Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f8/b087d862c326a0b996b873e3d22165/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f8/b087d862c326a0b996b873e3d22165/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/blacklist_breakpoint_database_2026-04-27.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/13/13e668387f34079718266808dcf3a2/tih_rna_sample_00677_B23MVV7LT4_1.arriba.fusions.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-7324c8a8-f474-426a-a5c9-715912777f94/d8/92d6652b0b8fcc763d0f3fff270437/arriba_filter_config.yaml
==> STAGING COMPLETE (5 inputs)

  AIH curated blacklist: matched 0 fusion rows (breakpoint_ID in qualified set)

================================================================================
ARRIBA FILTERING SUMMARY
================================================================================

Total fusions: 6
  Pass (FILTER=PASS): 0 (0.0%)
  Fail (FILTER=FAIL): 6 (100.0%)

Failure reasons (top 15):
  confidence_below_min(low<high): 3
  confidence_below_min(medium<high): 1
  confidence_below_min(low<high);total_reads_below_min(7.0<8.0): 1
  confidence_below_min(low<high);total_reads_below_min(2.0<8.0): 1

Breakdown by confidence:
  low: 0 pass, 5 fail (total: 5)
  medium: 0 pass, 1 fail (total: 1)
Arriba filter: 6 rows -> 0 PASS; wrote tih_rna_sample_00677_B23MVV7LT4_1.arriba.fusions.filtered.tsv and tih_rna_sample_00677_B23MVV7LT4_1.arriba.fusions.filtered_pass_only.tsv
Summary written to: tih_rna_sample_00677_B23MVV7LT4_1.arriba.fusions.filter_summary.txt