Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2b/3eea96f2119946dc75e6181a511bc1/tih_rna_sample_00599_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6f/509819f330ccbb44cbc092c7b79147/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6f/509819f330ccbb44cbc092c7b79147/.command.run
==> STAGING COMPLETE (3 inputs)

PAIRED_END_BAM_INPUT
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paired = 275957183
unpaired = 5206221
MERGED PAIRED END READS = 275957183
MATES PROCESSED = 557120587
TOTAL READS     = 281163404
DISTINCT READS  = 9.63981e+07
DISTINCT COUNTS = 1086
MAX COUNT       = 1024590
COUNTS OF 1     = 3.77582e+07
MAX TERMS       = 100
OBSERVED COUNTS (1024591)
1	37758236
2	21886696
3	13426711
4	8206351
5	5029412
6	3124675
7	1985692
8	1297958
9	874445
10	606701
11	432027
12	318260
13	238515
14	184403
15	143618
16	114946
17	93519
18	77175
19	64286
20	54180
21	45987
22	39526
23	34288
24	30114
25	26342
26	23039
27	20416
28	18205
29	16382
30	14647
31	13406
32	12049
33	10823
34	9930
35	9272
36	8386
37	7745
38	7073
39	6595
40	6040
41	5586
42	5393
43	4898
44	4605
45	4277
46	4009
47	3710
48	3539
49	3242
50	3036
51	2939
52	2684
53	2551
54	2444
55	2313
56	2220
57	2042
58	1991
59	1893
60	1805
61	1707
62	1577
63	1517
64	1463
65	1426
66	1354
67	1252
68	1321
69	1167
70	1112
71	1066
72	1084
73	952
74	911
75	951
76	954
77	848
78	870
79	731
80	825
81	757
82	681
83	701
84	676
85	679
86	578
87	621
88	569
89	589
90	524
91	527
92	521
93	515
94	456
95	447
96	448
97	419
98	408
99	436
100	413
101	363
102	370
103	359
104	355
105	348
106	350
107	356
108	342
109	324
110	287
111	296
112	262
113	288
114	288
115	252
116	280
117	237
118	231
119	227
120	222
121	210
122	226
123	232
124	176
125	225
126	211
127	204
128	172
129	186
130	190
131	175
132	195
133	159
134	167
135	153
136	177
137	151
138	151
139	117
140	140
141	144
142	158
143	139
144	142
145	120
146	103
147	112
148	117
149	133
150	129
151	115
152	126
153	117
154	118
155	118
156	93
157	135
158	101
159	112
160	108
161	84
162	93
163	88
164	89
165	102
166	99
167	99
168	101
169	89
170	89
171	72
172	82
173	78
174	80
175	79
176	87
177	95
178	81
179	66
180	76
181	79
182	85
183	59
184	76
185	71
186	72
187	69
188	65
189	63
190	59
191	60
192	61
193	49
194	50
195	84
196	52
197	54
198	44
199	49
200	49
201	65
202	39
203	58
204	42
205	65
206	46
207	55
208	43
209	46
210	47
211	36
212	41
213	54
214	44
215	52
216	42
217	36
218	55
219	48
220	43
221	40
222	42
223	35
224	29
225	40
226	37
227	35
228	35
229	40
230	34
231	39
232	31
233	32
234	31
235	41
236	39
237	32
238	32
239	31
240	27
241	33
242	19
243	32
244	29
245	40
246	28
247	40
248	30
249	25
250	29
251	22
252	29
253	34
254	27
255	21
256	26
257	21
258	12
259	29
260	30
261	22
262	28
263	25
264	20
265	17
266	21
267	17
268	14
269	23
270	23
271	22
272	23
273	15
274	25
275	21
276	24
277	19
278	12
279	17
280	17
281	24
282	22
283	15
284	29
285	19
286	29
287	22
288	11
289	15
290	21
291	25
292	14
293	17
294	16
295	16
296	21
297	16
298	17
299	12
300	16
301	12
302	22
303	16
304	14
305	16
306	20
307	20
308	8
309	19
310	20
311	14
312	4
313	9
314	16
315	21
316	18
317	20
318	12
319	17
320	10
321	19
322	10
323	17
324	9
325	6
326	12
327	8
328	19
329	17
330	11
331	12
332	11
333	14
334	10
335	12
336	9
337	11
338	16
339	10
340	11
341	12
342	13
343	12
344	12
345	15
346	16
347	6
348	7
349	9
350	15
351	6
352	8
353	11
354	13
355	9
356	12
357	9
358	12
359	12
360	9
361	6
362	5
363	5
364	15
365	10
366	7
367	20
368	10
369	12
370	12
371	13
372	10
373	10
374	9
375	12
376	14
377	13
378	8
379	10
380	10
381	15
382	8
383	11
384	7
385	6
386	7
387	6
388	9
389	9
390	8
391	9
392	7
393	8
394	10
395	6
396	5
397	12
398	5
399	7
400	9
401	9
402	5
403	5
404	3
405	6
406	8
407	4
408	8
409	6
410	8
411	3
412	10
413	6
414	5
415	11
416	7
417	3
418	7
419	9
420	6
421	5
422	10
423	9
424	8
425	9
426	7
427	6
428	9
429	3
430	4
431	6
432	3
433	8
434	5
435	7
436	4
437	9
438	3
439	4
440	7
441	7
442	7
443	10
444	2
445	5
446	6
447	7
448	1
449	8
450	8
451	2
452	8
453	3
454	4
455	3
456	3
457	12
458	3
459	6
460	2
461	6
462	3
463	2
464	4
465	7
466	13
467	7
468	3
469	2
470	6
471	6
472	3
473	11
474	3
475	3
476	5
477	5
478	5
479	5
480	4
481	4
482	2
483	4
484	4
485	6
486	3
487	9
488	2
489	4
490	5
491	6
492	2
493	3
494	3
495	7
496	5
497	5
498	2
499	4
500	4
501	2
502	4
503	4
504	6
505	2
506	4
507	5
508	3
509	3
510	9
511	1
512	4
513	4
514	4
515	3
516	3
517	1
518	4
519	5
520	4
521	4
522	4
523	3
524	1
525	2
526	3
527	2
528	2
529	4
530	2
531	4
532	4
533	1
534	1
535	3
536	3
537	1
538	2
539	4
540	3
541	5
542	1
543	2
544	7
545	3
546	2
547	2
548	1
549	5
552	2
553	4
554	4
555	3
556	7
557	6
558	3
559	2
560	3
562	2
563	3
564	1
565	2
567	3
568	1
570	3
571	2
572	5
573	3
574	1
576	2
577	4
578	4
579	2
580	2
581	4
582	3
583	2
584	3
586	3
587	6
588	3
589	3
592	1
593	1
594	1
595	8
596	3
597	2
598	1
599	4
600	4
601	1
602	2
604	2
605	3
606	3
607	1
608	2
609	3
610	2
613	1
614	1
615	1
616	3
617	4
618	7
619	1
620	1
621	5
623	1
624	2
625	2
626	1
627	3
628	2
629	1
630	1
631	1
632	2
633	3
635	2
637	1
638	3
639	3
640	2
641	5
642	2
643	2
644	1
645	3
646	3
648	1
649	1
650	3
651	1
652	4
653	3
654	1
655	2
656	2
657	1
659	2
660	1
661	1
662	2
663	2
664	2
665	2
666	1
667	4
668	2
669	1
670	2
671	1
673	1
674	1
675	1
678	1
679	1
680	2
682	1
684	3
685	1
686	2
689	1
690	1
691	3
693	1
694	3
695	5
696	6
697	2
698	2
699	1
700	1
701	1
702	1
704	1
706	3
707	1
708	1
709	1
710	3
711	3
712	2
714	2
715	2
716	1
718	2
720	1
721	1
722	2
723	1
724	2
725	1
727	1
728	3
730	1
731	2
733	3
734	3
736	2
738	2
739	1
740	5
741	3
742	1
743	1
744	1
745	1
746	1
747	1
750	1
751	1
752	1
753	1
758	2
759	1
763	1
765	2
766	1
767	1
768	2
769	2
771	2
772	3
773	1
774	1
777	1
779	1
780	1
782	1
783	1
784	1
786	1
787	4
789	1
790	2
791	4
792	1
793	3
795	1
796	1
797	3
801	1
804	1
805	2
806	4
808	1
809	1
810	2
811	2
812	1
813	1
816	2
817	2
819	2
822	1
823	1
824	1
825	1
826	3
827	2
828	4
829	3
830	1
831	2
833	2
835	4
836	3
837	2
839	1
840	1
842	2
843	2
846	1
847	2
848	1
849	1
850	2
853	2
854	2
855	2
857	1
858	1
860	1
861	1
862	1
864	1
865	2
866	1
867	1
869	1
870	1
871	2
872	2
877	2
880	2
882	1
883	1
884	1
887	1
888	1
890	1
891	1
892	1
893	1
895	1
897	1
898	1
899	1
900	3
901	2
902	1
903	2
906	1
911	4
912	1
916	1
918	2
920	3
921	1
922	1
924	2
926	1
929	1
931	1
934	1
938	1
939	2
941	3
944	2
948	3
949	1
951	1
953	1
955	1
956	3
957	1
959	2
961	1
963	1
969	1
970	2
973	2
974	1
975	2
978	1
979	1
980	1
984	1
986	1
988	1
989	1
991	1
992	1
993	1
994	2
998	1
999	1
1000	1
1004	1
1005	1
1006	1
1008	1
1011	1
1013	2
1015	1
1016	1
1017	1
1018	1
1019	1
1021	1
1023	1
1029	1
1030	1
1031	1
1037	2
1039	1
1040	1
1047	1
1049	1
1055	1
1058	1
1059	2
1060	1
1063	1
1066	1
1071	1
1074	1
1078	1
1084	1
1092	1
1093	1
1095	1
1106	2
1107	1
1120	3
1122	1
1124	2
1128	1
1129	1
1132	1
1136	1
1141	1
1152	1
1155	1
1156	3
1157	1
1163	1
1167	1
1170	1
1174	1
1176	1
1191	1
1199	1
1215	1
1221	1
1227	1
1234	1
1235	1
1248	1
1249	1
1254	1
1261	1
1266	1
1269	1
1275	2
1276	2
1283	1
1292	1
1298	1
1305	1
1307	1
1308	1
1314	1
1315	1
1324	1
1342	1
1349	1
1354	1
1371	1
1377	1
1378	1
1392	2
1403	1
1404	1
1406	1
1414	1
1415	1
1426	1
1438	1
1441	1
1445	1
1446	1
1448	1
1460	1
1462	1
1471	1
1477	1
1478	1
1481	2
1483	1
1487	1
1488	1
1499	1
1510	1
1514	1
1519	1
1531	1
1533	1
1539	1
1550	1
1555	3
1557	1
1560	1
1565	1
1571	2
1573	1
1576	2
1594	1
1602	1
1616	1
1623	1
1626	1
1641	1
1644	1
1646	1
1656	1
1658	1
1662	1
1664	2
1697	1
1708	1
1711	1
1718	1
1723	1
1733	1
1734	1
1744	1
1748	1
1758	1
1760	1
1761	1
1767	1
1773	1
1776	1
1778	1
1799	1
1800	1
1815	1
1823	1
1838	1
1847	1
1850	1
1855	1
1868	1
1875	1
1886	1
1887	1
1891	1
1895	1
1920	1
1928	1
1932	1
1938	1
1940	1
1946	1
1969	1
1971	1
1988	1
2024	1
2030	1
2056	1
2072	1
2075	1
2087	1
2094	1
2197	1
2225	2
2248	1
2250	1
2289	1
2292	1
2296	1
2319	1
2343	1
2350	1
2380	1
2382	1
2400	1
2430	1
2508	1
2547	1
2554	1
2584	1
2632	1
2641	1
2794	1
2832	1
2835	1
2842	1
2953	1
2958	1
3001	1
3083	1
3125	1
3252	1
3410	1
3514	1
3532	1
3616	1
3679	1
3753	1
3771	1
3852	1
4331	1
4841	1
5113	1
5738	1
7030	1
7609	1
11606	1
12840	1
19266	1
1024590	1

[ESTIMATING YIELD CURVE]
[BOOTSTRAPPING HISTOGRAM]
....................................._..................................
.............................
[COMPUTING CONFIDENCE INTERVALS]
[WRITING OUTPUT]