File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f4/a3226c328ac8e76ed79e385a86f04f/.command.log
Size
6.1 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (tih_rna_sample_00588_B23MVV7LT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0f/9ffd9a96d4e2bb67d785e32ae9b0d2/tih_rna_sample_00588_B23MVV7LT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bb/7364adcb0d86c62688777b98511a0b/tih_rna_sample_00588_B23MVV7LT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f4/a3226c328ac8e76ed79e385a86f04f/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-7324c8a8-f474-426a-a5c9-715912777f94/c4/140ab148cdcf1ed9bdffe91f534e47/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f4/a3226c328ac8e76ed79e385a86f04f/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
==> STAGING COMPLETE (6 inputs)

Running application...
PRKCH--MDGA2
starfusion
arriba
ERBB2--SRCIN1
starfusion
PCGF2--ERBB2
starfusion
TLK2P1--AC110079.1
starfusion
TLK2--AC240565.1
starfusion
LZTS2--FFAR4
starfusion
arriba
FBXL20--IKZF3
starfusion
CCSER1--DMP1
starfusion
arriba
KIF2A--LINC02229
starfusion
PLXDC1--ACACA
starfusion
TVP23C--CDRT4
arriba
STX16--NPEPL1
arriba
PCDHA11--PCDHAC1
arriba
PCDHA11--PCDHAC2
arriba
PCDHA11--PCDHA13
arriba
PCDHA4--PCDHAC1
arriba
PCDHA4--PCDHAC2
arriba
PCDHA4--PCDHA13
arriba
ERBB2--ERBB2
arriba
SUFU--HIF1AN
arriba
SUFU--Metazoa_SRP
arriba
MAGI3--AL357055.2
arriba
MAGI3--MAGI3
arriba
TOGARAM1--PLEKHD1
arriba
AC092807.3--DDAH1
arriba
NEBL--PLXDC2
arriba

  0%|          | 0/26 [00:00<?, ?it/s]
Processing PRKCH--MDGA2:   0%|          | 0/26 [00:00<?, ?it/s]
Processing PRKCH--MDGA2:   4%|▍         | 1/26 [00:00<00:02,  9.08it/s]
Processing ERBB2--SRCIN1:   4%|▍         | 1/26 [00:00<00:02,  9.08it/s]
Processing ERBB2--SRCIN1:   8%|▊         | 2/26 [00:00<00:02,  9.35it/s]
Processing PCGF2--ERBB2:   8%|▊         | 2/26 [00:00<00:02,  9.35it/s] 
Processing PCGF2--ERBB2:  12%|█▏        | 3/26 [00:00<00:02,  9.46it/s]
Processing TLK2P1--AC110079.1:  12%|█▏        | 3/26 [00:00<00:02,  9.46it/s]
Processing TLK2P1--AC110079.1:  15%|█▌        | 4/26 [00:00<00:02,  9.48it/s]
Processing TLK2--AC240565.1:  15%|█▌        | 4/26 [00:00<00:02,  9.48it/s]  
Processing TLK2--AC240565.1:  19%|█▉        | 5/26 [00:00<00:02,  9.51it/s]
Processing LZTS2--FFAR4:  19%|█▉        | 5/26 [00:00<00:02,  9.51it/s]    
Processing LZTS2--FFAR4:  23%|██▎       | 6/26 [00:00<00:02,  9.54it/s]
Processing FBXL20--IKZF3:  23%|██▎       | 6/26 [00:00<00:02,  9.54it/s]
Processing FBXL20--IKZF3:  27%|██▋       | 7/26 [00:00<00:01,  9.55it/s]
Processing CCSER1--DMP1:  27%|██▋       | 7/26 [00:00<00:01,  9.55it/s] 
Processing CCSER1--DMP1:  31%|███       | 8/26 [00:00<00:01,  9.52it/s]
Processing KIF2A--LINC02229:  31%|███       | 8/26 [00:00<00:01,  9.52it/s]
Processing KIF2A--LINC02229:  35%|███▍      | 9/26 [00:00<00:01,  9.51it/s]
Processing PLXDC1--ACACA:  35%|███▍      | 9/26 [00:00<00:01,  9.51it/s]   
Processing PLXDC1--ACACA:  38%|███▊      | 10/26 [00:01<00:01,  9.52it/s]
Processing TVP23C--CDRT4:  38%|███▊      | 10/26 [00:01<00:01,  9.52it/s]
Processing TVP23C--CDRT4:  42%|████▏     | 11/26 [00:01<00:01,  9.53it/s]
Processing STX16--NPEPL1:  42%|████▏     | 11/26 [00:01<00:01,  9.53it/s]
Processing STX16--NPEPL1:  46%|████▌     | 12/26 [00:01<00:01,  9.55it/s]
Processing PCDHA11--PCDHAC1:  46%|████▌     | 12/26 [00:01<00:01,  9.55it/s]
Processing PCDHA11--PCDHAC1:  50%|█████     | 13/26 [00:01<00:01,  9.57it/s]
Processing PCDHA11--PCDHAC2:  50%|█████     | 13/26 [00:01<00:01,  9.57it/s]
Processing PCDHA11--PCDHAC2:  54%|█████▍    | 14/26 [00:01<00:01,  9.56it/s]
Processing PCDHA11--PCDHA13:  54%|█████▍    | 14/26 [00:01<00:01,  9.56it/s]
Processing PCDHA11--PCDHA13:  58%|█████▊    | 15/26 [00:01<00:01,  9.57it/s]
Processing PCDHA4--PCDHAC1:  58%|█████▊    | 15/26 [00:01<00:01,  9.57it/s] 
Processing PCDHA4--PCDHAC1:  62%|██████▏   | 16/26 [00:01<00:01,  9.55it/s]
Processing PCDHA4--PCDHAC2:  62%|██████▏   | 16/26 [00:01<00:01,  9.55it/s]
Processing PCDHA4--PCDHAC2:  65%|██████▌   | 17/26 [00:01<00:00,  9.55it/s]
Processing PCDHA4--PCDHA13:  65%|██████▌   | 17/26 [00:01<00:00,  9.55it/s]
Processing PCDHA4--PCDHA13:  69%|██████▉   | 18/26 [00:01<00:00,  9.55it/s]
Processing ERBB2--ERBB2:  69%|██████▉   | 18/26 [00:01<00:00,  9.55it/s]   
Processing ERBB2--ERBB2:  73%|███████▎  | 19/26 [00:01<00:00,  9.57it/s]
Processing SUFU--HIF1AN:  73%|███████▎  | 19/26 [00:01<00:00,  9.57it/s]
Processing SUFU--HIF1AN:  77%|███████▋  | 20/26 [00:02<00:00,  9.58it/s]
Processing SUFU--Metazoa_SRP:  77%|███████▋  | 20/26 [00:02<00:00,  9.58it/s]
Processing SUFU--Metazoa_SRP:  81%|████████  | 21/26 [00:02<00:00,  9.58it/s]
Processing MAGI3--AL357055.2:  81%|████████  | 21/26 [00:02<00:00,  9.58it/s]
Processing MAGI3--AL357055.2:  85%|████████▍ | 22/26 [00:02<00:00,  9.57it/s]
Processing MAGI3--MAGI3:  85%|████████▍ | 22/26 [00:02<00:00,  9.57it/s]     
Processing MAGI3--MAGI3:  88%|████████▊ | 23/26 [00:02<00:00,  9.56it/s]
Processing TOGARAM1--PLEKHD1:  88%|████████▊ | 23/26 [00:02<00:00,  9.56it/s]
Processing TOGARAM1--PLEKHD1:  92%|█████████▏| 24/26 [00:02<00:00,  9.55it/s]
Processing AC092807.3--DDAH1:  92%|█████████▏| 24/26 [00:02<00:00,  9.55it/s]
Processing AC092807.3--DDAH1:  96%|█████████▌| 25/26 [00:02<00:00,  9.56it/s]
Processing NEBL--PLXDC2:  96%|█████████▌| 25/26 [00:02<00:00,  9.56it/s]     
Processing NEBL--PLXDC2: 100%|██████████| 26/26 [00:02<00:00,  9.56it/s]
Processing NEBL--PLXDC2: 100%|██████████| 26/26 [00:02<00:00,  9.54it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory