Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9e/1dd249f61149e9ff9a5aa1297e6d16/tih_rna_sample_00722_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/17/1fec081ce51123072d0a7bad69ffc6/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/17/1fec081ce51123072d0a7bad69ffc6/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9e/dbc0f07c7c78e2ba9c1320339163a4/tih_rna_sample_00722_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (4 inputs)

[W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00722_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai
Load BAM file ...  Done
report duplicte rate based on sequence ...
report duplicte rate based on mapping  ...
generate R script ...
null device 
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