File Info

Filename
fi_workdir/Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0a/5cd8fd4f517a2b5ba3086ce1ec1dc4/fi_workdir/Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 10:14:51
                             Started mapping on |	Jun 08 10:22:01
                                    Finished on |	Jun 08 11:30:30
       Mapping speed, Million of reads per hour |	259.22

                          Number of input reads |	295868572
                      Average input read length |	234
                                    UNIQUE READS:
                   Uniquely mapped reads number |	282889654
                        Uniquely mapped reads % |	95.61%
                          Average mapped length |	233.27
                       Number of splices: Total |	288697450
            Number of splices: Annotated (sjdb) |	284175108
                       Number of splices: GT/AG |	284240474
                       Number of splices: GC/AG |	2183012
                       Number of splices: AT/AC |	263296
               Number of splices: Non-canonical |	2010668
                      Mismatch rate per base, % |	0.34%
                         Deletion rate per base |	0.06%
                        Deletion average length |	1.85
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.54
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	9703633
             % of reads mapped to multiple loci |	3.28%
        Number of reads mapped to too many loci |	324902
             % of reads mapped to too many loci |	0.11%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	0
       % of reads unmapped: too many mismatches |	0.00%
            Number of reads unmapped: too short |	2513262
                 % of reads unmapped: too short |	0.85%
                Number of reads unmapped: other |	437121
                     % of reads unmapped: other |	0.15%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%