Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bf/8cfd6459114f7112de50b69f78a62f/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bf/8cfd6459114f7112de50b69f78a62f/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/19/8af7d2755dfbec74cacdab26bd52ff/tih_rna_sample_00731_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d0/d1a6f83cd99cc2195081b36a6627cc/tih_rna_sample_00731_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)

ls: *.sam: No such file or directory
ls: *.csi: No such file or directory
ls: *.crai: No such file or directory