Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/43/ae8d36b8fc1ad5e8a2f88cd6ead23b/FFPE_V4_0002_RNA_0001_B23MVV7LT4_1
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ad/cfda511b6ca990d949b53468c31691/FFPE_V4_0002_RNA_0001_B23MVV7LT4_1.sample_qc.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/85/167f6a2957df2b36f0e56a1d06cb1f/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/85/167f6a2957df2b36f0e56a1d06cb1f/.command.run
==> STAGING COMPLETE (4 inputs)

Processing Kallisto file: FFPE_V4_0002_RNA_0001_B23MVV7LT4_1/abundance.h5
Successfully converted FFPE_V4_0002_RNA_0001_B23MVV7LT4_1/abundance.h5 to FFPE_V4_0002_RNA_0001_B23MVV7LT4_1_kallisto_mqc.tsv
  Sample: FFPE_V4_0002_RNA_0001_B23MVV7LT4_1
  Mean Fragment Length: 170.7 bp
  Median Fragment Length: 155.0 bp
  pct_mito_est_counts: 0.006%
  pct_ribo_est_counts: 1.81%
  pct_hk_est_counts: 1.028%
  pct_male_est_counts: 0.0%
  pct_mito_tpm: 0.012%
  pct_ribo_tpm: 5.061%
  pct_hk_tpm: 1.441%
  pct_male_tpm: 0.0%
  score_log2tpm1_mean_chry_signature: 6.718%