. Time for last 1,000,000: 2s. Last read position: chr17:31,260,471
INFO 2026-06-08 09:04:08 MarkDuplicates Tracking 448104 as yet unmatched pairs. 152127 records in RAM.
INFO 2026-06-08 09:04:10 MarkDuplicates Read 469,000,000 records. Elapsed time: 00:15:31s. Time for last 1,000,000: 1s. Last read position: chr17:35,353,101
INFO 2026-06-08 09:04:10 MarkDuplicates Tracking 445758 as yet unmatched pairs. 149778 records in RAM.
INFO 2026-06-08 09:04:11 MarkDuplicates Read 470,000,000 records. Elapsed time: 00:15:33s. Time for last 1,000,000: 1s. Last read position: chr17:36,432,022
INFO 2026-06-08 09:04:11 MarkDuplicates Tracking 443698 as yet unmatched pairs. 147718 records in RAM.
INFO 2026-06-08 09:04:14 MarkDuplicates Read 471,000,000 records. Elapsed time: 00:15:35s. Time for last 1,000,000: 2s. Last read position: chr17:38,122,931
INFO 2026-06-08 09:04:14 MarkDuplicates Tracking 442573 as yet unmatched pairs. 146592 records in RAM.
INFO 2026-06-08 09:04:16 MarkDuplicates Read 472,000,000 records. Elapsed time: 00:15:38s. Time for last 1,000,000: 2s. Last read position: chr17:38,574,802
INFO 2026-06-08 09:04:16 MarkDuplicates Tracking 441640 as yet unmatched pairs. 145659 records in RAM.
INFO 2026-06-08 09:04:18 MarkDuplicates Read 473,000,000 records. Elapsed time: 00:15:40s. Time for last 1,000,000: 1s. Last read position: chr17:38,733,369
INFO 2026-06-08 09:04:18 MarkDuplicates Tracking 437924 as yet unmatched pairs. 141941 records in RAM.
INFO 2026-06-08 09:04:20 MarkDuplicates Read 474,000,000 records. Elapsed time: 00:15:41s. Time for last 1,000,000: 1s. Last read position: chr17:38,852,691
INFO 2026-06-08 09:04:20 MarkDuplicates Tracking 434241 as yet unmatched pairs. 138247 records in RAM.
INFO 2026-06-08 09:04:22 MarkDuplicates Read 475,000,000 records. Elapsed time: 00:15:43s. Time for last 1,000,000: 1s. Last read position: chr17:39,451,070
INFO 2026-06-08 09:04:22 MarkDuplicates Tracking 431925 as yet unmatched pairs. 135918 records in RAM.
INFO 2026-06-08 09:04:23 MarkDuplicates Read 476,000,000 records. Elapsed time: 00:15:45s. Time for last 1,000,000: 1s. Last read position: chr17:39,653,732
INFO 2026-06-08 09:04:23 MarkDuplicates Tracking 434042 as yet unmatched pairs. 138030 records in RAM.
INFO 2026-06-08 09:04:25 MarkDuplicates Read 477,000,000 records. Elapsed time: 00:15:47s. Time for last 1,000,000: 1s. Last read position: chr17:39,700,176
INFO 2026-06-08 09:04:25 MarkDuplicates Tracking 457509 as yet unmatched pairs. 161497 records in RAM.
INFO 2026-06-08 09:04:27 MarkDuplicates Read 478,000,000 records. Elapsed time: 00:15:49s. Time for last 1,000,000: 1s. Last read position: chr17:39,707,061
INFO 2026-06-08 09:04:27 MarkDuplicates Tracking 483670 as yet unmatched pairs. 187655 records in RAM.
INFO 2026-06-08 09:04:29 MarkDuplicates Read 479,000,000 records. Elapsed time: 00:15:50s. Time for last 1,000,000: 1s. Last read position: chr17:39,709,332
INFO 2026-06-08 09:04:29 MarkDuplicates Tracking 437589 as yet unmatched pairs. 141574 records in RAM.
INFO 2026-06-08 09:04:31 MarkDuplicates Read 480,000,000 records. Elapsed time: 00:15:53s. Time for last 1,000,000: 2s. Last read position: chr17:39,710,120
INFO 2026-06-08 09:04:31 MarkDuplicates Tracking 479531 as yet unmatched pairs. 183511 records in RAM.
INFO 2026-06-08 09:04:34 MarkDuplicates Read 481,000,000 records. Elapsed time: 00:15:55s. Time for last 1,000,000: 2s. Last read position: chr17:39,710,469
INFO 2026-06-08 09:04:34 MarkDuplicates Tracking 446917 as yet unmatched pairs. 150892 records in RAM.
INFO 2026-06-08 09:04:35 MarkDuplicates Read 482,000,000 records. Elapsed time: 00:15:57s. Time for last 1,000,000: 1s. Last read position: chr17:39,715,295
INFO 2026-06-08 09:04:35 MarkDuplicates Tracking 472003 as yet unmatched pairs. 175978 records in RAM.
INFO 2026-06-08 09:04:37 MarkDuplicates Read 483,000,000 records. Elapsed time: 00:15:59s. Time for last 1,000,000: 1s. Last read position: chr17:39,715,909
INFO 2026-06-08 09:04:37 MarkDuplicates Tracking 459381 as yet unmatched pairs. 163356 records in RAM.
INFO 2026-06-08 09:04:39 MarkDuplicates Read 484,000,000 records. Elapsed time: 00:16:00s. Time for last 1,000,000: 1s. Last read position: chr17:39,716,563
INFO 2026-06-08 09:04:39 MarkDuplicates Tracking 473408 as yet unmatched pairs. 177372 records in RAM.
INFO 2026-06-08 09:04:40 MarkDuplicates Read 485,000,000 records. Elapsed time: 00:16:02s. Time for last 1,000,000: 1s. Last read position: chr17:39,723,311
INFO 2026-06-08 09:04:40 MarkDuplicates Tracking 457569 as yet unmatched pairs. 161527 records in RAM.
INFO 2026-06-08 09:04:42 MarkDuplicates Read 486,000,000 records. Elapsed time: 00:16:04s. Time for last 1,000,000: 1s. Last read position: chr17:39,723,637
INFO 2026-06-08 09:04:42 MarkDuplicates Tracking 423809 as yet unmatched pairs. 127766 records in RAM.
INFO 2026-06-08 09:04:44 MarkDuplicates Read 487,000,000 records. Elapsed time: 00:16:06s. Time for last 1,000,000: 1s. Last read position: chr17:39,725,086
INFO 2026-06-08 09:04:44 MarkDuplicates Tracking 431355 as yet unmatched pairs. 135311 records in RAM.
INFO 2026-06-08 09:04:47 MarkDuplicates Read 488,000,000 records. Elapsed time: 00:16:08s. Time for last 1,000,000: 2s. Last read position: chr17:39,726,577
INFO 2026-06-08 09:04:47 MarkDuplicates Tracking 427068 as yet unmatched pairs. 131023 records in RAM.
INFO 2026-06-08 09:04:48 MarkDuplicates Read 489,000,000 records. Elapsed time: 00:16:10s. Time for last 1,000,000: 1s. Last read position: chr17:39,727,412
INFO 2026-06-08 09:04:48 MarkDuplicates Tracking 420748 as yet unmatched pairs. 124703 records in RAM.
INFO 2026-06-08 09:04:50 MarkDuplicates Read 490,000,000 records. Elapsed time: 00:16:12s. Time for last 1,000,000: 1s. Last read position: chr17:39,727,951
INFO 2026-06-08 09:04:50 MarkDuplicates Tracking 402830 as yet unmatched pairs. 106782 records in RAM.
INFO 2026-06-08 09:04:52 MarkDuplicates Read 491,000,000 records. Elapsed time: 00:16:13s. Time for last 1,000,000: 1s. Last read position: chr17:39,923,261
INFO 2026-06-08 09:04:52 MarkDuplicates Tracking 396009 as yet unmatched pairs. 99960 records in RAM.
INFO 2026-06-08 09:04:53 MarkDuplicates Read 492,000,000 records. Elapsed time: 00:16:15s. Time for last 1,000,000: 1s. Last read position: chr17:40,479,821
INFO 2026-06-08 09:04:53 MarkDuplicates Tracking 385349 as yet unmatched pairs. 89296 records in RAM.
INFO 2026-06-08 09:04:55 MarkDuplicates Read 493,000,000 records. Elapsed time: 00:16:17s. Time for last 1,000,000: 1s. Last read position: chr17:41,884,240
INFO 2026-06-08 09:04:55 MarkDuplicates Tracking 382866 as yet unmatched pairs. 86813 records in RAM.
INFO 2026-06-08 09:04:57 MarkDuplicates Read 494,000,000 records. Elapsed time: 00:16:18s. Time for last 1,000,000: 1s. Last read position: chr17:42,422,781
INFO 2026-06-08 09:04:57 MarkDuplicates Tracking 380065 as yet unmatched pairs. 84011 records in RAM.
INFO 2026-06-08 09:04:59 MarkDuplicates Read 495,000,000 records. Elapsed time: 00:16:20s. Time for last 1,000,000: 1s. Last read position: chr17:43,200,389
INFO 2026-06-08 09:04:59 MarkDuplicates Tracking 377365 as yet unmatched pairs. 81308 records in RAM.
INFO 2026-06-08 09:07:12 MarkDuplicates Read 496,000,000 records. Elapsed time: 00:18:34s. Time for last 1,000,000: 133s. Last read position: chr17:44,397,721
INFO 2026-06-08 09:07:12 MarkDuplicates Tracking 374898 as yet unmatched pairs. 78838 records in RAM.
INFO 2026-06-08 09:07:15 MarkDuplicates Read 497,000,000 records. Elapsed time: 00:18:36s. Time for last 1,000,000: 2s. Last read position: chr17:46,171,307
INFO 2026-06-08 09:07:15 MarkDuplicates Tracking 372524 as yet unmatched pairs. 76460 records in RAM.
INFO 2026-06-08 09:07:16 MarkDuplicates Read 498,000,000 records. Elapsed time: 00:18:38s. Time for last 1,000,000: 1s. Last read position: chr17:47,916,467
INFO 2026-06-08 09:07:16 MarkDuplicates Tracking 370262 as yet unmatched pairs. 74195 records in RAM.
INFO 2026-06-08 09:07:18 MarkDuplicates Read 499,000,000 records. Elapsed time: 00:18:39s. Time for last 1,000,000: 1s. Last read position: chr17:50,136,047
INFO 2026-06-08 09:07:18 MarkDuplicates Tracking 367480 as yet unmatched pairs. 71405 records in RAM.
INFO 2026-06-08 09:07:20 MarkDuplicates Read 500,000,000 records. Elapsed time: 00:18:41s. Time for last 1,000,000: 1s. Last read position: chr17:50,187,519
INFO 2026-06-08 09:07:20 MarkDuplicates Tracking 388751 as yet unmatched pairs. 92674 records in RAM.
INFO 2026-06-08 09:07:21 MarkDuplicates Read 501,000,000 records. Elapsed time: 00:18:43s. Time for last 1,000,000: 1s. Last read position: chr17:50,189,410
INFO 2026-06-08 09:07:21 MarkDuplicates Tracking 378603 as yet unmatched pairs. 82525 records in RAM.
INFO 2026-06-08 09:07:23 MarkDuplicates Read 502,000,000 records. Elapsed time: 00:18:44s. Time for last 1,000,000: 1s. Last read position: chr17:50,190,912
INFO 2026-06-08 09:07:23 MarkDuplicates Tracking 380795 as yet unmatched pairs. 84716 records in RAM.
INFO 2026-06-08 09:07:25 MarkDuplicates Read 503,000,000 records. Elapsed time: 00:18:46s. Time for last 1,000,000: 1s. Last read position: chr17:50,193,990
INFO 2026-06-08 09:07:25 MarkDuplicates Tracking 384340 as yet unmatched pairs. 88261 records in RAM.
INFO 2026-06-08 09:07:27 MarkDuplicates Read 504,000,000 records. Elapsed time: 00:18:48s. Time for last 1,000,000: 1s. Last read position: chr17:50,195,457
INFO 2026-06-08 09:07:27 MarkDuplicates Tracking 371595 as yet unmatched pairs. 75513 records in RAM.
INFO 2026-06-08 09:07:29 MarkDuplicates Read 505,000,000 records. Elapsed time: 00:18:50s. Time for last 1,000,000: 1s. Last read position: chr17:50,197,034
INFO 2026-06-08 09:07:29 MarkDuplicates Tracking 387175 as yet unmatched pairs. 91091 records in RAM.
INFO 2026-06-08 09:07:30 MarkDuplicates Read 506,000,000 records. Elapsed time: 00:18:52s. Time for last 1,000,000: 1s. Last read position: chr17:50,199,925
INFO 2026-06-08 09:07:30 MarkDuplicates Tracking 353058 as yet unmatched pairs. 56973 records in RAM.
INFO 2026-06-08 09:07:32 MarkDuplicates Read 507,000,000 records. Elapsed time: 00:18:53s. Time for last 1,000,000: 1s. Last read position: chr17:56,995,397
INFO 2026-06-08 09:07:32 MarkDuplicates Tracking 344620 as yet unmatched pairs. 48534 records in RAM.
INFO 2026-06-08 09:07:34 MarkDuplicates Read 508,000,000 records. Elapsed time: 00:18:55s. Time for last 1,000,000: 1s. Last read position: chr17:59,661,559
INFO 2026-06-08 09:07:34 MarkDuplicates Tracking 343136 as yet unmatched pairs. 47050 records in RAM.
INFO 2026-06-08 09:07:35 MarkDuplicates Read 509,000,000 records. Elapsed time: 00:18:57s. Time for last 1,000,000: 1s. Last read position: chr17:61,982,443
INFO 2026-06-08 09:07:35 MarkDuplicates Tracking 339453 as yet unmatched pairs. 43367 records in RAM.
INFO 2026-06-08 09:07:37 MarkDuplicates Read 510,000,000 records. Elapsed time: 00:18:59s. Time for last 1,000,000: 2s. Last read position: chr17:63,836,970
INFO 2026-06-08 09:07:37 MarkDuplicates Tracking 336916 as yet unmatched pairs. 40824 records in RAM.
INFO 2026-06-08 09:07:39 MarkDuplicates Read 511,000,000 records. Elapsed time: 00:19:01s. Time for last 1,000,000: 1s. Last read position: chr17:67,109,219
INFO 2026-06-08 09:07:39 MarkDuplicates Tracking 334459 as yet unmatched pairs. 38365 records in RAM.
INFO 2026-06-08 09:07:41 MarkDuplicates Read 512,000,000 records. Elapsed time: 00:19:02s. Time for last 1,000,000: 1s. Last read position: chr17:68,989,852
INFO 2026-06-08 09:07:41 MarkDuplicates Tracking 331860 as yet unmatched pairs. 35762 records in RAM.
INFO 2026-06-08 09:07:43 MarkDuplicates Read 513,000,000 records. Elapsed time: 00:19:04s. Time for last 1,000,000: 2s. Last read position: chr17:74,961,930
INFO 2026-06-08 09:07:43 MarkDuplicates Tracking 329361 as yet unmatched pairs. 33256 records in RAM.
INFO 2026-06-08 09:07:46 MarkDuplicates Read 514,000,000 records. Elapsed time: 00:19:07s. Time for last 1,000,000: 2s. Last read position: chr17:75,617,123
INFO 2026-06-08 09:07:46 MarkDuplicates Tracking 326801 as yet unmatched pairs. 30694 records in RAM.
INFO 2026-06-08 09:07:47 MarkDuplicates Read 515,000,000 records. Elapsed time: 00:19:09s. Time for last 1,000,000: 1s. Last read position: chr17:76,023,564
INFO 2026-06-08 09:07:47 MarkDuplicates Tracking 323381 as yet unmatched pairs. 27270 records in RAM.
INFO 2026-06-08 09:07:49 MarkDuplicates Read 516,000,000 records. Elapsed time: 00:19:10s. Time for last 1,000,000: 1s. Last read position: chr17:77,498,526
INFO 2026-06-08 09:07:49 MarkDuplicates Tracking 320792 as yet unmatched pairs. 24678 records in RAM.
INFO 2026-06-08 09:07:52 MarkDuplicates Read 517,000,000 records. Elapsed time: 00:19:14s. Time for last 1,000,000: 3s. Last read position: chr17:78,972,360
INFO 2026-06-08 09:07:52 MarkDuplicates Tracking 319687 as yet unmatched pairs. 23571 records in RAM.
INFO 2026-06-08 09:07:55 MarkDuplicates Read 518,000,000 records. Elapsed time: 00:19:16s. Time for last 1,000,000: 2s. Last read position: chr17:80,288,314
INFO 2026-06-08 09:07:55 MarkDuplicates Tracking 315354 as yet unmatched pairs. 19230 records in RAM.
INFO 2026-06-08 09:07:57 MarkDuplicates Read 519,000,000 records. Elapsed time: 00:19:18s. Time for last 1,000,000: 1s. Last read position: chr17:80,347,813
INFO 2026-06-08 09:07:57 MarkDuplicates Tracking 314044 as yet unmatched pairs. 17919 records in RAM.
INFO 2026-06-08 09:07:58 MarkDuplicates Read 520,000,000 records. Elapsed time: 00:19:20s. Time for last 1,000,000: 1s. Last read position: chr17:81,283,442
INFO 2026-06-08 09:07:58 MarkDuplicates Tracking 309716 as yet unmatched pairs. 13581 records in RAM.
INFO 2026-06-08 09:08:00 MarkDuplicates Read 521,000,000 records. Elapsed time: 00:19:22s. Time for last 1,000,000: 1s. Last read position: chr17:81,846,597
INFO 2026-06-08 09:08:00 MarkDuplicates Tracking 308404 as yet unmatched pairs. 12268 records in RAM.
INFO 2026-06-08 09:08:02 MarkDuplicates Read 522,000,000 records. Elapsed time: 00:19:23s. Time for last 1,000,000: 1s. Last read position: chr17:82,079,362
INFO 2026-06-08 09:08:02 MarkDuplicates Tracking 304914 as yet unmatched pairs. 8777 records in RAM.
INFO 2026-06-08 09:08:03 MarkDuplicates Read 523,000,000 records. Elapsed time: 00:19:25s. Time for last 1,000,000: 1s. Last read position: chr17:82,089,010
INFO 2026-06-08 09:08:03 MarkDuplicates Tracking 302385 as yet unmatched pairs. 6239 records in RAM.
INFO 2026-06-08 09:08:05 MarkDuplicates Read 524,000,000 records. Elapsed time: 00:19:26s. Time for last 1,000,000: 1s. Last read position: chr17:82,625,413
INFO 2026-06-08 09:08:05 MarkDuplicates Tracking 297822 as yet unmatched pairs. 1669 records in RAM.
INFO 2026-06-08 09:08:07 MarkDuplicates Read 525,000,000 records. Elapsed time: 00:19:28s. Time for last 1,000,000: 1s. Last read position: chr18:9,257,265
INFO 2026-06-08 09:08:07 MarkDuplicates Tracking 294630 as yet unmatched pairs. 11557 records in RAM.
INFO 2026-06-08 09:08:08 MarkDuplicates Read 526,000,000 records. Elapsed time: 00:19:30s. Time for last 1,000,000: 1s. Last read position: chr18:23,899,291
INFO 2026-06-08 09:08:08 MarkDuplicates Tracking 292020 as yet unmatched pairs. 8941 records in RAM.
INFO 2026-06-08 09:08:10 MarkDuplicates Read 527,000,000 records. Elapsed time: 00:19:31s. Time for last 1,000,000: 1s. Last read position: chr18:45,915,463
INFO 2026-06-08 09:08:10 MarkDuplicates Tracking 289885 as yet unmatched pairs. 6786 records in RAM.
INFO 2026-06-08 09:08:12 MarkDuplicates Read 528,000,000 records. Elapsed time: 00:19:33s. Time for last 1,000,000: 1s. Last read position: chr18:56,757,309
INFO 2026-06-08 09:08:12 MarkDuplicates Tracking 287302 as yet unmatched pairs. 4199 records in RAM.
INFO 2026-06-08 09:08:13 MarkDuplicates Read 529,000,000 records. Elapsed time: 00:19:35s. Time for last 1,000,000: 1s. Last read position: chr18:74,632,336
INFO 2026-06-08 09:08:13 MarkDuplicates Tracking 284554 as yet unmatched pairs. 1449 records in RAM.
INFO 2026-06-08 09:08:16 MarkDuplicates Read 530,000,000 records. Elapsed time: 00:19:38s. Time for last 1,000,000: 3s. Last read position: chr19:861,778
INFO 2026-06-08 09:08:16 MarkDuplicates Tracking 282253 as yet unmatched pairs. 113665 records in RAM.
INFO 2026-06-08 09:08:19 MarkDuplicates Read 531,000,000 records. Elapsed time: 00:19:40s. Time for last 1,000,000: 2s. Last read position: chr19:1,226,583
INFO 2026-06-08 09:08:19 MarkDuplicates Tracking 278380 as yet unmatched pairs. 109789 records in RAM.
INFO 2026-06-08 09:08:20 MarkDuplicates Read 532,000,000 records. Elapsed time: 00:19:42s. Time for last 1,000,000: 1s. Last read position: chr19:1,924,169
INFO 2026-06-08 09:08:20 MarkDuplicates Tracking 274944 as yet unmatched pairs. 106351 records in RAM.
INFO 2026-06-08 09:08:22 MarkDuplicates Read 533,000,000 records. Elapsed time: 00:19:43s. Time for last 1,000,000: 1s. Last read position: chr19:3,053,897
INFO 2026-06-08 09:08:22 MarkDuplicates Tracking 273752 as yet unmatched pairs. 105155 records in RAM.
INFO 2026-06-08 09:08:23 MarkDuplicates Read 534,000,000 records. Elapsed time: 00:19:45s. Time for last 1,000,000: 1s. Last read position: chr19:4,363,428
INFO 2026-06-08 09:08:23 MarkDuplicates Tracking 268545 as yet unmatched pairs. 99948 records in RAM.
INFO 2026-06-08 09:08:25 MarkDuplicates Read 535,000,000 records. Elapsed time: 00:19:47s. Time for last 1,000,000: 1s. Last read position: chr19:5,649,091
INFO 2026-06-08 09:08:25 MarkDuplicates Tracking 265452 as yet unmatched pairs. 96853 records in RAM.
INFO 2026-06-08 09:08:27 MarkDuplicates Read 536,000,000 records. Elapsed time: 00:19:48s. Time for last 1,000,000: 1s. Last read position: chr19:6,693,411
INFO 2026-06-08 09:08:27 MarkDuplicates Tracking 263722 as yet unmatched pairs. 95123 records in RAM.
INFO 2026-06-08 09:08:28 MarkDuplicates Read 537,000,000 records. Elapsed time: 00:19:50s. Time for last 1,000,000: 1s. Last read position: chr19:7,610,780
INFO 2026-06-08 09:08:28 MarkDuplicates Tracking 259861 as yet unmatched pairs. 91259 records in RAM.
INFO 2026-06-08 09:08:30 MarkDuplicates Read 538,000,000 records. Elapsed time: 00:19:51s. Time for last 1,000,000: 1s. Last read position: chr19:9,342,858
INFO 2026-06-08 09:08:30 MarkDuplicates Tracking 256914 as yet unmatched pairs. 88305 records in RAM.
INFO 2026-06-08 09:08:32 MarkDuplicates Read 539,000,000 records. Elapsed time: 00:19:53s. Time for last 1,000,000: 1s. Last read position: chr19:10,366,424
INFO 2026-06-08 09:08:32 MarkDuplicates Tracking 254613 as yet unmatched pairs. 86003 records in RAM.
INFO 2026-06-08 09:08:33 MarkDuplicates Read 540,000,000 records. Elapsed time: 00:19:55s. Time for last 1,000,000: 1s. Last read position: chr19:10,994,808
INFO 2026-06-08 09:08:33 MarkDuplicates Tracking 251519 as yet unmatched pairs. 82905 records in RAM.
INFO 2026-06-08 09:08:35 MarkDuplicates Read 541,000,000 records. Elapsed time: 00:19:56s. Time for last 1,000,000: 1s. Last read position: chr19:11,949,266
INFO 2026-06-08 09:08:35 MarkDuplicates Tracking 248727 as yet unmatched pairs. 80110 records in RAM.
INFO 2026-06-08 09:08:36 MarkDuplicates Read 542,000,000 records. Elapsed time: 00:19:58s. Time for last 1,000,000: 1s. Last read position: chr19:12,939,586
INFO 2026-06-08 09:08:36 MarkDuplicates Tracking 246719 as yet unmatched pairs. 78100 records in RAM.
INFO 2026-06-08 09:08:38 MarkDuplicates Read 543,000,000 records. Elapsed time: 00:20:00s. Time for last 1,000,000: 1s. Last read position: chr19:14,090,197
INFO 2026-06-08 09:08:38 MarkDuplicates Tracking 242788 as yet unmatched pairs. 74167 records in RAM.
INFO 2026-06-08 09:08:40 MarkDuplicates Read 544,000,000 records. Elapsed time: 00:20:01s. Time for last 1,000,000: 1s. Last read position: chr19:14,755,017
INFO 2026-06-08 09:08:40 MarkDuplicates Tracking 239962 as yet unmatched pairs. 71334 records in RAM.
INFO 2026-06-08 09:08:42 MarkDuplicates Read 545,000,000 records. Elapsed time: 00:20:03s. Time for last 1,000,000: 2s. Last read position: chr19:15,255,465
INFO 2026-06-08 09:08:42 MarkDuplicates Tracking 238310 as yet unmatched pairs. 69665 records in RAM.
INFO 2026-06-08 09:08:44 MarkDuplicates Read 546,000,000 records. Elapsed time: 00:20:06s. Time for last 1,000,000: 2s. Last read position: chr19:16,326,863
INFO 2026-06-08 09:08:44 MarkDuplicates Tracking 235020 as yet unmatched pairs. 66375 records in RAM.
INFO 2026-06-08 09:08:46 MarkDuplicates Read 547,000,000 records. Elapsed time: 00:20:07s. Time for last 1,000,000: 1s. Last read position: chr19:17,328,193
INFO 2026-06-08 09:08:46 MarkDuplicates Tracking 231432 as yet unmatched pairs. 62783 records in RAM.
INFO 2026-06-08 09:08:47 MarkDuplicates Read 548,000,000 records. Elapsed time: 00:20:09s. Time for last 1,000,000: 1s. Last read position: chr19:18,155,785
INFO 2026-06-08 09:08:47 MarkDuplicates Tracking 228565 as yet unmatched pairs. 59912 records in RAM.
INFO 2026-06-08 09:08:49 MarkDuplicates Read 549,000,000 records. Elapsed time: 00:20:10s. Time for last 1,000,000: 1s. Last read position: chr19:18,777,289
INFO 2026-06-08 09:08:49 MarkDuplicates Tracking 225840 as yet unmatched pairs. 57186 records in RAM.
INFO 2026-06-08 09:08:50 MarkDuplicates Read 550,000,000 records. Elapsed time: 00:20:12s. Time for last 1,000,000: 1s. Last read position: chr19:19,679,726
INFO 2026-06-08 09:08:50 MarkDuplicates Tracking 222331 as yet unmatched pairs. 53676 records in RAM.
INFO 2026-06-08 09:08:52 MarkDuplicates Read 551,000,000 records. Elapsed time: 00:20:14s. Time for last 1,000,000: 1s. Last read position: chr19:35,013,628
INFO 2026-06-08 09:08:52 MarkDuplicates Tracking 220513 as yet unmatched pairs. 51855 records in RAM.
INFO 2026-06-08 09:08:54 MarkDuplicates Read 552,000,000 records. Elapsed time: 00:20:15s. Time for last 1,000,000: 1s. Last read position: chr19:35,784,947
INFO 2026-06-08 09:08:54 MarkDuplicates Tracking 216428 as yet unmatched pairs. 47769 records in RAM.
INFO 2026-06-08 09:08:55 MarkDuplicates Read 553,000,000 records. Elapsed time: 00:20:17s. Time for last 1,000,000: 1s. Last read position: chr19:38,617,796
INFO 2026-06-08 09:08:55 MarkDuplicates Tracking 213655 as yet unmatched pairs. 44995 records in RAM.
INFO 2026-06-08 09:08:57 MarkDuplicates Read 554,000,000 records. Elapsed time: 00:20:19s. Time for last 1,000,000: 1s. Last read position: chr19:39,433,665
INFO 2026-06-08 09:08:57 MarkDuplicates Tracking 214280 as yet unmatched pairs. 45619 records in RAM.
INFO 2026-06-08 09:08:59 MarkDuplicates Read 555,000,000 records. Elapsed time: 00:20:20s. Time for last 1,000,000: 1s. Last read position: chr19:40,378,031
INFO 2026-06-08 09:08:59 MarkDuplicates Tracking 209064 as yet unmatched pairs. 40403 records in RAM.
INFO 2026-06-08 09:09:00 MarkDuplicates Read 556,000,000 records. Elapsed time: 00:20:22s. Time for last 1,000,000: 1s. Last read position: chr19:41,860,268
INFO 2026-06-08 09:09:00 MarkDuplicates Tracking 205536 as yet unmatched pairs. 36874 records in RAM.
INFO 2026-06-08 09:09:02 MarkDuplicates Read 557,000,000 records. Elapsed time: 00:20:23s. Time for last 1,000,000: 1s. Last read position: chr19:42,274,342
INFO 2026-06-08 09:09:02 MarkDuplicates Tracking 204072 as yet unmatched pairs. 35406 records in RAM.
INFO 2026-06-08 09:09:04 MarkDuplicates Read 558,000,000 records. Elapsed time: 00:20:25s. Time for last 1,000,000: 2s. Last read position: chr19:44,101,151
INFO 2026-06-08 09:09:04 MarkDuplicates Tracking 199703 as yet unmatched pairs. 31029 records in RAM.
INFO 2026-06-08 09:09:06 MarkDuplicates Read 559,000,000 records. Elapsed time: 00:20:28s. Time for last 1,000,000: 2s. Last read position: chr19:45,179,378
INFO 2026-06-08 09:09:06 MarkDuplicates Tracking 196488 as yet unmatched pairs. 27814 records in RAM.
INFO 2026-06-08 09:09:08 MarkDuplicates Read 560,000,000 records. Elapsed time: 00:20:29s. Time for last 1,000,000: 1s. Last read position: chr19:46,700,844
INFO 2026-06-08 09:09:08 MarkDuplicates Tracking 193518 as yet unmatched pairs. 24844 records in RAM.
INFO 2026-06-08 09:09:10 MarkDuplicates Read 561,000,000 records. Elapsed time: 00:20:31s. Time for last 1,000,000: 2s. Last read position: chr19:48,133,074
INFO 2026-06-08 09:09:10 MarkDuplicates Tracking 190550 as yet unmatched pairs. 21870 records in RAM.
INFO 2026-06-08 09:09:12 MarkDuplicates Read 562,000,000 records. Elapsed time: 00:20:33s. Time for last 1,000,000: 1s. Last read position: chr19:49,107,662
INFO 2026-06-08 09:09:12 MarkDuplicates Tracking 189080 as yet unmatched pairs. 20400 records in RAM.
INFO 2026-06-08 09:09:13 MarkDuplicates Read 563,000,000 records. Elapsed time: 00:20:35s. Time for last 1,000,000: 1s. Last read position: chr19:49,595,992
INFO 2026-06-08 09:09:13 MarkDuplicates Tracking 184766 as yet unmatched pairs. 16086 records in RAM.
INFO 2026-06-08 09:09:15 MarkDuplicates Read 564,000,000 records. Elapsed time: 00:20:36s. Time for last 1,000,000: 1s. Last read position: chr19:49,909,499
INFO 2026-06-08 09:09:15 MarkDuplicates Tracking 182360 as yet unmatched pairs. 13679 records in RAM.
INFO 2026-06-08 09:09:17 MarkDuplicates Read 565,000,000 records. Elapsed time: 00:20:38s. Time for last 1,000,000: 1s. Last read position: chr19:52,767,461
INFO 2026-06-08 09:09:17 MarkDuplicates Tracking 178986 as yet unmatched pairs. 10305 records in RAM.
INFO 2026-06-08 09:09:18 MarkDuplicates Read 566,000,000 records. Elapsed time: 00:20:40s. Time for last 1,000,000: 1s. Last read position: chr19:54,456,738
INFO 2026-06-08 09:09:18 MarkDuplicates Tracking 178519 as yet unmatched pairs. 9835 records in RAM.
INFO 2026-06-08 09:09:20 MarkDuplicates Read 567,000,000 records. Elapsed time: 00:20:41s. Time for last 1,000,000: 1s. Last read position: chr19:55,491,071
INFO 2026-06-08 09:09:20 MarkDuplicates Tracking 173607 as yet unmatched pairs. 4920 records in RAM.
INFO 2026-06-08 09:09:21 MarkDuplicates Read 568,000,000 records. Elapsed time: 00:20:43s. Time for last 1,000,000: 1s. Last read position: chr19:57,858,866
INFO 2026-06-08 09:09:21 MarkDuplicates Tracking 171454 as yet unmatched pairs. 2761 records in RAM.
INFO 2026-06-08 09:09:24 MarkDuplicates Read 569,000,000 records. Elapsed time: 00:20:45s. Time for last 1,000,000: 2s. Last read position: chr20:1,392,838
INFO 2026-06-08 09:09:24 MarkDuplicates Tracking 168520 as yet unmatched pairs. 41795 records in RAM.
INFO 2026-06-08 09:09:25 MarkDuplicates Read 570,000,000 records. Elapsed time: 00:20:47s. Time for last 1,000,000: 1s. Last read position: chr20:3,889,616
INFO 2026-06-08 09:09:25 MarkDuplicates Tracking 165350 as yet unmatched pairs. 38625 records in RAM.
INFO 2026-06-08 09:09:27 MarkDuplicates Read 571,000,000 records. Elapsed time: 00:20:48s. Time for last 1,000,000: 1s. Last read position: chr20:17,659,132
INFO 2026-06-08 09:09:27 MarkDuplicates Tracking 162300 as yet unmatched pairs. 35572 records in RAM.
INFO 2026-06-08 09:09:28 MarkDuplicates Read 572,000,000 records. Elapsed time: 00:20:50s. Time for last 1,000,000: 1s. Last read position: chr20:24,973,645
INFO 2026-06-08 09:09:28 MarkDuplicates Tracking 160252 as yet unmatched pairs. 33524 records in RAM.
INFO 2026-06-08 09:09:30 MarkDuplicates Read 573,000,000 records. Elapsed time: 00:20:52s. Time for last 1,000,000: 1s. Last read position: chr20:32,447,597
INFO 2026-06-08 09:09:30 MarkDuplicates Tracking 157614 as yet unmatched pairs. 30883 records in RAM.
INFO 2026-06-08 09:09:32 MarkDuplicates Read 574,000,000 records. Elapsed time: 00:20:53s. Time for last 1,000,000: 1s. Last read position: chr20:35,172,131
INFO 2026-06-08 09:09:32 MarkDuplicates Tracking 154390 as yet unmatched pairs. 27655 records in RAM.
INFO 2026-06-08 09:09:33 MarkDuplicates Read 575,000,000 records. Elapsed time: 00:20:55s. Time for last 1,000,000: 1s. Last read position: chr20:36,660,343
INFO 2026-06-08 09:09:33 MarkDuplicates Tracking 151974 as yet unmatched pairs. 25239 records in RAM.
INFO 2026-06-08 09:09:35 MarkDuplicates Read 576,000,000 records. Elapsed time: 00:20:57s. Time for last 1,000,000: 1s. Last read position: chr20:41,028,918
INFO 2026-06-08 09:09:35 MarkDuplicates Tracking 149173 as yet unmatched pairs. 22437 records in RAM.
INFO 2026-06-08 09:09:37 MarkDuplicates Read 577,000,000 records. Elapsed time: 00:20:58s. Time for last 1,000,000: 1s. Last read position: chr20:45,327,359
INFO 2026-06-08 09:09:37 MarkDuplicates Tracking 148845 as yet unmatched pairs. 22108 records in RAM.
INFO 2026-06-08 09:09:38 MarkDuplicates Read 578,000,000 records. Elapsed time: 00:21:00s. Time for last 1,000,000: 1s. Last read position: chr20:47,246,272
INFO 2026-06-08 09:09:38 MarkDuplicates Tracking 144393 as yet unmatched pairs. 17654 records in RAM.
INFO 2026-06-08 09:09:40 MarkDuplicates Read 579,000,000 records. Elapsed time: 00:21:01s. Time for last 1,000,000: 1s. Last read position: chr20:49,905,630
INFO 2026-06-08 09:09:40 MarkDuplicates Tracking 141160 as yet unmatched pairs. 14418 records in RAM.
INFO 2026-06-08 09:09:41 MarkDuplicates Read 580,000,000 records. Elapsed time: 00:21:03s. Time for last 1,000,000: 1s. Last read position: chr20:56,637,867
INFO 2026-06-08 09:09:41 MarkDuplicates Tracking 138218 as yet unmatched pairs. 11473 records in RAM.
INFO 2026-06-08 09:09:43 MarkDuplicates Read 581,000,000 records. Elapsed time: 00:21:04s. Time for last 1,000,000: 1s. Last read position: chr20:61,976,130
INFO 2026-06-08 09:09:43 MarkDuplicates Tracking 135338 as yet unmatched pairs. 8590 records in RAM.
INFO 2026-06-08 09:09:45 MarkDuplicates Read 582,000,000 records. Elapsed time: 00:21:07s. Time for last 1,000,000: 2s. Last read position: chr20:62,813,020
INFO 2026-06-08 09:09:45 MarkDuplicates Tracking 133045 as yet unmatched pairs. 6297 records in RAM.
INFO 2026-06-08 09:09:49 MarkDuplicates Read 583,000,000 records. Elapsed time: 00:21:10s. Time for last 1,000,000: 3s. Last read position: chr20:63,570,793
INFO 2026-06-08 09:09:49 MarkDuplicates Tracking 129462 as yet unmatched pairs. 2714 records in RAM.
INFO 2026-06-08 09:09:51 MarkDuplicates Read 584,000,000 records. Elapsed time: 00:21:12s. Time for last 1,000,000: 1s. Last read position: chr21:6,120,675
INFO 2026-06-08 09:09:51 MarkDuplicates Tracking 126661 as yet unmatched pairs. 23850 records in RAM.
INFO 2026-06-08 09:09:52 MarkDuplicates Read 585,000,000 records. Elapsed time: 00:21:13s. Time for last 1,000,000: 1s. Last read position: chr21:8,217,297
INFO 2026-06-08 09:09:52 MarkDuplicates Tracking 125489 as yet unmatched pairs. 22670 records in RAM.
INFO 2026-06-08 09:09:53 MarkDuplicates Read 586,000,000 records. Elapsed time: 00:21:14s. Time for last 1,000,000: 0s. Last read position: chr21:8,393,359
INFO 2026-06-08 09:09:53 MarkDuplicates Tracking 125387 as yet unmatched pairs. 22568 records in RAM.
INFO 2026-06-08 09:09:54 MarkDuplicates Read 587,000,000 records. Elapsed time: 00:21:15s. Time for last 1,000,000: 1s. Last read position: chr21:8,441,948
INFO 2026-06-08 09:09:54 MarkDuplicates Tracking 124541 as yet unmatched pairs. 21714 records in RAM.
INFO 2026-06-08 09:09:55 MarkDuplicates Read 588,000,000 records. Elapsed time: 00:21:16s. Time for last 1,000,000: 0s. Last read position: chr21:8,444,579
INFO 2026-06-08 09:09:55 MarkDuplicates Tracking 123377 as yet unmatched pairs. 20550 records in RAM.
INFO 2026-06-08 09:09:56 MarkDuplicates Read 589,000,000 records. Elapsed time: 00:21:18s. Time for last 1,000,000: 1s. Last read position: chr21:29,326,514
INFO 2026-06-08 09:09:56 MarkDuplicates Tracking 121815 as yet unmatched pairs. 18984 records in RAM.
INFO 2026-06-08 09:09:58 MarkDuplicates Read 590,000,000 records. Elapsed time: 00:21:19s. Time for last 1,000,000: 1s. Last read position: chr21:33,555,339
INFO 2026-06-08 09:09:58 MarkDuplicates Tracking 119394 as yet unmatched pairs. 16563 records in RAM.
INFO 2026-06-08 09:09:59 MarkDuplicates Read 591,000,000 records. Elapsed time: 00:21:21s. Time for last 1,000,000: 1s. Last read position: chr21:37,172,729
INFO 2026-06-08 09:09:59 MarkDuplicates Tracking 116294 as yet unmatched pairs. 13460 records in RAM.
INFO 2026-06-08 09:10:01 MarkDuplicates Read 592,000,000 records. Elapsed time: 00:21:22s. Time for last 1,000,000: 1s. Last read position: chr21:42,122,988
INFO 2026-06-08 09:10:01 MarkDuplicates Tracking 113214 as yet unmatched pairs. 10380 records in RAM.
INFO 2026-06-08 09:10:03 MarkDuplicates Read 593,000,000 records. Elapsed time: 00:21:24s. Time for last 1,000,000: 2s. Last read position: chr21:44,353,702
INFO 2026-06-08 09:10:03 MarkDuplicates Tracking 110845 as yet unmatched pairs. 8006 records in RAM.
INFO 2026-06-08 09:10:05 MarkDuplicates Read 594,000,000 records. Elapsed time: 00:21:27s. Time for last 1,000,000: 2s. Last read position: chr21:45,989,093
INFO 2026-06-08 09:10:05 MarkDuplicates Tracking 107871 as yet unmatched pairs. 5030 records in RAM.
INFO 2026-06-08 09:10:07 MarkDuplicates Read 595,000,000 records. Elapsed time: 00:21:28s. Time for last 1,000,000: 1s. Last read position: chr21:46,132,508
INFO 2026-06-08 09:10:07 MarkDuplicates Tracking 105264 as yet unmatched pairs. 2422 records in RAM.
INFO 2026-06-08 09:10:09 MarkDuplicates Read 596,000,000 records. Elapsed time: 00:21:31s. Time for last 1,000,000: 2s. Last read position: chr22:17,906,735
INFO 2026-06-08 09:10:09 MarkDuplicates Tracking 102082 as yet unmatched pairs. 49667 records in RAM.
INFO 2026-06-08 09:10:11 MarkDuplicates Read 597,000,000 records. Elapsed time: 00:21:32s. Time for last 1,000,000: 1s. Last read position: chr22:20,709,329
INFO 2026-06-08 09:10:11 MarkDuplicates Tracking 99031 as yet unmatched pairs. 46610 records in RAM.
INFO 2026-06-08 09:10:12 MarkDuplicates Read 598,000,000 records. Elapsed time: 00:21:34s. Time for last 1,000,000: 1s. Last read position: chr22:22,922,749
INFO 2026-06-08 09:10:12 MarkDuplicates Tracking 96589 as yet unmatched pairs. 44166 records in RAM.
INFO 2026-06-08 09:10:14 MarkDuplicates Read 599,000,000 records. Elapsed time: 00:21:35s. Time for last 1,000,000: 1s. Last read position: chr22:24,067,043
INFO 2026-06-08 09:10:14 MarkDuplicates Tracking 93978 as yet unmatched pairs. 41555 records in RAM.
INFO 2026-06-08 09:10:15 MarkDuplicates Read 600,000,000 records. Elapsed time: 00:21:37s. Time for last 1,000,000: 1s. Last read position: chr22:28,795,045
INFO 2026-06-08 09:10:15 MarkDuplicates Tracking 92169 as yet unmatched pairs. 39746 records in RAM.
INFO 2026-06-08 09:10:17 MarkDuplicates Read 601,000,000 records. Elapsed time: 00:21:38s. Time for last 1,000,000: 1s. Last read position: chr22:29,288,748
INFO 2026-06-08 09:10:17 MarkDuplicates Tracking 89388 as yet unmatched pairs. 36959 records in RAM.
INFO 2026-06-08 09:10:18 MarkDuplicates Read 602,000,000 records. Elapsed time: 00:21:40s. Time for last 1,000,000: 1s. Last read position: chr22:30,580,674
INFO 2026-06-08 09:10:18 MarkDuplicates Tracking 85740 as yet unmatched pairs. 33309 records in RAM.
INFO 2026-06-08 09:10:21 MarkDuplicates Read 603,000,000 records. Elapsed time: 00:21:42s. Time for last 1,000,000: 2s. Last read position: chr22:32,802,087
INFO 2026-06-08 09:10:21 MarkDuplicates Tracking 83389 as yet unmatched pairs. 30958 records in RAM.
INFO 2026-06-08 09:10:22 MarkDuplicates Read 604,000,000 records. Elapsed time: 00:21:44s. Time for last 1,000,000: 1s. Last read position: chr22:36,299,006
INFO 2026-06-08 09:10:22 MarkDuplicates Tracking 80744 as yet unmatched pairs. 28313 records in RAM.
INFO 2026-06-08 09:10:24 MarkDuplicates Read 605,000,000 records. Elapsed time: 00:21:45s. Time for last 1,000,000: 1s. Last read position: chr22:37,566,585
INFO 2026-06-08 09:10:24 MarkDuplicates Tracking 77545 as yet unmatched pairs. 25114 records in RAM.
INFO 2026-06-08 09:10:25 MarkDuplicates Read 606,000,000 records. Elapsed time: 00:21:47s. Time for last 1,000,000: 1s. Last read position: chr22:38,486,335
INFO 2026-06-08 09:10:25 MarkDuplicates Tracking 74627 as yet unmatched pairs. 22192 records in RAM.
INFO 2026-06-08 09:10:27 MarkDuplicates Read 607,000,000 records. Elapsed time: 00:21:49s. Time for last 1,000,000: 1s. Last read position: chr22:39,521,967
INFO 2026-06-08 09:10:27 MarkDuplicates Tracking 75502 as yet unmatched pairs. 23065 records in RAM.
INFO 2026-06-08 09:10:29 MarkDuplicates Read 608,000,000 records. Elapsed time: 00:21:50s. Time for last 1,000,000: 1s. Last read position: chr22:41,252,885
INFO 2026-06-08 09:10:29 MarkDuplicates Tracking 69555 as yet unmatched pairs. 17115 records in RAM.
INFO 2026-06-08 09:10:30 MarkDuplicates Read 609,000,000 records. Elapsed time: 00:21:52s. Time for last 1,000,000: 1s. Last read position: chr22:42,383,308
INFO 2026-06-08 09:10:30 MarkDuplicates Tracking 66248 as yet unmatched pairs. 13808 records in RAM.
INFO 2026-06-08 09:10:33 MarkDuplicates Read 610,000,000 records. Elapsed time: 00:21:54s. Time for last 1,000,000: 2s. Last read position: chr22:45,729,581
INFO 2026-06-08 09:10:33 MarkDuplicates Tracking 63859 as yet unmatched pairs. 11415 records in RAM.
INFO 2026-06-08 09:10:35 MarkDuplicates Read 611,000,000 records. Elapsed time: 00:21:56s. Time for last 1,000,000: 1s. Last read position: chr22:50,218,793
INFO 2026-06-08 09:10:35 MarkDuplicates Tracking 60627 as yet unmatched pairs. 8183 records in RAM.
INFO 2026-06-08 09:10:36 MarkDuplicates Read 612,000,000 records. Elapsed time: 00:21:58s. Time for last 1,000,000: 1s. Last read position: chr22:50,468,391
INFO 2026-06-08 09:10:36 MarkDuplicates Tracking 57301 as yet unmatched pairs. 4857 records in RAM.
INFO 2026-06-08 09:10:38 MarkDuplicates Read 613,000,000 records. Elapsed time: 00:21:59s. Time for last 1,000,000: 1s. Last read position: chr22:50,625,589
INFO 2026-06-08 09:10:38 MarkDuplicates Tracking 53492 as yet unmatched pairs. 1048 records in RAM.
INFO 2026-06-08 09:10:40 MarkDuplicates Read 614,000,000 records. Elapsed time: 00:22:01s. Time for last 1,000,000: 1s. Last read position: chrX:3,321,119
INFO 2026-06-08 09:10:40 MarkDuplicates Tracking 51126 as yet unmatched pairs. 40273 records in RAM.
INFO 2026-06-08 09:10:42 MarkDuplicates Read 615,000,000 records. Elapsed time: 00:22:03s. Time for last 1,000,000: 1s. Last read position: chrX:18,510,818
INFO 2026-06-08 09:10:42 MarkDuplicates Tracking 47931 as yet unmatched pairs. 37071 records in RAM.
INFO 2026-06-08 09:10:43 MarkDuplicates Read 616,000,000 records. Elapsed time: 00:22:05s. Time for last 1,000,000: 1s. Last read position: chrX:40,071,677
INFO 2026-06-08 09:10:43 MarkDuplicates Tracking 46086 as yet unmatched pairs. 35225 records in RAM.
INFO 2026-06-08 09:10:44 MarkDuplicates Read 617,000,000 records. Elapsed time: 00:22:06s. Time for last 1,000,000: 1s. Last read position: chrX:47,147,355
INFO 2026-06-08 09:10:44 MarkDuplicates Tracking 43836 as yet unmatched pairs. 32975 records in RAM.
INFO 2026-06-08 09:10:46 MarkDuplicates Read 618,000,000 records. Elapsed time: 00:22:07s. Time for last 1,000,000: 1s. Last read position: chrX:48,823,203
INFO 2026-06-08 09:10:46 MarkDuplicates Tracking 41058 as yet unmatched pairs. 30197 records in RAM.
INFO 2026-06-08 09:10:48 MarkDuplicates Read 619,000,000 records. Elapsed time: 00:22:09s. Time for last 1,000,000: 1s. Last read position: chrX:52,066,816
INFO 2026-06-08 09:10:48 MarkDuplicates Tracking 37933 as yet unmatched pairs. 27072 records in RAM.
INFO 2026-06-08 09:10:49 MarkDuplicates Read 620,000,000 records. Elapsed time: 00:22:11s. Time for last 1,000,000: 1s. Last read position: chrX:53,602,598
INFO 2026-06-08 09:10:49 MarkDuplicates Tracking 36618 as yet unmatched pairs. 25757 records in RAM.
INFO 2026-06-08 09:10:50 MarkDuplicates Read 621,000,000 records. Elapsed time: 00:22:12s. Time for last 1,000,000: 1s. Last read position: chrX:68,721,447
INFO 2026-06-08 09:10:50 MarkDuplicates Tracking 32895 as yet unmatched pairs. 22033 records in RAM.
INFO 2026-06-08 09:10:52 MarkDuplicates Read 622,000,000 records. Elapsed time: 00:22:14s. Time for last 1,000,000: 1s. Last read position: chrX:71,564,622
INFO 2026-06-08 09:10:52 MarkDuplicates Tracking 31611 as yet unmatched pairs. 20746 records in RAM.
INFO 2026-06-08 09:10:54 MarkDuplicates Read 623,000,000 records. Elapsed time: 00:22:15s. Time for last 1,000,000: 1s. Last read position: chrX:78,123,311
INFO 2026-06-08 09:10:54 MarkDuplicates Tracking 28484 as yet unmatched pairs. 17619 records in RAM.
INFO 2026-06-08 09:10:55 MarkDuplicates Read 624,000,000 records. Elapsed time: 00:22:17s. Time for last 1,000,000: 1s. Last read position: chrX:107,640,973
INFO 2026-06-08 09:10:55 MarkDuplicates Tracking 25915 as yet unmatched pairs. 15050 records in RAM.
INFO 2026-06-08 09:10:57 MarkDuplicates Read 625,000,000 records. Elapsed time: 00:22:18s. Time for last 1,000,000: 1s. Last read position: chrX:120,543,786
INFO 2026-06-08 09:10:57 MarkDuplicates Tracking 23789 as yet unmatched pairs. 12924 records in RAM.
INFO 2026-06-08 09:10:59 MarkDuplicates Read 626,000,000 records. Elapsed time: 00:22:20s. Time for last 1,000,000: 2s. Last read position: chrX:139,774,904
INFO 2026-06-08 09:10:59 MarkDuplicates Tracking 20921 as yet unmatched pairs. 10055 records in RAM.
INFO 2026-06-08 09:11:00 MarkDuplicates Read 627,000,000 records. Elapsed time: 00:22:22s. Time for last 1,000,000: 1s. Last read position: chrX:153,794,750
INFO 2026-06-08 09:11:00 MarkDuplicates Tracking 20254 as yet unmatched pairs. 9388 records in RAM.
INFO 2026-06-08 09:11:02 MarkDuplicates Read 628,000,000 records. Elapsed time: 00:22:23s. Time for last 1,000,000: 1s. Last read position: chrX:154,354,201
INFO 2026-06-08 09:11:02 MarkDuplicates Tracking 16569 as yet unmatched pairs. 5703 records in RAM.
INFO 2026-06-08 09:11:04 MarkDuplicates Read 629,000,000 records. Elapsed time: 00:22:25s. Time for last 1,000,000: 1s. Last read position: chrX:154,467,404
INFO 2026-06-08 09:11:04 MarkDuplicates Tracking 12684 as yet unmatched pairs. 1818 records in RAM.
INFO 2026-06-08 09:11:05 MarkDuplicates Read 630,000,000 records. Elapsed time: 00:22:27s. Time for last 1,000,000: 1s. Last read position: GL000220.1:114,156
INFO 2026-06-08 09:11:05 MarkDuplicates Tracking 10525 as yet unmatched pairs. 3508 records in RAM.
INFO 2026-06-08 09:11:06 MarkDuplicates Read 631,000,000 records. Elapsed time: 00:22:28s. Time for last 1,000,000: 1s. Last read position: GL000220.1:141,912
INFO 2026-06-08 09:11:06 MarkDuplicates Tracking 7138 as yet unmatched pairs. 120 records in RAM.
INFO 2026-06-08 09:11:07 MarkDuplicates Read 632,000,000 records. Elapsed time: 00:22:29s. Time for last 1,000,000: 1s. Last read position: GL000220.1:160,361
INFO 2026-06-08 09:11:07 MarkDuplicates Tracking 7032 as yet unmatched pairs. 14 records in RAM.
INFO 2026-06-08 09:11:09 MarkDuplicates Read 633,000,000 records. Elapsed time: 00:22:30s. Time for last 1,000,000: 1s. Last read position: KI270733.1:131,062
INFO 2026-06-08 09:11:09 MarkDuplicates Tracking 2490 as yet unmatched pairs. 2473 records in RAM.
INFO 2026-06-08 09:11:10 MarkDuplicates Read 634,000,000 records. Elapsed time: 00:22:31s. Time for last 1,000,000: 1s. Last read position: KI270733.1:176,100
INFO 2026-06-08 09:11:10 MarkDuplicates Tracking 82 as yet unmatched pairs. 65 records in RAM.
INFO 2026-06-08 09:11:11 MarkDuplicates Read 634853476 records. 0 pairs never matched.
INFO 2026-06-08 09:12:02 MarkDuplicates After buildSortedReadEndLists freeMemory: 204142608; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:12:02 MarkDuplicates Will retain up to 1987051520 duplicate indices before spilling to disk.
INFO 2026-06-08 09:12:08 MarkDuplicates Traversing read pair information and detecting duplicates.
WARNING 2026-06-08 09:12:08 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 09:12:28 OpticalDuplicateFinder Large duplicate set. size = 1163
INFO 2026-06-08 09:12:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,484
INFO 2026-06-08 09:12:28 OpticalDuplicateFinder Large duplicate set. size = 1202
INFO 2026-06-08 09:12:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,843
INFO 2026-06-08 09:12:28 OpticalDuplicateFinder Large duplicate set. size = 1902
INFO 2026-06-08 09:12:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,799
INFO 2026-06-08 09:12:28 OpticalDuplicateFinder Large duplicate set. size = 1029
INFO 2026-06-08 09:12:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,594
INFO 2026-06-08 09:12:51 OpticalDuplicateFinder Large duplicate set. size = 1005
INFO 2026-06-08 09:12:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,346
INFO 2026-06-08 09:12:51 OpticalDuplicateFinder Large duplicate set. size = 1155
INFO 2026-06-08 09:12:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,328
INFO 2026-06-08 09:12:51 OpticalDuplicateFinder Large duplicate set. size = 1021
INFO 2026-06-08 09:12:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,640
INFO 2026-06-08 09:12:51 OpticalDuplicateFinder Large duplicate set. size = 1273
INFO 2026-06-08 09:12:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,520
INFO 2026-06-08 09:12:59 OpticalDuplicateFinder Large duplicate set. size = 1160
INFO 2026-06-08 09:12:59 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,774
INFO 2026-06-08 09:13:00 OpticalDuplicateFinder Large duplicate set. size = 1307
INFO 2026-06-08 09:13:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,989
INFO 2026-06-08 09:13:00 OpticalDuplicateFinder Large duplicate set. size = 1651
INFO 2026-06-08 09:13:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,796
INFO 2026-06-08 09:13:00 OpticalDuplicateFinder Large duplicate set. size = 1412
INFO 2026-06-08 09:13:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,569
INFO 2026-06-08 09:13:00 OpticalDuplicateFinder Large duplicate set. size = 1166
INFO 2026-06-08 09:13:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,442
INFO 2026-06-08 09:13:00 OpticalDuplicateFinder Large duplicate set. size = 1194
INFO 2026-06-08 09:13:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,832
INFO 2026-06-08 09:13:00 OpticalDuplicateFinder Large duplicate set. size = 1645
INFO 2026-06-08 09:13:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,869
INFO 2026-06-08 09:13:00 OpticalDuplicateFinder Large duplicate set. size = 1314
INFO 2026-06-08 09:13:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,920
INFO 2026-06-08 09:13:00 OpticalDuplicateFinder Large duplicate set. size = 1150
INFO 2026-06-08 09:13:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,020
INFO 2026-06-08 09:13:00 OpticalDuplicateFinder Large duplicate set. size = 1132
INFO 2026-06-08 09:13:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,950
INFO 2026-06-08 09:13:00 OpticalDuplicateFinder Large duplicate set. size = 1116
INFO 2026-06-08 09:13:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,337
INFO 2026-06-08 09:13:00 OpticalDuplicateFinder Large duplicate set. size = 1034
INFO 2026-06-08 09:13:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,463
INFO 2026-06-08 09:13:00 OpticalDuplicateFinder Large duplicate set. size = 1050
INFO 2026-06-08 09:13:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,834
INFO 2026-06-08 09:13:00 OpticalDuplicateFinder Large duplicate set. size = 1246
INFO 2026-06-08 09:13:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,692
INFO 2026-06-08 09:13:00 OpticalDuplicateFinder Large duplicate set. size = 1019
INFO 2026-06-08 09:13:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,940
INFO 2026-06-08 09:13:00 OpticalDuplicateFinder Large duplicate set. size = 1002
INFO 2026-06-08 09:13:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,500
INFO 2026-06-08 09:13:01 OpticalDuplicateFinder Large duplicate set. size = 1757
INFO 2026-06-08 09:13:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,715
INFO 2026-06-08 09:13:01 OpticalDuplicateFinder Large duplicate set. size = 1562
INFO 2026-06-08 09:13:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,987
INFO 2026-06-08 09:13:01 OpticalDuplicateFinder Large duplicate set. size = 1095
INFO 2026-06-08 09:13:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,250
INFO 2026-06-08 09:13:01 OpticalDuplicateFinder Large duplicate set. size = 1151
INFO 2026-06-08 09:13:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,857
INFO 2026-06-08 09:13:01 OpticalDuplicateFinder Large duplicate set. size = 1203
INFO 2026-06-08 09:13:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,318
INFO 2026-06-08 09:13:31 MarkDuplicates Traversing fragment information and detecting duplicates.
WARNING 2026-06-08 09:13:31 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 09:14:28 MarkDuplicates Sorting list of duplicate records.
INFO 2026-06-08 09:14:30 MarkDuplicates After generateDuplicateIndexes freeMemory: 203950840; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:14:30 MarkDuplicates Marking 291237812 records as duplicates.
INFO 2026-06-08 09:14:30 MarkDuplicates Found 31218067 optical duplicate clusters.
INFO 2026-06-08 09:14:30 MarkDuplicates Reads are assumed to be ordered by: coordinate
INFO 2026-06-08 09:14:46 MarkDuplicates Written 10,000,000 records. Elapsed time: 00:00:16s. Time for last 10,000,000: 16s. Last read position: chr1:22,091,496
INFO 2026-06-08 09:15:02 MarkDuplicates Written 20,000,000 records. Elapsed time: 00:00:32s. Time for last 10,000,000: 15s. Last read position: chr1:43,431,300
INFO 2026-06-08 09:15:18 MarkDuplicates Written 30,000,000 records. Elapsed time: 00:00:48s. Time for last 10,000,000: 15s. Last read position: chr1:113,671,776
INFO 2026-06-08 09:15:34 MarkDuplicates Written 40,000,000 records. Elapsed time: 00:01:04s. Time for last 10,000,000: 15s. Last read position: chr1:153,663,043
INFO 2026-06-08 09:15:50 MarkDuplicates Written 50,000,000 records. Elapsed time: 00:01:19s. Time for last 10,000,000: 15s. Last read position: chr1:166,849,331
INFO 2026-06-08 09:16:05 MarkDuplicates Written 60,000,000 records. Elapsed time: 00:01:35s. Time for last 10,000,000: 15s. Last read position: chr1:223,755,529
INFO 2026-06-08 09:16:21 MarkDuplicates Written 70,000,000 records. Elapsed time: 00:01:51s. Time for last 10,000,000: 15s. Last read position: chr2:27,664,424
INFO 2026-06-08 09:16:37 MarkDuplicates Written 80,000,000 records. Elapsed time: 00:02:07s. Time for last 10,000,000: 15s. Last read position: chr2:65,091,051
INFO 2026-06-08 09:16:53 MarkDuplicates Written 90,000,000 records. Elapsed time: 00:02:23s. Time for last 10,000,000: 16s. Last read position: chr2:131,126,724
INFO 2026-06-08 09:17:10 MarkDuplicates Written 100,000,000 records. Elapsed time: 00:02:40s. Time for last 10,000,000: 16s. Last read position: chr2:215,372,348
INFO 2026-06-08 09:17:26 MarkDuplicates Written 110,000,000 records. Elapsed time: 00:02:55s. Time for last 10,000,000: 15s. Last read position: chr2:239,068,548
INFO 2026-06-08 09:17:42 MarkDuplicates Written 120,000,000 records. Elapsed time: 00:03:12s. Time for last 10,000,000: 16s. Last read position: chr3:49,056,991
INFO 2026-06-08 09:17:58 MarkDuplicates Written 130,000,000 records. Elapsed time: 00:03:28s. Time for last 10,000,000: 15s. Last read position: chr3:128,625,872
INFO 2026-06-08 09:18:15 MarkDuplicates Written 140,000,000 records. Elapsed time: 00:03:44s. Time for last 10,000,000: 16s. Last read position: chr4:1,956,124
INFO 2026-06-08 09:18:30 MarkDuplicates Written 150,000,000 records. Elapsed time: 00:04:00s. Time for last 10,000,000: 15s. Last read position: chr4:112,431,832
INFO 2026-06-08 09:18:47 MarkDuplicates Written 160,000,000 records. Elapsed time: 00:04:17s. Time for last 10,000,000: 16s. Last read position: chr5:53,078,832
INFO 2026-06-08 09:19:03 MarkDuplicates Written 170,000,000 records. Elapsed time: 00:04:32s. Time for last 10,000,000: 15s. Last read position: chr5:140,436,212
INFO 2026-06-08 09:19:18 MarkDuplicates Written 180,000,000 records. Elapsed time: 00:04:48s. Time for last 10,000,000: 15s. Last read position: chr5:176,290,139
INFO 2026-06-08 09:19:34 MarkDuplicates Written 190,000,000 records. Elapsed time: 00:05:04s. Time for last 10,000,000: 15s. Last read position: chr6:31,271,196
INFO 2026-06-08 09:19:51 MarkDuplicates Written 200,000,000 records. Elapsed time: 00:05:20s. Time for last 10,000,000: 16s. Last read position: chr6:36,201,392
INFO 2026-06-08 09:20:07 MarkDuplicates Written 210,000,000 records. Elapsed time: 00:05:37s. Time for last 10,000,000: 16s. Last read position: chr6:148,544,516
INFO 2026-06-08 09:20:23 MarkDuplicates Written 220,000,000 records. Elapsed time: 00:05:53s. Time for last 10,000,000: 15s. Last read position: chr7:43,866,736
INFO 2026-06-08 09:20:39 MarkDuplicates Written 230,000,000 records. Elapsed time: 00:06:09s. Time for last 10,000,000: 15s. Last read position: chr7:99,389,877
INFO 2026-06-08 09:20:55 MarkDuplicates Written 240,000,000 records. Elapsed time: 00:06:25s. Time for last 10,000,000: 15s. Last read position: chr7:144,269,025
INFO 2026-06-08 09:21:11 MarkDuplicates Written 250,000,000 records. Elapsed time: 00:06:40s. Time for last 10,000,000: 15s. Last read position: chr8:61,517,538
INFO 2026-06-08 09:21:27 MarkDuplicates Written 260,000,000 records. Elapsed time: 00:06:57s. Time for last 10,000,000: 16s. Last read position: chr8:143,275,025
INFO 2026-06-08 09:21:42 MarkDuplicates Written 270,000,000 records. Elapsed time: 00:07:12s. Time for last 10,000,000: 15s. Last read position: chr9:19,376,535
INFO 2026-06-08 09:21:58 MarkDuplicates Written 280,000,000 records. Elapsed time: 00:07:28s. Time for last 10,000,000: 15s. Last read position: chr9:121,331,387
INFO 2026-06-08 09:22:14 MarkDuplicates Written 290,000,000 records. Elapsed time: 00:07:44s. Time for last 10,000,000: 15s. Last read position: chr10:3,108,734
INFO 2026-06-08 09:22:30 MarkDuplicates Written 300,000,000 records. Elapsed time: 00:08:00s. Time for last 10,000,000: 16s. Last read position: chr10:73,799,120
INFO 2026-06-08 09:22:47 MarkDuplicates Written 310,000,000 records. Elapsed time: 00:08:17s. Time for last 10,000,000: 17s. Last read position: chr11:319,900
INFO 2026-06-08 09:23:05 MarkDuplicates Written 320,000,000 records. Elapsed time: 00:08:35s. Time for last 10,000,000: 17s. Last read position: chr11:57,312,960
INFO 2026-06-08 09:23:22 MarkDuplicates Written 330,000,000 records. Elapsed time: 00:08:51s. Time for last 10,000,000: 16s. Last read position: chr11:65,965,371
INFO 2026-06-08 09:23:38 MarkDuplicates Written 340,000,000 records. Elapsed time: 00:09:08s. Time for last 10,000,000: 16s. Last read position: chr11:118,504,152
INFO 2026-06-08 09:23:54 MarkDuplicates Written 350,000,000 records. Elapsed time: 00:09:24s. Time for last 10,000,000: 15s. Last read position: chr12:24,901,813
INFO 2026-06-08 09:24:10 MarkDuplicates Written 360,000,000 records. Elapsed time: 00:09:40s. Time for last 10,000,000: 15s. Last read position: chr12:56,721,107
INFO 2026-06-08 09:24:26 MarkDuplicates Written 370,000,000 records. Elapsed time: 00:09:56s. Time for last 10,000,000: 15s. Last read position: chr12:113,273,254
INFO 2026-06-08 09:24:42 MarkDuplicates Written 380,000,000 records. Elapsed time: 00:10:12s. Time for last 10,000,000: 16s. Last read position: chr13:77,180,193
INFO 2026-06-08 09:25:00 MarkDuplicates Written 390,000,000 records. Elapsed time: 00:10:30s. Time for last 10,000,000: 17s. Last read position: chr14:64,162,227
INFO 2026-06-08 09:25:16 MarkDuplicates Written 400,000,000 records. Elapsed time: 00:10:46s. Time for last 10,000,000: 15s. Last read position: chr14:105,707,373
INFO 2026-06-08 09:25:31 MarkDuplicates Written 410,000,000 records. Elapsed time: 00:11:01s. Time for last 10,000,000: 15s. Last read position: chr15:31,372,163
INFO 2026-06-08 09:25:47 MarkDuplicates Written 420,000,000 records. Elapsed time: 00:11:17s. Time for last 10,000,000: 15s. Last read position: chr15:73,702,838
INFO 2026-06-08 09:26:03 MarkDuplicates Written 430,000,000 records. Elapsed time: 00:11:32s. Time for last 10,000,000: 15s. Last read position: chr16:2,766,038
INFO 2026-06-08 09:26:18 MarkDuplicates Written 440,000,000 records. Elapsed time: 00:11:48s. Time for last 10,000,000: 15s. Last read position: chr16:27,492,658
INFO 2026-06-08 09:26:34 MarkDuplicates Written 450,000,000 records. Elapsed time: 00:12:04s. Time for last 10,000,000: 15s. Last read position: chr16:67,957,769
INFO 2026-06-08 09:26:50 MarkDuplicates Written 460,000,000 records. Elapsed time: 00:12:20s. Time for last 10,000,000: 15s. Last read position: chr17:7,220,472
INFO 2026-06-08 09:27:06 MarkDuplicates Written 470,000,000 records. Elapsed time: 00:12:36s. Time for last 10,000,000: 15s. Last read position: chr17:36,432,022
INFO 2026-06-08 09:27:22 MarkDuplicates Written 480,000,000 records. Elapsed time: 00:12:52s. Time for last 10,000,000: 16s. Last read position: chr17:39,710,120
INFO 2026-06-08 09:27:37 MarkDuplicates Written 490,000,000 records. Elapsed time: 00:13:07s. Time for last 10,000,000: 15s. Last read position: chr17:39,727,951
INFO 2026-06-08 09:27:55 MarkDuplicates Written 500,000,000 records. Elapsed time: 00:13:25s. Time for last 10,000,000: 17s. Last read position: chr17:50,187,519
INFO 2026-06-08 09:28:11 MarkDuplicates Written 510,000,000 records. Elapsed time: 00:13:41s. Time for last 10,000,000: 15s. Last read position: chr17:63,836,970
INFO 2026-06-08 09:28:27 MarkDuplicates Written 520,000,000 records. Elapsed time: 00:13:57s. Time for last 10,000,000: 15s. Last read position: chr17:81,283,442
INFO 2026-06-08 09:28:43 MarkDuplicates Written 530,000,000 records. Elapsed time: 00:14:13s. Time for last 10,000,000: 16s. Last read position: chr19:861,778
INFO 2026-06-08 09:29:09 MarkDuplicates Written 540,000,000 records. Elapsed time: 00:14:39s. Time for last 10,000,000: 26s. Last read position: chr19:10,994,808
INFO 2026-06-08 09:29:35 MarkDuplicates Written 550,000,000 records. Elapsed time: 00:15:05s. Time for last 10,000,000: 25s. Last read position: chr19:19,679,726
INFO 2026-06-08 09:29:52 MarkDuplicates Written 560,000,000 records. Elapsed time: 00:15:21s. Time for last 10,000,000: 16s. Last read position: chr19:46,700,844
INFO 2026-06-08 09:30:09 MarkDuplicates Written 570,000,000 records. Elapsed time: 00:15:39s. Time for last 10,000,000: 17s. Last read position: chr20:3,889,616
INFO 2026-06-08 09:30:27 MarkDuplicates Written 580,000,000 records. Elapsed time: 00:15:56s. Time for last 10,000,000: 17s. Last read position: chr20:56,637,867
INFO 2026-06-08 09:30:44 MarkDuplicates Written 590,000,000 records. Elapsed time: 00:16:14s. Time for last 10,000,000: 17s. Last read position: chr21:33,555,339
INFO 2026-06-08 09:31:00 MarkDuplicates Written 600,000,000 records. Elapsed time: 00:16:30s. Time for last 10,000,000: 16s. Last read position: chr22:28,795,045
INFO 2026-06-08 09:31:18 MarkDuplicates Written 610,000,000 records. Elapsed time: 00:16:48s. Time for last 10,000,000: 17s. Last read position: chr22:45,729,581
INFO 2026-06-08 09:31:34 MarkDuplicates Written 620,000,000 records. Elapsed time: 00:17:04s. Time for last 10,000,000: 16s. Last read position: chrX:53,602,598
INFO 2026-06-08 09:31:51 MarkDuplicates Written 630,000,000 records. Elapsed time: 00:17:21s. Time for last 10,000,000: 16s. Last read position: GL000220.1:114,156
INFO 2026-06-08 09:32:06 MarkDuplicates Writing complete. Closing input iterator.
INFO 2026-06-08 09:32:06 MarkDuplicates Duplicate Index cleanup.
INFO 2026-06-08 09:32:06 MarkDuplicates Getting Memory Stats.
INFO 2026-06-08 09:32:06 MarkDuplicates Before output close freeMemory: 203912568; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:32:06 MarkDuplicates Closed outputs. Getting more Memory Stats.
INFO 2026-06-08 09:32:06 MarkDuplicates After output close freeMemory: 104158304; totalMemory: 134217728; maxMemory: 63585648640
[Mon Jun 08 09:32:06 GMT 2026] picard.sam.markduplicates.MarkDuplicates done. Elapsed time: 43.49 minutes.
Runtime.totalMemory()=134217728
Tool returned:
0
ls: *cram: No such file or directory
ls: *.crai: No such file or directory